Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26631.t1 | XP_003607978.1 | 94.7 | 226 | 2 | 3 | 1 | 221 | 106 | 326 | 6.20E-108 | 400.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26631.t1 | G7JL88 | 94.7 | 226 | 2 | 3 | 1 | 221 | 106 | 326 | 4.5e-108 | 400.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene26631 | 0.807823 | 4.19E-50 | -1.69E-46 |
| MS.gene050630 | MS.gene26631 | 0.831056 | 2.07E-55 | -1.69E-46 |
| MS.gene053500 | MS.gene26631 | 0.891668 | 3.22E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26631.t1 | MTR_4g086170 | 94.690 | 226 | 2 | 3 | 1 | 221 | 106 | 326 | 2.72e-154 | 431 |
| MS.gene26631.t1 | MTR_6g005540 | 91.593 | 226 | 12 | 2 | 1 | 221 | 123 | 346 | 1.86e-150 | 422 |
| MS.gene26631.t1 | MTR_4g055190 | 56.621 | 219 | 87 | 3 | 1 | 218 | 110 | 321 | 1.90e-87 | 261 |
| MS.gene26631.t1 | MTR_4g055205 | 51.456 | 103 | 46 | 1 | 116 | 218 | 1 | 99 | 1.31e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26631.t1 | AT5G55610 | 58.257 | 218 | 89 | 1 | 1 | 218 | 111 | 326 | 6.46e-89 | 265 |
| MS.gene26631.t1 | AT5G55610 | 63.158 | 114 | 40 | 1 | 1 | 114 | 111 | 222 | 3.29e-44 | 149 |
Find 50 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCACTATTTGCCTCTTT+TGG | 0.231224 | 4.1:+23587843 | MS.gene26631:CDS |
| ACCAAGCAAGTTCAACTTCT+TGG | 0.236486 | 4.1:+23590196 | MS.gene26631:CDS |
| ATGGCTTGGAAACTTCTTAA+AGG | 0.268888 | 4.1:+23589689 | MS.gene26631:CDS |
| TGACTTATTTGAGAATATTA+TGG | 0.283966 | 4.1:+23587894 | MS.gene26631:CDS |
| ATCGTCATTGGCATTGAAAA+TGG | 0.334939 | 4.1:-23590149 | None:intergenic |
| AGGATGTGCTGCTGGTGATT+TGG | 0.382760 | 4.1:+23590445 | MS.gene26631:intron |
| AGGTTGCCCTTACTTCAATA+AGG | 0.392106 | 4.1:+23590224 | MS.gene26631:CDS |
| ACCAGATCAACACGGTGTTC+TGG | 0.408130 | 4.1:-23587925 | None:intergenic |
| CCATTCGCTCTGAAACATAA+TGG | 0.424104 | 4.1:-23589670 | None:intergenic |
| AAAGAGGCAAATAGTGCATC+AGG | 0.438648 | 4.1:-23587840 | None:intergenic |
| GCGCAAAATGCTACAATGAT+TGG | 0.438885 | 4.1:-23590473 | None:intergenic |
| ACTGTCTTCGTCATCGTCAT+TGG | 0.446980 | 4.1:-23590161 | None:intergenic |
| TGCCACTTGAAATGCTTTGT+CGG | 0.447275 | 4.1:-23590495 | None:intergenic |
| AACCACACCTTATTGAAGTA+AGG | 0.448289 | 4.1:-23590231 | None:intergenic |
| TCCAAGAAGTTGAACTTGCT+TGG | 0.452273 | 4.1:-23590197 | None:intergenic |
| CACTTGCAATGACTTCAATA+AGG | 0.453405 | 4.1:+23587812 | None:intergenic |
| GCCAGAACACCGTGTTGATC+TGG | 0.456801 | 4.1:+23587924 | MS.gene26631:CDS |
| ACCCTTGTTCGTCCATCACT+TGG | 0.457968 | 4.1:+23590295 | MS.gene26631:CDS |
| TGCTAGGAGTTGCAGCATCA+TGG | 0.479028 | 4.1:+23590086 | MS.gene26631:CDS |
| AGCACCGATCCCTGCTCCTA+TGG | 0.484318 | 4.1:-23590272 | None:intergenic |
| CCATCACTTGGCCAGTGGAT+TGG | 0.485537 | 4.1:+23590307 | MS.gene26631:CDS |
| GAAAAGAAGTAAACATAAGT+AGG | 0.487456 | 4.1:-23589939 | None:intergenic |
| GCCTTGCGAGTAGCTGATCT+AGG | 0.494720 | 4.1:-23589903 | None:intergenic |
| CCATTATGTTTCAGAGCGAA+TGG | 0.519354 | 4.1:+23589670 | MS.gene26631:CDS |
| TTATGATCTTACCAATCCAC+TGG | 0.520316 | 4.1:-23590318 | None:intergenic |
| CGCCGACAAAGCATTTCAAG+TGG | 0.520834 | 4.1:+23590493 | MS.gene26631:CDS |
| TTCGTCCATCACTTGGCCAG+TGG | 0.522512 | 4.1:+23590302 | MS.gene26631:CDS |
| GCTAGGAGTTGCAGCATCAT+GGG | 0.526174 | 4.1:+23590087 | MS.gene26631:CDS |
| GCCCTTACTTCAATAAGGTG+TGG | 0.528158 | 4.1:+23590229 | MS.gene26631:CDS |
| AGTTCAACTTCTTGGACAGA+AGG | 0.529384 | 4.1:+23590204 | MS.gene26631:CDS |
| TCTGCACGCGGCTCCAAAAG+AGG | 0.538832 | 4.1:-23587856 | None:intergenic |
| TGTGCTGCTGGTGATTTGGT+TGG | 0.542559 | 4.1:+23590449 | MS.gene26631:CDS |
| CAGCTACTCGCAAGGCTGCA+AGG | 0.544366 | 4.1:+23589910 | MS.gene26631:CDS |
| TCTTTCTAATATTCTTTGAG+TGG | 0.546696 | 4.1:-23589639 | None:intergenic |
| GCCTCCATAGGAGCAGGGAT+CGG | 0.554442 | 4.1:+23590268 | MS.gene26631:CDS |
| CCAATCCACTGGCCAAGTGA+TGG | 0.565048 | 4.1:-23590307 | None:intergenic |
| ATGGGTTGTTCAAGTAGGCA+TGG | 0.578157 | 4.1:+23590105 | MS.gene26631:CDS |
| GCATCATGGGTTGTTCAAGT+AGG | 0.587111 | 4.1:+23590100 | MS.gene26631:CDS |
| ATGTTTCAGAGCGAATGGCT+TGG | 0.594195 | 4.1:+23589675 | MS.gene26631:CDS |
| CTTATTTGAGAATATTATGG+AGG | 0.594775 | 4.1:+23587897 | MS.gene26631:CDS |
| TTATGCACAGGACACATGCT+AGG | 0.599684 | 4.1:+23590070 | MS.gene26631:intron |
| ACCACACCTTATTGAAGTAA+GGG | 0.601634 | 4.1:-23590230 | None:intergenic |
| GGCCAAGTGATGGACGAACA+AGG | 0.608320 | 4.1:-23590297 | None:intergenic |
| ACCGATCCCTGCTCCTATGG+AGG | 0.615889 | 4.1:-23590269 | None:intergenic |
| TCCTAGATCAGCTACTCGCA+AGG | 0.622944 | 4.1:+23589902 | MS.gene26631:CDS |
| GCCAAGTGATGGACGAACAA+GGG | 0.637107 | 4.1:-23590296 | None:intergenic |
| AGATCTTCTATTTCTGCACG+CGG | 0.653709 | 4.1:-23587868 | None:intergenic |
| GTGGGCAGAACAACATTCAG+AGG | 0.670489 | 4.1:+23589963 | MS.gene26631:CDS |
| TGTGAAGCAAATCATACGTG+AGG | 0.685919 | 4.1:+23587966 | MS.gene26631:CDS |
| AGGGAACAACCAGATCAACA+CGG | 0.751632 | 4.1:-23587933 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACATATTAATTGAGT+TGG | + | chr4.1:23588229-23588248 | MS.gene26631:intron | 15.0% |
| !! | ATAAGTATGAATTAAAAAGT+AGG | - | chr4.1:23588306-23588325 | None:intergenic | 15.0% |
| !!! | ATCTTGGTTTTATAATTTTA+AGG | + | chr4.1:23588660-23588679 | MS.gene26631:intron | 15.0% |
| !!! | TTATAATTTTAAGGAGTATA+TGG | + | chr4.1:23588669-23588688 | MS.gene26631:intron | 15.0% |
| !!! | TTTTTAATTCATACTTATGT+AGG | + | chr4.1:23588308-23588327 | MS.gene26631:intron | 15.0% |
| !!! | TTTTTTTTGTTTTCAAAACT+CGG | + | chr4.1:23588083-23588102 | MS.gene26631:intron | 15.0% |
| !! | AGTTGAAATGAATTAAAATC+AGG | - | chr4.1:23590396-23590415 | None:intergenic | 20.0% |
| !! | GTCAAATAAGTTTCAAAAAT+TGG | - | chr4.1:23588776-23588795 | None:intergenic | 20.0% |
| !! | TATGAAAAATAAAGCAAAGA+AGG | - | chr4.1:23589066-23589085 | None:intergenic | 20.0% |
| !! | TGACTTATTTGAGAATATTA+TGG | + | chr4.1:23587894-23587913 | MS.gene26631:CDS | 20.0% |
| !!! | TCTCATTTATTTTGAAATCT+TGG | + | chr4.1:23588644-23588663 | MS.gene26631:intron | 20.0% |
| !!! | TCTTGTTTTAACATTTAGTT+AGG | + | chr4.1:23588008-23588027 | MS.gene26631:intron | 20.0% |
| !!! | TTGACTTGGTAATTTAAAAA+CGG | + | chr4.1:23589542-23589561 | MS.gene26631:intron | 20.0% |
| ! | AAAAATAAAGCAAAGAAGGT+AGG | - | chr4.1:23589062-23589081 | None:intergenic | 25.0% |
| ! | AAAACTAACTGCTTGAAATT+TGG | - | chr4.1:23589356-23589375 | None:intergenic | 25.0% |
| ! | AAAATAAAGCAAAGAAGGTA+GGG | - | chr4.1:23589061-23589080 | None:intergenic | 25.0% |
| ! | AAAGAAAATTTAGGTCTCTA+AGG | - | chr4.1:23588902-23588921 | None:intergenic | 25.0% |
| ! | AAGATAAGCTAAAAAACGAT+TGG | - | chr4.1:23588381-23588400 | None:intergenic | 25.0% |
| ! | AGAATAGAATATCATGAAAG+AGG | + | chr4.1:23589390-23589409 | MS.gene26631:intron | 25.0% |
| ! | AGTACCAGAAAAGAAAATTT+AGG | - | chr4.1:23588911-23588930 | None:intergenic | 25.0% |
| ! | CTTATTTGAGAATATTATGG+AGG | + | chr4.1:23587897-23587916 | MS.gene26631:CDS | 25.0% |
| ! | GAAAAGAAGTAAACATAAGT+AGG | - | chr4.1:23589942-23589961 | None:intergenic | 25.0% |
| ! | GAAGTAACATGAAATTGAAT+TGG | + | chr4.1:23589440-23589459 | MS.gene26631:intron | 25.0% |
| ! | TATTAAACTTTGACTGCTTT+AGG | - | chr4.1:23589778-23589797 | None:intergenic | 25.0% |
| ! | TCTTTCTAATATTCTTTGAG+TGG | - | chr4.1:23589642-23589661 | None:intergenic | 25.0% |
| ! | TGAACTATTATAGAGTAATG+TGG | - | chr4.1:23589162-23589181 | None:intergenic | 25.0% |
| !! | AAAACTTTGTTCTTCTTTTC+AGG | + | chr4.1:23590425-23590444 | MS.gene26631:intron | 25.0% |
| !! | ATAGTTGATATTAAATGCTC+AGG | - | chr4.1:23590029-23590048 | None:intergenic | 25.0% |
| !! | TACTCATTTCTTTTCTCAAA+TGG | - | chr4.1:23588461-23588480 | None:intergenic | 25.0% |
| !! | TATGTTTACTTCTTTTCTGT+GGG | + | chr4.1:23589945-23589964 | MS.gene26631:CDS | 25.0% |
| !! | TTACTAACTTGACTTGATAA+AGG | + | chr4.1:23588514-23588533 | MS.gene26631:intron | 25.0% |
| !! | TTATGTTTACTTCTTTTCTG+TGG | + | chr4.1:23589944-23589963 | MS.gene26631:CDS | 25.0% |
| AATTGAGCCCAATATCTTTA+AGG | + | chr4.1:23588590-23588609 | MS.gene26631:intron | 30.0% | |
| AGATAATTTACTTAGCGAAG+AGG | - | chr4.1:23588197-23588216 | None:intergenic | 30.0% | |
| AGGTTAACCAATTATTAGTG+TGG | + | chr4.1:23588534-23588553 | MS.gene26631:intron | 30.0% | |
| TAAAGATATTGGGCTCAATT+AGG | - | chr4.1:23588590-23588609 | None:intergenic | 30.0% | |
| TGAATCTCTAACTATGTGTA+TGG | + | chr4.1:23588342-23588361 | MS.gene26631:intron | 30.0% | |
| ! | ACTTCTTAAAGGTATGTTCT+CGG | + | chr4.1:23589700-23589719 | MS.gene26631:intron | 30.0% |
| ! | GAAGAACAAAGTTTTGCTTT+AGG | - | chr4.1:23590420-23590439 | None:intergenic | 30.0% |
| ! | GAGACCTAAATTTTCTTTTC+TGG | + | chr4.1:23588904-23588923 | MS.gene26631:intron | 30.0% |
| ! | TCTAGCTCCTTAAAGATATT+GGG | - | chr4.1:23588600-23588619 | None:intergenic | 30.0% |
| !! | AGCTTTTAAGGAAAATCGTT+TGG | - | chr4.1:23588426-23588445 | None:intergenic | 30.0% |
| AAATGACAAGTCACGTTCTT+TGG | - | chr4.1:23588117-23588136 | None:intergenic | 35.0% | |
| AACCACACCTTATTGAAGTA+AGG | - | chr4.1:23590234-23590253 | None:intergenic | 35.0% | |
| AATGACAAGTCACGTTCTTT+GGG | - | chr4.1:23588116-23588135 | None:intergenic | 35.0% | |
| ACCACACCTTATTGAAGTAA+GGG | - | chr4.1:23590233-23590252 | None:intergenic | 35.0% | |
| ACTCTATGTTCATTATGCAC+AGG | + | chr4.1:23590058-23590077 | MS.gene26631:intron | 35.0% | |
| ACTGCTTGAAATTTGGAGAT+AGG | - | chr4.1:23589349-23589368 | None:intergenic | 35.0% | |
| CTGCTTGAAATTTGGAGATA+GGG | - | chr4.1:23589348-23589367 | None:intergenic | 35.0% | |
| GAAGATCATCTGAGTAACAA+AGG | - | chr4.1:23588982-23589001 | None:intergenic | 35.0% | |
| GGATTAATCGAAGCTTAATG+AGG | - | chr4.1:23589199-23589218 | None:intergenic | 35.0% | |
| GTCCATCAGGAATATAGAAA+AGG | - | chr4.1:23589513-23589532 | None:intergenic | 35.0% | |
| GTGACATCCACACTAATAAT+TGG | - | chr4.1:23588544-23588563 | None:intergenic | 35.0% | |
| TAGCTTATCTTCTCCTCTTA+AGG | + | chr4.1:23588390-23588409 | MS.gene26631:intron | 35.0% | |
| TTAGTGTGGATGTCACATTT+CGG | + | chr4.1:23588548-23588567 | MS.gene26631:intron | 35.0% | |
| TTATGATCTTACCAATCCAC+TGG | - | chr4.1:23590321-23590340 | None:intergenic | 35.0% | |
| TTGAAATTTGGAGATAGGGT+TGG | - | chr4.1:23589344-23589363 | None:intergenic | 35.0% | |
| ! | AGGCAGAAGCATAATTTGAT+GGG | - | chr4.1:23589032-23589051 | None:intergenic | 35.0% |
| ! | ATCGTCATTGGCATTGAAAA+TGG | - | chr4.1:23590152-23590171 | None:intergenic | 35.0% |
| ! | ATGGCTTGGAAACTTCTTAA+AGG | + | chr4.1:23589689-23589708 | MS.gene26631:CDS | 35.0% |
| ! | CAAGGCATCTCAAAAGTTTA+TGG | - | chr4.1:23588864-23588883 | None:intergenic | 35.0% |
| ! | CGATTTTCCTTAAAAGCTCT+CGG | + | chr4.1:23588428-23588447 | MS.gene26631:intron | 35.0% |
| ! | CTCTAGCTCCTTAAAGATAT+TGG | - | chr4.1:23588601-23588620 | None:intergenic | 35.0% |
| ! | TGCCTTTTCTATATTCCTGA+TGG | + | chr4.1:23589508-23589527 | MS.gene26631:intron | 35.0% |
| ! | TGCTTCACAGACTTTTTGAA+GGG | - | chr4.1:23587955-23587974 | None:intergenic | 35.0% |
| ! | TTGCTTCACAGACTTTTTGA+AGG | - | chr4.1:23587956-23587975 | None:intergenic | 35.0% |
| !! | AATGAAGCTAAGGTTGATAG+TGG | + | chr4.1:23588837-23588856 | MS.gene26631:intron | 35.0% |
| !! | CATGAAAGAGGTGTTTAAGA+GGG | + | chr4.1:23589402-23589421 | MS.gene26631:intron | 35.0% |
| !! | TCATGAAAGAGGTGTTTAAG+AGG | + | chr4.1:23589401-23589420 | MS.gene26631:intron | 35.0% |
| !! | TTTTCTTTTCTGGTACTGCA+TGG | + | chr4.1:23588914-23588933 | MS.gene26631:intron | 35.0% |
| !!! | TAAACTTTTGAGATGCCTTG+AGG | + | chr4.1:23588864-23588883 | MS.gene26631:intron | 35.0% |
| !!! | TCTTTAGTTTTTGCCTCCAT+AGG | + | chr4.1:23590256-23590275 | MS.gene26631:CDS | 35.0% |
| !!! | TTCTTTTTGAGTCGAAACAG+TGG | + | chr4.1:23588808-23588827 | MS.gene26631:intron | 35.0% |
| AAAGAGGCAAATAGTGCATC+AGG | - | chr4.1:23587843-23587862 | None:intergenic | 40.0% | |
| AAGCATCCCTGCATATAACT+CGG | - | chr4.1:23589297-23589316 | None:intergenic | 40.0% | |
| ACCAAGCAAGTTCAACTTCT+TGG | + | chr4.1:23590196-23590215 | MS.gene26631:CDS | 40.0% | |
| AGGCAATTTATTGAGCCTCA+AGG | - | chr4.1:23588882-23588901 | None:intergenic | 40.0% | |
| AGGTTGCCCTTACTTCAATA+AGG | + | chr4.1:23590224-23590243 | MS.gene26631:CDS | 40.0% | |
| AGTTCAACTTCTTGGACAGA+AGG | + | chr4.1:23590204-23590223 | MS.gene26631:CDS | 40.0% | |
| AGTTTCCTTGTCAAGTGAAG+GGG | - | chr4.1:23589241-23589260 | None:intergenic | 40.0% | |
| ATCTCTTCCGAGTTATATGC+AGG | + | chr4.1:23589287-23589306 | MS.gene26631:intron | 40.0% | |
| CCATTATGTTTCAGAGCGAA+TGG | + | chr4.1:23589670-23589689 | MS.gene26631:CDS | 40.0% | |
| CTTCACTTGACAAGGAAACT+CGG | + | chr4.1:23589241-23589260 | MS.gene26631:intron | 40.0% | |
| GAGTTTCCTTGTCAAGTGAA+GGG | - | chr4.1:23589242-23589261 | None:intergenic | 40.0% | |
| GATAAATGATGTTGAGCCAG+AGG | - | chr4.1:23588950-23588969 | None:intergenic | 40.0% | |
| GCGCAAAATGCTACAATGAT+TGG | - | chr4.1:23590476-23590495 | None:intergenic | 40.0% | |
| GGGAAAGATGCAAGACAAAT+GGG | - | chr4.1:23589220-23589239 | None:intergenic | 40.0% | |
| GTGGTGTAGTAATGAAGCTA+AGG | + | chr4.1:23588827-23588846 | MS.gene26631:intron | 40.0% | |
| TAGGTAAGCGTAGAGAAAAG+TGG | - | chr4.1:23588287-23588306 | None:intergenic | 40.0% | |
| TCAACAGAAAAGAGTCCATC+AGG | - | chr4.1:23589526-23589545 | None:intergenic | 40.0% | |
| TCTCTTCCGAGTTATATGCA+GGG | + | chr4.1:23589288-23589307 | MS.gene26631:intron | 40.0% | |
| TGTGAAGCAAATCATACGTG+AGG | + | chr4.1:23587966-23587985 | MS.gene26631:CDS | 40.0% | |
| TTCACTTGACAAGGAAACTC+GGG | + | chr4.1:23589242-23589261 | MS.gene26631:intron | 40.0% | |
| ! | CAGGCAGAAGCATAATTTGA+TGG | - | chr4.1:23589033-23589052 | None:intergenic | 40.0% |
| ! | CATTCTTCCGAGAGCTTTTA+AGG | - | chr4.1:23588438-23588457 | None:intergenic | 40.0% |
| ! | GAAACTCGGGATACAGTTTT+AGG | + | chr4.1:23589255-23589274 | MS.gene26631:intron | 40.0% |
| ! | GATGCACTATTTGCCTCTTT+TGG | + | chr4.1:23587843-23587862 | MS.gene26631:CDS | 40.0% |
| ! | TCCAAGAAGTTGAACTTGCT+TGG | - | chr4.1:23590200-23590219 | None:intergenic | 40.0% |
| ! | TGCCACTTGAAATGCTTTGT+CGG | - | chr4.1:23590498-23590517 | None:intergenic | 40.0% |
| !! | AGATCTTCTATTTCTGCACG+CGG | - | chr4.1:23587871-23587890 | None:intergenic | 40.0% |
| !! | CCATTCGCTCTGAAACATAA+TGG | - | chr4.1:23589673-23589692 | None:intergenic | 40.0% |
| !! | TGGACTCTTTTCTGTTGACT+TGG | + | chr4.1:23589528-23589547 | MS.gene26631:intron | 40.0% |
| ACTGTCTTCGTCATCGTCAT+TGG | - | chr4.1:23590164-23590183 | None:intergenic | 45.0% | |
| AGGGAACAACCAGATCAACA+CGG | - | chr4.1:23587936-23587955 | None:intergenic | 45.0% | |
| ATGTTTCAGAGCGAATGGCT+TGG | + | chr4.1:23589675-23589694 | MS.gene26631:CDS | 45.0% | |
| CGAGTTTCCTTGTCAAGTGA+AGG | - | chr4.1:23589243-23589262 | None:intergenic | 45.0% | |
| GAGCTCTATAAACAGCTGAG+TGG | - | chr4.1:23588734-23588753 | None:intergenic | 45.0% | |
| GCCCTTACTTCAATAAGGTG+TGG | + | chr4.1:23590229-23590248 | MS.gene26631:CDS | 45.0% | |
| GGGGAAAGATGCAAGACAAA+TGG | - | chr4.1:23589221-23589240 | None:intergenic | 45.0% | |
| GTTTCCTTGTCAAGTGAAGG+GGG | - | chr4.1:23589240-23589259 | None:intergenic | 45.0% | |
| TGGTTCAGCTTCTCCTTAAG+AGG | - | chr4.1:23588406-23588425 | None:intergenic | 45.0% | |
| TTATGCACAGGACACATGCT+AGG | + | chr4.1:23590070-23590089 | MS.gene26631:intron | 45.0% | |
| ! | ATGGGTTGTTCAAGTAGGCA+TGG | + | chr4.1:23590105-23590124 | MS.gene26631:CDS | 45.0% |
| ! | GCATCATGGGTTGTTCAAGT+AGG | + | chr4.1:23590100-23590119 | MS.gene26631:CDS | 45.0% |
| ! | TTTTTGCCTCCATAGGAGCA+GGG | + | chr4.1:23590263-23590282 | MS.gene26631:CDS | 45.0% |
| !! | AATTTGATGGGCTGATGACG+AGG | - | chr4.1:23589020-23589039 | None:intergenic | 45.0% |
| !! | TTCTTTTCAGGATGTGCTGC+TGG | + | chr4.1:23590437-23590456 | MS.gene26631:intron | 45.0% |
| ACCAGATCAACACGGTGTTC+TGG | - | chr4.1:23587928-23587947 | None:intergenic | 50.0% | |
| ACCCTTGTTCGTCCATCACT+TGG | + | chr4.1:23590295-23590314 | MS.gene26631:CDS | 50.0% | |
| CTTTCCCCCTTCACTTGACA+AGG | + | chr4.1:23589233-23589252 | MS.gene26631:intron | 50.0% | |
| GCTAGGAGTTGCAGCATCAT+GGG | + | chr4.1:23590087-23590106 | MS.gene26631:CDS | 50.0% | |
| GTGGGCAGAACAACATTCAG+AGG | + | chr4.1:23589963-23589982 | MS.gene26631:CDS | 50.0% | |
| GTTGAGCCAGAGGAGAAAAC+AGG | - | chr4.1:23588940-23588959 | None:intergenic | 50.0% | |
| TCCTAGATCAGCTACTCGCA+AGG | + | chr4.1:23589902-23589921 | MS.gene26631:CDS | 50.0% | |
| TGCTAGGAGTTGCAGCATCA+TGG | + | chr4.1:23590086-23590105 | MS.gene26631:CDS | 50.0% | |
| ! | AGGATGTGCTGCTGGTGATT+TGG | + | chr4.1:23590445-23590464 | MS.gene26631:intron | 50.0% |
| ! | CAAAGAAGGTAGGGAAGTGC+AGG | - | chr4.1:23589052-23589071 | None:intergenic | 50.0% |
| ! | CGCCGACAAAGCATTTCAAG+TGG | + | chr4.1:23590493-23590512 | MS.gene26631:CDS | 50.0% |
| ! | GTTTTTGCCTCCATAGGAGC+AGG | + | chr4.1:23590262-23590281 | MS.gene26631:CDS | 50.0% |
| !! | GCCAAGTGATGGACGAACAA+GGG | - | chr4.1:23590299-23590318 | None:intergenic | 50.0% |
| !! | TGTGCTGCTGGTGATTTGGT+TGG | + | chr4.1:23590449-23590468 | MS.gene26631:CDS | 50.0% |
| CCAATCCACTGGCCAAGTGA+TGG | - | chr4.1:23590310-23590329 | None:intergenic | 55.0% | |
| CCATCACTTGGCCAGTGGAT+TGG | + | chr4.1:23590307-23590326 | MS.gene26631:CDS | 55.0% | |
| GCCTTGCGAGTAGCTGATCT+AGG | - | chr4.1:23589906-23589925 | None:intergenic | 55.0% | |
| TTCGTCCATCACTTGGCCAG+TGG | + | chr4.1:23590302-23590321 | MS.gene26631:CDS | 55.0% | |
| ! | GCATGGCCTGTTTTCTCCTC+TGG | + | chr4.1:23588931-23588950 | MS.gene26631:intron | 55.0% |
| ! | GCCAGAACACCGTGTTGATC+TGG | + | chr4.1:23587924-23587943 | MS.gene26631:CDS | 55.0% |
| !! | GGCCAAGTGATGGACGAACA+AGG | - | chr4.1:23590300-23590319 | None:intergenic | 55.0% |
| ACCGATCCCTGCTCCTATGG+AGG | - | chr4.1:23590272-23590291 | None:intergenic | 60.0% | |
| CAGCTACTCGCAAGGCTGCA+AGG | + | chr4.1:23589910-23589929 | MS.gene26631:CDS | 60.0% | |
| GCCTCCATAGGAGCAGGGAT+CGG | + | chr4.1:23590268-23590287 | MS.gene26631:CDS | 60.0% | |
| TCTGCACGCGGCTCCAAAAG+AGG | - | chr4.1:23587859-23587878 | None:intergenic | 60.0% | |
| !! | AGCACCGATCCCTGCTCCTA+TGG | - | chr4.1:23590275-23590294 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 23587820 | 23590523 | 23587820 | ID=MS.gene26631 |
| chr4.1 | mRNA | 23587820 | 23590523 | 23587820 | ID=MS.gene26631.t1;Parent=MS.gene26631 |
| chr4.1 | exon | 23587820 | 23587987 | 23587820 | ID=MS.gene26631.t1.exon1;Parent=MS.gene26631.t1 |
| chr4.1 | CDS | 23587820 | 23587987 | 23587820 | ID=cds.MS.gene26631.t1;Parent=MS.gene26631.t1 |
| chr4.1 | exon | 23589626 | 23589710 | 23589626 | ID=MS.gene26631.t1.exon2;Parent=MS.gene26631.t1 |
| chr4.1 | CDS | 23589626 | 23589710 | 23589626 | ID=cds.MS.gene26631.t1;Parent=MS.gene26631.t1 |
| chr4.1 | exon | 23589898 | 23589984 | 23589898 | ID=MS.gene26631.t1.exon3;Parent=MS.gene26631.t1 |
| chr4.1 | CDS | 23589898 | 23589984 | 23589898 | ID=cds.MS.gene26631.t1;Parent=MS.gene26631.t1 |
| chr4.1 | exon | 23590080 | 23590328 | 23590080 | ID=MS.gene26631.t1.exon4;Parent=MS.gene26631.t1 |
| chr4.1 | CDS | 23590080 | 23590328 | 23590080 | ID=cds.MS.gene26631.t1;Parent=MS.gene26631.t1 |
| chr4.1 | exon | 23590447 | 23590523 | 23590447 | ID=MS.gene26631.t1.exon5;Parent=MS.gene26631.t1 |
| chr4.1 | CDS | 23590447 | 23590523 | 23590447 | ID=cds.MS.gene26631.t1;Parent=MS.gene26631.t1 |
| Gene Sequence |
| Protein sequence |
