Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053500.t1 | XP_003607978.1 | 95.1 | 226 | 1 | 3 | 1 | 221 | 106 | 326 | 1.60E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053500.t1 | G7JL88 | 95.1 | 226 | 1 | 3 | 1 | 221 | 106 | 326 | 1.2e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene053500 | 0.803615 | 3.20E-49 | -1.69E-46 |
| MS.gene050630 | MS.gene053500 | 0.801265 | 9.77E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene061841 | 0.824105 | 9.66E-54 | -1.69E-46 |
| MS.gene053500 | MS.gene067143 | 0.807356 | 5.26E-50 | -1.69E-46 |
| MS.gene053500 | MS.gene067144 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene071428 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene07246 | 0.803137 | 4.02E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene072956 | 0.806017 | 1.01E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene072963 | 0.807164 | 5.78E-50 | -1.69E-46 |
| MS.gene053500 | MS.gene074377 | 0.8216 | 3.70E-53 | -1.69E-46 |
| MS.gene053500 | MS.gene09275 | 0.801553 | 8.53E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene20768 | 0.817129 | 3.87E-52 | -1.69E-46 |
| MS.gene053500 | MS.gene22813 | 0.804166 | 2.46E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene24224 | 0.822538 | 2.24E-53 | -1.69E-46 |
| MS.gene053500 | MS.gene25932 | 0.824465 | 7.95E-54 | -1.69E-46 |
| MS.gene053500 | MS.gene26631 | 0.891668 | 3.22E-74 | -1.69E-46 |
| MS.gene053500 | MS.gene26665 | 0.815444 | 9.22E-52 | -1.69E-46 |
| MS.gene053500 | MS.gene27011 | 0.833076 | 6.56E-56 | -1.69E-46 |
| MS.gene053500 | MS.gene50479 | 0.815667 | 8.22E-52 | -1.69E-46 |
| MS.gene053500 | MS.gene58838 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene053500 | MS.gene58950 | 0.811948 | 5.42E-51 | -1.69E-46 |
| MS.gene053500 | MS.gene70604 | 0.823879 | 1.09E-53 | -1.69E-46 |
| MS.gene053500 | MS.gene74270 | 0.826275 | 2.97E-54 | -1.69E-46 |
| MS.gene053500 | MS.gene74272 | 0.821219 | 4.54E-53 | -1.69E-46 |
| MS.gene053500 | MS.gene78595 | 0.800567 | 1.36E-48 | -1.69E-46 |
| MS.gene053500 | MS.gene86828 | 0.804708 | 1.90E-49 | -1.69E-46 |
| MS.gene053500 | MS.gene90732 | 0.815196 | 1.05E-51 | -1.69E-46 |
| MS.gene053500 | MS.gene90984 | 0.805304 | 1.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053500.t1 | MTR_4g086170 | 95.133 | 226 | 1 | 3 | 1 | 221 | 106 | 326 | 4.97e-155 | 432 |
| MS.gene053500.t1 | MTR_6g005540 | 92.478 | 226 | 10 | 2 | 1 | 221 | 123 | 346 | 9.15e-152 | 425 |
| MS.gene053500.t1 | MTR_4g055190 | 57.078 | 219 | 86 | 3 | 1 | 218 | 110 | 321 | 1.82e-87 | 261 |
| MS.gene053500.t1 | MTR_4g055205 | 51.456 | 103 | 46 | 1 | 116 | 218 | 1 | 99 | 1.42e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053500.t1 | AT5G55610 | 58.716 | 218 | 88 | 1 | 1 | 218 | 111 | 326 | 8.24e-90 | 268 |
| MS.gene053500.t1 | AT5G55610 | 64.035 | 114 | 39 | 1 | 1 | 114 | 111 | 222 | 5.65e-45 | 151 |
Find 50 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCACTATTTGCCTCTTT+TGG | 0.231224 | 4.3:+26710001 | MS.gene053500:CDS |
| ACCAAGCAAGTTCAACTTCT+TGG | 0.236486 | 4.3:+26712406 | MS.gene053500:CDS |
| ATGGCTTGGAAACTTCTTAA+AGG | 0.268888 | 4.3:+26711899 | MS.gene053500:CDS |
| ATCGTCATTGGCATTGAAAA+TGG | 0.334939 | 4.3:-26712359 | None:intergenic |
| AGGATGTGCTGCTGGTGATT+TGG | 0.382760 | 4.3:+26712655 | MS.gene053500:intron |
| AGGTTGCCCTTACTTCAATA+AGG | 0.392106 | 4.3:+26712434 | MS.gene053500:CDS |
| ACCAGATCAACACGGTGTTC+TGG | 0.408130 | 4.3:-26710083 | None:intergenic |
| TGACTTATTTGAGAATATTA+CGG | 0.410949 | 4.3:+26710052 | MS.gene053500:CDS |
| CCATTCGCTCTGAAACATAA+TGG | 0.424104 | 4.3:-26711880 | None:intergenic |
| AAAGAGGCAAATAGTGCATC+AGG | 0.438648 | 4.3:-26709998 | None:intergenic |
| GCGCAAAATGCTACAATGAT+TGG | 0.438885 | 4.3:-26712683 | None:intergenic |
| ACTGTCTTCGTCATCGTCAT+TGG | 0.446980 | 4.3:-26712371 | None:intergenic |
| TGCCACTTGAAATGCTTTGT+CGG | 0.447275 | 4.3:-26712705 | None:intergenic |
| AACCACACCTTATTGAAGTA+AGG | 0.448289 | 4.3:-26712441 | None:intergenic |
| TCCAAGAAGTTGAACTTGCT+TGG | 0.452273 | 4.3:-26712407 | None:intergenic |
| CACTTGCAATGACTTCAATA+AGG | 0.453405 | 4.3:+26709970 | None:intergenic |
| GCCAGAACACCGTGTTGATC+TGG | 0.456801 | 4.3:+26710082 | MS.gene053500:CDS |
| ACCCTTGTTCGTCCATCACT+TGG | 0.457968 | 4.3:+26712505 | MS.gene053500:CDS |
| TGCTAGGAGTTGCAGCATCA+TGG | 0.479028 | 4.3:+26712296 | MS.gene053500:CDS |
| AGCACCGATCCCTGCTCCTA+TGG | 0.484318 | 4.3:-26712482 | None:intergenic |
| CCATCACTTGGCCAGTGGAT+TGG | 0.485537 | 4.3:+26712517 | MS.gene053500:CDS |
| GAAAAGAAGTAAACATAAGT+AGG | 0.487456 | 4.3:-26712149 | None:intergenic |
| GCCTTGCGAGTAGCTGATCT+AGG | 0.494720 | 4.3:-26712113 | None:intergenic |
| CCATTATGTTTCAGAGCGAA+TGG | 0.519354 | 4.3:+26711880 | MS.gene053500:CDS |
| TTATGATCTTACCAATCCAC+TGG | 0.520316 | 4.3:-26712528 | None:intergenic |
| CGCCGACAAAGCATTTCAAG+TGG | 0.520834 | 4.3:+26712703 | MS.gene053500:CDS |
| TTCGTCCATCACTTGGCCAG+TGG | 0.522512 | 4.3:+26712512 | MS.gene053500:CDS |
| GCTAGGAGTTGCAGCATCAT+GGG | 0.526174 | 4.3:+26712297 | MS.gene053500:CDS |
| GCCCTTACTTCAATAAGGTG+TGG | 0.528158 | 4.3:+26712439 | MS.gene053500:CDS |
| AGTTCAACTTCTTGGACAGA+AGG | 0.529384 | 4.3:+26712414 | MS.gene053500:CDS |
| TCTGCACGCGGCTCCAAAAG+AGG | 0.538832 | 4.3:-26710014 | None:intergenic |
| TGTGCTGCTGGTGATTTGGT+TGG | 0.542559 | 4.3:+26712659 | MS.gene053500:CDS |
| CAGCTACTCGCAAGGCTGCA+AGG | 0.544366 | 4.3:+26712120 | MS.gene053500:CDS |
| GCCTCCATAGGAGCAGGGAT+CGG | 0.554442 | 4.3:+26712478 | MS.gene053500:CDS |
| TCTTTCTAATATTCTTCGAG+TGG | 0.562654 | 4.3:-26711849 | None:intergenic |
| CCAATCCACTGGCCAAGTGA+TGG | 0.565048 | 4.3:-26712517 | None:intergenic |
| ATGGGTTGTTCAAGTAGGCA+TGG | 0.578157 | 4.3:+26712315 | MS.gene053500:CDS |
| GCATCATGGGTTGTTCAAGT+AGG | 0.587111 | 4.3:+26712310 | MS.gene053500:CDS |
| ATGTTTCAGAGCGAATGGCT+TGG | 0.594195 | 4.3:+26711885 | MS.gene053500:CDS |
| TTATGCACAGGACACATGCT+AGG | 0.599684 | 4.3:+26712280 | MS.gene053500:intron |
| ACCACACCTTATTGAAGTAA+GGG | 0.601634 | 4.3:-26712440 | None:intergenic |
| GGCCAAGTGATGGACGAACA+AGG | 0.608320 | 4.3:-26712507 | None:intergenic |
| ACCGATCCCTGCTCCTATGG+AGG | 0.615889 | 4.3:-26712479 | None:intergenic |
| TCCTAGATCAGCTACTCGCA+AGG | 0.622944 | 4.3:+26712112 | MS.gene053500:CDS |
| GCCAAGTGATGGACGAACAA+GGG | 0.637107 | 4.3:-26712506 | None:intergenic |
| AGATCTTCTATTTCTGCACG+CGG | 0.653709 | 4.3:-26710026 | None:intergenic |
| CTTATTTGAGAATATTACGG+AGG | 0.657164 | 4.3:+26710055 | MS.gene053500:CDS |
| GTGGGCAGAACAACATTCAG+AGG | 0.670489 | 4.3:+26712173 | MS.gene053500:CDS |
| TGTGAAGCAAATCATACGTG+AGG | 0.685919 | 4.3:+26710124 | MS.gene053500:CDS |
| AGGGAACAACCAGATCAACA+CGG | 0.751632 | 4.3:-26710091 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACATATTAATTGAGT+TGG | + | chr4.3:26710385-26710404 | MS.gene053500:intron | 15.0% |
| !! | ATAAGTATGAATTAAAAAGT+AGG | - | chr4.3:26710462-26710481 | None:intergenic | 15.0% |
| !!! | ATCTTGGTTTTATAATTTTA+AGG | + | chr4.3:26710870-26710889 | MS.gene053500:intron | 15.0% |
| !!! | TTATAATTTTAAGGAGTATA+TGG | + | chr4.3:26710879-26710898 | MS.gene053500:intron | 15.0% |
| !!! | TTTTTAATTCATACTTATGT+AGG | + | chr4.3:26710464-26710483 | MS.gene053500:intron | 15.0% |
| !! | AAAACTAATTGCTTGAAATT+TGG | - | chr4.3:26711566-26711585 | None:intergenic | 20.0% |
| !! | AGTTGAAATGAATTAAAATC+AGG | - | chr4.3:26712606-26712625 | None:intergenic | 20.0% |
| !! | GTCAAATAAGTTTCAAAAAT+TGG | - | chr4.3:26710986-26711005 | None:intergenic | 20.0% |
| !! | TATGAAAAATAAAGCAAAGA+AGG | - | chr4.3:26711276-26711295 | None:intergenic | 20.0% |
| !! | TGACTTATTTGAGAATATTA+CGG | + | chr4.3:26710052-26710071 | MS.gene053500:CDS | 20.0% |
| !!! | CATTTTTTTTTGTTTTCACT+CGG | + | chr4.3:26710239-26710258 | MS.gene053500:intron | 20.0% |
| !!! | TCTCATTTATTTTGAAATCT+TGG | + | chr4.3:26710854-26710873 | MS.gene053500:intron | 20.0% |
| !!! | TCTTGTTTTAACATTTAGTT+AGG | + | chr4.3:26710166-26710185 | MS.gene053500:intron | 20.0% |
| !!! | TTGACTTGGTAATTTAAAAA+CGG | + | chr4.3:26711752-26711771 | MS.gene053500:intron | 20.0% |
| ! | AAAAATAAAGCAAAGAAGGT+AGG | - | chr4.3:26711272-26711291 | None:intergenic | 25.0% |
| ! | AAAATAAAGCAAAGAAGGTA+GGG | - | chr4.3:26711271-26711290 | None:intergenic | 25.0% |
| ! | AAAGAAAATTTAGGTCTCTA+AGG | - | chr4.3:26711112-26711131 | None:intergenic | 25.0% |
| ! | AAGATAAGCTAAAAAACGAT+TGG | - | chr4.3:26710537-26710556 | None:intergenic | 25.0% |
| ! | AGAATAGAATATCATGAAAG+AGG | + | chr4.3:26711600-26711619 | MS.gene053500:intron | 25.0% |
| ! | AGTACCAGAAAAGAAAATTT+AGG | - | chr4.3:26711121-26711140 | None:intergenic | 25.0% |
| ! | CAACTTACTACTACTATAAT+TGG | - | chr4.3:26710700-26710719 | None:intergenic | 25.0% |
| ! | GAAAAGAAGTAAACATAAGT+AGG | - | chr4.3:26712152-26712171 | None:intergenic | 25.0% |
| ! | GAAGTAACATGAAATTGAAT+TGG | + | chr4.3:26711650-26711669 | MS.gene053500:intron | 25.0% |
| ! | TATTAAACTTTGACTGCTTT+AGG | - | chr4.3:26711988-26712007 | None:intergenic | 25.0% |
| ! | TGAACTATTATAGAGTAATG+TGG | - | chr4.3:26711372-26711391 | None:intergenic | 25.0% |
| !! | AAAACTTTGTTCTTCTTTTC+AGG | + | chr4.3:26712635-26712654 | MS.gene053500:intron | 25.0% |
| !! | ATAGTTGATATTAAATGCTC+AGG | - | chr4.3:26712239-26712258 | None:intergenic | 25.0% |
| !! | TACTCATTTCTTTTCTCAAA+TGG | - | chr4.3:26710617-26710636 | None:intergenic | 25.0% |
| !! | TATGTTTACTTCTTTTCTGT+GGG | + | chr4.3:26712155-26712174 | MS.gene053500:CDS | 25.0% |
| !! | TTACTAACTTGACTTGATAA+AGG | + | chr4.3:26710670-26710689 | MS.gene053500:intron | 25.0% |
| !! | TTATGTTTACTTCTTTTCTG+TGG | + | chr4.3:26712154-26712173 | MS.gene053500:CDS | 25.0% |
| AATTGAGCCCAATATCTTTA+AGG | + | chr4.3:26710800-26710819 | MS.gene053500:intron | 30.0% | |
| AGATAATTTACTTAGCGAAG+AGG | - | chr4.3:26710353-26710372 | None:intergenic | 30.0% | |
| AGGTTAACCAATTATTAGTG+TGG | + | chr4.3:26710744-26710763 | MS.gene053500:intron | 30.0% | |
| ATTGCTTGAAATTTGGAGAT+AGG | - | chr4.3:26711559-26711578 | None:intergenic | 30.0% | |
| CTTATTTGAGAATATTACGG+AGG | + | chr4.3:26710055-26710074 | MS.gene053500:CDS | 30.0% | |
| TAAAGATATTGGGCTCAATT+AGG | - | chr4.3:26710800-26710819 | None:intergenic | 30.0% | |
| TCTTTCTAATATTCTTCGAG+TGG | - | chr4.3:26711852-26711871 | None:intergenic | 30.0% | |
| TGAATCTCTAACTATGTGTA+TGG | + | chr4.3:26710498-26710517 | MS.gene053500:intron | 30.0% | |
| TTGCTTGAAATTTGGAGATA+GGG | - | chr4.3:26711558-26711577 | None:intergenic | 30.0% | |
| ! | ACTTCTTAAAGGTATGTTCT+CGG | + | chr4.3:26711910-26711929 | MS.gene053500:intron | 30.0% |
| ! | GAAGAACAAAGTTTTGCTTT+AGG | - | chr4.3:26712630-26712649 | None:intergenic | 30.0% |
| ! | GAGACCTAAATTTTCTTTTC+TGG | + | chr4.3:26711114-26711133 | MS.gene053500:intron | 30.0% |
| ! | TCTAGCTCCTTAAAGATATT+GGG | - | chr4.3:26710810-26710829 | None:intergenic | 30.0% |
| !!! | TTCTTTTTGAGTCTAAACAG+TGG | + | chr4.3:26711018-26711037 | MS.gene053500:intron | 30.0% |
| AAATGACAAGTCACGTTCTA+TGG | - | chr4.3:26710273-26710292 | None:intergenic | 35.0% | |
| AACCACACCTTATTGAAGTA+AGG | - | chr4.3:26712444-26712463 | None:intergenic | 35.0% | |
| AAGCATCCCTGAATATAACT+CGG | - | chr4.3:26711507-26711526 | None:intergenic | 35.0% | |
| AATGACAAGTCACGTTCTAT+GGG | - | chr4.3:26710272-26710291 | None:intergenic | 35.0% | |
| ACCACACCTTATTGAAGTAA+GGG | - | chr4.3:26712443-26712462 | None:intergenic | 35.0% | |
| ACTCTATGTTCATTATGCAC+AGG | + | chr4.3:26712268-26712287 | MS.gene053500:intron | 35.0% | |
| ATCTCTTCCGAGTTATATTC+AGG | + | chr4.3:26711497-26711516 | MS.gene053500:intron | 35.0% | |
| GAAGATCATCTGAGTAACAA+GGG | - | chr4.3:26711192-26711211 | None:intergenic | 35.0% | |
| GGATTAATCGAAGCTTAATG+AGG | - | chr4.3:26711409-26711428 | None:intergenic | 35.0% | |
| GTCCATCAGGAATATAGAAA+AGG | - | chr4.3:26711723-26711742 | None:intergenic | 35.0% | |
| GTGACATCCACACTAATAAT+TGG | - | chr4.3:26710754-26710773 | None:intergenic | 35.0% | |
| TAGCTTATCTTCTCCTCTTA+AGG | + | chr4.3:26710546-26710565 | MS.gene053500:intron | 35.0% | |
| TCTCTTCCGAGTTATATTCA+GGG | + | chr4.3:26711498-26711517 | MS.gene053500:intron | 35.0% | |
| TGAAGATCATCTGAGTAACA+AGG | - | chr4.3:26711193-26711212 | None:intergenic | 35.0% | |
| TTAGTGTGGATGTCACATTT+CGG | + | chr4.3:26710758-26710777 | MS.gene053500:intron | 35.0% | |
| TTATGATCTTACCAATCCAC+TGG | - | chr4.3:26712531-26712550 | None:intergenic | 35.0% | |
| TTGAAATTTGGAGATAGGGT+TGG | - | chr4.3:26711554-26711573 | None:intergenic | 35.0% | |
| ! | AGCTTTTACGGAAAATCGTT+TGG | - | chr4.3:26710582-26710601 | None:intergenic | 35.0% |
| ! | AGGCAGAAGCATAATTTGAT+GGG | - | chr4.3:26711242-26711261 | None:intergenic | 35.0% |
| ! | ATCGTCATTGGCATTGAAAA+TGG | - | chr4.3:26712362-26712381 | None:intergenic | 35.0% |
| ! | ATGGCTTGGAAACTTCTTAA+AGG | + | chr4.3:26711899-26711918 | MS.gene053500:CDS | 35.0% |
| ! | CAAGGCATCTCAAAAGTTTA+TGG | - | chr4.3:26711074-26711093 | None:intergenic | 35.0% |
| ! | CTCTAGCTCCTTAAAGATAT+TGG | - | chr4.3:26710811-26710830 | None:intergenic | 35.0% |
| ! | TGCCTTTTCTATATTCCTGA+TGG | + | chr4.3:26711718-26711737 | MS.gene053500:intron | 35.0% |
| ! | TGCTTCACAGACTTTTTGAA+GGG | - | chr4.3:26710113-26710132 | None:intergenic | 35.0% |
| ! | TTGCTTCACAGACTTTTTGA+AGG | - | chr4.3:26710114-26710133 | None:intergenic | 35.0% |
| !! | AATGAAGCTAAGGTTGATAG+TGG | + | chr4.3:26711047-26711066 | MS.gene053500:intron | 35.0% |
| !! | CATGAAAGAGGTGTTAAAGA+GGG | + | chr4.3:26711612-26711631 | MS.gene053500:intron | 35.0% |
| !! | TCATGAAAGAGGTGTTAAAG+AGG | + | chr4.3:26711611-26711630 | MS.gene053500:intron | 35.0% |
| !! | TTTTCTTTTCTGGTACTGCA+TGG | + | chr4.3:26711124-26711143 | MS.gene053500:intron | 35.0% |
| !!! | TAAACTTTTGAGATGCCTTG+AGG | + | chr4.3:26711074-26711093 | MS.gene053500:intron | 35.0% |
| !!! | TCTTTAGTTTTTGCCTCCAT+AGG | + | chr4.3:26712466-26712485 | MS.gene053500:CDS | 35.0% |
| AAAGAGGCAAATAGTGCATC+AGG | - | chr4.3:26710001-26710020 | None:intergenic | 40.0% | |
| ACCAAGCAAGTTCAACTTCT+TGG | + | chr4.3:26712406-26712425 | MS.gene053500:CDS | 40.0% | |
| AGGGAAAGATGCAAGACAAA+TGG | - | chr4.3:26711431-26711450 | None:intergenic | 40.0% | |
| AGGTTGCCCTTACTTCAATA+AGG | + | chr4.3:26712434-26712453 | MS.gene053500:CDS | 40.0% | |
| AGTTCAACTTCTTGGACAGA+AGG | + | chr4.3:26712414-26712433 | MS.gene053500:CDS | 40.0% | |
| AGTTTCCTTGTCAAGTGAAG+AGG | - | chr4.3:26711451-26711470 | None:intergenic | 40.0% | |
| ATGCCTTGAGGCTCAATAAA+TGG | + | chr4.3:26711086-26711105 | MS.gene053500:intron | 40.0% | |
| CCATTATGTTTCAGAGCGAA+TGG | + | chr4.3:26711880-26711899 | MS.gene053500:CDS | 40.0% | |
| CTTCACTTGACAAGGAAACT+CGG | + | chr4.3:26711451-26711470 | MS.gene053500:intron | 40.0% | |
| GATAAATGATGTTGAGCCAG+AGG | - | chr4.3:26711160-26711179 | None:intergenic | 40.0% | |
| GCGCAAAATGCTACAATGAT+TGG | - | chr4.3:26712686-26712705 | None:intergenic | 40.0% | |
| GGGAAAGATGCAAGACAAAT+GGG | - | chr4.3:26711430-26711449 | None:intergenic | 40.0% | |
| GTGGTGTAGTAATGAAGCTA+AGG | + | chr4.3:26711037-26711056 | MS.gene053500:intron | 40.0% | |
| GTTTCCTTGTCAAGTGAAGA+GGG | - | chr4.3:26711450-26711469 | None:intergenic | 40.0% | |
| TAGGTAAGCGTAGAGAAAAG+TGG | - | chr4.3:26710443-26710462 | None:intergenic | 40.0% | |
| TCAACAGAAAAGAGTCCATC+AGG | - | chr4.3:26711736-26711755 | None:intergenic | 40.0% | |
| TGGATGTCACATTTCGGTAT+TGG | + | chr4.3:26710764-26710783 | MS.gene053500:intron | 40.0% | |
| TGTGAAGCAAATCATACGTG+AGG | + | chr4.3:26710124-26710143 | MS.gene053500:CDS | 40.0% | |
| TTCACTTGACAAGGAAACTC+GGG | + | chr4.3:26711452-26711471 | MS.gene053500:intron | 40.0% | |
| ! | CAGGCAGAAGCATAATTTGA+TGG | - | chr4.3:26711243-26711262 | None:intergenic | 40.0% |
| ! | CATTCTTCCGAGAGCTTTTA+CGG | - | chr4.3:26710594-26710613 | None:intergenic | 40.0% |
| ! | CGATTTTCCGTAAAAGCTCT+CGG | + | chr4.3:26710584-26710603 | MS.gene053500:intron | 40.0% |
| ! | GAAACTCGGGATACAGTTTT+AGG | + | chr4.3:26711465-26711484 | MS.gene053500:intron | 40.0% |
| ! | GATGCACTATTTGCCTCTTT+TGG | + | chr4.3:26710001-26710020 | MS.gene053500:CDS | 40.0% |
| ! | TCCAAGAAGTTGAACTTGCT+TGG | - | chr4.3:26712410-26712429 | None:intergenic | 40.0% |
| ! | TGCCACTTGAAATGCTTTGT+CGG | - | chr4.3:26712708-26712727 | None:intergenic | 40.0% |
| !! | AGATCTTCTATTTCTGCACG+CGG | - | chr4.3:26710029-26710048 | None:intergenic | 40.0% |
| !! | CCATTCGCTCTGAAACATAA+TGG | - | chr4.3:26711883-26711902 | None:intergenic | 40.0% |
| !! | TGGACTCTTTTCTGTTGACT+TGG | + | chr4.3:26711738-26711757 | MS.gene053500:intron | 40.0% |
| ACTGTCTTCGTCATCGTCAT+TGG | - | chr4.3:26712374-26712393 | None:intergenic | 45.0% | |
| AGGCCATTTATTGAGCCTCA+AGG | - | chr4.3:26711092-26711111 | None:intergenic | 45.0% | |
| AGGGAACAACCAGATCAACA+CGG | - | chr4.3:26710094-26710113 | None:intergenic | 45.0% | |
| ATGTTTCAGAGCGAATGGCT+TGG | + | chr4.3:26711885-26711904 | MS.gene053500:CDS | 45.0% | |
| CTTTCCCTCTTCACTTGACA+AGG | + | chr4.3:26711443-26711462 | MS.gene053500:intron | 45.0% | |
| GAGCTCTATAAACAGCTGAG+TGG | - | chr4.3:26710944-26710963 | None:intergenic | 45.0% | |
| GCCCTTACTTCAATAAGGTG+TGG | + | chr4.3:26712439-26712458 | MS.gene053500:CDS | 45.0% | |
| TGGTTCAGCTTCTCCTTAAG+AGG | - | chr4.3:26710562-26710581 | None:intergenic | 45.0% | |
| TTATGCACAGGACACATGCT+AGG | + | chr4.3:26712280-26712299 | MS.gene053500:intron | 45.0% | |
| ! | ATGGGTTGTTCAAGTAGGCA+TGG | + | chr4.3:26712315-26712334 | MS.gene053500:CDS | 45.0% |
| ! | GCATCATGGGTTGTTCAAGT+AGG | + | chr4.3:26712310-26712329 | MS.gene053500:CDS | 45.0% |
| ! | TTTTTGCCTCCATAGGAGCA+GGG | + | chr4.3:26712473-26712492 | MS.gene053500:CDS | 45.0% |
| !! | AATTTGATGGGCTGATGACG+AGG | - | chr4.3:26711230-26711249 | None:intergenic | 45.0% |
| !! | TTCTTTTCAGGATGTGCTGC+TGG | + | chr4.3:26712647-26712666 | MS.gene053500:intron | 45.0% |
| ACCAGATCAACACGGTGTTC+TGG | - | chr4.3:26710086-26710105 | None:intergenic | 50.0% | |
| ACCCTTGTTCGTCCATCACT+TGG | + | chr4.3:26712505-26712524 | MS.gene053500:CDS | 50.0% | |
| GCTAGGAGTTGCAGCATCAT+GGG | + | chr4.3:26712297-26712316 | MS.gene053500:CDS | 50.0% | |
| GTGGGCAGAACAACATTCAG+AGG | + | chr4.3:26712173-26712192 | MS.gene053500:CDS | 50.0% | |
| GTTGAGCCAGAGGAGAAAAC+AGG | - | chr4.3:26711150-26711169 | None:intergenic | 50.0% | |
| TCCTAGATCAGCTACTCGCA+AGG | + | chr4.3:26712112-26712131 | MS.gene053500:CDS | 50.0% | |
| TGCTAGGAGTTGCAGCATCA+TGG | + | chr4.3:26712296-26712315 | MS.gene053500:CDS | 50.0% | |
| ! | AGGATGTGCTGCTGGTGATT+TGG | + | chr4.3:26712655-26712674 | MS.gene053500:intron | 50.0% |
| ! | CAAAGAAGGTAGGGAAGTGC+AGG | - | chr4.3:26711262-26711281 | None:intergenic | 50.0% |
| ! | CGCCGACAAAGCATTTCAAG+TGG | + | chr4.3:26712703-26712722 | MS.gene053500:CDS | 50.0% |
| ! | GTTTTTGCCTCCATAGGAGC+AGG | + | chr4.3:26712472-26712491 | MS.gene053500:CDS | 50.0% |
| !! | GCCAAGTGATGGACGAACAA+GGG | - | chr4.3:26712509-26712528 | None:intergenic | 50.0% |
| !! | TGTGCTGCTGGTGATTTGGT+TGG | + | chr4.3:26712659-26712678 | MS.gene053500:CDS | 50.0% |
| CCAATCCACTGGCCAAGTGA+TGG | - | chr4.3:26712520-26712539 | None:intergenic | 55.0% | |
| CCATCACTTGGCCAGTGGAT+TGG | + | chr4.3:26712517-26712536 | MS.gene053500:CDS | 55.0% | |
| GCCTTGCGAGTAGCTGATCT+AGG | - | chr4.3:26712116-26712135 | None:intergenic | 55.0% | |
| TTCGTCCATCACTTGGCCAG+TGG | + | chr4.3:26712512-26712531 | MS.gene053500:CDS | 55.0% | |
| ! | GCATGGCCTGTTTTCTCCTC+TGG | + | chr4.3:26711141-26711160 | MS.gene053500:intron | 55.0% |
| ! | GCCAGAACACCGTGTTGATC+TGG | + | chr4.3:26710082-26710101 | MS.gene053500:CDS | 55.0% |
| !! | GGCCAAGTGATGGACGAACA+AGG | - | chr4.3:26712510-26712529 | None:intergenic | 55.0% |
| ACCGATCCCTGCTCCTATGG+AGG | - | chr4.3:26712482-26712501 | None:intergenic | 60.0% | |
| CAGCTACTCGCAAGGCTGCA+AGG | + | chr4.3:26712120-26712139 | MS.gene053500:CDS | 60.0% | |
| GCCTCCATAGGAGCAGGGAT+CGG | + | chr4.3:26712478-26712497 | MS.gene053500:CDS | 60.0% | |
| TCTGCACGCGGCTCCAAAAG+AGG | - | chr4.3:26710017-26710036 | None:intergenic | 60.0% | |
| !! | AGCACCGATCCCTGCTCCTA+TGG | - | chr4.3:26712485-26712504 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 26709978 | 26712733 | 26709978 | ID=MS.gene053500 |
| chr4.3 | mRNA | 26709978 | 26712733 | 26709978 | ID=MS.gene053500.t1;Parent=MS.gene053500 |
| chr4.3 | exon | 26709978 | 26710145 | 26709978 | ID=MS.gene053500.t1.exon1;Parent=MS.gene053500.t1 |
| chr4.3 | CDS | 26709978 | 26710145 | 26709978 | ID=cds.MS.gene053500.t1;Parent=MS.gene053500.t1 |
| chr4.3 | exon | 26711836 | 26711920 | 26711836 | ID=MS.gene053500.t1.exon2;Parent=MS.gene053500.t1 |
| chr4.3 | CDS | 26711836 | 26711920 | 26711836 | ID=cds.MS.gene053500.t1;Parent=MS.gene053500.t1 |
| chr4.3 | exon | 26712108 | 26712194 | 26712108 | ID=MS.gene053500.t1.exon3;Parent=MS.gene053500.t1 |
| chr4.3 | CDS | 26712108 | 26712194 | 26712108 | ID=cds.MS.gene053500.t1;Parent=MS.gene053500.t1 |
| chr4.3 | exon | 26712290 | 26712538 | 26712290 | ID=MS.gene053500.t1.exon4;Parent=MS.gene053500.t1 |
| chr4.3 | CDS | 26712290 | 26712538 | 26712290 | ID=cds.MS.gene053500.t1;Parent=MS.gene053500.t1 |
| chr4.3 | exon | 26712657 | 26712733 | 26712657 | ID=MS.gene053500.t1.exon5;Parent=MS.gene053500.t1 |
| chr4.3 | CDS | 26712657 | 26712733 | 26712657 | ID=cds.MS.gene053500.t1;Parent=MS.gene053500.t1 |
| Gene Sequence |
| Protein sequence |
