Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26717.t1 | XP_003609971.1 | 86.8 | 204 | 27 | 0 | 119 | 322 | 50 | 253 | 5.90E-91 | 344.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26717.t1 | O65282 | 75.5 | 204 | 50 | 0 | 119 | 322 | 50 | 253 | 1.1e-82 | 308.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26717.t1 | G7JS70 | 86.8 | 204 | 27 | 0 | 119 | 322 | 50 | 253 | 4.2e-91 | 344.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057452 | MS.gene26717 | -0.806471 | 8.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26717.t1 | MTR_4g124910 | 89.394 | 198 | 21 | 0 | 125 | 322 | 56 | 253 | 2.43e-125 | 359 |
| MS.gene26717.t1 | MTR_2g043230 | 76.263 | 198 | 47 | 0 | 125 | 322 | 57 | 254 | 2.86e-109 | 318 |
| MS.gene26717.t1 | MTR_3g110030 | 40.000 | 95 | 55 | 2 | 227 | 321 | 3 | 95 | 1.72e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26717.t1 | AT5G20720 | 75.490 | 204 | 50 | 0 | 119 | 322 | 50 | 253 | 1.18e-109 | 319 |
| MS.gene26717.t1 | AT5G20720 | 75.490 | 204 | 50 | 0 | 119 | 322 | 50 | 253 | 1.18e-109 | 319 |
| MS.gene26717.t1 | AT5G20720 | 75.490 | 204 | 50 | 0 | 119 | 322 | 50 | 253 | 1.18e-109 | 319 |
| MS.gene26717.t1 | AT5G20720 | 75.490 | 204 | 50 | 0 | 119 | 322 | 50 | 253 | 1.18e-109 | 319 |
| MS.gene26717.t1 | AT1G23100 | 40.000 | 95 | 55 | 2 | 227 | 321 | 3 | 95 | 4.23e-11 | 59.3 |
| MS.gene26717.t1 | AT1G14980 | 39.583 | 96 | 56 | 2 | 226 | 321 | 2 | 95 | 9.48e-11 | 58.5 |
Find 88 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGACGCATGTTCTTGTTCT+TGG | 0.195656 | 8.2:-8747649 | None:intergenic |
| GAAGTCATTCCCTGCATATT+TGG | 0.259970 | 8.2:-8749467 | None:intergenic |
| CAACCATTGTGTTGGGAATT+CGG | 0.286046 | 8.2:+8747595 | MS.gene26717:CDS |
| GGGACTGAGGTGGAGTTTAA+TGG | 0.297759 | 8.2:+8748624 | MS.gene26717:CDS |
| CATTTGGCTATTCATTTACT+TGG | 0.309092 | 8.2:+8748050 | MS.gene26717:CDS |
| TAACCAGAGTATCTGCGATT+TGG | 0.310109 | 8.2:+8748019 | MS.gene26717:intron |
| CGATTTGGATTCGGATCATT+TGG | 0.313466 | 8.2:+8748034 | MS.gene26717:CDS |
| TGTCCTTGTGTCGGCTCGTT+TGG | 0.320648 | 8.2:-8747564 | None:intergenic |
| AACTGTATTCCCGGGTGAAA+TGG | 0.321202 | 8.2:-8749437 | None:intergenic |
| TCTGTTGAAGTAGCAGAATT+TGG | 0.330624 | 8.2:-8747803 | None:intergenic |
| CTCATTCACATTACATTTGA+GGG | 0.359053 | 8.2:-8748084 | None:intergenic |
| TTCCCGGGTGAAATGGATAA+TGG | 0.363835 | 8.2:-8749430 | None:intergenic |
| GGACGCATGTTCTTGTTCTT+GGG | 0.373000 | 8.2:-8747648 | None:intergenic |
| TTTAAGATCTTTGACCTCTT+CGG | 0.402758 | 8.2:-8748697 | None:intergenic |
| GAGTATCTGCGATTTGGATT+CGG | 0.413562 | 8.2:+8748025 | MS.gene26717:intron |
| GGAGTACAAAACTGTATTCC+CGG | 0.420138 | 8.2:-8749446 | None:intergenic |
| TATCAAGACTCTGTCATTCA+AGG | 0.421253 | 8.2:-8748721 | None:intergenic |
| GTCTAGTGCTCCTGCTCCCC+AGG | 0.426676 | 8.2:+8748145 | MS.gene26717:CDS |
| CCTCATTCACATTACATTTG+AGG | 0.432200 | 8.2:-8748085 | None:intergenic |
| TTGGTGAAGGGAAGATAGTT+GGG | 0.441458 | 8.2:+8748456 | MS.gene26717:CDS |
| AACATCATCAATTCTCCTCT+TGG | 0.446362 | 8.2:-8747516 | None:intergenic |
| CAGGTGATAGCTGTTGGTCC+AGG | 0.450591 | 8.2:+8749379 | MS.gene26717:intron |
| TCAATTAATACCTGGGGAGC+AGG | 0.454838 | 8.2:-8748155 | None:intergenic |
| AGAATTTGGTGATGAGGAGG+AGG | 0.457837 | 8.2:-8747789 | None:intergenic |
| GAGGTAGTTGCTGTTGGTGA+AGG | 0.466430 | 8.2:+8748443 | MS.gene26717:CDS |
| GGAACTTCAACCATTGTGTT+GGG | 0.471560 | 8.2:+8747588 | MS.gene26717:CDS |
| ATGAAGGATGGTGACATAAT+CGG | 0.472006 | 8.2:+8748663 | MS.gene26717:CDS |
| GAATGACAGAGTCTTGATAA+AGG | 0.473936 | 8.2:+8748725 | MS.gene26717:CDS |
| GGATGTAGATGAGAATGCTC+AGG | 0.484558 | 8.2:+8748373 | MS.gene26717:CDS |
| GCCAATGGATGGTTTATCCT+TGG | 0.486706 | 8.2:-8748954 | None:intergenic |
| TCGGCTCGTTTGGCAAGTCT+TGG | 0.490527 | 8.2:-8747554 | None:intergenic |
| TTCAAAACATCTTATAATGA+AGG | 0.492414 | 8.2:+8748647 | MS.gene26717:CDS |
| GAAGTTCCTTGTCCTTGTGT+CGG | 0.496763 | 8.2:-8747573 | None:intergenic |
| AGCAGAATTTGGTGATGAGG+AGG | 0.502740 | 8.2:-8747792 | None:intergenic |
| ATGGTGACGAAATGGTGATC+AGG | 0.507696 | 8.2:+8747618 | MS.gene26717:CDS |
| AATGACTTCAAAGGCAAAGA+TGG | 0.508584 | 8.2:+8749481 | MS.gene26717:CDS |
| AATGAAATTAATTACCACTA+CGG | 0.509196 | 8.2:-8747669 | None:intergenic |
| AGGAACTTCAACCATTGTGT+TGG | 0.514929 | 8.2:+8747587 | MS.gene26717:CDS |
| GTTGGTGAAGGGAAGATAGT+TGG | 0.517422 | 8.2:+8748455 | MS.gene26717:CDS |
| ATCAAGACTCTGTCATTCAA+GGG | 0.529761 | 8.2:-8748720 | None:intergenic |
| TGCAAAATCTAAGACTCAAG+GGG | 0.535600 | 8.2:+8748418 | MS.gene26717:CDS |
| AAGCTTACCGTGCCAATGGA+TGG | 0.540714 | 8.2:-8748965 | None:intergenic |
| AGAAAAGCTTACCGTGCCAA+TGG | 0.548046 | 8.2:-8748969 | None:intergenic |
| CATACAAATGTCAAGCCACT+AGG | 0.558442 | 8.2:+8748326 | MS.gene26717:CDS |
| GTTGTGTACTCAAAGTATGC+AGG | 0.559782 | 8.2:+8748603 | MS.gene26717:CDS |
| AGCTGTTGGTCCAGGGTCTG+TGG | 0.560565 | 8.2:+8749387 | MS.gene26717:CDS |
| AGTAGCAGAATTTGGTGATG+AGG | 0.563075 | 8.2:-8747795 | None:intergenic |
| TATGCAGGGAATGACTTCAA+AGG | 0.569312 | 8.2:+8749472 | MS.gene26717:CDS |
| TTTGAGAGCCTCAGATGTCA+TGG | 0.571249 | 8.2:+8749519 | MS.gene26717:CDS |
| GAGTACAAAACTGTATTCCC+GGG | 0.572521 | 8.2:-8749445 | None:intergenic |
| GAATTCGGATGGTGACGAAA+TGG | 0.574418 | 8.2:+8747610 | MS.gene26717:CDS |
| CCTCAAATGTAATGTGAATG+AGG | 0.574692 | 8.2:+8748085 | MS.gene26717:CDS |
| CTGCAAAATCTAAGACTCAA+GGG | 0.578020 | 8.2:+8748417 | MS.gene26717:CDS |
| ACTGCAAAATCTAAGACTCA+AGG | 0.579448 | 8.2:+8748416 | MS.gene26717:CDS |
| AGGTGATAGCTGTTGGTCCA+GGG | 0.581154 | 8.2:+8749380 | MS.gene26717:intron |
| AAACATCTTATAATGAAGGA+TGG | 0.584384 | 8.2:+8748651 | MS.gene26717:CDS |
| AACGAGCCGACACAAGGACA+AGG | 0.586233 | 8.2:+8747567 | MS.gene26717:CDS |
| ACCAAGGATAAACCATCCAT+TGG | 0.591168 | 8.2:+8748953 | MS.gene26717:CDS |
| AAACCATTATCCATTTCACC+CGG | 0.592297 | 8.2:+8749427 | MS.gene26717:CDS |
| AGGTAGTTGCTGTTGGTGAA+GGG | 0.595320 | 8.2:+8748444 | MS.gene26717:CDS |
| CCTTCGTCATCCACAGACCC+TGG | 0.602742 | 8.2:-8749397 | None:intergenic |
| CAAAGTGGACATTAGTGTGA+AGG | 0.607471 | 8.2:+8748484 | MS.gene26717:CDS |
| TTGCCAAACGAGCCGACACA+AGG | 0.608263 | 8.2:+8747561 | MS.gene26717:CDS |
| TTGTGTACTCAAAGTATGCA+GGG | 0.609132 | 8.2:+8748604 | MS.gene26717:CDS |
| TGTTGGTGGTTTGTTGCTCA+CGG | 0.613606 | 8.2:+8748925 | MS.gene26717:CDS |
| CATTGTGTTGGGAATTCGGA+TGG | 0.621027 | 8.2:+8747599 | MS.gene26717:CDS |
| AAAATAACCAAAATTAAGAG+AGG | 0.622578 | 8.2:-8749546 | None:intergenic |
| GTTGCTCACGGAAGCAACCA+AGG | 0.626344 | 8.2:+8748937 | MS.gene26717:CDS |
| CTCAAAGTATGCAGGGACTG+AGG | 0.626745 | 8.2:+8748611 | MS.gene26717:CDS |
| AAAGTATGCAGGGACTGAGG+TGG | 0.626825 | 8.2:+8748614 | MS.gene26717:CDS |
| ACTAGCACTCTATCACCTAG+TGG | 0.628064 | 8.2:-8748341 | None:intergenic |
| GAGGATAGCCATGACATCTG+AGG | 0.634831 | 8.2:-8749527 | None:intergenic |
| ACAAGAACATGCGTCCGTAG+TGG | 0.636103 | 8.2:+8747655 | MS.gene26717:CDS |
| AACCATTATCCATTTCACCC+GGG | 0.641591 | 8.2:+8749428 | MS.gene26717:CDS |
| CGGTATTCTTGAAACCGAAG+AGG | 0.646152 | 8.2:+8748683 | MS.gene26717:CDS |
| CCAGGGTCTGTGGATGACGA+AGG | 0.646687 | 8.2:+8749397 | MS.gene26717:CDS |
| GATGTAGATGAGAATGCTCA+GGG | 0.648799 | 8.2:+8748374 | MS.gene26717:CDS |
| GGATAAACCATCCATTGGCA+CGG | 0.651372 | 8.2:+8748958 | MS.gene26717:CDS |
| GAGGAAGATGAAGACGCACA+AGG | 0.656167 | 8.2:-8747770 | None:intergenic |
| TCTTCACCACGATGACCAAG+AGG | 0.657254 | 8.2:+8747501 | None:intergenic |
| AGAGTCAGTCTCTACTACAG+AGG | 0.657463 | 8.2:+8748121 | MS.gene26717:CDS |
| CATCCGAATTCCCAACACAA+TGG | 0.669705 | 8.2:-8747598 | None:intergenic |
| GCTGCAGGTTGCAGAAGCTG+AGG | 0.680718 | 8.2:+8748895 | MS.gene26717:intron |
| ATGTAACAGGTGATAGCTGT+TGG | 0.691284 | 8.2:+8749373 | MS.gene26717:intron |
| GCAAAATCTAAGACTCAAGG+GGG | 0.701499 | 8.2:+8748419 | MS.gene26717:CDS |
| GATAGTTGGGAAGAACAAAG+TGG | 0.705798 | 8.2:+8748469 | MS.gene26717:CDS |
| GTAGATGAGAATGCTCAGGG+TGG | 0.735033 | 8.2:+8748377 | MS.gene26717:CDS |
| TACTTCAACAGAAACCACCA+TGG | 0.737159 | 8.2:+8747814 | MS.gene26717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAAAAAATTAAAACAA+TGG | + | chr8.2:8749108-8749127 | MS.gene26717:intron | 10.0% |
| !!! | TTTTTATTTTTCATTCTTTT+TGG | + | chr8.2:8747706-8747725 | MS.gene26717:intron | 10.0% |
| !! | GTTAAGACAAATAATTAAAT+GGG | - | chr8.2:8748807-8748826 | None:intergenic | 15.0% |
| !! | TCATATTGTTTAATAATGAT+CGG | + | chr8.2:8748191-8748210 | MS.gene26717:intron | 15.0% |
| !! | AATGAAATTAATTACCACTA+CGG | - | chr8.2:8747672-8747691 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAAACAATGGA+TGG | + | chr8.2:8749112-8749131 | MS.gene26717:intron | 20.0% |
| !! | CATATTGTTTAATAATGATC+GGG | + | chr8.2:8748192-8748211 | MS.gene26717:intron | 20.0% |
| !! | GATCATTATTAAACAATATG+AGG | - | chr8.2:8748192-8748211 | None:intergenic | 20.0% |
| !! | GGTTAAGACAAATAATTAAA+TGG | - | chr8.2:8748808-8748827 | None:intergenic | 20.0% |
| !! | TTCAAAACATCTTATAATGA+AGG | + | chr8.2:8748647-8748666 | MS.gene26717:CDS | 20.0% |
| !!! | AAGTATACTGTTTCTAAAAA+AGG | - | chr8.2:8749000-8749019 | None:intergenic | 20.0% |
| ! | AAACATCTTATAATGAAGGA+TGG | + | chr8.2:8748651-8748670 | MS.gene26717:CDS | 25.0% |
| ! | AAATCATCAATTAATACCTG+GGG | - | chr8.2:8748164-8748183 | None:intergenic | 25.0% |
| ! | AAATGGTTATTTACATACCT+AGG | - | chr8.2:8749341-8749360 | None:intergenic | 25.0% |
| ! | AAGAAAAATGAAGATTACCA+TGG | - | chr8.2:8747834-8747853 | None:intergenic | 25.0% |
| ! | ACAAATCATCAATTAATACC+TGG | - | chr8.2:8748166-8748185 | None:intergenic | 25.0% |
| ! | CAAATCATCAATTAATACCT+GGG | - | chr8.2:8748165-8748184 | None:intergenic | 25.0% |
| ! | CACAAAAATTAAATGCACAA+CGG | - | chr8.2:8749166-8749185 | None:intergenic | 25.0% |
| ! | CCAATTCATCAATAACTAAT+GGG | - | chr8.2:8747732-8747751 | None:intergenic | 25.0% |
| ! | GTATGTGTTTGAATCAAATT+TGG | + | chr8.2:8747866-8747885 | MS.gene26717:intron | 25.0% |
| ! | TAACACCTTAATGCAAAATA+TGG | - | chr8.2:8748829-8748848 | None:intergenic | 25.0% |
| ! | TGTAATGTATTTCTCTTTAC+AGG | + | chr8.2:8748569-8748588 | MS.gene26717:intron | 25.0% |
| !! | CTTAACCATATTTTGCATTA+AGG | + | chr8.2:8748821-8748840 | MS.gene26717:intron | 25.0% |
| !! | TAGAGTGCTAGTAAAAATAA+AGG | + | chr8.2:8748352-8748371 | MS.gene26717:CDS | 25.0% |
| !! | TCAAATTTGGTTTATGATAG+AGG | + | chr8.2:8747879-8747898 | MS.gene26717:intron | 25.0% |
| !! | TTTATTTATTGCTTTAGCTC+AGG | + | chr8.2:8749256-8749275 | MS.gene26717:intron | 25.0% |
| AAAAATGAAGATTACCATGG+TGG | - | chr8.2:8747831-8747850 | None:intergenic | 30.0% | |
| AAACACTAGAAATAATCCCA+TGG | - | chr8.2:8748245-8748264 | None:intergenic | 30.0% | |
| AACACTAGAAATAATCCCAT+GGG | - | chr8.2:8748244-8748263 | None:intergenic | 30.0% | |
| AATAACCATTTGACTCCATT+TGG | + | chr8.2:8749350-8749369 | MS.gene26717:intron | 30.0% | |
| AGAATTGCAAGAATGTGATT+TGG | + | chr8.2:8749081-8749100 | MS.gene26717:intron | 30.0% | |
| AGATACTCTGGTTAATCAAT+CGG | - | chr8.2:8748013-8748032 | None:intergenic | 30.0% | |
| CATTTGGCTATTCATTTACT+TGG | + | chr8.2:8748050-8748069 | MS.gene26717:CDS | 30.0% | |
| CCAAAATAAAAGAAAGACCA+AGG | - | chr8.2:8748544-8748563 | None:intergenic | 30.0% | |
| CCCATTAGTTATTGATGAAT+TGG | + | chr8.2:8747729-8747748 | MS.gene26717:intron | 30.0% | |
| CTCATTCACATTACATTTGA+GGG | - | chr8.2:8748087-8748106 | None:intergenic | 30.0% | |
| GAATTGCAAGAATGTGATTT+GGG | + | chr8.2:8749082-8749101 | MS.gene26717:intron | 30.0% | |
| GCAATGTTATATCGTATGAA+GGG | + | chr8.2:8749049-8749068 | MS.gene26717:intron | 30.0% | |
| GCCAATTCATCAATAACTAA+TGG | - | chr8.2:8747733-8747752 | None:intergenic | 30.0% | |
| ! | CATTAAGGTGTTACGTTTAA+AGG | + | chr8.2:8748836-8748855 | MS.gene26717:intron | 30.0% |
| ! | TTTAAGATCTTTGACCTCTT+CGG | - | chr8.2:8748700-8748719 | None:intergenic | 30.0% |
| ! | TTTTGTACTCCAAATATGCA+GGG | + | chr8.2:8749458-8749477 | MS.gene26717:CDS | 30.0% |
| !! | ATTGATGAATTGGCTTTATC+AGG | + | chr8.2:8747739-8747758 | MS.gene26717:intron | 30.0% |
| !! | CCTTGGTCTTTCTTTTATTT+TGG | + | chr8.2:8748541-8748560 | MS.gene26717:intron | 30.0% |
| !!! | TTGTTTTGATCGAGTAGTTT+TGG | + | chr8.2:8749314-8749333 | MS.gene26717:intron | 30.0% |
| AAACCATTATCCATTTCACC+CGG | + | chr8.2:8749427-8749446 | MS.gene26717:CDS | 35.0% | |
| AAAGAAAGACCAAGGCTTAA+AGG | - | chr8.2:8748536-8748555 | None:intergenic | 35.0% | |
| AACACATTCTACCGTCTTAA+GGG | - | chr8.2:8749211-8749230 | None:intergenic | 35.0% | |
| AACATCATCAATTCTCCTCT+TGG | - | chr8.2:8747519-8747538 | None:intergenic | 35.0% | |
| AATGACTTCAAAGGCAAAGA+TGG | + | chr8.2:8749481-8749500 | MS.gene26717:CDS | 35.0% | |
| ACCTGCAGCATCATAATTAA+AGG | - | chr8.2:8748884-8748903 | None:intergenic | 35.0% | |
| ACTAGCATTATCCCTTAAGA+CGG | + | chr8.2:8749197-8749216 | MS.gene26717:intron | 35.0% | |
| ATCAAGACTCTGTCATTCAA+GGG | - | chr8.2:8748723-8748742 | None:intergenic | 35.0% | |
| ATGAAGGATGGTGACATAAT+CGG | + | chr8.2:8748663-8748682 | MS.gene26717:CDS | 35.0% | |
| ATGTATTTCTCTTTACAGGC+AGG | + | chr8.2:8748573-8748592 | MS.gene26717:intron | 35.0% | |
| CCTCAAATGTAATGTGAATG+AGG | + | chr8.2:8748085-8748104 | MS.gene26717:CDS | 35.0% | |
| CCTCATTCACATTACATTTG+AGG | - | chr8.2:8748088-8748107 | None:intergenic | 35.0% | |
| GAATGACAGAGTCTTGATAA+AGG | + | chr8.2:8748725-8748744 | MS.gene26717:CDS | 35.0% | |
| GGCAATGTTATATCGTATGA+AGG | + | chr8.2:8749048-8749067 | MS.gene26717:intron | 35.0% | |
| TAAAGGATTCCATAAGCTAG+TGG | - | chr8.2:8748519-8748538 | None:intergenic | 35.0% | |
| TAATAATGATCGGGCATTTG+TGG | + | chr8.2:8748201-8748220 | MS.gene26717:intron | 35.0% | |
| TACATCCAAATGGAGTCAAA+TGG | - | chr8.2:8749358-8749377 | None:intergenic | 35.0% | |
| TATCAAGACTCTGTCATTCA+AGG | - | chr8.2:8748724-8748743 | None:intergenic | 35.0% | |
| TATCACCTGTTACATCCAAA+TGG | - | chr8.2:8749368-8749387 | None:intergenic | 35.0% | |
| TCTGTTGAAGTAGCAGAATT+TGG | - | chr8.2:8747806-8747825 | None:intergenic | 35.0% | |
| TTAAAACAATGGATGGTCTG+TGG | + | chr8.2:8749119-8749138 | MS.gene26717:intron | 35.0% | |
| TTATGGAATCCTTTAAGCCT+TGG | + | chr8.2:8748524-8748543 | MS.gene26717:intron | 35.0% | |
| TTGTGTACTCAAAGTATGCA+GGG | + | chr8.2:8748604-8748623 | MS.gene26717:CDS | 35.0% | |
| ! | AACACCACTCTTCTAAAAGA+GGG | + | chr8.2:8749027-8749046 | MS.gene26717:intron | 35.0% |
| ! | ACTGCAAAATCTAAGACTCA+AGG | + | chr8.2:8748416-8748435 | MS.gene26717:CDS | 35.0% |
| ! | CTGCAAAATCTAAGACTCAA+GGG | + | chr8.2:8748417-8748436 | MS.gene26717:CDS | 35.0% |
| ! | GTTTTGTACTCCAAATATGC+AGG | + | chr8.2:8749457-8749476 | MS.gene26717:CDS | 35.0% |
| ! | TAACACCACTCTTCTAAAAG+AGG | + | chr8.2:8749026-8749045 | MS.gene26717:intron | 35.0% |
| ! | TGCAAAATCTAAGACTCAAG+GGG | + | chr8.2:8748418-8748437 | MS.gene26717:CDS | 35.0% |
| !! | ACAAGATGAAAGTACCAATC+AGG | - | chr8.2:8748304-8748323 | None:intergenic | 35.0% |
| AACCATTATCCATTTCACCC+GGG | + | chr8.2:8749428-8749447 | MS.gene26717:CDS | 40.0% | |
| AATCCAAATCGCAGATACTC+TGG | - | chr8.2:8748025-8748044 | None:intergenic | 40.0% | |
| ACAGAGTCTTGATAAAGGTG+TGG | + | chr8.2:8748730-8748749 | MS.gene26717:intron | 40.0% | |
| ACCAAGGATAAACCATCCAT+TGG | + | chr8.2:8748953-8748972 | MS.gene26717:CDS | 40.0% | |
| AGGAACTTCAACCATTGTGT+TGG | + | chr8.2:8747587-8747606 | MS.gene26717:CDS | 40.0% | |
| ATGTAACAGGTGATAGCTGT+TGG | + | chr8.2:8749373-8749392 | MS.gene26717:intron | 40.0% | |
| CAAAGTGGACATTAGTGTGA+AGG | + | chr8.2:8748484-8748503 | MS.gene26717:CDS | 40.0% | |
| CAACACATTCTACCGTCTTA+AGG | - | chr8.2:8749212-8749231 | None:intergenic | 40.0% | |
| CAACCATTGTGTTGGGAATT+CGG | + | chr8.2:8747595-8747614 | MS.gene26717:CDS | 40.0% | |
| CATACAAATGTCAAGCCACT+AGG | + | chr8.2:8748326-8748345 | MS.gene26717:CDS | 40.0% | |
| GAAGCTGAGGAAAAAACTGT+TGG | + | chr8.2:8748908-8748927 | MS.gene26717:CDS | 40.0% | |
| GAAGTCATTCCCTGCATATT+TGG | - | chr8.2:8749470-8749489 | None:intergenic | 40.0% | |
| GAGTACAAAACTGTATTCCC+GGG | - | chr8.2:8749448-8749467 | None:intergenic | 40.0% | |
| GATAGTTGGGAAGAACAAAG+TGG | + | chr8.2:8748469-8748488 | MS.gene26717:CDS | 40.0% | |
| GATGTAGATGAGAATGCTCA+GGG | + | chr8.2:8748374-8748393 | MS.gene26717:CDS | 40.0% | |
| GCCTTTAATTATGATGCTGC+AGG | + | chr8.2:8748880-8748899 | MS.gene26717:intron | 40.0% | |
| GGAACTTCAACCATTGTGTT+GGG | + | chr8.2:8747588-8747607 | MS.gene26717:CDS | 40.0% | |
| GGAGTACAAAACTGTATTCC+CGG | - | chr8.2:8749449-8749468 | None:intergenic | 40.0% | |
| GGCATTTGTGGTTAAGTTTG+TGG | + | chr8.2:8748213-8748232 | MS.gene26717:intron | 40.0% | |
| GTTGTGTACTCAAAGTATGC+AGG | + | chr8.2:8748603-8748622 | MS.gene26717:CDS | 40.0% | |
| TACTTCAACAGAAACCACCA+TGG | + | chr8.2:8747814-8747833 | MS.gene26717:CDS | 40.0% | |
| TAGAAATAATCCCATGGGTC+AGG | - | chr8.2:8748239-8748258 | None:intergenic | 40.0% | |
| TATGCAGGGAATGACTTCAA+AGG | + | chr8.2:8749472-8749491 | MS.gene26717:CDS | 40.0% | |
| TGACTCCATTTGGATGTAAC+AGG | + | chr8.2:8749360-8749379 | MS.gene26717:intron | 40.0% | |
| TTGGTGAAGGGAAGATAGTT+GGG | + | chr8.2:8748456-8748475 | MS.gene26717:CDS | 40.0% | |
| ! | ATTGCTTTAGCTCAGGTCAT+TGG | + | chr8.2:8749263-8749282 | MS.gene26717:intron | 40.0% |
| ! | CGATTTGGATTCGGATCATT+TGG | + | chr8.2:8748034-8748053 | MS.gene26717:CDS | 40.0% |
| ! | GAGTATCTGCGATTTGGATT+CGG | + | chr8.2:8748025-8748044 | MS.gene26717:intron | 40.0% |
| ! | GCAAAATCTAAGACTCAAGG+GGG | + | chr8.2:8748419-8748438 | MS.gene26717:CDS | 40.0% |
| ! | TAACCAGAGTATCTGCGATT+TGG | + | chr8.2:8748019-8748038 | MS.gene26717:intron | 40.0% |
| ! | TTTAGCTCAGGTCATTGGTT+TGG | + | chr8.2:8749268-8749287 | MS.gene26717:intron | 40.0% |
| !! | AGTAGCAGAATTTGGTGATG+AGG | - | chr8.2:8747798-8747817 | None:intergenic | 40.0% |
| !! | ATTGCCCTCTTTTAGAAGAG+TGG | - | chr8.2:8749034-8749053 | None:intergenic | 40.0% |
| !! | GAAAGTACCAATCAGGCATA+GGG | - | chr8.2:8748297-8748316 | None:intergenic | 40.0% |
| !! | TGAAAGTACCAATCAGGCAT+AGG | - | chr8.2:8748298-8748317 | None:intergenic | 40.0% |
| AACTGTATTCCCGGGTGAAA+TGG | - | chr8.2:8749440-8749459 | None:intergenic | 45.0% | |
| AATGCTACCCTATGCCTGAT+TGG | + | chr8.2:8748287-8748306 | MS.gene26717:intron | 45.0% | |
| ACTAGCACTCTATCACCTAG+TGG | - | chr8.2:8748344-8748363 | None:intergenic | 45.0% | |
| AGAAAAGCTTACCGTGCCAA+TGG | - | chr8.2:8748972-8748991 | None:intergenic | 45.0% | |
| AGAGTCAGTCTCTACTACAG+AGG | + | chr8.2:8748121-8748140 | MS.gene26717:CDS | 45.0% | |
| CATCCGAATTCCCAACACAA+TGG | - | chr8.2:8747601-8747620 | None:intergenic | 45.0% | |
| CATTGTGTTGGGAATTCGGA+TGG | + | chr8.2:8747599-8747618 | MS.gene26717:CDS | 45.0% | |
| CGGTATTCTTGAAACCGAAG+AGG | + | chr8.2:8748683-8748702 | MS.gene26717:CDS | 45.0% | |
| GAAGTTCCTTGTCCTTGTGT+CGG | - | chr8.2:8747576-8747595 | None:intergenic | 45.0% | |
| GCCAATGGATGGTTTATCCT+TGG | - | chr8.2:8748957-8748976 | None:intergenic | 45.0% | |
| GCTGAGGAAAAAACTGTTGG+TGG | + | chr8.2:8748911-8748930 | MS.gene26717:CDS | 45.0% | |
| GGACGCATGTTCTTGTTCTT+GGG | - | chr8.2:8747651-8747670 | None:intergenic | 45.0% | |
| GGATAAACCATCCATTGGCA+CGG | + | chr8.2:8748958-8748977 | MS.gene26717:CDS | 45.0% | |
| GGATGTAGATGAGAATGCTC+AGG | + | chr8.2:8748373-8748392 | MS.gene26717:CDS | 45.0% | |
| GGTTAATCAATCGGTCAACG+AGG | - | chr8.2:8748004-8748023 | None:intergenic | 45.0% | |
| TCAATTAATACCTGGGGAGC+AGG | - | chr8.2:8748158-8748177 | None:intergenic | 45.0% | |
| TTCCCGGGTGAAATGGATAA+TGG | - | chr8.2:8749433-8749452 | None:intergenic | 45.0% | |
| TTTGAGAGCCTCAGATGTCA+TGG | + | chr8.2:8749519-8749538 | MS.gene26717:CDS | 45.0% | |
| ! | AGGTAGTTGCTGTTGGTGAA+GGG | + | chr8.2:8748444-8748463 | MS.gene26717:CDS | 45.0% |
| ! | ATGGTGACGAAATGGTGATC+AGG | + | chr8.2:8747618-8747637 | MS.gene26717:CDS | 45.0% |
| ! | CAACAACCAAGCCTTATCGT+CGG | - | chr8.2:8747924-8747943 | None:intergenic | 45.0% |
| ! | GAATTCGGATGGTGACGAAA+TGG | + | chr8.2:8747610-8747629 | MS.gene26717:CDS | 45.0% |
| ! | GTTGGTGAAGGGAAGATAGT+TGG | + | chr8.2:8748455-8748474 | MS.gene26717:CDS | 45.0% |
| ! | TGAGTGATGCCACTAGCTTA+TGG | + | chr8.2:8748507-8748526 | MS.gene26717:intron | 45.0% |
| !! | AGAATTTGGTGATGAGGAGG+AGG | - | chr8.2:8747792-8747811 | None:intergenic | 45.0% |
| !! | AGCAGAATTTGGTGATGAGG+AGG | - | chr8.2:8747795-8747814 | None:intergenic | 45.0% |
| !! | TGTTGGTGGTTTGTTGCTCA+CGG | + | chr8.2:8748925-8748944 | MS.gene26717:CDS | 45.0% |
| !!! | GATCGAGTAGTTTTGGTCCT+AGG | + | chr8.2:8749321-8749340 | MS.gene26717:intron | 45.0% |
| AAAGTATGCAGGGACTGAGG+TGG | + | chr8.2:8748614-8748633 | MS.gene26717:CDS | 50.0% | |
| AAGCTTACCGTGCCAATGGA+TGG | - | chr8.2:8748968-8748987 | None:intergenic | 50.0% | |
| AAGTTTGTGGCCTGACCCAT+GGG | + | chr8.2:8748226-8748245 | MS.gene26717:intron | 50.0% | |
| ACAAGAACATGCGTCCGTAG+TGG | + | chr8.2:8747655-8747674 | MS.gene26717:CDS | 50.0% | |
| AGGTGATAGCTGTTGGTCCA+GGG | + | chr8.2:8749380-8749399 | MS.gene26717:intron | 50.0% | |
| ATGTAGCCGACGATAAGGCT+TGG | + | chr8.2:8747915-8747934 | MS.gene26717:intron | 50.0% | |
| CGGACGCATGTTCTTGTTCT+TGG | - | chr8.2:8747652-8747671 | None:intergenic | 50.0% | |
| CTCAAAGTATGCAGGGACTG+AGG | + | chr8.2:8748611-8748630 | MS.gene26717:CDS | 50.0% | |
| GAGGAAGATGAAGACGCACA+AGG | - | chr8.2:8747773-8747792 | None:intergenic | 50.0% | |
| GAGGATAGCCATGACATCTG+AGG | - | chr8.2:8749530-8749549 | None:intergenic | 50.0% | |
| GATCCATGTAGCCGACGATA+AGG | + | chr8.2:8747910-8747929 | MS.gene26717:intron | 50.0% | |
| GGGACTGAGGTGGAGTTTAA+TGG | + | chr8.2:8748624-8748643 | MS.gene26717:CDS | 50.0% | |
| GGGCAGATCATCAAGACAAC+TGG | - | chr8.2:8748787-8748806 | None:intergenic | 50.0% | |
| GTAGATGAGAATGCTCAGGG+TGG | + | chr8.2:8748377-8748396 | MS.gene26717:CDS | 50.0% | |
| TAAGTTTGTGGCCTGACCCA+TGG | + | chr8.2:8748225-8748244 | MS.gene26717:intron | 50.0% | |
| ! | AAGCCTTATCGTCGGCTACA+TGG | - | chr8.2:8747916-8747935 | None:intergenic | 50.0% |
| ! | ATCTAAGACTCAAGGGGGTG+AGG | + | chr8.2:8748424-8748443 | MS.gene26717:CDS | 50.0% |
| ! | GAGGTAGTTGCTGTTGGTGA+AGG | + | chr8.2:8748443-8748462 | MS.gene26717:CDS | 50.0% |
| AACGAGCCGACACAAGGACA+AGG | + | chr8.2:8747567-8747586 | MS.gene26717:CDS | 55.0% | |
| CAGGTGATAGCTGTTGGTCC+AGG | + | chr8.2:8749379-8749398 | MS.gene26717:intron | 55.0% | |
| GTTGCTCACGGAAGCAACCA+AGG | + | chr8.2:8748937-8748956 | MS.gene26717:CDS | 55.0% | |
| TTGCCAAACGAGCCGACACA+AGG | + | chr8.2:8747561-8747580 | MS.gene26717:CDS | 55.0% | |
| ! | TCGGCTCGTTTGGCAAGTCT+TGG | - | chr8.2:8747557-8747576 | None:intergenic | 55.0% |
| !! | TGTCCTTGTGTCGGCTCGTT+TGG | - | chr8.2:8747567-8747586 | None:intergenic | 55.0% |
| AGCTGTTGGTCCAGGGTCTG+TGG | + | chr8.2:8749387-8749406 | MS.gene26717:CDS | 60.0% | |
| CCAGGGTCTGTGGATGACGA+AGG | + | chr8.2:8749397-8749416 | MS.gene26717:CDS | 60.0% | |
| CCTTCGTCATCCACAGACCC+TGG | - | chr8.2:8749400-8749419 | None:intergenic | 60.0% | |
| GCTGCAGGTTGCAGAAGCTG+AGG | + | chr8.2:8748895-8748914 | MS.gene26717:intron | 60.0% | |
| GGGGGTGAGGTAGTTGCTGT+TGG | + | chr8.2:8748437-8748456 | MS.gene26717:CDS | 60.0% | |
| GTCTAGTGCTCCTGCTCCCC+AGG | + | chr8.2:8748145-8748164 | MS.gene26717:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8747512 | 8749555 | 8747512 | ID=MS.gene26717 |
| chr8.2 | mRNA | 8747512 | 8749555 | 8747512 | ID=MS.gene26717.t1;Parent=MS.gene26717 |
| chr8.2 | exon | 8747512 | 8747676 | 8747512 | ID=MS.gene26717.t1.exon1;Parent=MS.gene26717.t1 |
| chr8.2 | CDS | 8747512 | 8747676 | 8747512 | ID=cds.MS.gene26717.t1;Parent=MS.gene26717.t1 |
| chr8.2 | exon | 8747761 | 8747835 | 8747761 | ID=MS.gene26717.t1.exon2;Parent=MS.gene26717.t1 |
| chr8.2 | CDS | 8747761 | 8747835 | 8747761 | ID=cds.MS.gene26717.t1;Parent=MS.gene26717.t1 |
| chr8.2 | exon | 8748026 | 8748166 | 8748026 | ID=MS.gene26717.t1.exon3;Parent=MS.gene26717.t1 |
| chr8.2 | CDS | 8748026 | 8748166 | 8748026 | ID=cds.MS.gene26717.t1;Parent=MS.gene26717.t1 |
| chr8.2 | exon | 8748326 | 8748505 | 8748326 | ID=MS.gene26717.t1.exon4;Parent=MS.gene26717.t1 |
| chr8.2 | CDS | 8748326 | 8748505 | 8748326 | ID=cds.MS.gene26717.t1;Parent=MS.gene26717.t1 |
| chr8.2 | exon | 8748591 | 8748746 | 8748591 | ID=MS.gene26717.t1.exon5;Parent=MS.gene26717.t1 |
| chr8.2 | CDS | 8748591 | 8748746 | 8748591 | ID=cds.MS.gene26717.t1;Parent=MS.gene26717.t1 |
| chr8.2 | exon | 8748902 | 8748979 | 8748902 | ID=MS.gene26717.t1.exon6;Parent=MS.gene26717.t1 |
| chr8.2 | CDS | 8748902 | 8748979 | 8748902 | ID=cds.MS.gene26717.t1;Parent=MS.gene26717.t1 |
| chr8.2 | exon | 8749382 | 8749555 | 8749382 | ID=MS.gene26717.t1.exon7;Parent=MS.gene26717.t1 |
| chr8.2 | CDS | 8749382 | 8749555 | 8749382 | ID=cds.MS.gene26717.t1;Parent=MS.gene26717.t1 |
| Gene Sequence |
| Protein sequence |
