AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26740.t1 MTR_2g034900 67.865 445 92 5 7 406 91 529 0.0 582
MS.gene26740.t1 MTR_1g083810 70.213 376 107 4 35 408 161 533 0.0 536
MS.gene26740.t1 MTR_8g027585 63.739 444 108 6 15 409 9 448 0.0 523
MS.gene26740.t1 MTR_4g131510 73.988 346 88 2 35 379 83 427 0.0 510
MS.gene26740.t1 MTR_7g112350 68.533 375 113 4 35 407 161 532 4.40e-180 512
MS.gene26740.t1 MTR_4g133040 74.926 339 79 3 50 387 109 442 3.96e-174 496
MS.gene26740.t1 MTR_4g121435 68.156 358 105 5 50 406 179 528 1.18e-169 486
MS.gene26740.t1 MTR_4g132980 61.929 394 97 5 22 382 26 399 1.32e-160 460
MS.gene26740.t1 MTR_4g133030 59.859 426 119 6 5 384 9 428 3.07e-158 456
MS.gene26740.t1 MTR_4g131000 65.013 383 93 5 35 379 82 461 1.28e-153 442
MS.gene26740.t1 MTR_4g132980 70.345 290 67 2 93 382 1 271 1.78e-139 401
MS.gene26740.t1 MTR_4g127570 57.644 399 102 7 12 387 7 361 5.68e-136 397
MS.gene26740.t1 MTR_4g013265 53.071 407 87 9 21 409 4 324 4.36e-123 359
MS.gene26740.t1 MTR_1g053470 58.863 299 119 4 81 376 1 298 1.95e-113 334
MS.gene26740.t1 MTR_1g053470 58.863 299 119 4 81 376 1 298 3.41e-113 334
MS.gene26740.t1 MTR_1g053470 58.863 299 119 4 81 376 1 298 5.10e-112 333
MS.gene26740.t1 MTR_7g112150 48.182 330 165 6 47 373 190 516 6.98e-87 273
MS.gene26740.t1 MTR_4g132960 65.464 194 48 2 192 385 3 177 5.65e-76 235
MS.gene26740.t1 MTR_7g112160 43.675 332 159 9 47 373 190 498 1.75e-63 212
MS.gene26740.t1 MTR_4g132967 57.732 194 46 2 192 385 7 164 1.20e-60 195
MS.gene26740.t1 MTR_7g113400 46.639 238 122 5 47 282 190 424 2.69e-51 178
MS.gene26740.t1 MTR_4g124270 93.220 59 4 0 197 255 64 122 1.64e-28 110
MS.gene26740.t1 MTR_4g124270 33.143 175 87 7 32 203 7 154 1.19e-13 68.9
MS.gene26740.t1 MTR_1g066760 27.401 354 211 10 51 378 186 519 2.78e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26740.t1 AT3G06720 68.533 375 115 3 35 407 159 532 0.0 518
MS.gene26740.t1 AT3G06720 68.533 375 115 3 35 407 159 532 0.0 518
MS.gene26740.t1 AT4G16143 70.588 374 105 4 35 406 164 534 7.64e-179 509
MS.gene26740.t1 AT4G16143 70.588 374 105 4 35 406 164 534 7.64e-179 509
MS.gene26740.t1 AT4G02150 62.834 374 132 5 35 406 162 530 4.75e-161 464
MS.gene26740.t1 AT1G02690 61.436 376 140 3 35 406 163 537 1.25e-156 453
MS.gene26740.t1 AT1G09270 62.933 375 135 4 35 407 84 456 4.90e-156 448
MS.gene26740.t1 AT1G09270 62.933 375 135 4 35 407 166 538 1.84e-155 450
MS.gene26740.t1 AT1G09270 62.933 375 135 4 35 407 166 538 1.84e-155 450
MS.gene26740.t1 AT1G02690 61.273 377 140 4 35 406 163 538 9.75e-155 448
MS.gene26740.t1 AT5G49310 54.737 380 147 5 36 408 158 519 2.61e-125 372
MS.gene26740.t1 AT3G05720 55.422 332 140 2 47 371 160 490 1.23e-116 350
MS.gene26740.t1 AT3G05720 55.422 332 140 2 47 371 160 490 1.23e-116 350
MS.gene26740.t1 AT4G02150 64.000 250 86 3 35 282 162 409 5.02e-107 322
MS.gene26740.t1 AT5G52000 53.374 326 144 3 47 371 103 421 6.55e-104 315
MS.gene26740.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.54e-69 224
MS.gene26740.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.54e-69 224
MS.gene26740.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.54e-69 224
MS.gene26740.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.54e-69 224
MS.gene26740.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.54e-69 224
MS.gene26740.t1 AT1G32880 45.366 205 88 4 181 383 1 183 6.55e-51 169
MS.gene26740.t1 AT5G03070 25.496 353 219 9 51 378 186 519 4.51e-23 101

Find 95 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGTACCTGCTCAAATA+AGG 0.228963 8.3:+4937524 None:intergenic
CTTGATTCGGATTCGAATAA+TGG 0.269740 8.3:-4938211 MS.gene26740:intron
TTAAAATTCTCAAGACATAT+TGG 0.304501 8.3:-4935884 MS.gene26740:CDS
TGCTGTGATCATGGGTCAAC+AGG 0.304780 8.3:+4936545 None:intergenic
TCTCAACCTGGTTTCAACTA+TGG 0.310751 8.3:-4935816 MS.gene26740:CDS
CGCTGGAGAGCTGGAAGCGC+TGG 0.336154 8.3:+4937421 None:intergenic
TCAGCGACAAATCTTGAATC+AGG 0.360435 8.3:+4936074 None:intergenic
TACAAGGTACTTGGCGAGCC+AGG 0.363447 8.3:-4936132 MS.gene26740:intron
ATATTAAGCAAGAAGCTTGC+AGG 0.367578 8.3:-4936519 MS.gene26740:CDS
AGCTGGTCTGATTGCTCCTC+TGG 0.375278 8.3:-4936344 MS.gene26740:CDS
TGCGAGGACTTCTGCATCAT+TGG 0.378438 8.3:+4937387 None:intergenic
TGCCCAGGCAAAAGCTCGAC+AGG 0.388941 8.3:+4937556 None:intergenic
TGTCAGGTTGTTATCAATCA+TGG 0.398433 8.3:-4936589 MS.gene26740:intron
CTATGGAGGCAGTGACATTC+AGG 0.400531 8.3:-4935799 MS.gene26740:CDS
GATAGATATTAACGAGGTAT+TGG 0.400787 8.3:-4935961 MS.gene26740:CDS
TTCTGAAAATCAACCATTGT+AGG 0.417482 8.3:+4938235 None:intergenic
AGTGGGATAACAGCGGGATC+AGG 0.418748 8.3:+4937628 None:intergenic
TGTTGTTATTACAAGGTACT+TGG 0.432672 8.3:-4936141 MS.gene26740:intron
AAGTCCTCGCAGATGCATGC+TGG 0.438259 8.3:-4937375 MS.gene26740:CDS
CCAGGCAATGGTTCTCAACC+TGG 0.441909 8.3:-4935828 MS.gene26740:CDS
CATGGGTCAACAGGCTCAAA+AGG 0.443327 8.3:+4936554 None:intergenic
ACGGTGGGAAATATTGTAAC+TGG 0.450687 8.3:-4937135 MS.gene26740:CDS
TTTCTCCTCAATCGAAGGAC+TGG 0.456540 8.3:+4938104 None:intergenic
ATTGTAGGCTGTGTTGGCAT+TGG 0.456868 8.3:-4937706 MS.gene26740:intron
ACAAGTACCTGCTCAAATAA+GGG 0.456969 8.3:+4937525 None:intergenic
AAAAGCAAACGCTGGAGAGC+TGG 0.461703 8.3:+4937412 None:intergenic
CTGCTGAAATTGAATCTGTC+TGG 0.469641 8.3:+4935771 None:intergenic
ATCCAAGTGGTGATCGAGGC+AGG 0.471609 8.3:-4937316 MS.gene26740:CDS
TTGTAGGCTGTGTTGGCATT+GGG 0.472949 8.3:-4937705 MS.gene26740:intron
TTTCCCACCGTGCGAAGTGC+AGG 0.475696 8.3:+4937147 None:intergenic
CCAGGTTGAGAACCATTGCC+TGG 0.484326 8.3:+4935828 None:intergenic
GCTCTCTCTAATGCTGCATC+TGG 0.485113 8.3:-4936271 MS.gene26740:CDS
CGTGATCTCGTTCTCAGTCA+TGG 0.491377 8.3:-4937654 MS.gene26740:CDS
CACGTACTTGATTTGTGCGT+GGG 0.494462 8.3:+4936243 None:intergenic
TTTGTCGCTGACTGTTTAGA+AGG 0.494955 8.3:-4936062 MS.gene26740:CDS
GGAAGCAGCACAGAAGGAGA+TGG 0.495663 8.3:+4937168 None:intergenic
AGAACGAGATCACGGCAACT+AGG 0.498208 8.3:+4937663 None:intergenic
GCCACTACCCTTATTTGAGC+AGG 0.507615 8.3:-4937532 MS.gene26740:intron
CACCTGCCTCGATCACCACT+TGG 0.511677 8.3:+4937314 None:intergenic
AGTGCAGGAAGCAGCACAGA+AGG 0.515695 8.3:+4937162 None:intergenic
ATGCAGGCTGTTATTGAAGC+TGG 0.519811 8.3:-4936361 MS.gene26740:intron
CTGAAATTGAATCTGTCTGG+TGG 0.522890 8.3:+4935774 None:intergenic
CTTCCTGCACTTCGCACGGT+GGG 0.528053 8.3:-4937150 MS.gene26740:CDS
TCAACAGGCTCAAAAGGCAT+TGG 0.531824 8.3:+4936560 None:intergenic
CATTCAAGTGGGATAACAGC+GGG 0.538303 8.3:+4937622 None:intergenic
AATTGTATTGTAGGCTGTGT+TGG 0.538992 8.3:-4937712 MS.gene26740:intron
ACAAGTTTCTCCTCAATCGA+AGG 0.539421 8.3:+4938099 None:intergenic
CTCTCTAATGCTGCATCTGG+TGG 0.540235 8.3:-4936268 MS.gene26740:CDS
TTCTCCTCAATCGAAGGACT+GGG 0.541243 8.3:+4938105 None:intergenic
ACAAGGTACTTGGCGAGCCA+GGG 0.543294 8.3:-4936131 MS.gene26740:intron
GAACGAGATCACGGCAACTA+GGG 0.543826 8.3:+4937664 None:intergenic
TGAAATTGAATCTGTCTGGT+GGG 0.543835 8.3:+4935775 None:intergenic
GTGGGATAACAGCGGGATCA+GGG 0.545912 8.3:+4937629 None:intergenic
TGGTAACGGAGAGCAGATAC+AGG 0.546457 8.3:-4936476 MS.gene26740:intron
AGTCCTCGCAGATGCATGCT+GGG 0.547868 8.3:-4937374 MS.gene26740:CDS
GCTGCTTCCTGCACTTCGCA+CGG 0.549494 8.3:-4937154 MS.gene26740:CDS
ACCTGCTCAAATAAGGGTAG+TGG 0.550877 8.3:+4937531 None:intergenic
TGGAAAAGATTGAAAACTTG+CGG 0.564036 8.3:-4935941 MS.gene26740:CDS
GAAATTGAATCTGTCTGGTG+GGG 0.564329 8.3:+4935776 None:intergenic
TCACGTACTTGATTTGTGCG+TGG 0.568960 8.3:+4936242 None:intergenic
AGGACCCAGTCCTTCGATTG+AGG 0.571546 8.3:-4938109 MS.gene26740:CDS
ACTGTATCAAACATTACAGC+TGG 0.574902 8.3:-4936496 MS.gene26740:CDS
GAAGCAGCACAGAAGGAGAT+GGG 0.575204 8.3:+4937169 None:intergenic
GTGATCGAGGCAGGTGTATG+TGG 0.578562 8.3:-4937307 MS.gene26740:CDS
CTGCCTCCATAGTTGAAACC+AGG 0.585202 8.3:+4935810 None:intergenic
TATCTGTGTGCTCATTCAAG+TGG 0.588493 8.3:+4937610 None:intergenic
ATAAGGGTAGTGGCTTGCCC+AGG 0.590201 8.3:+4937541 None:intergenic
CAACAGTGAAATTTATGAGA+AGG 0.597194 8.3:-4935910 MS.gene26740:CDS
CAACCTGGTTTCAACTATGG+AGG 0.597434 8.3:-4935813 MS.gene26740:CDS
TGTTAGAGCTCTTCCTACAA+TGG 0.599686 8.3:-4938248 MS.gene26740:CDS
TGGAGATGATATGCAGACTC+AGG 0.600798 8.3:-4937115 MS.gene26740:intron
ATCTGTGTGCTCATTCAAGT+GGG 0.606077 8.3:+4937611 None:intergenic
TCAAACATTACAGCTGGTAA+CGG 0.606786 8.3:-4936490 MS.gene26740:CDS
TTCAAACAAACCTGGTCCCG+AGG 0.609520 8.3:+4938030 None:intergenic
GCTTCCTGCACTTCGCACGG+TGG 0.610152 8.3:-4937151 MS.gene26740:CDS
CAGCGACAAATCTTGAATCA+GGG 0.610267 8.3:+4936075 None:intergenic
CATGACTGAGAACGAGATCA+CGG 0.611773 8.3:+4937655 None:intergenic
ACAGAGGCTTAATGCAACCC+TGG 0.616878 8.3:+4936114 None:intergenic
CAAAATCCAAGTGGTGATCG+AGG 0.619994 8.3:-4937320 MS.gene26740:CDS
AACGAGATCACGGCAACTAG+GGG 0.622955 8.3:+4937665 None:intergenic
GAAGATGAGACACTACCTCC+AGG 0.623625 8.3:-4935846 MS.gene26740:CDS
GAGACACTACCTCCAGGCAA+TGG 0.636873 8.3:-4935840 MS.gene26740:CDS
CATTGGATAAAAGCAAACGC+TGG 0.641534 8.3:+4937404 None:intergenic
CACAATTGACAAAATCCAAG+TGG 0.644084 8.3:-4937329 MS.gene26740:CDS
GCCCAGGCAAAAGCTCGACA+GGG 0.645220 8.3:+4937557 None:intergenic
AAAGCTCGACAGGGCCCACG+TGG 0.657259 8.3:+4937566 None:intergenic
ACTAGACATCGAAGAAAACG+AGG 0.698046 8.3:+4938066 None:intergenic
ACGGCAACTAGGGGAATCAG+CGG 0.700671 8.3:+4937674 None:intergenic
GTGCCCAGCATGCATCTGCG+AGG 0.706898 8.3:+4937371 None:intergenic
TCATTCAAGTGGGATAACAG+CGG 0.731290 8.3:+4937621 None:intergenic
GGTTGAGAACCATTGCCTGG+AGG 0.737525 8.3:+4935831 None:intergenic
TATGCTGAGAAATGCCACGT+GGG 0.758077 8.3:-4937580 MS.gene26740:CDS
GTATGCTGAGAAATGCCACG+TGG 0.787026 8.3:-4937581 MS.gene26740:CDS
CAAACAAGTAAATCACACAG+AGG 0.794778 8.3:+4936098 None:intergenic
TCAGATGATAGATATTAACG+AGG 0.808061 8.3:-4935967 MS.gene26740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAATAAATAAATATACC+TGG + chr8.3:4936217-4936236 None:intergenic 15.0%
!! TAGTATTAATACACATATAA+AGG + chr8.3:4936558-4936577 None:intergenic 15.0%
!! AAATTCAATTTAACTGCTAT+TGG - chr8.3:4936949-4936968 MS.gene26740:intron 20.0%
!! AATAGCAGTTAAATTGAATT+TGG + chr8.3:4936950-4936969 None:intergenic 20.0%
!! AATTCAATTTAACTGCTATT+GGG - chr8.3:4936950-4936969 MS.gene26740:intron 20.0%
!! CATTTGAGTATAAAAAAGAT+GGG + chr8.3:4937583-4937602 None:intergenic 20.0%
!! CTTGTAATAACAACAATATT+TGG + chr8.3:4937874-4937893 None:intergenic 20.0%
!! TATAACCTGAAATTATTCAT+AGG - chr8.3:4937037-4937056 MS.gene26740:intron 20.0%
!! TCATTTGAGTATAAAAAAGA+TGG + chr8.3:4937584-4937603 None:intergenic 20.0%
!! TTAAAATTCTCAAGACATAT+TGG - chr8.3:4938136-4938155 MS.gene26740:intron 20.0%
!!! AAAAAACAAAATTGATTCCT+AGG + chr8.3:4937229-4937248 None:intergenic 20.0%
!!! AATACGTAAATTTTCAATGT+TGG + chr8.3:4937845-4937864 None:intergenic 20.0%
!!! AATCAATTTTGTTTTTTGAG+GGG - chr8.3:4937232-4937251 MS.gene26740:intron 20.0%
!!! CAAATATTGTTGTTATTACA+AGG - chr8.3:4937872-4937891 MS.gene26740:intron 20.0%
!!! GAATCAATTTTGTTTTTTGA+GGG - chr8.3:4937231-4937250 MS.gene26740:intron 20.0%
!!! GTATTAATACTAGATTTTTG+TGG - chr8.3:4936566-4936585 MS.gene26740:CDS 20.0%
!!! TGAAATTTTGTTGTTTTGAT+TGG - chr8.3:4936036-4936055 MS.gene26740:CDS 20.0%
!!! TTTGCTATTCTTGATTATTT+TGG - chr8.3:4936798-4936817 MS.gene26740:intron 20.0%
! AAAAAACAAAATTGATCCCT+AGG + chr8.3:4937124-4937143 None:intergenic 25.0%
! ATGACATGATACTTATACAA+GGG + chr8.3:4937365-4937384 None:intergenic 25.0%
! TATCAAAACTTTAACACTTC+CGG + chr8.3:4935881-4935900 None:intergenic 25.0%
! TCAAATGACATCAAATATCA+TGG - chr8.3:4937596-4937615 MS.gene26740:CDS 25.0%
! TCAAGAATAGCAAAAGAATA+TGG + chr8.3:4936792-4936811 None:intergenic 25.0%
!! ATCTTTAGAAATATTAGCCT+AGG - chr8.3:4937104-4937123 MS.gene26740:intron 25.0%
!! TCTTTAGAAATATTAGCCTA+GGG - chr8.3:4937105-4937124 MS.gene26740:intron 25.0%
!!! AAACTCTGAAATTGTATTGT+AGG - chr8.3:4936299-4936318 MS.gene26740:CDS 25.0%
!!! AATATTTTTGCTGTGATCAT+GGG + chr8.3:4937486-4937505 None:intergenic 25.0%
!!! AGTTTTGATATTTGTTGTGT+AGG - chr8.3:4935891-4935910 MS.gene26740:CDS 25.0%
!!! ATCAATTTTGTTTTTTGAGG+GGG - chr8.3:4937128-4937147 MS.gene26740:CDS 25.0%
!!! GATCAATTTTGTTTTTTGAG+GGG - chr8.3:4937127-4937146 MS.gene26740:CDS 25.0%
!!! GGAATCAATTTTGTTTTTTG+AGG - chr8.3:4937230-4937249 MS.gene26740:intron 25.0%
!!! GGATCAATTTTGTTTTTTGA+GGG - chr8.3:4937126-4937145 MS.gene26740:CDS 25.0%
!!! TAATATTTTTGCTGTGATCA+TGG + chr8.3:4937487-4937506 None:intergenic 25.0%
ACTCACCTATGAATAATTTC+AGG + chr8.3:4937045-4937064 None:intergenic 30.0%
CAACAGTGAAATTTATGAGA+AGG - chr8.3:4938110-4938129 MS.gene26740:CDS 30.0%
CTGCATCGTACATAAATAAA+AGG + chr8.3:4937645-4937664 None:intergenic 30.0%
GATAGATATTAACGAGGTAT+TGG - chr8.3:4938059-4938078 MS.gene26740:CDS 30.0%
GATGACATGATACTTATACA+AGG + chr8.3:4937366-4937385 None:intergenic 30.0%
TCAGATGATAGATATTAACG+AGG - chr8.3:4938053-4938072 MS.gene26740:CDS 30.0%
TGACATGATACTTATACAAG+GGG + chr8.3:4937364-4937383 None:intergenic 30.0%
TGGAAAAGATTGAAAACTTG+CGG - chr8.3:4938079-4938098 MS.gene26740:CDS 30.0%
TGTTATGTAGTAGCAGTAAA+AGG - chr8.3:4936242-4936261 MS.gene26740:intron 30.0%
TTTGACATTCAAAAAGAAGC+TGG - chr8.3:4937722-4937741 MS.gene26740:intron 30.0%
! AATACTAGATTTTTGTGGAC+AGG - chr8.3:4936571-4936590 MS.gene26740:CDS 30.0%
! AATGCATTACTTGTTTCTTC+CGG - chr8.3:4935859-4935878 MS.gene26740:CDS 30.0%
! AGAGAAAAACTTTGGTAACA+CGG - chr8.3:4938011-4938030 MS.gene26740:intron 30.0%
! ATTGTATCTGCATCTTTTGA+AGG - chr8.3:4936826-4936845 MS.gene26740:intron 30.0%
! GGTTTGGGAATTTTATCTTA+GGG - chr8.3:4937254-4937273 MS.gene26740:intron 30.0%
! TGATTTTCAGAAGCTTGATT+CGG - chr8.3:4935796-4935815 MS.gene26740:CDS 30.0%
! TGTTGTTATTACAAGGTACT+TGG - chr8.3:4937879-4937898 MS.gene26740:intron 30.0%
! TTCTGAAAATCAACCATTGT+AGG + chr8.3:4935788-4935807 None:intergenic 30.0%
! TTTTCTTCGATGTCTAGTTA+AGG - chr8.3:4935959-4935978 MS.gene26740:CDS 30.0%
!! ACTAAGTTGGTAATTGATCA+TGG - chr8.3:4936137-4936156 MS.gene26740:intron 30.0%
!! CTAAGTTGGTAATTGATCAT+GGG - chr8.3:4936138-4936157 MS.gene26740:intron 30.0%
!! CTTTTATTTATGTACGATGC+AGG - chr8.3:4937643-4937662 MS.gene26740:CDS 30.0%
!! TAAGTTGGTAATTGATCATG+GGG - chr8.3:4936139-4936158 MS.gene26740:intron 30.0%
!!! AAAAGAATATGGTTTTGAGC+AGG + chr8.3:4936781-4936800 None:intergenic 30.0%
!!! AAAGAATATGGTTTTGAGCA+GGG + chr8.3:4936780-4936799 None:intergenic 30.0%
!!! GAGTTTTTCAAGTAAGTATG+CGG - chr8.3:4937061-4937080 MS.gene26740:intron 30.0%
!!! GGGATCAATTTTGTTTTTTG+AGG - chr8.3:4937125-4937144 MS.gene26740:CDS 30.0%
AACAAGTACCTGCTCAAATA+AGG + chr8.3:4936499-4936518 None:intergenic 35.0%
AATTGTATTGTAGGCTGTGT+TGG - chr8.3:4936308-4936327 MS.gene26740:CDS 35.0%
ACAAGTACCTGCTCAAATAA+GGG + chr8.3:4936498-4936517 None:intergenic 35.0%
ACATTCAAAAAGAAGCTGGA+TGG - chr8.3:4937726-4937745 MS.gene26740:intron 35.0%
ACTGTATCAAACATTACAGC+TGG - chr8.3:4937524-4937543 MS.gene26740:intron 35.0%
AGACAAGTTTCAAACAAACC+TGG + chr8.3:4936001-4936020 None:intergenic 35.0%
ATATTAAGCAAGAAGCTTGC+AGG - chr8.3:4937501-4937520 MS.gene26740:intron 35.0%
CAAACAAGTAAATCACACAG+AGG + chr8.3:4937925-4937944 None:intergenic 35.0%
CACAATTGACAAAATCCAAG+TGG - chr8.3:4936691-4936710 MS.gene26740:intron 35.0%
CATCATTAGGTGAACTAAGT+AGG + chr8.3:4936184-4936203 None:intergenic 35.0%
CATTCAAAAAGAAGCTGGAT+GGG - chr8.3:4937727-4937746 MS.gene26740:intron 35.0%
GAAGAATAGGTACTTACAGA+AGG + chr8.3:4936754-4936773 None:intergenic 35.0%
TCAAACATTACAGCTGGTAA+CGG - chr8.3:4937530-4937549 MS.gene26740:intron 35.0%
TCCAAAATAACTAACACAGC+AGG + chr8.3:4936990-4937009 None:intergenic 35.0%
TGAAATTGAATCTGTCTGGT+GGG + chr8.3:4938248-4938267 None:intergenic 35.0%
TGCGGTTGTTGAAAATTGAT+TGG - chr8.3:4937079-4937098 MS.gene26740:intron 35.0%
! AACTTCTGAGAACACTAAGT+TGG - chr8.3:4936124-4936143 MS.gene26740:CDS 35.0%
! AGGTCTTGAGAATTTTCTGA+AGG - chr8.3:4937978-4937997 MS.gene26740:intron 35.0%
! GAGAAAAACTTTGGTAACAC+GGG - chr8.3:4938012-4938031 MS.gene26740:intron 35.0%
! GGGTTTGGGAATTTTATCTT+AGG - chr8.3:4937253-4937272 MS.gene26740:intron 35.0%
! TAGTTAAGGACGATTTTCCT+CGG - chr8.3:4935973-4935992 MS.gene26740:CDS 35.0%
! TCCTGCTGTGTTAGTTATTT+TGG - chr8.3:4936986-4937005 MS.gene26740:intron 35.0%
! TGTCAGGTTGTTATCAATCA+TGG - chr8.3:4937431-4937450 MS.gene26740:intron 35.0%
!! ACATATAAAGGTGTTCTTGC+AGG + chr8.3:4936546-4936565 None:intergenic 35.0%
!! CTTGAGAATTTTCTGAAGGT+TGG - chr8.3:4937982-4938001 MS.gene26740:intron 35.0%
!! CTTGATTCGGATTCGAATAA+TGG - chr8.3:4935809-4935828 MS.gene26740:CDS 35.0%
!! TTTTGAAGAAGATTGACCAG+AGG + chr8.3:4937695-4937714 None:intergenic 35.0%
!!! TTTGTTTTTTGAGGGGGTTT+GGG - chr8.3:4937239-4937258 MS.gene26740:intron 35.0%
!!! TTTTGTTTTTTGAGGGGGTT+TGG - chr8.3:4937238-4937257 MS.gene26740:intron 35.0%
ACAAGTTTCTCCTCAATCGA+AGG + chr8.3:4935924-4935943 None:intergenic 40.0%
ACGGTGGGAAATATTGTAAC+TGG - chr8.3:4936885-4936904 MS.gene26740:intron 40.0%
ACTAGACATCGAAGAAAACG+AGG + chr8.3:4935957-4935976 None:intergenic 40.0%
ATCTGTGTGCTCATTCAAGT+GGG + chr8.3:4936412-4936431 None:intergenic 40.0%
CAATCTAGTCTCTTAAGCCT+AGG - chr8.3:4937209-4937228 MS.gene26740:intron 40.0%
CAGCGACAAATCTTGAATCA+GGG + chr8.3:4937948-4937967 None:intergenic 40.0%
CATTGGATAAAAGCAAACGC+TGG + chr8.3:4936619-4936638 None:intergenic 40.0%
CCAAATCAGGTAATTCTCAC+AGG + chr8.3:4937399-4937418 None:intergenic 40.0%
CCTGTGAGAATTACCTGATT+TGG - chr8.3:4937396-4937415 MS.gene26740:CDS 40.0%
CTGAAATTGAATCTGTCTGG+TGG + chr8.3:4938249-4938268 None:intergenic 40.0%
CTGCTGAAATTGAATCTGTC+TGG + chr8.3:4938252-4938271 None:intergenic 40.0%
GAAATTGAATCTGTCTGGTG+GGG + chr8.3:4938247-4938266 None:intergenic 40.0%
GGAGAAGCAGAGAAAAACTT+TGG - chr8.3:4938003-4938022 MS.gene26740:intron 40.0%
GGCTTAAGAGACTAGATTGA+TGG + chr8.3:4937208-4937227 None:intergenic 40.0%
GTGAGAAGAGACTAGATTGA+GGG + chr8.3:4937342-4937361 None:intergenic 40.0%
TAATGATGCTGTTCGAAACC+AGG - chr8.3:4936196-4936215 MS.gene26740:intron 40.0%
TATCTGTGTGCTCATTCAAG+TGG + chr8.3:4936413-4936432 None:intergenic 40.0%
TCAGCGACAAATCTTGAATC+AGG + chr8.3:4937949-4937968 None:intergenic 40.0%
TCATTCAAGTGGGATAACAG+CGG + chr8.3:4936402-4936421 None:intergenic 40.0%
TCTCAACCTGGTTTCAACTA+TGG - chr8.3:4938204-4938223 MS.gene26740:intron 40.0%
TGGTTTCGAACAGCATCATT+AGG + chr8.3:4936197-4936216 None:intergenic 40.0%
TGTTAGAGCTCTTCCTACAA+TGG - chr8.3:4935772-4935791 MS.gene26740:CDS 40.0%
TTGAGCAGGGATAGAAGAAT+AGG + chr8.3:4936767-4936786 None:intergenic 40.0%
! AGTTAAGGACGATTTTCCTC+GGG - chr8.3:4935974-4935993 MS.gene26740:CDS 40.0%
! CTAAGTAGGTTGACAAGCAT+TGG + chr8.3:4936170-4936189 None:intergenic 40.0%
! TAGATTTTTGTGGACAGGTG+AGG - chr8.3:4936576-4936595 MS.gene26740:CDS 40.0%
! TTTGTCGCTGACTGTTTAGA+AGG - chr8.3:4937958-4937977 MS.gene26740:intron 40.0%
!! AAAAAGAGCACCACCAAATC+AGG + chr8.3:4937412-4937431 None:intergenic 40.0%
!! GTGAGAATTACCTGATTTGG+TGG - chr8.3:4937399-4937418 MS.gene26740:CDS 40.0%
ACCTGCTCAAATAAGGGTAG+TGG + chr8.3:4936492-4936511 None:intergenic 45.0%
ATGCAGGCTGTTATTGAAGC+TGG - chr8.3:4937659-4937678 MS.gene26740:CDS 45.0%
CAAAATCCAAGTGGTGATCG+AGG - chr8.3:4936700-4936719 MS.gene26740:intron 45.0%
CAACCTGGTTTCAACTATGG+AGG - chr8.3:4938207-4938226 MS.gene26740:intron 45.0%
CATGACTGAGAACGAGATCA+CGG + chr8.3:4936368-4936387 None:intergenic 45.0%
CATTCAAGTGGGATAACAGC+GGG + chr8.3:4936401-4936420 None:intergenic 45.0%
GCACTCACAAACATAACAGC+TGG - chr8.3:4936101-4936120 MS.gene26740:CDS 45.0%
GGTGAGAAGAGACTAGATTG+AGG + chr8.3:4937343-4937362 None:intergenic 45.0%
TAGCAGTGAATCACCAGCAA+TGG + chr8.3:4937178-4937197 None:intergenic 45.0%
TATGCTGAGAAATGCCACGT+GGG - chr8.3:4936440-4936459 MS.gene26740:intron 45.0%
TGGAGATGATATGCAGACTC+AGG - chr8.3:4936905-4936924 MS.gene26740:intron 45.0%
TTCTCCTCAATCGAAGGACT+GGG + chr8.3:4935918-4935937 None:intergenic 45.0%
TTTCTCCTCAATCGAAGGAC+TGG + chr8.3:4935919-4935938 None:intergenic 45.0%
! ATTGTAGGCTGTGTTGGCAT+TGG - chr8.3:4936314-4936333 MS.gene26740:CDS 45.0%
! TCAACAGGCTCAAAAGGCAT+TGG + chr8.3:4937463-4937482 None:intergenic 45.0%
! TCATACTTGCTAGCCATTGC+TGG - chr8.3:4937288-4937307 MS.gene26740:CDS 45.0%
! TTGTAGGCTGTGTTGGCATT+GGG - chr8.3:4936315-4936334 MS.gene26740:CDS 45.0%
!! CACGTACTTGATTTGTGCGT+GGG + chr8.3:4937780-4937799 None:intergenic 45.0%
!! TCACGTACTTGATTTGTGCG+TGG + chr8.3:4937781-4937800 None:intergenic 45.0%
!!! TTGGTGGTGCTCTTTTTGTC+AGG - chr8.3:4937415-4937434 MS.gene26740:CDS 45.0%
AAAAGCAAACGCTGGAGAGC+TGG + chr8.3:4936611-4936630 None:intergenic 50.0%
AACGAGATCACGGCAACTAG+GGG + chr8.3:4936358-4936377 None:intergenic 50.0%
AATGTTGGCAGCACGAAGCA+GGG + chr8.3:4937830-4937849 None:intergenic 50.0%
ACAGAGGCTTAATGCAACCC+TGG + chr8.3:4937909-4937928 None:intergenic 50.0%
AGAACGAGATCACGGCAACT+AGG + chr8.3:4936360-4936379 None:intergenic 50.0%
CATGGGTCAACAGGCTCAAA+AGG + chr8.3:4937469-4937488 None:intergenic 50.0%
CGTGATCTCGTTCTCAGTCA+TGG - chr8.3:4936366-4936385 MS.gene26740:intron 50.0%
CTATGGAGGCAGTGACATTC+AGG - chr8.3:4938221-4938240 MS.gene26740:CDS 50.0%
CTCTCTAATGCTGCATCTGG+TGG - chr8.3:4937752-4937771 MS.gene26740:intron 50.0%
CTGCCTCCATAGTTGAAACC+AGG + chr8.3:4938213-4938232 None:intergenic 50.0%
GAACGAGATCACGGCAACTA+GGG + chr8.3:4936359-4936378 None:intergenic 50.0%
GAAGATGAGACACTACCTCC+AGG - chr8.3:4938174-4938193 MS.gene26740:intron 50.0%
GAAGCAGCACAGAAGGAGAT+GGG + chr8.3:4936854-4936873 None:intergenic 50.0%
GCTCTCTCTAATGCTGCATC+TGG - chr8.3:4937749-4937768 MS.gene26740:intron 50.0%
GTATGCTGAGAAATGCCACG+TGG - chr8.3:4936439-4936458 MS.gene26740:intron 50.0%
TGCGAGGACTTCTGCATCAT+TGG + chr8.3:4936636-4936655 None:intergenic 50.0%
TGCTGTGATCATGGGTCAAC+AGG + chr8.3:4937478-4937497 None:intergenic 50.0%
TTCAAACAAACCTGGTCCCG+AGG + chr8.3:4935993-4936012 None:intergenic 50.0%
! GCCACTACCCTTATTTGAGC+AGG - chr8.3:4936488-4936507 MS.gene26740:CDS 50.0%
! TCATGCTTGCTAGCCATTGC+TGG - chr8.3:4937162-4937181 MS.gene26740:CDS 50.0%
!! TGGTAACGGAGAGCAGATAC+AGG - chr8.3:4937544-4937563 MS.gene26740:CDS 50.0%
AAGTCCTCGCAGATGCATGC+TGG - chr8.3:4936645-4936664 MS.gene26740:intron 55.0%
ACGGCAACTAGGGGAATCAG+CGG + chr8.3:4936349-4936368 None:intergenic 55.0%
AGGACCCAGTCCTTCGATTG+AGG - chr8.3:4935911-4935930 MS.gene26740:CDS 55.0%
AGTCCTCGCAGATGCATGCT+GGG - chr8.3:4936646-4936665 MS.gene26740:intron 55.0%
AGTGCAGGAAGCAGCACAGA+AGG + chr8.3:4936861-4936880 None:intergenic 55.0%
AGTGGGATAACAGCGGGATC+AGG + chr8.3:4936395-4936414 None:intergenic 55.0%
ATCCAAGTGGTGATCGAGGC+AGG - chr8.3:4936704-4936723 MS.gene26740:intron 55.0%
CAATGTTGGCAGCACGAAGC+AGG + chr8.3:4937831-4937850 None:intergenic 55.0%
CCAGGCAATGGTTCTCAACC+TGG - chr8.3:4938192-4938211 MS.gene26740:intron 55.0%
GAGACACTACCTCCAGGCAA+TGG - chr8.3:4938180-4938199 MS.gene26740:intron 55.0%
GGAAGCAGCACAGAAGGAGA+TGG + chr8.3:4936855-4936874 None:intergenic 55.0%
GGTTGAGAACCATTGCCTGG+AGG + chr8.3:4938192-4938211 None:intergenic 55.0%
GTGATCGAGGCAGGTGTATG+TGG - chr8.3:4936713-4936732 MS.gene26740:intron 55.0%
GTGGGATAACAGCGGGATCA+GGG + chr8.3:4936394-4936413 None:intergenic 55.0%
! ACAAGGTACTTGGCGAGCCA+GGG - chr8.3:4937889-4937908 MS.gene26740:intron 55.0%
! AGCTGGTCTGATTGCTCCTC+TGG - chr8.3:4937676-4937695 MS.gene26740:CDS 55.0%
! ATAAGGGTAGTGGCTTGCCC+AGG + chr8.3:4936482-4936501 None:intergenic 55.0%
! CCAGGTTGAGAACCATTGCC+TGG + chr8.3:4938195-4938214 None:intergenic 55.0%
! TACAAGGTACTTGGCGAGCC+AGG - chr8.3:4937888-4937907 MS.gene26740:intron 55.0%
CACCTGCCTCGATCACCACT+TGG + chr8.3:4936709-4936728 None:intergenic 60.0%
CTTCCTGCACTTCGCACGGT+GGG - chr8.3:4936870-4936889 MS.gene26740:intron 60.0%
GCCCAGGCAAAAGCTCGACA+GGG + chr8.3:4936466-4936485 None:intergenic 60.0%
GCTGCTTCCTGCACTTCGCA+CGG - chr8.3:4936866-4936885 MS.gene26740:intron 60.0%
TGCCCAGGCAAAAGCTCGAC+AGG + chr8.3:4936467-4936486 None:intergenic 60.0%
TTTCCCACCGTGCGAAGTGC+AGG + chr8.3:4936876-4936895 None:intergenic 60.0%
! GCCCTGTCGAGCTTTTGCCT+GGG - chr8.3:4936462-4936481 MS.gene26740:intron 60.0%
! GGACGATTTTCCTCGGGACC+AGG - chr8.3:4935980-4935999 MS.gene26740:CDS 60.0%
AAAGCTCGACAGGGCCCACG+TGG + chr8.3:4936457-4936476 None:intergenic 65.0%
GCTTCCTGCACTTCGCACGG+TGG - chr8.3:4936869-4936888 MS.gene26740:intron 65.0%
GTGCCCAGCATGCATCTGCG+AGG + chr8.3:4936652-4936671 None:intergenic 65.0%
! GGCCCTGTCGAGCTTTTGCC+TGG - chr8.3:4936461-4936480 MS.gene26740:intron 65.0%
! CGCTGGAGAGCTGGAAGCGC+TGG + chr8.3:4936602-4936621 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 4935764 4938278 4935764 ID=MS.gene26740
chr8.3 mRNA 4935764 4938278 4935764 ID=MS.gene26740.t1;Parent=MS.gene26740
chr8.3 exon 4938212 4938278 4938212 ID=MS.gene26740.t1.exon1;Parent=MS.gene26740.t1
chr8.3 CDS 4938212 4938278 4938212 ID=cds.MS.gene26740.t1;Parent=MS.gene26740.t1
chr8.3 exon 4938041 4938129 4938041 ID=MS.gene26740.t1.exon2;Parent=MS.gene26740.t1
chr8.3 CDS 4938041 4938129 4938041 ID=cds.MS.gene26740.t1;Parent=MS.gene26740.t1
chr8.3 exon 4937533 4937721 4937533 ID=MS.gene26740.t1.exon3;Parent=MS.gene26740.t1
chr8.3 CDS 4937533 4937721 4937533 ID=cds.MS.gene26740.t1;Parent=MS.gene26740.t1
chr8.3 exon 4937286 4937449 4937286 ID=MS.gene26740.t1.exon4;Parent=MS.gene26740.t1
chr8.3 CDS 4937286 4937449 4937286 ID=cds.MS.gene26740.t1;Parent=MS.gene26740.t1
chr8.3 exon 4937116 4937194 4937116 ID=MS.gene26740.t1.exon5;Parent=MS.gene26740.t1
chr8.3 CDS 4937116 4937194 4937116 ID=cds.MS.gene26740.t1;Parent=MS.gene26740.t1
chr8.3 exon 4936477 4936605 4936477 ID=MS.gene26740.t1.exon6;Parent=MS.gene26740.t1
chr8.3 CDS 4936477 4936605 4936477 ID=cds.MS.gene26740.t1;Parent=MS.gene26740.t1
chr8.3 exon 4936250 4936377 4936250 ID=MS.gene26740.t1.exon7;Parent=MS.gene26740.t1
chr8.3 CDS 4936250 4936377 4936250 ID=cds.MS.gene26740.t1;Parent=MS.gene26740.t1
chr8.3 exon 4935764 4936148 4935764 ID=MS.gene26740.t1.exon8;Parent=MS.gene26740.t1
chr8.3 CDS 4935764 4936148 4935764 ID=cds.MS.gene26740.t1;Parent=MS.gene26740.t1
Gene Sequence

>MS.gene26740

ATGGTAACTGTTAGAGCTCTTCCTACAATGGTTGATTTTCAGAAGCTTGATTCGGATTCGAATAATGGTAACTGTTGTTTTTGTTTCATGTTTTTAATGCATTACTTGTTTCTTCCGGAAGTGTTAAAGTTTTGATATTTGTTGTGTAGGACCCAGTCCTTCGATTGAGGAGAAACTTGTTAAATCTCTTCCTCGTTTTCTTCGATGTCTAGTTAAGGACGATTTTCCTCGGGACCAGGTTTGTTTGAAACTTGTCTATTTTATCTCTAGTTTGAAATTTTGTTGTTTTGATTGGTTTTTTTGTGTGACTTTGTTTGTTTAGTATTACGCTGCTTTTGCACTCACAAACATAACAGCTGGAACTTCTGAGAACACTAAGTTGGTAATTGATCATGGGGCTGTACCAATGCTTGTCAACCTACTTAGTTCACCTAATGATGCTGTTCGAAACCAGGTATATTTATTTATTATACTTATATGTTATGTAGTAGCAGTAAAAGGTTTTTTATTTTTATTTTTTTGTTGCTGAACACTAAAACTCTGAAATTGTATTGTAGGCTGTGTTGGCATTGGGAAACATCGCCGCTGATTCCCCTAGTTGCCGTGATCTCGTTCTCAGTCATGGTGCCCTGATCCCGCTGTTATCCCACTTGAATGAGCACACAGATAATCTTTGTATGCTGAGAAATGCCACGTGGGCCCTGTCGAGCTTTTGCCTGGGCAAGCCACTACCCTTATTTGAGCAGGTACTTGTTATTTTTTGTTAAATTAAAACTAAACCTGCAAGAACACCTTTATATGTGTATTAATACTAGATTTTTGTGGACAGGTGAGGCCAGCGCTTCCAGCTCTCCAGCGTTTGCTTTTATCCAATGATGCAGAAGTCCTCGCAGATGCATGCTGGGCACTTTTCTCTCTTTCTGCTCGCACAATTGACAAAATCCAAGTGGTGATCGAGGCAGGTGTATGTGGCAGACTTGTGCAGCTCCTTCTGTAAGTACCTATTCTTCTATCCCTGCTCAAAACCATATTCTTTTGCTATTCTTGATTATTTTGGCTCTAATTGTATCTGCATCTTTTGAAGGCACCCATCTCCTTCTGTGCTGCTTCCTGCACTTCGCACGGTGGGAAATATTGTAACTGGAGATGATATGCAGACTCAGGTAATAATAAGTTGCTTATTCCAAATTCAATTTAACTGCTATTGGGTAAAGTACTGAATTCCTGCTGTGTTAGTTATTTTGGAAATCAAATTAAAATTTTAATTAAATATTATAACCTGAAATTATTCATAGGTGAGTTTTTCAAGTAAGTATGCGGTTGTTGAAAATTGATTGGCAATCTTTAGAAATATTAGCCTAGGGATCAATTTTGTTTTTTGAGGGGGATAAAGTTTAGTCATGCTTGCTAGCCATTGCTGGTGATTCACTGCTATTTATTACCATCAATCTAGTCTCTTAAGCCTAGGAATCAATTTTGTTTTTTGAGGGGGTTTGGGAATTTTATCTTAGGGATAAAGTTTAGTCATACTTGCTAGCCATTGCTGGTGATTCACTGCTATTATTTATTTTATTACCCTCAATCTAGTCTCTTCTCACCCCTTGTATAAGTATCATGTCATCTCATATGTCACCTGTGAGAATTACCTGATTTGGTGGTGCTCTTTTTGTCAGGTTGTTATCAATCATGGTTCACTCCAATGCCTTTTGAGCCTGTTGACCCATGATCACAGCAAAAATATTAAGCAAGAAGCTTGCAGGACTGTATCAAACATTACAGCTGGTAACGGAGAGCAGATACAGGTAAGCAAATAAATCCCATCTTTTTTATACTCAAATGACATCAAATATCATGGTTAATAAAGCGCAGTGAACTCTACCTTTTATTTATGTACGATGCAGGCTGTTATTGAAGCTGGTCTGATTGCTCCTCTGGTCAATCTTCTTCAAAATGCTGAATTTGACATTCAAAAAGAAGCTGGATGGGCTCTCTCTAATGCTGCATCTGGTGGTACCCACGCACAAATCAAGTACGTGAAGTCGTTTTTAATTGTTATTTTCTTGCCCTGCTTCGTGCTGCCAACATTGAAAATTTACGTATTAACTTACCAAATATTGTTGTTATTACAAGGTACTTGGCGAGCCAGGGTTGCATTAAGCCTCTGTGTGATTTACTTGTTTGCCCTGATTCAAGATTTGTCGCTGACTGTTTAGAAGGTCTTGAGAATTTTCTGAAGGTTGGAGAAGCAGAGAAAAACTTTGGTAACACGGGAGATGTCAACTTGTATGCTCAGATGATAGATATTAACGAGGTATTGGAAAAGATTGAAAACTTGCGGAGTCACGACAACAGTGAAATTTATGAGAAGGCTGTTAAAATTCTCAAGACATATTGGTTTGAAGATGAAGATGAAGATGAGACACTACCTCCAGGCAATGGTTCTCAACCTGGTTTCAACTATGGAGGCAGTGACATTCAGGCCCCACCAGACAGATTCAATTTCAGCAGAATGTGA

Protein sequence

>MS.gene26740.t1

MVTVRALPTMVDFQKLDSDSNNGPSPSIEEKLVKSLPRFLRCLVKDDFPRDQAVLALGNIAADSPSCRDLVLSHGALIPLLSHLNEHTDNLCMLRNATWALSSFCLGKPLPLFEQVRPALPALQRLLLSNDAEVLADACWALFSLSARTIDKIQVVIEAGVCGRLVQLLLHPSPSVLLPALRTVGNIVTGDDMQTQVVINHGSLQCLLSLLTHDHSKNIKQEACRTVSNITAGNGEQIQAVIEAGLIAPLVNLLQNAEFDIQKEAGWALSNAASGGTHAQIKYLASQGCIKPLCDLLVCPDSRFVADCLEGLENFLKVGEAEKNFGNTGDVNLYAQMIDINEVLEKIENLRSHDNSEIYEKAVKILKTYWFEDEDEDETLPPGNGSQPGFNYGGSDIQAPPDRFNFSRM