AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26743


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26743.t1 MTR_2g034900 67.640 445 93 5 7 406 91 529 0.0 581
MS.gene26743.t1 MTR_1g083810 70.213 376 107 4 35 408 161 533 0.0 536
MS.gene26743.t1 MTR_8g027585 73.889 360 91 2 50 409 92 448 0.0 523
MS.gene26743.t1 MTR_4g131510 73.988 346 88 2 35 379 83 427 0.0 510
MS.gene26743.t1 MTR_7g112350 68.533 375 113 4 35 407 161 532 3.95e-180 512
MS.gene26743.t1 MTR_4g133040 74.926 339 79 3 50 387 109 442 4.00e-174 495
MS.gene26743.t1 MTR_4g121435 68.156 358 105 5 50 406 179 528 1.22e-169 485
MS.gene26743.t1 MTR_4g132980 61.929 394 97 5 22 382 26 399 2.30e-160 459
MS.gene26743.t1 MTR_4g133030 59.859 426 119 6 5 384 9 428 3.73e-158 456
MS.gene26743.t1 MTR_4g131000 65.013 383 93 5 35 379 82 461 1.25e-153 442
MS.gene26743.t1 MTR_4g132980 70.345 290 67 2 93 382 1 271 1.67e-139 401
MS.gene26743.t1 MTR_4g127570 57.393 399 103 7 12 387 7 361 1.58e-135 395
MS.gene26743.t1 MTR_4g013265 52.826 407 88 9 21 409 4 324 9.87e-123 358
MS.gene26743.t1 MTR_1g053470 58.863 299 119 4 81 376 1 298 2.15e-113 334
MS.gene26743.t1 MTR_1g053470 58.863 299 119 4 81 376 1 298 3.44e-113 334
MS.gene26743.t1 MTR_1g053470 58.863 299 119 4 81 376 1 298 5.44e-112 333
MS.gene26743.t1 MTR_7g112150 48.182 330 165 6 47 373 190 516 5.94e-87 274
MS.gene26743.t1 MTR_4g132960 65.464 194 48 2 192 385 3 177 5.52e-76 235
MS.gene26743.t1 MTR_7g112160 43.675 332 159 9 47 373 190 498 1.73e-63 212
MS.gene26743.t1 MTR_4g132967 57.732 194 46 2 192 385 7 164 1.26e-60 195
MS.gene26743.t1 MTR_7g113400 46.639 238 122 5 47 282 190 424 2.81e-51 178
MS.gene26743.t1 MTR_4g124270 93.220 59 4 0 197 255 64 122 1.59e-28 110
MS.gene26743.t1 MTR_4g124270 33.143 175 87 7 32 203 7 154 1.18e-13 68.9
MS.gene26743.t1 MTR_1g066760 27.401 354 211 10 51 378 186 519 2.78e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26743.t1 AT3G06720 68.533 375 115 3 35 407 159 532 0.0 518
MS.gene26743.t1 AT3G06720 68.533 375 115 3 35 407 159 532 0.0 518
MS.gene26743.t1 AT4G16143 70.588 374 105 4 35 406 164 534 5.39e-179 509
MS.gene26743.t1 AT4G16143 70.588 374 105 4 35 406 164 534 5.39e-179 509
MS.gene26743.t1 AT4G02150 62.567 374 133 5 35 406 162 530 5.24e-161 464
MS.gene26743.t1 AT1G02690 61.436 376 140 3 35 406 163 537 1.30e-156 452
MS.gene26743.t1 AT1G09270 62.933 375 135 4 35 407 84 456 5.53e-156 448
MS.gene26743.t1 AT1G09270 62.933 375 135 4 35 407 166 538 2.45e-155 449
MS.gene26743.t1 AT1G09270 62.933 375 135 4 35 407 166 538 2.45e-155 449
MS.gene26743.t1 AT1G02690 61.273 377 140 4 35 406 163 538 9.96e-155 448
MS.gene26743.t1 AT5G49310 54.737 380 147 5 36 408 158 519 2.04e-125 372
MS.gene26743.t1 AT3G05720 55.422 332 140 2 47 371 160 490 1.17e-116 350
MS.gene26743.t1 AT3G05720 55.422 332 140 2 47 371 160 490 1.17e-116 350
MS.gene26743.t1 AT4G02150 64.000 250 86 3 35 282 162 409 5.07e-107 322
MS.gene26743.t1 AT5G52000 53.374 326 144 3 47 371 103 421 7.62e-104 315
MS.gene26743.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.99e-69 224
MS.gene26743.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.99e-69 224
MS.gene26743.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.99e-69 224
MS.gene26743.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.99e-69 224
MS.gene26743.t1 AT5G49305 39.842 379 167 7 12 382 58 383 1.99e-69 224
MS.gene26743.t1 AT1G32880 45.366 205 88 4 181 383 1 183 6.91e-51 169
MS.gene26743.t1 AT5G03070 25.496 353 219 9 51 378 186 519 4.30e-23 101

Find 95 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGTACCTGCTCAAATA+AGG 0.228963 8.3:+4955039 None:intergenic
CTTGATTCGGATTCGAATAA+TGG 0.269740 8.3:-4955726 MS.gene26743:intron
TTAAAATTCTCAAGACATAT+TGG 0.304501 8.3:-4953399 MS.gene26743:CDS
TGCTGTGATCATGGGTCAAC+AGG 0.304780 8.3:+4954060 None:intergenic
TCTCAACCTGGTTTCAACTA+TGG 0.310751 8.3:-4953331 MS.gene26743:CDS
CGCTGGAGAGCTGGAAGCGC+TGG 0.336154 8.3:+4954936 None:intergenic
TCAGCGACAAATCTTGAATC+AGG 0.360435 8.3:+4953589 None:intergenic
TACAAGGTACTTGGCGAGCC+AGG 0.363447 8.3:-4953647 MS.gene26743:intron
ATATTAAGCAAGAAGCTTGC+AGG 0.367578 8.3:-4954034 MS.gene26743:CDS
AGCTGGTCTGATTGCTCCTC+TGG 0.375278 8.3:-4953859 MS.gene26743:CDS
TGCGAGGACTTCTGCATCAT+TGG 0.378438 8.3:+4954902 None:intergenic
TGCCCAGGCAAAAGCTCGAC+AGG 0.388941 8.3:+4955071 None:intergenic
TGTCAGGTTGTTATCAATCA+TGG 0.398433 8.3:-4954104 MS.gene26743:intron
CTATGGAGGCAGTGACATTC+AGG 0.400531 8.3:-4953314 MS.gene26743:CDS
GATAGATATTAACGAGGTAT+TGG 0.400787 8.3:-4953476 MS.gene26743:CDS
TTCTGAAAATCAACCATTGT+AGG 0.417482 8.3:+4955750 None:intergenic
AGTGGGATAACAGCGGGATC+AGG 0.418748 8.3:+4955143 None:intergenic
TGTTGTTATTACAAGGTACT+TGG 0.432672 8.3:-4953656 MS.gene26743:intron
AAGTCCTCGCAGATGCATGC+TGG 0.438259 8.3:-4954890 MS.gene26743:CDS
CCAGGCAATGGTTCTCAACC+TGG 0.441909 8.3:-4953343 MS.gene26743:CDS
CATGGGTCAACAGGCTCAAA+AGG 0.443327 8.3:+4954069 None:intergenic
ACGGTGGGAAATATTGTAAC+TGG 0.450687 8.3:-4954650 MS.gene26743:CDS
ATTGTAGGCTGTGTTGGCAT+TGG 0.456868 8.3:-4955221 MS.gene26743:intron
ACAAGTACCTGCTCAAATAA+GGG 0.456969 8.3:+4955040 None:intergenic
AAAAGCAAACGCTGGAGAGC+TGG 0.461703 8.3:+4954927 None:intergenic
CTGCTGAAATTGAATCTGTC+TGG 0.469641 8.3:+4953286 None:intergenic
ATCCAAGTGGTGATCGAGGC+AGG 0.471609 8.3:-4954831 MS.gene26743:CDS
TTGTAGGCTGTGTTGGCATT+GGG 0.472949 8.3:-4955220 MS.gene26743:intron
TTTCCCACCGTGCGAAGTGC+AGG 0.475696 8.3:+4954662 None:intergenic
CCAGGTTGAGAACCATTGCC+TGG 0.484326 8.3:+4953343 None:intergenic
GCTCTCTCTAATGCTGCATC+TGG 0.485113 8.3:-4953786 MS.gene26743:CDS
CGTGATCTCGTTCTCAGTCA+TGG 0.491377 8.3:-4955169 MS.gene26743:CDS
CACGTACTTGATTTGTGCGT+GGG 0.494462 8.3:+4953758 None:intergenic
TTTGTCGCTGACTGTTTAGA+AGG 0.494955 8.3:-4953577 MS.gene26743:CDS
GGAAGCAGCACAGAAGGAGA+TGG 0.495663 8.3:+4954683 None:intergenic
AGAACGAGATCACGGCAACT+AGG 0.498208 8.3:+4955178 None:intergenic
GCCACTACCCTTATTTGAGC+AGG 0.507615 8.3:-4955047 MS.gene26743:intron
CACCTGCCTCGATCACCACT+TGG 0.511677 8.3:+4954829 None:intergenic
AGTGCAGGAAGCAGCACAGA+AGG 0.515695 8.3:+4954677 None:intergenic
ATGCAGGCTGTTATTGAAGC+TGG 0.519811 8.3:-4953876 MS.gene26743:intron
CTGAAATTGAATCTGTCTGG+TGG 0.522890 8.3:+4953289 None:intergenic
CTTCCTGCACTTCGCACGGT+GGG 0.528053 8.3:-4954665 MS.gene26743:CDS
TCAACAGGCTCAAAAGGCAT+TGG 0.531824 8.3:+4954075 None:intergenic
CATTCAAGTGGGATAACAGC+GGG 0.538303 8.3:+4955137 None:intergenic
AATTGTATTGTAGGCTGTGT+TGG 0.538992 8.3:-4955227 MS.gene26743:intron
CTCTCTAATGCTGCATCTGG+TGG 0.540235 8.3:-4953783 MS.gene26743:CDS
ACAAGGTACTTGGCGAGCCA+GGG 0.543294 8.3:-4953646 MS.gene26743:intron
GAACGAGATCACGGCAACTA+GGG 0.543826 8.3:+4955179 None:intergenic
TGAAATTGAATCTGTCTGGT+GGG 0.543835 8.3:+4953290 None:intergenic
ACAAGTTTCTCCTCAATCGA+AGG 0.545244 8.3:+4955614 None:intergenic
GTGGGATAACAGCGGGATCA+GGG 0.545912 8.3:+4955144 None:intergenic
TGGTAACGGAGAGCAGATAC+AGG 0.546457 8.3:-4953991 MS.gene26743:intron
AGTCCTCGCAGATGCATGCT+GGG 0.547868 8.3:-4954889 MS.gene26743:CDS
GCTGCTTCCTGCACTTCGCA+CGG 0.549494 8.3:-4954669 MS.gene26743:CDS
ACCTGCTCAAATAAGGGTAG+TGG 0.550877 8.3:+4955046 None:intergenic
AGGACCCACTCCTTCGATTG+AGG 0.560057 8.3:-4955624 MS.gene26743:CDS
TGGAAAAGATTGAAAACTTG+CGG 0.564036 8.3:-4953456 MS.gene26743:CDS
GAAATTGAATCTGTCTGGTG+GGG 0.564329 8.3:+4953291 None:intergenic
TCACGTACTTGATTTGTGCG+TGG 0.568960 8.3:+4953757 None:intergenic
ACTGTATCAAACATTACAGC+TGG 0.574902 8.3:-4954011 MS.gene26743:CDS
GAAGCAGCACAGAAGGAGAT+GGG 0.575204 8.3:+4954684 None:intergenic
GTGATCGAGGCAGGTGTATG+TGG 0.578562 8.3:-4954822 MS.gene26743:CDS
CTGCCTCCATAGTTGAAACC+AGG 0.585202 8.3:+4953325 None:intergenic
TATCTGTGTGCTCATTCAAG+TGG 0.588493 8.3:+4955125 None:intergenic
ATAAGGGTAGTGGCTTGCCC+AGG 0.590201 8.3:+4955056 None:intergenic
TTTCTCCTCAATCGAAGGAG+TGG 0.593509 8.3:+4955619 None:intergenic
CAACAGTGAAATTTATGAGA+AGG 0.597194 8.3:-4953425 MS.gene26743:CDS
CAACCTGGTTTCAACTATGG+AGG 0.597434 8.3:-4953328 MS.gene26743:CDS
TGTTAGAGCTCTTCCTACAA+TGG 0.599686 8.3:-4955763 MS.gene26743:CDS
TGGAGATGATATGCAGACTC+AGG 0.600798 8.3:-4954630 MS.gene26743:intron
TTCTCCTCAATCGAAGGAGT+GGG 0.604157 8.3:+4955620 None:intergenic
ATCTGTGTGCTCATTCAAGT+GGG 0.606077 8.3:+4955126 None:intergenic
TCAAACATTACAGCTGGTAA+CGG 0.606786 8.3:-4954005 MS.gene26743:CDS
TTCAAACAAACCTGGTCCCG+AGG 0.609520 8.3:+4955545 None:intergenic
GCTTCCTGCACTTCGCACGG+TGG 0.610152 8.3:-4954666 MS.gene26743:CDS
CAGCGACAAATCTTGAATCA+GGG 0.610267 8.3:+4953590 None:intergenic
CATGACTGAGAACGAGATCA+CGG 0.611773 8.3:+4955170 None:intergenic
ACAGAGGCTTAATGCAACCC+TGG 0.616878 8.3:+4953629 None:intergenic
CAAAATCCAAGTGGTGATCG+AGG 0.619994 8.3:-4954835 MS.gene26743:CDS
AACGAGATCACGGCAACTAG+GGG 0.622955 8.3:+4955180 None:intergenic
GAAGATGAGACACTACCTCC+AGG 0.623625 8.3:-4953361 MS.gene26743:CDS
GAGACACTACCTCCAGGCAA+TGG 0.636873 8.3:-4953355 MS.gene26743:CDS
CATTGGATAAAAGCAAACGC+TGG 0.641534 8.3:+4954919 None:intergenic
CACAATTGACAAAATCCAAG+TGG 0.644084 8.3:-4954844 MS.gene26743:CDS
GCCCAGGCAAAAGCTCGACA+GGG 0.645220 8.3:+4955072 None:intergenic
AAAGCTCGACAGGGCCCACG+TGG 0.657259 8.3:+4955081 None:intergenic
ACTAGACATCGAAGAAAACG+AGG 0.698046 8.3:+4955581 None:intergenic
ACGGCAACTAGGGGAATCAG+CGG 0.700671 8.3:+4955189 None:intergenic
GTGCCCAGCATGCATCTGCG+AGG 0.706898 8.3:+4954886 None:intergenic
TCATTCAAGTGGGATAACAG+CGG 0.731290 8.3:+4955136 None:intergenic
GGTTGAGAACCATTGCCTGG+AGG 0.737525 8.3:+4953346 None:intergenic
TATGCTGAGAAATGCCACGT+GGG 0.758077 8.3:-4955095 MS.gene26743:CDS
GTATGCTGAGAAATGCCACG+TGG 0.787026 8.3:-4955096 MS.gene26743:CDS
CAAACAAGTAAATCACACAG+AGG 0.794778 8.3:+4953613 None:intergenic
TCAGATGATAGATATTAACG+AGG 0.808061 8.3:-4953482 MS.gene26743:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAATAAATAAATATACC+TGG + chr8.3:4953732-4953751 None:intergenic 15.0%
!! TAGTATTAATACACATATAA+AGG + chr8.3:4954073-4954092 None:intergenic 15.0%
!! AAATTCAATTTAACTGCTAT+TGG - chr8.3:4954464-4954483 MS.gene26743:intron 20.0%
!! AATAGCAGTTAAATTGAATT+TGG + chr8.3:4954465-4954484 None:intergenic 20.0%
!! AATTCAATTTAACTGCTATT+GGG - chr8.3:4954465-4954484 MS.gene26743:intron 20.0%
!! CATTTGAGTATAAAAAAGAT+GGG + chr8.3:4955098-4955117 None:intergenic 20.0%
!! CTTGTAATAACAACAATATT+TGG + chr8.3:4955389-4955408 None:intergenic 20.0%
!! TATAACCTGAAATTATTCAT+AGG - chr8.3:4954552-4954571 MS.gene26743:intron 20.0%
!! TCATTTGAGTATAAAAAAGA+TGG + chr8.3:4955099-4955118 None:intergenic 20.0%
!! TTAAAATTCTCAAGACATAT+TGG - chr8.3:4955651-4955670 MS.gene26743:intron 20.0%
!!! AAAAAACAAAATTGATTCCT+AGG + chr8.3:4954744-4954763 None:intergenic 20.0%
!!! AATACGTAAATTTTCAATGT+TGG + chr8.3:4955360-4955379 None:intergenic 20.0%
!!! AATCAATTTTGTTTTTTGAG+GGG - chr8.3:4954747-4954766 MS.gene26743:intron 20.0%
!!! CAAATATTGTTGTTATTACA+AGG - chr8.3:4955387-4955406 MS.gene26743:intron 20.0%
!!! GAATCAATTTTGTTTTTTGA+GGG - chr8.3:4954746-4954765 MS.gene26743:intron 20.0%
!!! GTATTAATACTAGATTTTTG+TGG - chr8.3:4954081-4954100 MS.gene26743:CDS 20.0%
!!! TGAAATTTTGTTGTTTTGAT+TGG - chr8.3:4953551-4953570 MS.gene26743:CDS 20.0%
!!! TTTGCTATTCTTGATTATTT+TGG - chr8.3:4954313-4954332 MS.gene26743:intron 20.0%
! AAAAAACAAAATTGATCCCT+AGG + chr8.3:4954639-4954658 None:intergenic 25.0%
! ATGACATGATACTTATACAA+GGG + chr8.3:4954880-4954899 None:intergenic 25.0%
! TATCAAAACTTTAACACTTC+CGG + chr8.3:4953396-4953415 None:intergenic 25.0%
! TCAAATGACATCAAATATCA+TGG - chr8.3:4955111-4955130 MS.gene26743:CDS 25.0%
! TCAAGAATAGCAAAAGAATA+TGG + chr8.3:4954307-4954326 None:intergenic 25.0%
!! ATCTTTAGAAATATTAGCCT+AGG - chr8.3:4954619-4954638 MS.gene26743:intron 25.0%
!! TCTTTAGAAATATTAGCCTA+GGG - chr8.3:4954620-4954639 MS.gene26743:intron 25.0%
!!! AAACTCTGAAATTGTATTGT+AGG - chr8.3:4953814-4953833 MS.gene26743:CDS 25.0%
!!! AATATTTTTGCTGTGATCAT+GGG + chr8.3:4955001-4955020 None:intergenic 25.0%
!!! AGTTTTGATATTTGTTGTGT+AGG - chr8.3:4953406-4953425 MS.gene26743:CDS 25.0%
!!! ATCAATTTTGTTTTTTGAGG+GGG - chr8.3:4954643-4954662 MS.gene26743:CDS 25.0%
!!! GATCAATTTTGTTTTTTGAG+GGG - chr8.3:4954642-4954661 MS.gene26743:CDS 25.0%
!!! GGAATCAATTTTGTTTTTTG+AGG - chr8.3:4954745-4954764 MS.gene26743:intron 25.0%
!!! GGATCAATTTTGTTTTTTGA+GGG - chr8.3:4954641-4954660 MS.gene26743:CDS 25.0%
!!! TAATATTTTTGCTGTGATCA+TGG + chr8.3:4955002-4955021 None:intergenic 25.0%
ACTCACCTATGAATAATTTC+AGG + chr8.3:4954560-4954579 None:intergenic 30.0%
CAACAGTGAAATTTATGAGA+AGG - chr8.3:4955625-4955644 MS.gene26743:CDS 30.0%
CTGCATCGTACATAAATAAA+AGG + chr8.3:4955160-4955179 None:intergenic 30.0%
GATAGATATTAACGAGGTAT+TGG - chr8.3:4955574-4955593 MS.gene26743:CDS 30.0%
GATGACATGATACTTATACA+AGG + chr8.3:4954881-4954900 None:intergenic 30.0%
TCAGATGATAGATATTAACG+AGG - chr8.3:4955568-4955587 MS.gene26743:CDS 30.0%
TGACATGATACTTATACAAG+GGG + chr8.3:4954879-4954898 None:intergenic 30.0%
TGGAAAAGATTGAAAACTTG+CGG - chr8.3:4955594-4955613 MS.gene26743:CDS 30.0%
TGTTATGTAGTAGCAGTAAA+AGG - chr8.3:4953757-4953776 MS.gene26743:intron 30.0%
TTTGACATTCAAAAAGAAGC+TGG - chr8.3:4955237-4955256 MS.gene26743:intron 30.0%
! AATACTAGATTTTTGTGGAC+AGG - chr8.3:4954086-4954105 MS.gene26743:CDS 30.0%
! AATGCATTACTTGTTTCTTC+CGG - chr8.3:4953374-4953393 MS.gene26743:CDS 30.0%
! AGAGAAAAACTTTGGTAACA+CGG - chr8.3:4955526-4955545 MS.gene26743:intron 30.0%
! ATTGTATCTGCATCTTTTGA+AGG - chr8.3:4954341-4954360 MS.gene26743:intron 30.0%
! GGTTTGGGAATTTTATCTTA+GGG - chr8.3:4954769-4954788 MS.gene26743:intron 30.0%
! TGATTTTCAGAAGCTTGATT+CGG - chr8.3:4953311-4953330 MS.gene26743:CDS 30.0%
! TGTTGTTATTACAAGGTACT+TGG - chr8.3:4955394-4955413 MS.gene26743:intron 30.0%
! TTCTGAAAATCAACCATTGT+AGG + chr8.3:4953303-4953322 None:intergenic 30.0%
! TTTTCTTCGATGTCTAGTTA+AGG - chr8.3:4953474-4953493 MS.gene26743:CDS 30.0%
!! ACTAAGTTGGTAATTGATCA+TGG - chr8.3:4953652-4953671 MS.gene26743:intron 30.0%
!! CTAAGTTGGTAATTGATCAT+GGG - chr8.3:4953653-4953672 MS.gene26743:intron 30.0%
!! CTTTTATTTATGTACGATGC+AGG - chr8.3:4955158-4955177 MS.gene26743:CDS 30.0%
!! TAAGTTGGTAATTGATCATG+GGG - chr8.3:4953654-4953673 MS.gene26743:intron 30.0%
!!! AAAAGAATATGGTTTTGAGC+AGG + chr8.3:4954296-4954315 None:intergenic 30.0%
!!! AAAGAATATGGTTTTGAGCA+GGG + chr8.3:4954295-4954314 None:intergenic 30.0%
!!! GAGTTTTTCAAGTAAGTATG+CGG - chr8.3:4954576-4954595 MS.gene26743:intron 30.0%
!!! GGGATCAATTTTGTTTTTTG+AGG - chr8.3:4954640-4954659 MS.gene26743:CDS 30.0%
AACAAGTACCTGCTCAAATA+AGG + chr8.3:4954014-4954033 None:intergenic 35.0%
AATTGTATTGTAGGCTGTGT+TGG - chr8.3:4953823-4953842 MS.gene26743:CDS 35.0%
ACAAGTACCTGCTCAAATAA+GGG + chr8.3:4954013-4954032 None:intergenic 35.0%
ACATTCAAAAAGAAGCTGGA+TGG - chr8.3:4955241-4955260 MS.gene26743:intron 35.0%
ACTGTATCAAACATTACAGC+TGG - chr8.3:4955039-4955058 MS.gene26743:intron 35.0%
AGACAAGTTTCAAACAAACC+TGG + chr8.3:4953516-4953535 None:intergenic 35.0%
ATATTAAGCAAGAAGCTTGC+AGG - chr8.3:4955016-4955035 MS.gene26743:intron 35.0%
CAAACAAGTAAATCACACAG+AGG + chr8.3:4955440-4955459 None:intergenic 35.0%
CACAATTGACAAAATCCAAG+TGG - chr8.3:4954206-4954225 MS.gene26743:intron 35.0%
CATCATTAGGTGAACTAAGT+AGG + chr8.3:4953699-4953718 None:intergenic 35.0%
CATTCAAAAAGAAGCTGGAT+GGG - chr8.3:4955242-4955261 MS.gene26743:intron 35.0%
GAAGAATAGGTACTTACAGA+AGG + chr8.3:4954269-4954288 None:intergenic 35.0%
TCAAACATTACAGCTGGTAA+CGG - chr8.3:4955045-4955064 MS.gene26743:intron 35.0%
TCCAAAATAACTAACACAGC+AGG + chr8.3:4954505-4954524 None:intergenic 35.0%
TGAAATTGAATCTGTCTGGT+GGG + chr8.3:4955763-4955782 None:intergenic 35.0%
TGCGGTTGTTGAAAATTGAT+TGG - chr8.3:4954594-4954613 MS.gene26743:intron 35.0%
! AACTTCTGAGAACACTAAGT+TGG - chr8.3:4953639-4953658 MS.gene26743:CDS 35.0%
! AGGTCTTGAGAATTTTCTGA+AGG - chr8.3:4955493-4955512 MS.gene26743:intron 35.0%
! GAGAAAAACTTTGGTAACAC+GGG - chr8.3:4955527-4955546 MS.gene26743:intron 35.0%
! GGGTTTGGGAATTTTATCTT+AGG - chr8.3:4954768-4954787 MS.gene26743:intron 35.0%
! TAGTTAAGGACGATTTTCCT+CGG - chr8.3:4953488-4953507 MS.gene26743:CDS 35.0%
! TCCTGCTGTGTTAGTTATTT+TGG - chr8.3:4954501-4954520 MS.gene26743:intron 35.0%
! TGTCAGGTTGTTATCAATCA+TGG - chr8.3:4954946-4954965 MS.gene26743:intron 35.0%
!! ACATATAAAGGTGTTCTTGC+AGG + chr8.3:4954061-4954080 None:intergenic 35.0%
!! CTTGAGAATTTTCTGAAGGT+TGG - chr8.3:4955497-4955516 MS.gene26743:intron 35.0%
!! CTTGATTCGGATTCGAATAA+TGG - chr8.3:4953324-4953343 MS.gene26743:CDS 35.0%
!! TTTTGAAGAAGATTGACCAG+AGG + chr8.3:4955210-4955229 None:intergenic 35.0%
!!! TTTGTTTTTTGAGGGGGTTT+GGG - chr8.3:4954754-4954773 MS.gene26743:intron 35.0%
!!! TTTTGTTTTTTGAGGGGGTT+TGG - chr8.3:4954753-4954772 MS.gene26743:intron 35.0%
ACAAGTTTCTCCTCAATCGA+AGG + chr8.3:4953439-4953458 None:intergenic 40.0%
ACGGTGGGAAATATTGTAAC+TGG - chr8.3:4954400-4954419 MS.gene26743:intron 40.0%
ACTAGACATCGAAGAAAACG+AGG + chr8.3:4953472-4953491 None:intergenic 40.0%
ATCTGTGTGCTCATTCAAGT+GGG + chr8.3:4953927-4953946 None:intergenic 40.0%
CAATCTAGTCTCTTAAGCCT+AGG - chr8.3:4954724-4954743 MS.gene26743:intron 40.0%
CAGCGACAAATCTTGAATCA+GGG + chr8.3:4955463-4955482 None:intergenic 40.0%
CATTGGATAAAAGCAAACGC+TGG + chr8.3:4954134-4954153 None:intergenic 40.0%
CCAAATCAGGTAATTCTCAC+AGG + chr8.3:4954914-4954933 None:intergenic 40.0%
CCTGTGAGAATTACCTGATT+TGG - chr8.3:4954911-4954930 MS.gene26743:CDS 40.0%
CTGAAATTGAATCTGTCTGG+TGG + chr8.3:4955764-4955783 None:intergenic 40.0%
CTGCTGAAATTGAATCTGTC+TGG + chr8.3:4955767-4955786 None:intergenic 40.0%
GAAATTGAATCTGTCTGGTG+GGG + chr8.3:4955762-4955781 None:intergenic 40.0%
GGAGAAGCAGAGAAAAACTT+TGG - chr8.3:4955518-4955537 MS.gene26743:intron 40.0%
GGCTTAAGAGACTAGATTGA+TGG + chr8.3:4954723-4954742 None:intergenic 40.0%
GTGAGAAGAGACTAGATTGA+GGG + chr8.3:4954857-4954876 None:intergenic 40.0%
TAATGATGCTGTTCGAAACC+AGG - chr8.3:4953711-4953730 MS.gene26743:intron 40.0%
TATCTGTGTGCTCATTCAAG+TGG + chr8.3:4953928-4953947 None:intergenic 40.0%
TCAGCGACAAATCTTGAATC+AGG + chr8.3:4955464-4955483 None:intergenic 40.0%
TCATTCAAGTGGGATAACAG+CGG + chr8.3:4953917-4953936 None:intergenic 40.0%
TCTCAACCTGGTTTCAACTA+TGG - chr8.3:4955719-4955738 MS.gene26743:intron 40.0%
TGGTTTCGAACAGCATCATT+AGG + chr8.3:4953712-4953731 None:intergenic 40.0%
TGTTAGAGCTCTTCCTACAA+TGG - chr8.3:4953287-4953306 MS.gene26743:CDS 40.0%
TTGAGCAGGGATAGAAGAAT+AGG + chr8.3:4954282-4954301 None:intergenic 40.0%
! AGTTAAGGACGATTTTCCTC+GGG - chr8.3:4953489-4953508 MS.gene26743:CDS 40.0%
! CTAAGTAGGTTGACAAGCAT+TGG + chr8.3:4953685-4953704 None:intergenic 40.0%
! TAGATTTTTGTGGACAGGTG+AGG - chr8.3:4954091-4954110 MS.gene26743:CDS 40.0%
! TTTGTCGCTGACTGTTTAGA+AGG - chr8.3:4955473-4955492 MS.gene26743:intron 40.0%
!! AAAAAGAGCACCACCAAATC+AGG + chr8.3:4954927-4954946 None:intergenic 40.0%
!! GTGAGAATTACCTGATTTGG+TGG - chr8.3:4954914-4954933 MS.gene26743:CDS 40.0%
ACCTGCTCAAATAAGGGTAG+TGG + chr8.3:4954007-4954026 None:intergenic 45.0%
ATGCAGGCTGTTATTGAAGC+TGG - chr8.3:4955174-4955193 MS.gene26743:CDS 45.0%
CAAAATCCAAGTGGTGATCG+AGG - chr8.3:4954215-4954234 MS.gene26743:intron 45.0%
CAACCTGGTTTCAACTATGG+AGG - chr8.3:4955722-4955741 MS.gene26743:intron 45.0%
CATGACTGAGAACGAGATCA+CGG + chr8.3:4953883-4953902 None:intergenic 45.0%
CATTCAAGTGGGATAACAGC+GGG + chr8.3:4953916-4953935 None:intergenic 45.0%
GCACTCACAAACATAACAGC+TGG - chr8.3:4953616-4953635 MS.gene26743:CDS 45.0%
GGTGAGAAGAGACTAGATTG+AGG + chr8.3:4954858-4954877 None:intergenic 45.0%
TAGCAGTGAATCACCAGCAA+TGG + chr8.3:4954693-4954712 None:intergenic 45.0%
TATGCTGAGAAATGCCACGT+GGG - chr8.3:4953955-4953974 MS.gene26743:intron 45.0%
TGGAGATGATATGCAGACTC+AGG - chr8.3:4954420-4954439 MS.gene26743:intron 45.0%
TTCTCCTCAATCGAAGGAGT+GGG + chr8.3:4953433-4953452 None:intergenic 45.0%
TTTCTCCTCAATCGAAGGAG+TGG + chr8.3:4953434-4953453 None:intergenic 45.0%
! ATTGTAGGCTGTGTTGGCAT+TGG - chr8.3:4953829-4953848 MS.gene26743:CDS 45.0%
! TCAACAGGCTCAAAAGGCAT+TGG + chr8.3:4954978-4954997 None:intergenic 45.0%
! TCATACTTGCTAGCCATTGC+TGG - chr8.3:4954803-4954822 MS.gene26743:CDS 45.0%
! TTGTAGGCTGTGTTGGCATT+GGG - chr8.3:4953830-4953849 MS.gene26743:CDS 45.0%
!! CACGTACTTGATTTGTGCGT+GGG + chr8.3:4955295-4955314 None:intergenic 45.0%
!! TCACGTACTTGATTTGTGCG+TGG + chr8.3:4955296-4955315 None:intergenic 45.0%
!!! TTGGTGGTGCTCTTTTTGTC+AGG - chr8.3:4954930-4954949 MS.gene26743:CDS 45.0%
AAAAGCAAACGCTGGAGAGC+TGG + chr8.3:4954126-4954145 None:intergenic 50.0%
AACGAGATCACGGCAACTAG+GGG + chr8.3:4953873-4953892 None:intergenic 50.0%
AATGTTGGCAGCACGAAGCA+GGG + chr8.3:4955345-4955364 None:intergenic 50.0%
ACAGAGGCTTAATGCAACCC+TGG + chr8.3:4955424-4955443 None:intergenic 50.0%
AGAACGAGATCACGGCAACT+AGG + chr8.3:4953875-4953894 None:intergenic 50.0%
CATGGGTCAACAGGCTCAAA+AGG + chr8.3:4954984-4955003 None:intergenic 50.0%
CGTGATCTCGTTCTCAGTCA+TGG - chr8.3:4953881-4953900 MS.gene26743:intron 50.0%
CTATGGAGGCAGTGACATTC+AGG - chr8.3:4955736-4955755 MS.gene26743:CDS 50.0%
CTCTCTAATGCTGCATCTGG+TGG - chr8.3:4955267-4955286 MS.gene26743:intron 50.0%
CTGCCTCCATAGTTGAAACC+AGG + chr8.3:4955728-4955747 None:intergenic 50.0%
GAACGAGATCACGGCAACTA+GGG + chr8.3:4953874-4953893 None:intergenic 50.0%
GAAGATGAGACACTACCTCC+AGG - chr8.3:4955689-4955708 MS.gene26743:intron 50.0%
GAAGCAGCACAGAAGGAGAT+GGG + chr8.3:4954369-4954388 None:intergenic 50.0%
GCTCTCTCTAATGCTGCATC+TGG - chr8.3:4955264-4955283 MS.gene26743:intron 50.0%
GTATGCTGAGAAATGCCACG+TGG - chr8.3:4953954-4953973 MS.gene26743:intron 50.0%
TGCGAGGACTTCTGCATCAT+TGG + chr8.3:4954151-4954170 None:intergenic 50.0%
TGCTGTGATCATGGGTCAAC+AGG + chr8.3:4954993-4955012 None:intergenic 50.0%
TTCAAACAAACCTGGTCCCG+AGG + chr8.3:4953508-4953527 None:intergenic 50.0%
! GCCACTACCCTTATTTGAGC+AGG - chr8.3:4954003-4954022 MS.gene26743:CDS 50.0%
! TCATGCTTGCTAGCCATTGC+TGG - chr8.3:4954677-4954696 MS.gene26743:CDS 50.0%
!! TGGTAACGGAGAGCAGATAC+AGG - chr8.3:4955059-4955078 MS.gene26743:CDS 50.0%
AAGTCCTCGCAGATGCATGC+TGG - chr8.3:4954160-4954179 MS.gene26743:intron 55.0%
ACGGCAACTAGGGGAATCAG+CGG + chr8.3:4953864-4953883 None:intergenic 55.0%
AGGACCCACTCCTTCGATTG+AGG - chr8.3:4953426-4953445 MS.gene26743:CDS 55.0%
AGTCCTCGCAGATGCATGCT+GGG - chr8.3:4954161-4954180 MS.gene26743:intron 55.0%
AGTGCAGGAAGCAGCACAGA+AGG + chr8.3:4954376-4954395 None:intergenic 55.0%
AGTGGGATAACAGCGGGATC+AGG + chr8.3:4953910-4953929 None:intergenic 55.0%
ATCCAAGTGGTGATCGAGGC+AGG - chr8.3:4954219-4954238 MS.gene26743:intron 55.0%
CAATGTTGGCAGCACGAAGC+AGG + chr8.3:4955346-4955365 None:intergenic 55.0%
CCAGGCAATGGTTCTCAACC+TGG - chr8.3:4955707-4955726 MS.gene26743:intron 55.0%
GAGACACTACCTCCAGGCAA+TGG - chr8.3:4955695-4955714 MS.gene26743:intron 55.0%
GGAAGCAGCACAGAAGGAGA+TGG + chr8.3:4954370-4954389 None:intergenic 55.0%
GGTTGAGAACCATTGCCTGG+AGG + chr8.3:4955707-4955726 None:intergenic 55.0%
GTGATCGAGGCAGGTGTATG+TGG - chr8.3:4954228-4954247 MS.gene26743:intron 55.0%
GTGGGATAACAGCGGGATCA+GGG + chr8.3:4953909-4953928 None:intergenic 55.0%
! ACAAGGTACTTGGCGAGCCA+GGG - chr8.3:4955404-4955423 MS.gene26743:intron 55.0%
! AGCTGGTCTGATTGCTCCTC+TGG - chr8.3:4955191-4955210 MS.gene26743:CDS 55.0%
! ATAAGGGTAGTGGCTTGCCC+AGG + chr8.3:4953997-4954016 None:intergenic 55.0%
! CCAGGTTGAGAACCATTGCC+TGG + chr8.3:4955710-4955729 None:intergenic 55.0%
! TACAAGGTACTTGGCGAGCC+AGG - chr8.3:4955403-4955422 MS.gene26743:intron 55.0%
CACCTGCCTCGATCACCACT+TGG + chr8.3:4954224-4954243 None:intergenic 60.0%
CTTCCTGCACTTCGCACGGT+GGG - chr8.3:4954385-4954404 MS.gene26743:intron 60.0%
GCCCAGGCAAAAGCTCGACA+GGG + chr8.3:4953981-4954000 None:intergenic 60.0%
GCTGCTTCCTGCACTTCGCA+CGG - chr8.3:4954381-4954400 MS.gene26743:intron 60.0%
TGCCCAGGCAAAAGCTCGAC+AGG + chr8.3:4953982-4954001 None:intergenic 60.0%
TTTCCCACCGTGCGAAGTGC+AGG + chr8.3:4954391-4954410 None:intergenic 60.0%
! GCCCTGTCGAGCTTTTGCCT+GGG - chr8.3:4953977-4953996 MS.gene26743:intron 60.0%
! GGACGATTTTCCTCGGGACC+AGG - chr8.3:4953495-4953514 MS.gene26743:CDS 60.0%
AAAGCTCGACAGGGCCCACG+TGG + chr8.3:4953972-4953991 None:intergenic 65.0%
GCTTCCTGCACTTCGCACGG+TGG - chr8.3:4954384-4954403 MS.gene26743:intron 65.0%
GTGCCCAGCATGCATCTGCG+AGG + chr8.3:4954167-4954186 None:intergenic 65.0%
! GGCCCTGTCGAGCTTTTGCC+TGG - chr8.3:4953976-4953995 MS.gene26743:intron 65.0%
! CGCTGGAGAGCTGGAAGCGC+TGG + chr8.3:4954117-4954136 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 4953279 4955793 4953279 ID=MS.gene26743
chr8.3 mRNA 4953279 4955793 4953279 ID=MS.gene26743.t1;Parent=MS.gene26743
chr8.3 exon 4955727 4955793 4955727 ID=MS.gene26743.t1.exon1;Parent=MS.gene26743.t1
chr8.3 CDS 4955727 4955793 4955727 ID=cds.MS.gene26743.t1;Parent=MS.gene26743.t1
chr8.3 exon 4955556 4955644 4955556 ID=MS.gene26743.t1.exon2;Parent=MS.gene26743.t1
chr8.3 CDS 4955556 4955644 4955556 ID=cds.MS.gene26743.t1;Parent=MS.gene26743.t1
chr8.3 exon 4955048 4955236 4955048 ID=MS.gene26743.t1.exon3;Parent=MS.gene26743.t1
chr8.3 CDS 4955048 4955236 4955048 ID=cds.MS.gene26743.t1;Parent=MS.gene26743.t1
chr8.3 exon 4954801 4954964 4954801 ID=MS.gene26743.t1.exon4;Parent=MS.gene26743.t1
chr8.3 CDS 4954801 4954964 4954801 ID=cds.MS.gene26743.t1;Parent=MS.gene26743.t1
chr8.3 exon 4954631 4954709 4954631 ID=MS.gene26743.t1.exon5;Parent=MS.gene26743.t1
chr8.3 CDS 4954631 4954709 4954631 ID=cds.MS.gene26743.t1;Parent=MS.gene26743.t1
chr8.3 exon 4953992 4954120 4953992 ID=MS.gene26743.t1.exon6;Parent=MS.gene26743.t1
chr8.3 CDS 4953992 4954120 4953992 ID=cds.MS.gene26743.t1;Parent=MS.gene26743.t1
chr8.3 exon 4953765 4953892 4953765 ID=MS.gene26743.t1.exon7;Parent=MS.gene26743.t1
chr8.3 CDS 4953765 4953892 4953765 ID=cds.MS.gene26743.t1;Parent=MS.gene26743.t1
chr8.3 exon 4953279 4953663 4953279 ID=MS.gene26743.t1.exon8;Parent=MS.gene26743.t1
chr8.3 CDS 4953279 4953663 4953279 ID=cds.MS.gene26743.t1;Parent=MS.gene26743.t1
Gene Sequence

>MS.gene26743

ATGGTAACTGTTAGAGCTCTTCCTACAATGGTTGATTTTCAGAAGCTTGATTCGGATTCGAATAATGGTAACTGTTGTTTTTGTTTCATGTTTTTAATGCATTACTTGTTTCTTCCGGAAGTGTTAAAGTTTTGATATTTGTTGTGTAGGACCCACTCCTTCGATTGAGGAGAAACTTGTTAAATCTCTTCCTCGTTTTCTTCGATGTCTAGTTAAGGACGATTTTCCTCGGGACCAGGTTTGTTTGAAACTTGTCTATTTTATCTCTAGTTTGAAATTTTGTTGTTTTGATTGGTTTTTTTGTGTGACTTTGTTTGTTTAGTATTACGCTGCTTTTGCACTCACAAACATAACAGCTGGAACTTCTGAGAACACTAAGTTGGTAATTGATCATGGGGCTGTACCAATGCTTGTCAACCTACTTAGTTCACCTAATGATGCTGTTCGAAACCAGGTATATTTATTTATTATACTTATATGTTATGTAGTAGCAGTAAAAGGTTTTTTATTTTTATTTTTTTGTTGCTGAACACTAAAACTCTGAAATTGTATTGTAGGCTGTGTTGGCATTGGGAAACATCGCCGCTGATTCCCCTAGTTGCCGTGATCTCGTTCTCAGTCATGGTGCCCTGATCCCGCTGTTATCCCACTTGAATGAGCACACAGATAATCTTTGTATGCTGAGAAATGCCACGTGGGCCCTGTCGAGCTTTTGCCTGGGCAAGCCACTACCCTTATTTGAGCAGGTACTTGTTATTTTTTGTTAAATTAAAACTAAACCTGCAAGAACACCTTTATATGTGTATTAATACTAGATTTTTGTGGACAGGTGAGGCCAGCGCTTCCAGCTCTCCAGCGTTTGCTTTTATCCAATGATGCAGAAGTCCTCGCAGATGCATGCTGGGCACTTTTCTCTCTTTCTGCTCGCACAATTGACAAAATCCAAGTGGTGATCGAGGCAGGTGTATGTGGCAGACTTGTGCAGCTCCTTCTGTAAGTACCTATTCTTCTATCCCTGCTCAAAACCATATTCTTTTGCTATTCTTGATTATTTTGGCTCTAATTGTATCTGCATCTTTTGAAGGCACCCATCTCCTTCTGTGCTGCTTCCTGCACTTCGCACGGTGGGAAATATTGTAACTGGAGATGATATGCAGACTCAGGTAATAATAAGTTGCTTATTCCAAATTCAATTTAACTGCTATTGGGTAAAGTACTGAATTCCTGCTGTGTTAGTTATTTTGGAAATCAAATTAAAATTTTAATTAAATATTATAACCTGAAATTATTCATAGGTGAGTTTTTCAAGTAAGTATGCGGTTGTTGAAAATTGATTGGCAATCTTTAGAAATATTAGCCTAGGGATCAATTTTGTTTTTTGAGGGGGATAAAGTTTAGTCATGCTTGCTAGCCATTGCTGGTGATTCACTGCTATTTATTACCATCAATCTAGTCTCTTAAGCCTAGGAATCAATTTTGTTTTTTGAGGGGGTTTGGGAATTTTATCTTAGGGATAAAGTTTAGTCATACTTGCTAGCCATTGCTGGTGATTCACTGCTATTATTTATTTTATTACCCTCAATCTAGTCTCTTCTCACCCCTTGTATAAGTATCATGTCATCTCATATGTCACCTGTGAGAATTACCTGATTTGGTGGTGCTCTTTTTGTCAGGTTGTTATCAATCATGGTTCACTCCAATGCCTTTTGAGCCTGTTGACCCATGATCACAGCAAAAATATTAAGCAAGAAGCTTGCAGGACTGTATCAAACATTACAGCTGGTAACGGAGAGCAGATACAGGTAAGCAAATAAATCCCATCTTTTTTATACTCAAATGACATCAAATATCATGGTTAATAAAGCGCAGTGAACTCTACCTTTTATTTATGTACGATGCAGGCTGTTATTGAAGCTGGTCTGATTGCTCCTCTGGTCAATCTTCTTCAAAATGCTGAATTTGACATTCAAAAAGAAGCTGGATGGGCTCTCTCTAATGCTGCATCTGGTGGTACCCACGCACAAATCAAGTACGTGAAGTCGTTTTTAATTGTTATTTTCTTGCCCTGCTTCGTGCTGCCAACATTGAAAATTTACGTATTAACTTACCAAATATTGTTGTTATTACAAGGTACTTGGCGAGCCAGGGTTGCATTAAGCCTCTGTGTGATTTACTTGTTTGCCCTGATTCAAGATTTGTCGCTGACTGTTTAGAAGGTCTTGAGAATTTTCTGAAGGTTGGAGAAGCAGAGAAAAACTTTGGTAACACGGGAGATGTCAACTTGTATGCTCAGATGATAGATATTAACGAGGTATTGGAAAAGATTGAAAACTTGCGGAGTCACGACAACAGTGAAATTTATGAGAAGGCTGTTAAAATTCTCAAGACATATTGGTTTGAAGATGAAGATGAAGATGAGACACTACCTCCAGGCAATGGTTCTCAACCTGGTTTCAACTATGGAGGCAGTGACATTCAGGCCCCACCAGACAGATTCAATTTCAGCAGAATGTGA

Protein sequence

>MS.gene26743.t1

MVTVRALPTMVDFQKLDSDSNNGPTPSIEEKLVKSLPRFLRCLVKDDFPRDQAVLALGNIAADSPSCRDLVLSHGALIPLLSHLNEHTDNLCMLRNATWALSSFCLGKPLPLFEQVRPALPALQRLLLSNDAEVLADACWALFSLSARTIDKIQVVIEAGVCGRLVQLLLHPSPSVLLPALRTVGNIVTGDDMQTQVVINHGSLQCLLSLLTHDHSKNIKQEACRTVSNITAGNGEQIQAVIEAGLIAPLVNLLQNAEFDIQKEAGWALSNAASGGTHAQIKYLASQGCIKPLCDLLVCPDSRFVADCLEGLENFLKVGEAEKNFGNTGDVNLYAQMIDINEVLEKIENLRSHDNSEIYEKAVKILKTYWFEDEDEDETLPPGNGSQPGFNYGGSDIQAPPDRFNFSRM