AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26918

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26918.t1 MTR_1g021740 98.563 487 7 0 1 487 1 487 0.0 952
MS.gene26918.t1 MTR_8g069470 56.984 451 194 0 36 486 51 501 0.0 526
MS.gene26918.t1 MTR_5g033100 54.244 483 212 2 8 481 20 502 1.78e-178 511
MS.gene26918.t1 MTR_1g100180 50.000 496 238 4 1 487 1 495 9.53e-168 483
MS.gene26918.t1 MTR_5g032720 49.669 453 227 1 28 479 29 481 4.72e-157 455
MS.gene26918.t1 MTR_3g099700 50.862 464 227 1 20 482 31 494 8.41e-156 452
MS.gene26918.t1 MTR_2g088400 48.980 490 234 4 4 479 10 497 4.12e-155 451
MS.gene26918.t1 MTR_2g022980 48.148 486 243 3 3 479 8 493 1.93e-152 444
MS.gene26918.t1 MTR_4g048000 47.106 501 243 5 3 481 11 511 5.35e-150 438
MS.gene26918.t1 MTR_5g032750 48.950 476 233 3 6 480 16 482 2.14e-149 436
MS.gene26918.t1 MTR_7g087410 47.289 461 243 0 27 487 23 483 1.50e-148 434
MS.gene26918.t1 MTR_7g087400 46.739 460 242 2 21 480 18 474 4.95e-146 427
MS.gene26918.t1 MTR_3g099720 44.325 467 260 0 12 478 18 484 7.42e-142 416
MS.gene26918.t1 MTR_2g088400 48.444 450 216 4 4 439 10 457 3.86e-138 406
MS.gene26918.t1 MTR_6g027200 44.262 488 265 4 1 487 7 488 1.16e-136 404
MS.gene26918.t1 MTR_6g027190 48.253 458 235 2 24 480 13 469 1.42e-136 403
MS.gene26918.t1 MTR_7g087410 48.985 394 201 0 94 487 1 394 5.37e-132 388
MS.gene26918.t1 MTR_6g047610 42.138 477 272 3 3 479 1 473 1.44e-131 390
MS.gene26918.t1 MTR_7g087370 44.880 459 221 3 21 479 18 444 2.57e-129 383
MS.gene26918.t1 MTR_6g047640 42.558 477 271 2 3 479 1 474 3.15e-129 384
MS.gene26918.t1 MTR_6g047590 42.558 477 270 3 3 479 1 473 1.84e-125 374
MS.gene26918.t1 MTR_7g087430 46.891 386 205 0 94 479 1 386 1.69e-124 369
MS.gene26918.t1 MTR_5g090290 45.416 469 252 2 14 478 22 490 3.84e-123 371
MS.gene26918.t1 MTR_6g047640 40.461 477 262 3 3 479 1 455 5.87e-122 365
MS.gene26918.t1 MTR_8g063590 43.584 452 253 2 36 485 54 505 1.77e-113 344
MS.gene26918.t1 MTR_1g108810 39.186 467 274 5 12 470 6 470 1.79e-102 315
MS.gene26918.t1 MTR_6g081410 38.312 462 278 4 20 478 14 471 6.09e-100 308
MS.gene26918.t1 MTR_6g081780 39.440 464 266 6 20 476 14 469 1.74e-98 305
MS.gene26918.t1 MTR_5g087930 43.500 400 204 4 61 459 52 430 5.32e-96 298
MS.gene26918.t1 MTR_7g082810 38.235 442 272 1 36 476 21 462 3.90e-93 291
MS.gene26918.t1 MTR_6g066380 36.952 479 291 4 1 476 1 471 5.26e-93 291
MS.gene26918.t1 MTR_6g081300 37.862 449 272 3 36 480 11 456 1.21e-90 284
MS.gene26918.t1 MTR_6g081810 35.504 476 274 5 1 476 1 443 5.47e-87 274
MS.gene26918.t1 MTR_6g081390 38.031 447 268 5 37 478 15 457 1.64e-86 273
MS.gene26918.t1 MTR_1g108840 35.404 483 296 7 3 476 8 483 2.38e-85 271
MS.gene26918.t1 MTR_6g081240 37.444 446 273 5 27 468 1 444 4.98e-85 269
MS.gene26918.t1 MTR_8g106670 37.104 442 276 2 38 478 16 456 4.73e-84 268
MS.gene26918.t1 MTR_6g081400 35.938 448 276 5 37 478 18 460 2.91e-82 263
MS.gene26918.t1 MTR_6g081310 38.427 445 255 6 48 476 9 450 3.27e-81 260
MS.gene26918.t1 MTR_6g004220 34.802 454 292 3 36 487 24 475 8.16e-81 259
MS.gene26918.t1 MTR_1g108990 36.425 442 280 1 36 476 26 467 7.25e-80 256
MS.gene26918.t1 MTR_6g004220 34.943 435 281 2 36 468 31 465 1.44e-77 251
MS.gene26918.t1 MTR_2g078930 33.898 472 298 5 4 467 11 476 4.71e-76 247
MS.gene26918.t1 MTR_1g109060 34.842 442 287 1 36 476 25 466 1.23e-74 243
MS.gene26918.t1 MTR_2g078960 34.873 433 281 1 36 467 34 466 2.64e-73 239
MS.gene26918.t1 MTR_5g090280 37.530 413 223 4 94 478 1 406 6.24e-73 237
MS.gene26918.t1 MTR_2g079020 33.641 434 285 2 36 467 38 470 1.28e-72 238
MS.gene26918.t1 MTR_2g078970 35.335 433 279 1 36 467 32 464 1.40e-72 238
MS.gene26918.t1 MTR_1g109060 34.793 434 282 1 36 468 25 458 4.26e-72 236
MS.gene26918.t1 MTR_7g082800 34.197 386 253 1 94 478 1 386 1.06e-69 228
MS.gene26918.t1 MTR_5g010830 30.493 446 297 5 36 474 66 505 3.28e-61 209
MS.gene26918.t1 MTR_3g111020 28.814 472 327 4 12 477 26 494 1.61e-60 207
MS.gene26918.t1 MTR_0039s0080 28.571 490 334 5 1 482 1 482 2.96e-59 204
MS.gene26918.t1 MTR_1g101500 29.325 474 322 5 6 474 39 504 7.11e-59 203
MS.gene26918.t1 MTR_5g067460 28.125 448 311 4 36 477 56 498 4.79e-57 199
MS.gene26918.t1 MTR_6g004220 31.880 367 248 2 36 400 31 397 6.11e-50 177
MS.gene26918.t1 MTR_6g088805 26.237 465 334 4 10 473 7 463 3.00e-47 171
MS.gene26918.t1 MTR_2g078990 34.708 291 189 1 178 467 3 293 1.57e-46 164
MS.gene26918.t1 MTR_6g043810 27.494 451 313 5 36 474 24 472 2.84e-46 168
MS.gene26918.t1 MTR_6g043810 27.494 451 313 5 36 474 34 482 3.43e-46 168
MS.gene26918.t1 MTR_5g011540 27.880 434 311 1 42 473 50 483 1.13e-42 158
MS.gene26918.t1 MTR_8g102430 26.651 439 301 3 36 473 24 442 2.24e-42 156
MS.gene26918.t1 MTR_4g027920 25.652 460 319 5 26 472 147 596 1.40e-41 157
MS.gene26918.t1 MTR_6g004220 32.374 278 186 2 36 311 31 308 8.33e-38 141
MS.gene26918.t1 MTR_2g435930 23.109 476 349 3 18 476 2 477 1.60e-33 133
MS.gene26918.t1 MTR_2g079030 36.410 195 124 0 273 467 319 513 3.96e-32 129
MS.gene26918.t1 MTR_4g131290 50.820 61 30 0 107 167 13 73 3.90e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26918.t1 AT1G47530 67.925 477 150 2 6 482 8 481 0.0 657
MS.gene26918.t1 AT1G47530 71.465 389 111 0 94 482 1 389 0.0 572
MS.gene26918.t1 AT3G26590 54.725 455 206 0 30 484 39 493 0.0 516
MS.gene26918.t1 AT5G38030 53.347 478 217 2 13 484 16 493 2.10e-178 510
MS.gene26918.t1 AT1G23300 56.098 451 198 0 30 480 38 488 3.54e-177 507
MS.gene26918.t1 AT1G12950 54.405 454 207 0 28 481 59 512 6.20e-176 504
MS.gene26918.t1 AT4G00350 55.157 446 199 1 35 480 87 531 1.01e-171 494
MS.gene26918.t1 AT4G25640 51.572 477 222 3 14 482 4 479 6.96e-158 457
MS.gene26918.t1 AT4G25640 51.572 477 222 3 14 482 4 479 4.40e-157 456
MS.gene26918.t1 AT3G26590 53.708 391 181 0 94 484 1 391 6.07e-150 434
MS.gene26918.t1 AT3G21690 48.936 470 237 2 13 479 27 496 9.03e-150 437
MS.gene26918.t1 AT5G65380 48.712 466 238 1 20 484 21 486 1.80e-149 436
MS.gene26918.t1 AT1G61890 45.756 483 256 3 3 479 9 491 1.72e-145 426
MS.gene26918.t1 AT1G11670 47.661 449 234 1 35 482 49 497 1.32e-143 421
MS.gene26918.t1 AT4G25640 51.620 432 200 3 14 437 4 434 1.95e-142 417
MS.gene26918.t1 AT1G61890 45.781 474 251 3 3 470 9 482 2.68e-141 415
MS.gene26918.t1 AT1G33100 46.405 459 246 0 21 479 18 476 4.14e-141 414
MS.gene26918.t1 AT5G44050 47.379 477 238 5 6 479 18 484 1.25e-140 413
MS.gene26918.t1 AT1G33110 46.070 458 247 0 22 479 22 479 1.68e-140 413
MS.gene26918.t1 AT1G33090 46.288 458 246 0 22 479 22 479 4.25e-137 404
MS.gene26918.t1 AT5G10420 47.761 469 238 5 15 479 17 482 7.40e-137 404
MS.gene26918.t1 AT1G33080 44.978 458 252 0 22 479 22 479 1.27e-135 400
MS.gene26918.t1 AT4G21910 43.737 487 263 5 3 479 13 498 1.11e-133 396
MS.gene26918.t1 AT4G21910 43.737 487 263 5 3 479 13 498 1.11e-133 396
MS.gene26918.t1 AT4G21910 44.685 461 249 3 24 479 41 500 3.72e-133 395
MS.gene26918.t1 AT4G21910 44.685 461 249 3 24 479 41 500 3.72e-133 395
MS.gene26918.t1 AT1G33080 45.133 452 248 0 22 473 22 473 7.07e-133 394
MS.gene26918.t1 AT3G59030 47.404 443 232 1 36 477 51 493 8.97e-133 394
MS.gene26918.t1 AT4G21903 44.444 432 238 2 57 487 74 504 1.04e-128 383
MS.gene26918.t1 AT1G61890 44.695 443 239 3 3 439 9 451 6.20e-126 375
MS.gene26918.t1 AT4G21903 44.917 423 231 2 57 478 74 495 1.51e-125 376
MS.gene26918.t1 AT4G21903 45.570 395 214 1 94 487 1 395 5.04e-123 365
MS.gene26918.t1 AT5G17700 39.651 459 277 0 21 479 19 477 5.49e-116 350
MS.gene26918.t1 AT5G17700 39.651 459 277 0 21 479 19 477 5.49e-116 350
MS.gene26918.t1 AT3G03620 39.783 460 277 0 20 479 21 480 7.77e-115 348
MS.gene26918.t1 AT3G03620 39.783 460 277 0 20 479 21 480 7.77e-115 348
MS.gene26918.t1 AT1G33110 46.335 382 205 0 22 403 22 403 4.03e-111 335
MS.gene26918.t1 AT3G59030 46.175 366 196 1 36 400 51 416 4.34e-100 307
MS.gene26918.t1 AT1G73700 40.685 467 266 6 14 476 6 465 2.71e-97 301
MS.gene26918.t1 AT5G52450 41.176 442 258 2 38 478 29 469 1.03e-96 300
MS.gene26918.t1 AT2G34360 38.829 461 264 8 22 477 16 463 3.12e-88 278
MS.gene26918.t1 AT1G71140 36.771 446 273 3 36 476 26 467 3.37e-86 273
MS.gene26918.t1 AT5G17700 37.859 383 238 0 21 403 19 401 6.12e-85 268
MS.gene26918.t1 AT1G66760 32.568 479 306 5 2 476 4 469 4.71e-83 265
MS.gene26918.t1 AT3G23560 34.607 471 299 6 2 467 5 471 1.04e-81 261
MS.gene26918.t1 AT1G66760 32.627 472 299 6 2 468 4 461 1.20e-80 258
MS.gene26918.t1 AT1G66780 35.129 427 272 2 53 476 52 476 1.28e-79 256
MS.gene26918.t1 AT2G04080 32.823 457 300 2 32 487 23 473 2.37e-79 255
MS.gene26918.t1 AT1G15160 35.794 447 276 4 36 476 31 472 3.07e-79 255
MS.gene26918.t1 AT1G15150 35.281 445 281 4 36 476 31 472 3.47e-78 253
MS.gene26918.t1 AT2G04040 32.649 487 312 5 3 487 1 473 5.71e-78 251
MS.gene26918.t1 AT1G64820 33.781 447 281 5 38 476 31 470 9.56e-78 252
MS.gene26918.t1 AT2G04070 33.613 476 306 3 16 487 4 473 4.89e-77 249
MS.gene26918.t1 AT2G34360 35.652 460 238 6 22 477 16 421 3.27e-76 246
MS.gene26918.t1 AT2G04050 33.548 465 305 2 16 476 4 468 7.83e-76 246
MS.gene26918.t1 AT2G04080 32.648 438 294 1 32 468 23 460 2.01e-75 245
MS.gene26918.t1 AT1G15170 35.011 457 280 7 35 482 33 481 6.49e-75 244
MS.gene26918.t1 AT3G23550 33.623 461 299 4 14 467 3 463 1.18e-74 243
MS.gene26918.t1 AT2G04100 32.127 442 299 1 36 476 30 471 1.21e-70 233
MS.gene26918.t1 AT1G15180 35.088 456 279 7 36 482 35 482 1.33e-69 230
MS.gene26918.t1 AT2G04090 31.222 442 303 1 36 476 30 471 2.33e-69 229
MS.gene26918.t1 AT2G04100 31.881 436 296 1 36 470 30 465 4.88e-68 226
MS.gene26918.t1 AT1G15150 36.499 337 211 2 142 476 21 356 2.72e-65 215
MS.gene26918.t1 AT1G15170 36.311 347 210 4 142 482 21 362 8.40e-64 211
MS.gene26918.t1 AT1G58340 29.933 451 307 3 36 481 58 504 1.64e-60 207
MS.gene26918.t1 AT3G23560 32.921 404 262 6 2 400 5 404 1.72e-59 201
MS.gene26918.t1 AT1G66760 32.931 331 215 3 142 468 6 333 2.81e-58 196
MS.gene26918.t1 AT5G19700 26.907 472 332 3 16 474 4 475 1.11e-54 191
MS.gene26918.t1 AT1G66760 29.950 404 264 6 2 400 4 393 2.97e-53 184
MS.gene26918.t1 AT4G29140 26.609 466 341 1 10 474 30 495 3.71e-51 182
MS.gene26918.t1 AT2G38510 26.222 450 320 5 32 474 2 446 9.43e-47 169
MS.gene26918.t1 AT1G71870 25.103 486 336 6 8 472 1 479 1.34e-45 166
MS.gene26918.t1 AT4G23030 29.122 467 318 6 20 478 15 476 8.20e-45 164
MS.gene26918.t1 AT5G52050 25.942 451 315 2 36 473 35 479 1.40e-41 155
MS.gene26918.t1 AT5G49130 24.330 485 341 5 18 478 1 483 1.88e-39 149
MS.gene26918.t1 AT1G15180 35.094 265 161 4 142 400 21 280 1.45e-38 145
MS.gene26918.t1 AT4G22790 26.106 452 319 7 29 473 27 470 2.87e-35 137
MS.gene26918.t1 AT2G04066 38.843 121 74 0 356 476 43 163 2.27e-23 97.1

Find 115 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAATATTGAAACTTAAT+TGG 0.102187 1.3:+3291615 MS.gene26918:CDS
GAACTTGGAGCAGGTGATTT+TGG 0.171137 1.3:+3292442 MS.gene26918:CDS
TGATTTGTTATCAGGGTATT+TGG 0.215741 1.3:+3293065 MS.gene26918:intron
TGGTTTCGCCTTTGGTTTCT+TGG 0.217826 1.3:+3289875 MS.gene26918:CDS
TTGGGCTTCACATTTGGTTT+TGG 0.259862 1.3:+3292855 MS.gene26918:CDS
TCTAATATTGAAACTTAATT+GGG 0.293407 1.3:+3291616 MS.gene26918:CDS
TTAATGAAGTAACAATTATA+AGG 0.295058 1.3:-3293126 None:intergenic
GTTGAAAATTCTGTTATTGC+TGG 0.307891 1.3:+3289855 MS.gene26918:CDS
GTTATTGCTGGTTTCGCCTT+TGG 0.310201 1.3:+3289867 MS.gene26918:CDS
CATTGGATGCTGTATCTATT+TGG 0.321661 1.3:+3291972 MS.gene26918:CDS
CAGCAAGTTTAGTTGTTTCC+TGG 0.333817 1.3:-3292591 None:intergenic
CTTGTAGCTTACATAAATCT+TGG 0.340357 1.3:+3292795 MS.gene26918:CDS
TAGCTTCAGCTGTTATGTTA+TGG 0.343938 1.3:+3291792 MS.gene26918:CDS
CAGAAAGCCGTGTGAGGAAG+TGG 0.348907 1.3:+3293258 MS.gene26918:CDS
ATGATATTGGTGGTGATAAC+AGG 0.354451 1.3:+3291926 MS.gene26918:CDS
GTGATGTCAGCTTGGAGTTT+TGG 0.356839 1.3:+3291897 MS.gene26918:intron
ATATTGTTGGGCTTCACATT+TGG 0.357452 1.3:+3292849 MS.gene26918:CDS
GATAAAGAAGTTAAGATTGT+TGG 0.357514 1.3:-3289759 None:intergenic
CTTGGATCCTACTATGTTGT+TGG 0.361711 1.3:+3292813 MS.gene26918:CDS
TTACCAGCTGGGATATTGTT+GGG 0.365810 1.3:+3292837 MS.gene26918:CDS
AGTAACAATTATAAGGATTA+TGG 0.368933 1.3:-3293119 None:intergenic
GATTGCAGTATGAACATAAA+TGG 0.371621 1.3:+3292232 MS.gene26918:intron
GGAGTTGCCCAAATATAAAA+AGG 0.371768 1.3:-3290273 None:intergenic
TTGTTACTTCATTAACCAAC+TGG 0.380634 1.3:+3293134 MS.gene26918:CDS
AAACTTAATTGGGGCTTAGT+TGG 0.382505 1.3:+3291626 MS.gene26918:CDS
GGAAAGTCCTGGTGATGTTA+TGG 0.383348 1.3:+3291549 MS.gene26918:CDS
CTGAAAATTGTTCACAAAGT+TGG 0.384942 1.3:+3289702 MS.gene26918:CDS
GGTGGTGATAACAGGGCATT+TGG 0.388031 1.3:+3291934 MS.gene26918:CDS
ACTCCAAGCACCATCTGATT+TGG 0.390160 1.3:-3291717 None:intergenic
TGTTATCAGGGTATTTGGTC+AGG 0.396483 1.3:+3293070 MS.gene26918:intron
GGTATTTGGTCAGGTCTGAT+TGG 0.397825 1.3:+3293079 MS.gene26918:CDS
ATTACCAGCTGGGATATTGT+TGG 0.407188 1.3:+3292836 MS.gene26918:CDS
GCATTCACTTCTACGTTTGT+TGG 0.412634 1.3:+3289798 MS.gene26918:CDS
TGGTAGGCACATTTGCTTTG+TGG 0.414802 1.3:+3291462 MS.gene26918:intron
AGGGCATTTGGCAAACCCTT+TGG 0.415152 1.3:+3291946 MS.gene26918:CDS
AAAGCATATGCAAATATTTG+TGG 0.422937 1.3:-3291491 None:intergenic
TGGTTGGCAACAGTTGGGTA+TGG 0.428241 1.3:+3290134 MS.gene26918:intron
ACACTATGTGGGCAAGCATT+TGG 0.433648 1.3:+3290171 MS.gene26918:CDS
TGGATTATCTTGGTGGCTAC+AGG 0.437574 1.3:+3290237 MS.gene26918:CDS
TTAGGTGTTGCTATTGGAGC+TGG 0.443556 1.3:+3292762 MS.gene26918:intron
GGCAAACCCTTTGGTGCCAT+TGG 0.443751 1.3:+3291955 MS.gene26918:CDS
TAGGGTTTAACGTTGCAATA+AGG 0.443944 1.3:+3292275 MS.gene26918:CDS
TGTTACATGTACCTCTTAGT+TGG 0.444285 1.3:+3291591 MS.gene26918:CDS
GAATTTACATGCAAAGATCA+TGG 0.447765 1.3:+3290217 MS.gene26918:CDS
AGCAAGTTTAGTTGTTTCCT+GGG 0.447936 1.3:-3292590 None:intergenic
TATGTTGTTGGATTACCAGC+TGG 0.453772 1.3:+3292825 MS.gene26918:CDS
TGCAAAGTTCTCAGTGATAG+TGG 0.455040 1.3:+3292468 MS.gene26918:CDS
GCAGTATGAACATAAATGGT+TGG 0.464973 1.3:+3292236 MS.gene26918:intron
CAGTATGAACATAAATGGTT+GGG 0.468025 1.3:+3292237 MS.gene26918:intron
TCATGGTGGTTGATTGTCAT+TGG 0.473305 1.3:+3291671 MS.gene26918:CDS
GCAAAGATCATGGATTATCT+TGG 0.476538 1.3:+3290227 MS.gene26918:CDS
AGCCTACAACCAGTCTTGTC+TGG 0.477429 1.3:+3292643 MS.gene26918:CDS
TGGGATATGATGATCGCGCT+AGG 0.486272 1.3:+3292256 MS.gene26918:CDS
TGGTAATCCAACAACATAGT+AGG 0.486946 1.3:-3292820 None:intergenic
AGAAGTTAAGATTGTTGGAC+CGG 0.486994 1.3:-3289754 None:intergenic
AATATTAGAAGCCAACTAAG+AGG 0.488197 1.3:-3291602 None:intergenic
CAATTATTCTCAACACATCA+TGG 0.498659 1.3:+3291654 MS.gene26918:CDS
ATTTGGTCAGGTCTGATTGG+AGG 0.508178 1.3:+3293082 MS.gene26918:CDS
TCACCAAATCAGATGGTGCT+TGG 0.510768 1.3:+3291714 MS.gene26918:CDS
TCTTTATCTCAGTACTCGCT+TGG 0.519020 1.3:+3289774 MS.gene26918:CDS
GTGATGTTATGGATATCATT+AGG 0.521877 1.3:+3291560 MS.gene26918:CDS
GGTTGGCAACAGTTGGGTAT+GGG 0.521926 1.3:+3290135 MS.gene26918:intron
GTTGGGTATGGGAAGTGCAT+TGG 0.523324 1.3:+3290146 MS.gene26918:intron
AGTTGTTAGTACTATGATCA+TGG 0.530879 1.3:-3292524 None:intergenic
GATGAGATCGCAGAAGCTGC+TGG 0.531826 1.3:+3290321 MS.gene26918:CDS
TTCCTCCCCACTTCCTCACA+CGG 0.534562 1.3:-3293265 None:intergenic
TGCTGGTCATATAAGAATGA+TGG 0.538828 1.3:+3290194 MS.gene26918:CDS
TAGCTTGAAGTGAACAATTG+AGG 0.540499 1.3:-3292559 None:intergenic
GAGTGGAGTCGAAGAAGCTA+TGG 0.541517 1.3:+3289724 MS.gene26918:CDS
TTCAAGCTATGAGGTTGCCC+AGG 0.542260 1.3:+3292573 MS.gene26918:CDS
ACAGCATCCAATGGCACCAA+AGG 0.544225 1.3:-3291962 None:intergenic
AACCAGACAAGACTGGTTGT+AGG 0.545104 1.3:-3292645 None:intergenic
ATTGTTCACTTCAAGCTATG+AGG 0.547129 1.3:+3292564 MS.gene26918:CDS
CAAGATCGAGCTCGTTAACA+TGG 0.548496 1.3:-3289821 None:intergenic
TCTCTCACATCAATATCCAT+TGG 0.549511 1.3:+3292493 MS.gene26918:CDS
TGTGACTAACCAGACAAGAC+TGG 0.551439 1.3:-3292652 None:intergenic
GAAAGCCGTGTGAGGAAGTG+GGG 0.552917 1.3:+3293260 MS.gene26918:CDS
ACTCCCCTCTTGAAGCTCGT+TGG 0.555491 1.3:+3290291 MS.gene26918:CDS
AGAAAGCCGTGTGAGGAAGT+GGG 0.557799 1.3:+3293259 MS.gene26918:CDS
AAGATCATGGATTATCTTGG+TGG 0.557828 1.3:+3290230 MS.gene26918:CDS
GTATCAAATGAACTTGGAGC+AGG 0.561306 1.3:+3292433 MS.gene26918:CDS
AAGCCCAACAATATCCCAGC+TGG 0.562621 1.3:-3292840 None:intergenic
AATTGTTCACAAAGTTGGAG+TGG 0.564145 1.3:+3289707 MS.gene26918:CDS
GTGCTTGGAGTGGATTCTCA+TGG 0.564381 1.3:+3291729 MS.gene26918:CDS
ATGTTGTTGGATTACCAGCT+GGG 0.564636 1.3:+3292826 MS.gene26918:CDS
GTGAGAGTATCAAATGAACT+TGG 0.567071 1.3:+3292427 MS.gene26918:CDS
TTGACATTGTTATCTAGTAG+AGG 0.570811 1.3:-3289639 None:intergenic
CTAATATTGAAACTTAATTG+GGG 0.574308 1.3:+3291617 MS.gene26918:CDS
ACAAGCACAAAGGAAAGTCC+TGG 0.574888 1.3:+3291538 MS.gene26918:CDS
AAATCAGATGGTGCTTGGAG+TGG 0.576701 1.3:+3291719 MS.gene26918:CDS
GGGATATGATGATCGCGCTA+GGG 0.580089 1.3:+3292257 MS.gene26918:CDS
TGTGGGCAAGCATTTGGTGC+TGG 0.581549 1.3:+3290177 MS.gene26918:CDS
CAGCATCCAATGGCACCAAA+GGG 0.581611 1.3:-3291961 None:intergenic
TTGGTACTTGATGATATTGG+TGG 0.583882 1.3:+3291916 MS.gene26918:CDS
GATCATGGCAACAACACCAA+TGG 0.586370 1.3:-3292509 None:intergenic
AGTGCATTGGAGACACTATG+TGG 0.586848 1.3:+3290159 MS.gene26918:CDS
TCCTAGTGTTGTTCATCATG+AGG 0.592021 1.3:+3289668 MS.gene26918:CDS
AAGAAGCTATGGAAAATAGC+CGG 0.605436 1.3:+3289735 MS.gene26918:CDS
CTGTCCAACGAGCTTCAAGA+GGG 0.606132 1.3:-3290295 None:intergenic
GCTGGTCATATAAGAATGAT+GGG 0.606977 1.3:+3290195 MS.gene26918:CDS
TCCTCATGATGAACAACACT+AGG 0.609928 1.3:-3289669 None:intergenic
TAGAGGACTGTCGATAGCCA+TGG 0.613803 1.3:-3289622 None:intergenic
ATGATATCCATAACATCACC+AGG 0.617590 1.3:-3291556 None:intergenic
CAAATAGATACAGCATCCAA+TGG 0.632386 1.3:-3291971 None:intergenic
TCTGTCCAACGAGCTTCAAG+AGG 0.635922 1.3:-3290296 None:intergenic
AAAAGTTCTTACAAGCACAA+AGG 0.640238 1.3:+3291528 MS.gene26918:CDS
TTTACATACCAAGAAACCAA+AGG 0.654334 1.3:-3289883 None:intergenic
ATGAAGCAGAAAGCCGTGTG+AGG 0.654673 1.3:+3293252 MS.gene26918:CDS
TCATGATGAACAACACTAGG+AGG 0.658187 1.3:-3289666 None:intergenic
GTGTTGCTATTGGAGCTGGT+TGG 0.658329 1.3:+3292766 MS.gene26918:CDS
GTGCATTGGAGACACTATGT+GGG 0.665609 1.3:+3290160 MS.gene26918:CDS
TGATATTGGTGGTGATAACA+GGG 0.675304 1.3:+3291927 MS.gene26918:CDS
AGCCGTGTGAGGAAGTGGGG+AGG 0.676849 1.3:+3293263 MS.gene26918:CDS
TGTCCAACGAGCTTCAAGAG+GGG 0.697789 1.3:-3290294 None:intergenic
TTATTCTCAACACATCATGG+TGG 0.744685 1.3:+3291657 MS.gene26918:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATACATTTTTTTTTTTTTT+TGG - chr1.3:3290079-3290098 None:intergenic 10.0%
!!! TATAAAATTGTTTTTGTTTT+TGG + chr1.3:3290114-3290133 MS.gene26918:intron 10.0%
!!! TATATAGTATAATTTTTAGA+AGG + chr1.3:3292936-3292955 MS.gene26918:intron 10.0%
!! AATTAAATTCAAGAGAAATA+AGG - chr1.3:3292901-3292920 None:intergenic 15.0%
!! ATATTCCTATCATTTAAATT+TGG + chr1.3:3290363-3290382 MS.gene26918:intron 15.0%
!! ATTAAATTCAAGAGAAATAA+GGG - chr1.3:3292900-3292919 None:intergenic 15.0%
!! ATTTACAAGAGAAATATTTA+CGG - chr1.3:3290417-3290436 None:intergenic 15.0%
!! GAAAATTAATTTCATATCTT+TGG + chr1.3:3293216-3293235 MS.gene26918:intron 15.0%
!! TCTAATATTGAAACTTAATT+GGG + chr1.3:3291616-3291635 MS.gene26918:CDS 15.0%
!! TTAATGAAGTAACAATTATA+AGG - chr1.3:3293129-3293148 None:intergenic 15.0%
!! TTCTAATATTGAAACTTAAT+TGG + chr1.3:3291615-3291634 MS.gene26918:CDS 15.0%
!!! ATATTTATTGTTTGTTAATG+AGG + chr1.3:3292976-3292995 MS.gene26918:intron 15.0%
!!! ATTAATTTTCAACTAACAAT+AGG - chr1.3:3293206-3293225 None:intergenic 15.0%
!!! TATTTTATCAATTTTCCTTT+TGG + chr1.3:3291442-3291461 MS.gene26918:intron 15.0%
!!! TTTTATAAATCATAAACTTG+AGG - chr1.3:3290101-3290120 None:intergenic 15.0%
!! AGTAACAATTATAAGGATTA+TGG - chr1.3:3293122-3293141 None:intergenic 20.0%
!! AGTAAGTTAATTTAAGTAGT+TGG + chr1.3:3290719-3290738 MS.gene26918:intron 20.0%
!! AGTGTTATGTAATAATAAAG+CGG - chr1.3:3289921-3289940 None:intergenic 20.0%
!! AGTTTACATGTAAAAAACTT+CGG + chr1.3:3290962-3290981 MS.gene26918:intron 20.0%
!! CTAATATTGAAACTTAATTG+GGG + chr1.3:3291617-3291636 MS.gene26918:CDS 20.0%
!! TAACTTACTAACTATAATGA+TGG - chr1.3:3290708-3290727 None:intergenic 20.0%
!! TCAGCTTAATTAATATTTGA+TGG + chr1.3:3291844-3291863 MS.gene26918:intron 20.0%
!! TTAAATTCAAGAGAAATAAG+GGG - chr1.3:3292899-3292918 None:intergenic 20.0%
!! TTAGTCCAAATTTAAATGAT+AGG - chr1.3:3290371-3290390 None:intergenic 20.0%
!!! AAATGTCTATCACTTTTATT+TGG - chr1.3:3292045-3292064 None:intergenic 20.0%
!!! AAATTGTTTTTGTTTTTGGT+TGG + chr1.3:3290118-3290137 MS.gene26918:intron 20.0%
!!! ACACTTATTTTTGTTCTTTA+AGG + chr1.3:3289936-3289955 MS.gene26918:intron 20.0%
!!! GATATTTATTGATTCAATAG+TGG + chr1.3:3291302-3291321 MS.gene26918:intron 20.0%
!!! GTTGTTACCTTTTTATATTT+GGG + chr1.3:3290266-3290285 MS.gene26918:CDS 20.0%
!!! TAAAACTATGATAATGACTT+GGG + chr1.3:3291149-3291168 MS.gene26918:intron 20.0%
!!! TAAATTGTTCACTTTAAAGA+AGG - chr1.3:3292340-3292359 None:intergenic 20.0%
!!! TGTTGTTACCTTTTTATATT+TGG + chr1.3:3290265-3290284 MS.gene26918:CDS 20.0%
!!! TTGTTACTATTTAGTTTGAA+GGG + chr1.3:3290451-3290470 MS.gene26918:intron 20.0%
! AAAGCATATGCAAATATTTG+TGG - chr1.3:3291494-3291513 None:intergenic 25.0%
! AAAGTAGTATATTTACCCTT+TGG - chr1.3:3290914-3290933 None:intergenic 25.0%
! AAGAGAAATATTTACGGAAA+TGG - chr1.3:3290411-3290430 None:intergenic 25.0%
! GATAAAGAAGTTAAGATTGT+TGG - chr1.3:3289762-3289781 None:intergenic 25.0%
! GATCGTTCAATGTAAATTAA+CGG + chr1.3:3290584-3290603 MS.gene26918:intron 25.0%
! TTCAAAACTGAGGATTAATT+AGG + chr1.3:3292108-3292127 MS.gene26918:intron 25.0%
!! AAAACTATGATAATGACTTG+GGG + chr1.3:3291150-3291169 MS.gene26918:intron 25.0%
!! AAAGGGATAGTTAATTTGAA+GGG + chr1.3:3290653-3290672 MS.gene26918:intron 25.0%
!! CATTTAAAATTTCCTAGCAA+GGG - chr1.3:3291057-3291076 None:intergenic 25.0%
!! GTAAAACTATGATAATGACT+TGG + chr1.3:3291148-3291167 MS.gene26918:intron 25.0%
!! TAAAGGGATAGTTAATTTGA+AGG + chr1.3:3290652-3290671 MS.gene26918:intron 25.0%
!! TTATCAATTTTCCTTTTGGT+AGG + chr1.3:3291446-3291465 MS.gene26918:intron 25.0%
!! TTGCTAGGAAATTTTAAATG+CGG + chr1.3:3291057-3291076 MS.gene26918:intron 25.0%
!!! ATACCTATGATTTGTTATCA+GGG + chr1.3:3293058-3293077 MS.gene26918:intron 25.0%
!!! CCATTTTTCGCTAATTAAAA+GGG + chr1.3:3290848-3290867 MS.gene26918:intron 25.0%
!!! CTTGTTACTATTTAGTTTGA+AGG + chr1.3:3290450-3290469 MS.gene26918:intron 25.0%
!!! GCATTTGTTGTTACTATTTT+AGG + chr1.3:3292744-3292763 MS.gene26918:intron 25.0%
!!! GGTAAATATACTACTTTTGT+GGG + chr1.3:3290917-3290936 MS.gene26918:intron 25.0%
!!! TATACCTATGATTTGTTATC+AGG + chr1.3:3293057-3293076 MS.gene26918:intron 25.0%
!!! TCCATTTTTCGCTAATTAAA+AGG + chr1.3:3290847-3290866 MS.gene26918:intron 25.0%
AAAAGTTCTTACAAGCACAA+AGG + chr1.3:3291528-3291547 MS.gene26918:CDS 30.0%
AATATTAGAAGCCAACTAAG+AGG - chr1.3:3291605-3291624 None:intergenic 30.0%
ACAATGAGAATTTGGAGAAA+GGG - chr1.3:3292002-3292021 None:intergenic 30.0%
AGTTGTTAGTACTATGATCA+TGG - chr1.3:3292527-3292546 None:intergenic 30.0%
ATAAAAATTTGCAGCGTAAC+TGG + chr1.3:3290988-3291007 MS.gene26918:intron 30.0%
ATACCCTGATAACAAATCAT+AGG - chr1.3:3293064-3293083 None:intergenic 30.0%
ATTAACCAACTGGAAAAAAG+AGG + chr1.3:3293144-3293163 MS.gene26918:CDS 30.0%
CAATTATTCTCAACACATCA+TGG + chr1.3:3291654-3291673 MS.gene26918:CDS 30.0%
CAGTATGAACATAAATGGTT+GGG + chr1.3:3292237-3292256 MS.gene26918:intron 30.0%
CTGAAAATTGTTCACAAAGT+TGG + chr1.3:3289702-3289721 MS.gene26918:CDS 30.0%
CTTGTAGCTTACATAAATCT+TGG + chr1.3:3292795-3292814 MS.gene26918:CDS 30.0%
GAATTTACATGCAAAGATCA+TGG + chr1.3:3290217-3290236 MS.gene26918:CDS 30.0%
GATTGCAGTATGAACATAAA+TGG + chr1.3:3292232-3292251 MS.gene26918:intron 30.0%
GTGATGTTATGGATATCATT+AGG + chr1.3:3291560-3291579 MS.gene26918:CDS 30.0%
GTTGAAAATTCTGTTATTGC+TGG + chr1.3:3289855-3289874 MS.gene26918:CDS 30.0%
TCATTGTGCTATAGAAGTTA+TGG + chr1.3:3292015-3292034 MS.gene26918:intron 30.0%
TCTATAGCACAATGAGAATT+TGG - chr1.3:3292010-3292029 None:intergenic 30.0%
TTATGTTCATACTGCAATCA+TGG - chr1.3:3292231-3292250 None:intergenic 30.0%
TTCATATCTTTGGATTTCAC+AGG + chr1.3:3293226-3293245 MS.gene26918:intron 30.0%
TTGACATTGTTATCTAGTAG+AGG - chr1.3:3289642-3289661 None:intergenic 30.0%
TTTACATACCAAGAAACCAA+AGG - chr1.3:3289886-3289905 None:intergenic 30.0%
! ACTTTGTGAACAATTTTCAG+TGG - chr1.3:3289702-3289721 None:intergenic 30.0%
! ATTTTCATCACCAAATCAGA+TGG + chr1.3:3291707-3291726 MS.gene26918:CDS 30.0%
! CCATCTTTTCACTAGTTAAA+GGG + chr1.3:3290636-3290655 MS.gene26918:intron 30.0%
! GCATTTAAAATTTCCTAGCA+AGG - chr1.3:3291058-3291077 None:intergenic 30.0%
! GCTTGTAAGAACTTTTGAAT+TGG - chr1.3:3291524-3291543 None:intergenic 30.0%
! TAATGACCTGGTCAATTTTA+TGG - chr1.3:3291370-3291389 None:intergenic 30.0%
! TCCATCTTTTCACTAGTTAA+AGG + chr1.3:3290635-3290654 MS.gene26918:intron 30.0%
! TTGAAAAATGTTGAGTTGTG+TGG + chr1.3:3289984-3290003 MS.gene26918:intron 30.0%
! TTGTTACTTCATTAACCAAC+TGG + chr1.3:3293134-3293153 MS.gene26918:CDS 30.0%
!! CCCTTTTAATTAGCGAAAAA+TGG - chr1.3:3290851-3290870 None:intergenic 30.0%
!! GGGTAAATATACTACTTTTG+TGG + chr1.3:3290916-3290935 MS.gene26918:intron 30.0%
!! GTTTTGGTACTTGATGATAT+TGG + chr1.3:3291913-3291932 MS.gene26918:CDS 30.0%
!! TGATTTGTTATCAGGGTATT+TGG + chr1.3:3293065-3293084 MS.gene26918:intron 30.0%
!!! ACTATTTTAGGTGTTGCTAT+TGG + chr1.3:3292756-3292775 MS.gene26918:intron 30.0%
AAACTTAATTGGGGCTTAGT+TGG + chr1.3:3291626-3291645 MS.gene26918:CDS 35.0%
AAAGTCACAATGAAGACGTA+CGG - chr1.3:3290542-3290561 None:intergenic 35.0%
AACTGAGGATTAATTAGGCT+TGG + chr1.3:3292113-3292132 MS.gene26918:intron 35.0%
AAGAAGCTATGGAAAATAGC+CGG + chr1.3:3289735-3289754 MS.gene26918:CDS 35.0%
AATTGTTCACAAAGTTGGAG+TGG + chr1.3:3289707-3289726 MS.gene26918:CDS 35.0%
ACTGAGGATTAATTAGGCTT+GGG + chr1.3:3292114-3292133 MS.gene26918:intron 35.0%
AGAAGTTAAGATTGTTGGAC+CGG - chr1.3:3289757-3289776 None:intergenic 35.0%
ATATTGTTGGGCTTCACATT+TGG + chr1.3:3292849-3292868 MS.gene26918:CDS 35.0%
ATGATATCCATAACATCACC+AGG - chr1.3:3291559-3291578 None:intergenic 35.0%
ATTGTTCACTTCAAGCTATG+AGG + chr1.3:3292564-3292583 MS.gene26918:CDS 35.0%
CAAATAGATACAGCATCCAA+TGG - chr1.3:3291974-3291993 None:intergenic 35.0%
CACAATGAGAATTTGGAGAA+AGG - chr1.3:3292003-3292022 None:intergenic 35.0%
CATTGGATGCTGTATCTATT+TGG + chr1.3:3291972-3291991 MS.gene26918:CDS 35.0%
CCCTTTAACTAGTGAAAAGA+TGG - chr1.3:3290639-3290658 None:intergenic 35.0%
GCAGTATGAACATAAATGGT+TGG + chr1.3:3292236-3292255 MS.gene26918:intron 35.0%
GCTGGTCATATAAGAATGAT+GGG + chr1.3:3290195-3290214 MS.gene26918:CDS 35.0%
GGAGTTGCCCAAATATAAAA+AGG - chr1.3:3290276-3290295 None:intergenic 35.0%
GTGATTGCAATTCAAAACTG+AGG + chr1.3:3292098-3292117 MS.gene26918:intron 35.0%
TAAAAGGGTAGCTAGGATTA+GGG + chr1.3:3290863-3290882 MS.gene26918:intron 35.0%
TACATTGAACGATCGACATT+GGG - chr1.3:3290578-3290597 None:intergenic 35.0%
TAGCTTCAGCTGTTATGTTA+TGG + chr1.3:3291792-3291811 MS.gene26918:CDS 35.0%
TAGCTTGAAGTGAACAATTG+AGG - chr1.3:3292562-3292581 None:intergenic 35.0%
TAGGGTTTAACGTTGCAATA+AGG + chr1.3:3292275-3292294 MS.gene26918:CDS 35.0%
TCATCCAATTGCAGTATACA+AGG + chr1.3:3292155-3292174 MS.gene26918:intron 35.0%
TCTCTCACATCAATATCCAT+TGG + chr1.3:3292493-3292512 MS.gene26918:CDS 35.0%
TGCTGGTCATATAAGAATGA+TGG + chr1.3:3290194-3290213 MS.gene26918:CDS 35.0%
TGGTAATCCAACAACATAGT+AGG - chr1.3:3292823-3292842 None:intergenic 35.0%
TGTTACATGTACCTCTTAGT+TGG + chr1.3:3291591-3291610 MS.gene26918:CDS 35.0%
TTAAAAGGGTAGCTAGGATT+AGG + chr1.3:3290862-3290881 MS.gene26918:intron 35.0%
TTACATTGAACGATCGACAT+TGG - chr1.3:3290579-3290598 None:intergenic 35.0%
TTATTCTCAACACATCATGG+TGG + chr1.3:3291657-3291676 MS.gene26918:CDS 35.0%
TTCTCCTTGTATACTGCAAT+TGG - chr1.3:3292162-3292181 None:intergenic 35.0%
TTGAAAATGTGATGTCAGCT+TGG + chr1.3:3291889-3291908 MS.gene26918:intron 35.0%
! AAGATCATGGATTATCTTGG+TGG + chr1.3:3290230-3290249 MS.gene26918:CDS 35.0%
! AGCAAGTTTAGTTGTTTCCT+GGG - chr1.3:3292593-3292612 None:intergenic 35.0%
! GCAAAGATCATGGATTATCT+TGG + chr1.3:3290227-3290246 MS.gene26918:CDS 35.0%
! TAATGGCTTGTGTGTTTGTT+TGG + chr1.3:3291395-3291414 MS.gene26918:intron 35.0%
! TTGGTACTTGATGATATTGG+TGG + chr1.3:3291916-3291935 MS.gene26918:CDS 35.0%
!! ATGATATTGGTGGTGATAAC+AGG + chr1.3:3291926-3291945 MS.gene26918:CDS 35.0%
!! GTGAGAGTATCAAATGAACT+TGG + chr1.3:3292427-3292446 MS.gene26918:CDS 35.0%
!! TGATATTGGTGGTGATAACA+GGG + chr1.3:3291927-3291946 MS.gene26918:CDS 35.0%
!!! ACTAACCTCTTTTTTCCAGT+TGG - chr1.3:3293152-3293171 None:intergenic 35.0%
AAAATTTCCTAGCAAGGGCA+AGG - chr1.3:3291052-3291071 None:intergenic 40.0%
AAGCAAATGTGCCTACCAAA+AGG - chr1.3:3291460-3291479 None:intergenic 40.0%
AATTGTGTGTTAGAACGCAC+GGG + chr1.3:3290007-3290026 MS.gene26918:intron 40.0%
ACCAGGTCATTACACGATAA+TGG + chr1.3:3291378-3291397 MS.gene26918:intron 40.0%
ATGTTGTTGGATTACCAGCT+GGG + chr1.3:3292826-3292845 MS.gene26918:CDS 40.0%
ATTACCAGCTGGGATATTGT+TGG + chr1.3:3292836-3292855 MS.gene26918:CDS 40.0%
CGCTAATTAAAAGGGTAGCT+AGG + chr1.3:3290856-3290875 MS.gene26918:intron 40.0%
CGGTCGAGATTATGACTATA+TGG + chr1.3:3290604-3290623 MS.gene26918:intron 40.0%
CTTGGATCCTACTATGTTGT+TGG + chr1.3:3292813-3292832 MS.gene26918:CDS 40.0%
GAATTGTGTGTTAGAACGCA+CGG + chr1.3:3290006-3290025 MS.gene26918:intron 40.0%
GCATTCACTTCTACGTTTGT+TGG + chr1.3:3289798-3289817 MS.gene26918:CDS 40.0%
GTATCAAATGAACTTGGAGC+AGG + chr1.3:3292433-3292452 MS.gene26918:CDS 40.0%
TATGTTGTTGGATTACCAGC+TGG + chr1.3:3292825-3292844 MS.gene26918:CDS 40.0%
TCATGATGAACAACACTAGG+AGG - chr1.3:3289669-3289688 None:intergenic 40.0%
TCATGGTGGTTGATTGTCAT+TGG + chr1.3:3291671-3291690 MS.gene26918:CDS 40.0%
TCCTCATGATGAACAACACT+AGG - chr1.3:3289672-3289691 None:intergenic 40.0%
TCTTTATCTCAGTACTCGCT+TGG + chr1.3:3289774-3289793 MS.gene26918:CDS 40.0%
TGCAAAGTTCTCAGTGATAG+TGG + chr1.3:3292468-3292487 MS.gene26918:CDS 40.0%
TGTGCACCATAAAATTGACC+AGG + chr1.3:3291361-3291380 MS.gene26918:intron 40.0%
TTACCAGCTGGGATATTGTT+GGG + chr1.3:3292837-3292856 MS.gene26918:CDS 40.0%
! CAGCAAGTTTAGTTGTTTCC+TGG - chr1.3:3292594-3292613 None:intergenic 40.0%
! TCCTAGTGTTGTTCATCATG+AGG + chr1.3:3289668-3289687 MS.gene26918:CDS 40.0%
! TGTTATCAGGGTATTTGGTC+AGG + chr1.3:3293070-3293089 MS.gene26918:intron 40.0%
!! CACAACAATGCAAAAGTGCT+AGG - chr1.3:3292079-3292098 None:intergenic 40.0%
!! TTGGGCTTCACATTTGGTTT+TGG + chr1.3:3292855-3292874 MS.gene26918:CDS 40.0%
!!! GTTTTTGGTTGGCAACAGTT+GGG + chr1.3:3290129-3290148 MS.gene26918:intron 40.0%
!!! TGTTTTTGGTTGGCAACAGT+TGG + chr1.3:3290128-3290147 MS.gene26918:intron 40.0%
AAATCAGATGGTGCTTGGAG+TGG + chr1.3:3291719-3291738 MS.gene26918:CDS 45.0%
ACAAGCACAAAGGAAAGTCC+TGG + chr1.3:3291538-3291557 MS.gene26918:CDS 45.0%
ACACTATGTGGGCAAGCATT+TGG + chr1.3:3290171-3290190 MS.gene26918:CDS 45.0%
ACTCCAAGCACCATCTGATT+TGG - chr1.3:3291720-3291739 None:intergenic 45.0%
AGTGCATTGGAGACACTATG+TGG + chr1.3:3290159-3290178 MS.gene26918:CDS 45.0%
ATTTGGTCAGGTCTGATTGG+AGG + chr1.3:3293082-3293101 MS.gene26918:CDS 45.0%
CAAGATCGAGCTCGTTAACA+TGG - chr1.3:3289824-3289843 None:intergenic 45.0%
CCCGCTAATGTTCTCAAAGA+GGG + chr1.3:3290886-3290905 MS.gene26918:intron 45.0%
CCGCTAATGTTCTCAAAGAG+GGG + chr1.3:3290887-3290906 MS.gene26918:intron 45.0%
GAAGGGCTTAAATCGTCGAT+CGG + chr1.3:3290468-3290487 MS.gene26918:intron 45.0%
GATCATGGCAACAACACCAA+TGG - chr1.3:3292512-3292531 None:intergenic 45.0%
GCCATTATCGTGTAATGACC+TGG - chr1.3:3291382-3291401 None:intergenic 45.0%
GGTATTTGGTCAGGTCTGAT+TGG + chr1.3:3293079-3293098 MS.gene26918:CDS 45.0%
GTGCATTGGAGACACTATGT+GGG + chr1.3:3290160-3290179 MS.gene26918:CDS 45.0%
TCACCAAATCAGATGGTGCT+TGG + chr1.3:3291714-3291733 MS.gene26918:CDS 45.0%
TGGTAGGCACATTTGCTTTG+TGG + chr1.3:3291462-3291481 MS.gene26918:intron 45.0%
TGTGACTAACCAGACAAGAC+TGG - chr1.3:3292655-3292674 None:intergenic 45.0%
TTCTCAAAGAGGGGACCAAA+GGG + chr1.3:3290896-3290915 MS.gene26918:intron 45.0%
! AACCAGACAAGACTGGTTGT+AGG - chr1.3:3292648-3292667 None:intergenic 45.0%
! CCCCTCTTTGAGAACATTAG+CGG - chr1.3:3290890-3290909 None:intergenic 45.0%
! CCCTCTTTGAGAACATTAGC+GGG - chr1.3:3290889-3290908 None:intergenic 45.0%
! GAACTTGGAGCAGGTGATTT+TGG + chr1.3:3292442-3292461 MS.gene26918:CDS 45.0%
! GGAAAGTCCTGGTGATGTTA+TGG + chr1.3:3291549-3291568 MS.gene26918:CDS 45.0%
! GTGATGTCAGCTTGGAGTTT+TGG + chr1.3:3291897-3291916 MS.gene26918:intron 45.0%
! TGGATTATCTTGGTGGCTAC+AGG + chr1.3:3290237-3290256 MS.gene26918:CDS 45.0%
! TGGTTTCGCCTTTGGTTTCT+TGG + chr1.3:3289875-3289894 MS.gene26918:CDS 45.0%
!! GTTATTGCTGGTTTCGCCTT+TGG + chr1.3:3289867-3289886 MS.gene26918:CDS 45.0%
!! TTAGGTGTTGCTATTGGAGC+TGG + chr1.3:3292762-3292781 MS.gene26918:intron 45.0%
!!! CACATTTGGTTTTGGAGCAG+AGG + chr1.3:3292863-3292882 MS.gene26918:CDS 45.0%
AAGCCCAACAATATCCCAGC+TGG - chr1.3:3292843-3292862 None:intergenic 50.0%
ACAGCATCCAATGGCACCAA+AGG - chr1.3:3291965-3291984 None:intergenic 50.0%
AGAAAGCCGTGTGAGGAAGT+GGG + chr1.3:3293259-3293278 MS.gene26918:CDS 50.0%
ATGAAGCAGAAAGCCGTGTG+AGG + chr1.3:3293252-3293271 MS.gene26918:CDS 50.0%
CAGCATCCAATGGCACCAAA+GGG - chr1.3:3291964-3291983 None:intergenic 50.0%
CTGTCCAACGAGCTTCAAGA+GGG - chr1.3:3290298-3290317 None:intergenic 50.0%
GAGTGGAGTCGAAGAAGCTA+TGG + chr1.3:3289724-3289743 MS.gene26918:CDS 50.0%
GCCCGCTAATGTTCTCAAAG+AGG + chr1.3:3290885-3290904 MS.gene26918:intron 50.0%
GGGATATGATGATCGCGCTA+GGG + chr1.3:3292257-3292276 MS.gene26918:CDS 50.0%
GGTTGGCAACAGTTGGGTAT+GGG + chr1.3:3290135-3290154 MS.gene26918:intron 50.0%
GTTCTCAAAGAGGGGACCAA+AGG + chr1.3:3290895-3290914 MS.gene26918:intron 50.0%
TCTGTCCAACGAGCTTCAAG+AGG - chr1.3:3290299-3290318 None:intergenic 50.0%
TGGGATATGATGATCGCGCT+AGG + chr1.3:3292256-3292275 MS.gene26918:CDS 50.0%
TGGTTGGCAACAGTTGGGTA+TGG + chr1.3:3290134-3290153 MS.gene26918:intron 50.0%
TGTCCAACGAGCTTCAAGAG+GGG - chr1.3:3290297-3290316 None:intergenic 50.0%
TGTTAGAACGCACGGGTGTA+CGG + chr1.3:3290014-3290033 MS.gene26918:intron 50.0%
TTCAAGCTATGAGGTTGCCC+AGG + chr1.3:3292573-3292592 MS.gene26918:CDS 50.0%
! AGCCTACAACCAGTCTTGTC+TGG + chr1.3:3292643-3292662 MS.gene26918:CDS 50.0%
! AGGGCATTTGGCAAACCCTT+TGG + chr1.3:3291946-3291965 MS.gene26918:CDS 50.0%
! GGTGGTGATAACAGGGCATT+TGG + chr1.3:3291934-3291953 MS.gene26918:CDS 50.0%
! GTGCTTGGAGTGGATTCTCA+TGG + chr1.3:3291729-3291748 MS.gene26918:CDS 50.0%
! GTGTTGCTATTGGAGCTGGT+TGG + chr1.3:3292766-3292785 MS.gene26918:CDS 50.0%
! GTTGGGTATGGGAAGTGCAT+TGG + chr1.3:3290146-3290165 MS.gene26918:intron 50.0%
!! AAGGGCAAGGTGTTGCGATA+TGG - chr1.3:3291039-3291058 None:intergenic 50.0%
!! AGGGCAAGGTGTTGCGATAT+GGG - chr1.3:3291038-3291057 None:intergenic 50.0%
AACTGGTACCAGATCCCCCA+TGG + chr1.3:3291005-3291024 MS.gene26918:intron 55.0%
ACTCCCCTCTTGAAGCTCGT+TGG + chr1.3:3290291-3290310 MS.gene26918:CDS 55.0%
ATATGGGGGCTGTACCATGG+GGG - chr1.3:3291022-3291041 None:intergenic 55.0%
CAGAAAGCCGTGTGAGGAAG+TGG + chr1.3:3293258-3293277 MS.gene26918:CDS 55.0%
CGATATGGGGGCTGTACCAT+GGG - chr1.3:3291024-3291043 None:intergenic 55.0%
GAAAGCCGTGTGAGGAAGTG+GGG + chr1.3:3293260-3293279 MS.gene26918:CDS 55.0%
GATATGGGGGCTGTACCATG+GGG - chr1.3:3291023-3291042 None:intergenic 55.0%
GATGAGATCGCAGAAGCTGC+TGG + chr1.3:3290321-3290340 MS.gene26918:CDS 55.0%
TTCCTCCCCACTTCCTCACA+CGG - chr1.3:3293268-3293287 None:intergenic 55.0%
!! GGCAAACCCTTTGGTGCCAT+TGG + chr1.3:3291955-3291974 MS.gene26918:CDS 55.0%
!! GGCAAGGTGTTGCGATATGG+GGG - chr1.3:3291036-3291055 None:intergenic 55.0%
!! GGGCAAGGTGTTGCGATATG+GGG - chr1.3:3291037-3291056 None:intergenic 55.0%
!! TGTGGGCAAGCATTTGGTGC+TGG + chr1.3:3290177-3290196 MS.gene26918:CDS 55.0%
CGCAACACCTTGCCCTTGCT+AGG + chr1.3:3291042-3291061 MS.gene26918:intron 60.0%
GCGATATGGGGGCTGTACCA+TGG - chr1.3:3291025-3291044 None:intergenic 60.0%
AGCCGTGTGAGGAAGTGGGG+AGG + chr1.3:3293263-3293282 MS.gene26918:CDS 65.0%
GGGCTGTACCATGGGGGATC+TGG - chr1.3:3291016-3291035 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 3289624 3293307 3289624 ID=MS.gene26918
chr1.3 mRNA 3289624 3293307 3289624 ID=MS.gene26918.t1;Parent=MS.gene26918
chr1.3 exon 3289624 3289896 3289624 ID=MS.gene26918.t1.exon1;Parent=MS.gene26918.t1
chr1.3 CDS 3289624 3289896 3289624 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
chr1.3 exon 3290147 3290342 3290147 ID=MS.gene26918.t1.exon2;Parent=MS.gene26918.t1
chr1.3 CDS 3290147 3290342 3290147 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
chr1.3 exon 3291468 3291813 3291468 ID=MS.gene26918.t1.exon3;Parent=MS.gene26918.t1
chr1.3 CDS 3291468 3291813 3291468 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
chr1.3 exon 3291907 3291993 3291907 ID=MS.gene26918.t1.exon4;Parent=MS.gene26918.t1
chr1.3 CDS 3291907 3291993 3291907 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
chr1.3 exon 3292240 3292296 3292240 ID=MS.gene26918.t1.exon5;Parent=MS.gene26918.t1
chr1.3 CDS 3292240 3292296 3292240 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
chr1.3 exon 3292426 3292664 3292426 ID=MS.gene26918.t1.exon6;Parent=MS.gene26918.t1
chr1.3 CDS 3292426 3292664 3292426 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
chr1.3 exon 3292766 3292884 3292766 ID=MS.gene26918.t1.exon7;Parent=MS.gene26918.t1
chr1.3 CDS 3292766 3292884 3292766 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
chr1.3 exon 3293079 3293165 3293079 ID=MS.gene26918.t1.exon8;Parent=MS.gene26918.t1
chr1.3 CDS 3293079 3293165 3293079 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
chr1.3 exon 3293248 3293307 3293248 ID=MS.gene26918.t1.exon9;Parent=MS.gene26918.t1
chr1.3 CDS 3293248 3293307 3293248 ID=cds.MS.gene26918.t1;Parent=MS.gene26918.t1
Gene Sequence

>MS.gene26918

ATGGCTATCGACAGTCCTCTACTAGATAACAATGTCAACTCTCCTCCTAGTGTTGTTCATCATGAGGAAGAGAAGCCACTGAAAATTGTTCACAAAGTTGGAGTGGAGTCGAAGAAGCTATGGAAAATAGCCGGTCCAACAATCTTAACTTCTTTATCTCAGTACTCGCTTGGTGCATTCACTTCTACGTTTGTTGGCCATGTTAACGAGCTCGATCTTGCAGCTTTTTCTGTTGAAAATTCTGTTATTGCTGGTTTCGCCTTTGGTTTCTTGGTATGTAAACTTTTCTCATCTCCGCTTTATTATTACATAACACTTATTTTTGTTCTTTAAGGAGACTAACGACAAAACTCGCACACATTGAAAAATGTTGAGTTGTGTGGAATTGTGTGTTAGAACGCACGGGTGTACGGTTTAGTTACACTTATCTTTAACTAGTACATTTGTTTTTACCAAAAAAAAAAAAAAATGTATCCTCAAGTTTATGATTTATAAAATTGTTTTTGTTTTTGGTTGGCAACAGTTGGGTATGGGAAGTGCATTGGAGACACTATGTGGGCAAGCATTTGGTGCTGGTCATATAAGAATGATGGGAATTTACATGCAAAGATCATGGATTATCTTGGTGGCTACAGGCATTTTGTTGTTACCTTTTTATATTTGGGCAACTCCCCTCTTGAAGCTCGTTGGACAGACTGATGAGATCGCAGAAGCTGCTGGTTAGTTACTTATATAAGTTATATTCCTATCATTTAAATTTGGACTAAAACTGAAGACAGAGAATCCATTTCCGTAAATATTTCTCTTGTAAATACACTACTTTCAACTTGTTACTATTTAGTTTGAAGGGCTTAAATCGTCGATCGGTTGTCGAAGTTTTTTACAATCATTATAGTTAGTAAGTTCATTAAGCAGCCGTACGTCTTCATTGTGACTTTTGTATATAAAAAACCCAATGTCGATCGTTCAATGTAAATTAACGGTCGAGATTATGACTATATGGAATCAAGTTCCATCTTTTCACTAGTTAAAGGGATAGTTAATTTGAAGGGCTTGAATTGATCGTTGTCGAAATTTTCTACCATCATTATAGTTAGTAAGTTAATTTAAGTAGTTGGACGTCTTGCATTATGAATTAAGTATATCGAAAACTCAAAATGTCGATCGTCTGATCTAAATTAACGATCGAGATTATGACTACAAGAGTACACAAGAAATCGAGTTCCATTTTTCGCTAATTAAAAGGGTAGCTAGGATTAGGGCCCGCTAATGTTCTCAAAGAGGGGACCAAAGGGTAAATATACTACTTTTGTGGGTCTTGTTGAACACTTTTATTAAAGTTTACATGTAAAAAACTTCGGTTCATAAAAATTTGCAGCGTAACTGGTACCAGATCCCCCATGGTACAGCCCCCATATCGCAACACCTTGCCCTTGCTAGGAAATTTTAAATGCGGATTAAAGTATAAGTACAAGATATTATCATATTAATAATGTAGCACTATAAATGCACTTGTTTGTACGAGTAAAACTATGATAATGACTTGGGGAACTTGTTATCTAGATGTGATATAATTTGTTACGACTTTATCTAACATACACAAGCAAAATATCTAACATTATATATGTATCTTTTTTACTATTCAATCTATAAATCACATTGTATCTCATTTAATTGTGATATTTATTGATTCAATAGTGGAAATTAGATTGTGCATGATACAAAACTTGTTTTACTTGTGCACCATAAAATTGACCAGGTCATTACACGATAATGGCTTGTGTGTTTGTTTGGTTGTTAGTTTCTTTTTTATATATTTATTTTATCAATTTTCCTTTTGGTAGGCACATTTGCTTTGTGGATGATACCACAAATATTTGCATATGCTTTGAACTTTCCAATTCAAAAGTTCTTACAAGCACAAAGGAAAGTCCTGGTGATGTTATGGATATCATTAGGTGTTTTAGTGTTACATGTACCTCTTAGTTGGCTTCTAATATTGAAACTTAATTGGGGCTTAGTTGGAGCTGCAATTATTCTCAACACATCATGGTGGTTGATTGTCATTGGTCAACTTTTGTACATTTTCATCACCAAATCAGATGGTGCTTGGAGTGGATTCTCATGGCTAGCATTTGCAGATTTGTTTAATTTTTTGAAACTTTCTTTAGCTTCAGCTGTTATGTTATGGTATATTTTCTCAAACTTTATATTTTCAATTCAGCTTAATTAATATTTGATGGAAACTTTATATTGAATTGAATTTTGAAAATGTGATGTCAGCTTGGAGTTTTGGTACTTGATGATATTGGTGGTGATAACAGGGCATTTGGCAAACCCTTTGGTGCCATTGGATGCTGTATCTATTTGGTAAACCCTTTCTCCAAATTCTCATTGTGCTATAGAAGTTATGGTTTTCCAAATAAAAGTGATAGACATTTTCTATTTTGTTCCTAGCACTTTTGCATTGTTGTGTGATTGCAATTCAAAACTGAGGATTAATTAGGCTTGGGTTAGTCATTGTAAGCATATCATCCAATTGCAGTATACAAGGAGAACATGACAACAAAAGTTAAGATCAAGAATTGATATTGATGTGTGTTTCCATGATTGCAGTATGAACATAAATGGTTGGGATATGATGATCGCGCTAGGGTTTAACGTTGCAATAAGGTCATTATCGCTTTCTCTATTTCTTTTCTTGACAAACTTACCTTCTTTAAAGTGAACAATTTATTTTCTTTTCTTGAGTGAATAGTTAGTCGCAGTTTTCTATACTGATTATGTTTAATTTATGAACAGTGTGAGAGTATCAAATGAACTTGGAGCAGGTGATTTTGGAGCTGCAAAGTTCTCAGTGATAGTGGTTTCTCTCACATCAATATCCATTGGTGTTGTTGCCATGATCATAGTACTAACAACTAGAGATTACTTTCCTCAATTGTTCACTTCAAGCTATGAGGTTGCCCAGGAAACAACTAAACTTGCTGCTTTGCTTAGTATCACTGTACTTCTAAACAGCCTACAACCAGTCTTGTCTGGTTAGTCACAAAAAGATTGAAACATTGTTACTATAAATGTTTTTATGCATTGAAACATTGTTACTATAAATTAATTTATGCATTTGTTGTTACTATTTTAGGTGTTGCTATTGGAGCTGGTTGGCAATCTCTTGTAGCTTACATAAATCTTGGATCCTACTATGTTGTTGGATTACCAGCTGGGATATTGTTGGGCTTCACATTTGGTTTTGGAGCAGAGGTGATTTACTACCCCTTATTTCTCTTGAATTTAATTCTACAACACTTTAAATATATAGTATAATTTTTAGAAGGATTCATTTAGTAGTTTAATATTTATTGTTTGTTAATGAGGACTATTTTGTAATTTTTTATTGTATTATCAACATAAATTTATTTGTTCTTACTTTTTTTATACCTATGATTTGTTATCAGGGTATTTGGTCAGGTCTGATTGGAGGCATAGCTGTGCAGACCATAATCCTTATAATTGTTACTTCATTAACCAACTGGAAAAAAGAGGTTAGTGCAATTCATTTTTGTATTAGCAAATAAATAACCTATTGTTAGTTGAAAATTAATTTCATATCTTTGGATTTCACAGGCTGATGAAGCAGAAAGCCGTGTGAGGAAGTGGGGAGGAACAATTTCAATTGAGAATTAA
Protein sequence

>MS.gene26918.t1

MAIDSPLLDNNVNSPPSVVHHEEEKPLKIVHKVGVESKKLWKIAGPTILTSLSQYSLGAFTSTFVGHVNELDLAAFSVENSVIAGFAFGFLLGMGSALETLCGQAFGAGHIRMMGIYMQRSWIILVATGILLLPFYIWATPLLKLVGQTDEIAEAAGTFALWMIPQIFAYALNFPIQKFLQAQRKVLVMLWISLGVLVLHVPLSWLLILKLNWGLVGAAIILNTSWWLIVIGQLLYIFITKSDGAWSGFSWLAFADLFNFLKLSLASAVMLCLEFWYLMILVVITGHLANPLVPLDAVSICMNINGWDMMIALGFNVAISVRVSNELGAGDFGAAKFSVIVVSLTSISIGVVAMIIVLTTRDYFPQLFTSSYEVAQETTKLAALLSITVLLNSLQPVLSGVAIGAGWQSLVAYINLGSYYVVGLPAGILLGFTFGFGAEGIWSGLIGGIAVQTIILIIVTSLTNWKKEADEAESRVRKWGGTISIEN