Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26928.t1 | RHN77417.1 | 97.8 | 232 | 5 | 0 | 1 | 232 | 3 | 234 | 1.30E-119 | 439.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26928.t1 | Q09463 | 48.8 | 123 | 52 | 4 | 26 | 147 | 20 | 132 | 3.1e-26 | 120.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26928.t1 | A0A072VF61 | 97.8 | 232 | 5 | 0 | 1 | 232 | 1 | 232 | 9.1e-120 | 439.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049627 | MS.gene26928 | -0.801379 | 9.26E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26928 | MS.gene055526 | PPI |
| MS.gene06250 | MS.gene26928 | PPI |
| MS.gene26928 | MS.gene41663 | PPI |
| MS.gene013177 | MS.gene26928 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26928.t1 | MTR_1g021895 | 99.138 | 232 | 2 | 0 | 1 | 232 | 1 | 232 | 8.87e-173 | 474 |
| MS.gene26928.t1 | MTR_5g019300 | 56.067 | 239 | 95 | 4 | 1 | 231 | 1 | 237 | 1.47e-77 | 233 |
| MS.gene26928.t1 | MTR_8g465910 | 33.186 | 226 | 120 | 9 | 19 | 230 | 34 | 242 | 3.13e-30 | 112 |
| MS.gene26928.t1 | MTR_2g090325 | 52.222 | 90 | 37 | 2 | 21 | 110 | 10 | 93 | 8.04e-30 | 110 |
| MS.gene26928.t1 | MTR_2g090330 | 48.958 | 96 | 44 | 2 | 22 | 112 | 22 | 117 | 1.44e-28 | 106 |
| MS.gene26928.t1 | MTR_2g090330 | 48.958 | 96 | 44 | 2 | 22 | 112 | 25 | 120 | 1.67e-28 | 105 |
| MS.gene26928.t1 | MTR_7g093390 | 51.163 | 86 | 40 | 1 | 30 | 115 | 170 | 253 | 5.23e-28 | 110 |
| MS.gene26928.t1 | MTR_2g090295 | 50.000 | 94 | 39 | 2 | 25 | 110 | 35 | 128 | 3.94e-27 | 104 |
| MS.gene26928.t1 | MTR_1g054210 | 41.379 | 116 | 65 | 2 | 3 | 115 | 93 | 208 | 7.70e-27 | 103 |
| MS.gene26928.t1 | MTR_1g054280 | 47.191 | 89 | 44 | 3 | 25 | 111 | 71 | 158 | 1.41e-25 | 100 |
| MS.gene26928.t1 | MTR_1g054260 | 38.843 | 121 | 64 | 2 | 7 | 117 | 64 | 184 | 1.27e-24 | 97.1 |
| MS.gene26928.t1 | MTR_4g088870 | 38.406 | 138 | 67 | 5 | 30 | 149 | 32 | 169 | 4.00e-24 | 95.5 |
| MS.gene26928.t1 | MTR_4g029440 | 38.793 | 116 | 64 | 2 | 30 | 138 | 126 | 241 | 2.37e-23 | 97.4 |
| MS.gene26928.t1 | MTR_2g013550 | 52.857 | 70 | 26 | 1 | 26 | 88 | 23 | 92 | 2.81e-23 | 94.4 |
| MS.gene26928.t1 | MTR_4g029440 | 38.793 | 116 | 64 | 2 | 30 | 138 | 132 | 247 | 2.81e-23 | 97.4 |
| MS.gene26928.t1 | MTR_4g088875 | 48.889 | 90 | 35 | 3 | 30 | 108 | 31 | 120 | 3.94e-23 | 94.0 |
| MS.gene26928.t1 | MTR_1g054465 | 42.308 | 104 | 46 | 3 | 19 | 108 | 40 | 143 | 4.31e-23 | 92.8 |
| MS.gene26928.t1 | MTR_2g061230 | 38.636 | 88 | 53 | 1 | 30 | 116 | 107 | 194 | 2.82e-19 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26928.t1 | AT1G19310 | 67.347 | 196 | 47 | 6 | 30 | 215 | 21 | 209 | 8.77e-85 | 251 |
| MS.gene26928.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
| MS.gene26928.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
| MS.gene26928.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
| MS.gene26928.t1 | AT1G74990 | 55.639 | 133 | 56 | 2 | 20 | 151 | 7 | 137 | 1.88e-48 | 156 |
| MS.gene26928.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
| MS.gene26928.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
| MS.gene26928.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
| MS.gene26928.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
| MS.gene26928.t1 | AT4G27470 | 44.828 | 116 | 51 | 3 | 25 | 127 | 37 | 152 | 4.67e-27 | 104 |
| MS.gene26928.t1 | AT4G28270 | 46.875 | 96 | 32 | 3 | 28 | 110 | 17 | 106 | 1.88e-25 | 99.0 |
| MS.gene26928.t1 | AT2G42030 | 45.055 | 91 | 47 | 2 | 25 | 115 | 134 | 221 | 3.83e-25 | 102 |
| MS.gene26928.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
| MS.gene26928.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
| MS.gene26928.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
| MS.gene26928.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
| MS.gene26928.t1 | AT2G44410 | 40.659 | 91 | 51 | 2 | 28 | 116 | 121 | 210 | 3.11e-19 | 85.9 |
Find 76 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAATTGGTTCCTTTATA+TGG | 0.186055 | 1.3:+3207460 | MS.gene26928:CDS |
| TCAGGTGGAGGTGCAGTTTC+AGG | 0.199841 | 1.3:-3207562 | None:intergenic |
| GGAGCTGCTGGTTTCCCTTA+TGG | 0.211929 | 1.3:+3207766 | MS.gene26928:CDS |
| CCAAATCCATGTTGAGAAAA+AGG | 0.224751 | 1.3:-3207592 | None:intergenic |
| GAGCTGCTGGTTTCCCTTAT+GGG | 0.235535 | 1.3:+3207767 | MS.gene26928:CDS |
| TTTGGATTCACAGGTGGATT+AGG | 0.251366 | 1.3:+3207610 | MS.gene26928:CDS |
| TTCACATTTGCTGCCGGATT+TGG | 0.272552 | 1.3:+3207670 | MS.gene26928:CDS |
| TACAGATGGCAAGTGGGTTT+GGG | 0.276615 | 1.3:+3207221 | None:intergenic |
| GCTGCCGGATTTGGTGGATT+GGG | 0.286886 | 1.3:+3207679 | MS.gene26928:CDS |
| TTGGATTCACAGGTGGATTA+GGG | 0.303936 | 1.3:+3207611 | MS.gene26928:CDS |
| GATGATTGAGGAGGAGAAAT+TGG | 0.306323 | 1.3:+3207447 | MS.gene26928:CDS |
| CCGGCAACAACTGCAAGATT+TGG | 0.331916 | 1.3:+3207643 | MS.gene26928:CDS |
| TGACCACACAAAGTAATAAT+AGG | 0.332316 | 1.3:-3207349 | None:intergenic |
| TTACAGATGGCAAGTGGGTT+TGG | 0.332494 | 1.3:+3207220 | None:intergenic |
| TGCTGCCGGATTTGGTGGAT+TGG | 0.350270 | 1.3:+3207678 | MS.gene26928:CDS |
| CCAAATCTTGCAGTTGTTGC+CGG | 0.353767 | 1.3:-3207643 | None:intergenic |
| ATGCAACTGAAAGTTAAATA+AGG | 0.360551 | 1.3:-3207716 | None:intergenic |
| GTTGGCCTTGTCTTTACAAA+TGG | 0.380746 | 1.3:+3207380 | MS.gene26928:CDS |
| TCCGAGGTCGAAATCTATTC+CGG | 0.384427 | 1.3:+3207504 | MS.gene26928:CDS |
| AGAAATTGGTTCCTTTATAT+GGG | 0.388973 | 1.3:+3207461 | MS.gene26928:CDS |
| GTCTTTCCTCTCCCATATAA+AGG | 0.393313 | 1.3:-3207472 | None:intergenic |
| GCCATGTATGGTGGAGCTGC+TGG | 0.395626 | 1.3:+3207754 | MS.gene26928:CDS |
| TACTCGAGTAAGGAGGGCTT+GGG | 0.406878 | 1.3:-3207264 | None:intergenic |
| CTGCCGGATTTGGTGGATTG+GGG | 0.407237 | 1.3:+3207680 | MS.gene26928:CDS |
| CGGCAACAACTGCAAGATTT+GGG | 0.413932 | 1.3:+3207644 | MS.gene26928:CDS |
| TCAATCATCGCTTTACAAAC+CGG | 0.418409 | 1.3:-3207433 | None:intergenic |
| TTTCACGGTGGGGCCATGTA+TGG | 0.430081 | 1.3:+3207742 | MS.gene26928:CDS |
| TTATTATTATTACTCGAGTA+AGG | 0.430340 | 1.3:-3207274 | None:intergenic |
| CAACATGGATTTGGATTCAC+AGG | 0.439413 | 1.3:+3207601 | MS.gene26928:CDS |
| AATAATAATAACAGTGATGC+TGG | 0.448158 | 1.3:+3207286 | MS.gene26928:CDS |
| ACATTTGCTGCCGGATTTGG+TGG | 0.448518 | 1.3:+3207673 | MS.gene26928:CDS |
| TTACTCGAGTAAGGAGGGCT+TGG | 0.452550 | 1.3:-3207265 | None:intergenic |
| CTCCCAGTCACGAGAATGCC+CGG | 0.453449 | 1.3:+3207414 | MS.gene26928:CDS |
| CCGAGGTCGAAATCTATTCC+GGG | 0.463757 | 1.3:+3207505 | MS.gene26928:CDS |
| AAACCGGGCATTCTCGTGAC+TGG | 0.466413 | 1.3:-3207417 | None:intergenic |
| TTATTTAACTTTCAGTTGCA+TGG | 0.466871 | 1.3:+3207718 | MS.gene26928:CDS |
| AATGCATTAGAAAACCCATA+AGG | 0.474862 | 1.3:-3207781 | None:intergenic |
| GTGTGGTACTTGCTTTACTT+TGG | 0.475767 | 1.3:+3207896 | MS.gene26928:CDS |
| GATCCTATTATTACTTTGTG+TGG | 0.482342 | 1.3:+3207346 | MS.gene26928:CDS |
| ATGCATTAGAAAACCCATAA+GGG | 0.492861 | 1.3:-3207780 | None:intergenic |
| TTGGTTCCTTTATATGGGAG+AGG | 0.500872 | 1.3:+3207466 | MS.gene26928:CDS |
| GGGAATTTCACATTTGCTGC+CGG | 0.503544 | 1.3:+3207664 | MS.gene26928:CDS |
| ACCAGCAGCTCCACCATACA+TGG | 0.508328 | 1.3:-3207755 | None:intergenic |
| AATATCCCTCATCGTCCTGC+CGG | 0.511349 | 1.3:+3207532 | MS.gene26928:CDS |
| CACGGTGGGGCCATGTATGG+TGG | 0.514031 | 1.3:+3207745 | MS.gene26928:CDS |
| AAAGGATTTGATTCAGGTGG+AGG | 0.516952 | 1.3:-3207574 | None:intergenic |
| TGCCGGATTTGGTGGATTGG+GGG | 0.524202 | 1.3:+3207681 | MS.gene26928:CDS |
| TATCCTCTGCACACAGGTCA+AGG | 0.531811 | 1.3:+3207826 | MS.gene26928:CDS |
| GTTTCAGGTCTCTGACCGGC+AGG | 0.546908 | 1.3:-3207547 | None:intergenic |
| TATTATTACTCGAGTAAGGA+GGG | 0.550496 | 1.3:-3207270 | None:intergenic |
| TGCAGTTTCAGGTCTCTGAC+CGG | 0.558086 | 1.3:-3207551 | None:intergenic |
| GGATTCACAGGTGGATTAGG+GGG | 0.558493 | 1.3:+3207613 | MS.gene26928:CDS |
| CAATCATCGCTTTACAAACC+GGG | 0.560492 | 1.3:-3207432 | None:intergenic |
| CATGGATTTGGATTCACAGG+TGG | 0.560706 | 1.3:+3207604 | MS.gene26928:CDS |
| ACAGATGGCAAGTGGGTTTG+GGG | 0.562002 | 1.3:+3207222 | None:intergenic |
| CTCTGACCGGCAGGACGATG+AGG | 0.563898 | 1.3:-3207538 | None:intergenic |
| AACAAGATTATTATCTGAAG+AGG | 0.566850 | 1.3:+3207851 | MS.gene26928:CDS |
| AACCGGGCATTCTCGTGACT+GGG | 0.572439 | 1.3:-3207416 | None:intergenic |
| ACTCGAGTAAGGAGGGCTTG+GGG | 0.581186 | 1.3:-3207263 | None:intergenic |
| AACTGAAAGTTAAATAAGGA+TGG | 0.582621 | 1.3:-3207712 | None:intergenic |
| TTATTATTACTCGAGTAAGG+AGG | 0.589072 | 1.3:-3207271 | None:intergenic |
| GCCGGATTTGGTGGATTGGG+GGG | 0.591932 | 1.3:+3207682 | MS.gene26928:CDS |
| CTCGAGTAAGGAGGGCTTGG+GGG | 0.592036 | 1.3:-3207262 | None:intergenic |
| TGCCCTTGACCTGTGTGCAG+AGG | 0.596436 | 1.3:-3207829 | None:intergenic |
| ATCCTCTGCACACAGGTCAA+GGG | 0.610816 | 1.3:+3207827 | MS.gene26928:CDS |
| TCTGACCGGCAGGACGATGA+GGG | 0.614884 | 1.3:-3207537 | None:intergenic |
| CCCGGAATAGATTTCGACCT+CGG | 0.616864 | 1.3:-3207505 | None:intergenic |
| TGGATTCACAGGTGGATTAG+GGG | 0.620475 | 1.3:+3207612 | MS.gene26928:CDS |
| GGTTTGGGGAATCAACAAGC+AGG | 0.622199 | 1.3:+3207236 | MS.gene26928:CDS |
| CATAGATATCCTCTGCACAC+AGG | 0.625097 | 1.3:+3207820 | MS.gene26928:CDS |
| CGATGAGGGATATTAACACC+CGG | 0.632199 | 1.3:-3207523 | None:intergenic |
| GGTTTGTAAAGCGATGATTG+AGG | 0.642603 | 1.3:+3207435 | MS.gene26928:CDS |
| TTGTAAAGCGATGATTGAGG+AGG | 0.645599 | 1.3:+3207438 | MS.gene26928:CDS |
| TGAAGCCATTTGTAAAGACA+AGG | 0.646514 | 1.3:-3207385 | None:intergenic |
| GCAGAGGATATCTATGAACA+TGG | 0.651368 | 1.3:-3207813 | None:intergenic |
| GAAAGACTTCAACTGATCCG+AGG | 0.691424 | 1.3:+3207488 | MS.gene26928:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATTACTCGAGTA+AGG | - | chr1.3:3207277-3207296 | None:intergenic | 20.0% |
| ! | AACAAGATTATTATCTGAAG+AGG | + | chr1.3:3207851-3207870 | MS.gene26928:CDS | 25.0% |
| ! | AACTGAAAGTTAAATAAGGA+TGG | - | chr1.3:3207715-3207734 | None:intergenic | 25.0% |
| ! | AATAATAATAACAGTGATGC+TGG | + | chr1.3:3207286-3207305 | MS.gene26928:CDS | 25.0% |
| ! | ATGCAACTGAAAGTTAAATA+AGG | - | chr1.3:3207719-3207738 | None:intergenic | 25.0% |
| !! | AGAAATTGGTTCCTTTATAT+GGG | + | chr1.3:3207461-3207480 | MS.gene26928:CDS | 25.0% |
| !! | TTATTTAACTTTCAGTTGCA+TGG | + | chr1.3:3207718-3207737 | MS.gene26928:CDS | 25.0% |
| !!! | GATGTTTGTTATTTTTTGTG+TGG | + | chr1.3:3207879-3207898 | MS.gene26928:CDS | 25.0% |
| AATGCATTAGAAAACCCATA+AGG | - | chr1.3:3207784-3207803 | None:intergenic | 30.0% | |
| ATGCATTAGAAAACCCATAA+GGG | - | chr1.3:3207783-3207802 | None:intergenic | 30.0% | |
| GATCCTATTATTACTTTGTG+TGG | + | chr1.3:3207346-3207365 | MS.gene26928:CDS | 30.0% | |
| TATTATTACTCGAGTAAGGA+GGG | - | chr1.3:3207273-3207292 | None:intergenic | 30.0% | |
| TGACCACACAAAGTAATAAT+AGG | - | chr1.3:3207352-3207371 | None:intergenic | 30.0% | |
| TGAGAAAAAGGATTTGATTC+AGG | - | chr1.3:3207583-3207602 | None:intergenic | 30.0% | |
| TTATTATTACTCGAGTAAGG+AGG | - | chr1.3:3207274-3207293 | None:intergenic | 30.0% | |
| ! | GAGAAATTGGTTCCTTTATA+TGG | + | chr1.3:3207460-3207479 | MS.gene26928:CDS | 30.0% |
| ! | TCAAATCCTTTTTCTCAACA+TGG | + | chr1.3:3207586-3207605 | MS.gene26928:CDS | 30.0% |
| CCAAATCCATGTTGAGAAAA+AGG | - | chr1.3:3207595-3207614 | None:intergenic | 35.0% | |
| GAAAAAGGATTTGATTCAGG+TGG | - | chr1.3:3207580-3207599 | None:intergenic | 35.0% | |
| TCAATCATCGCTTTACAAAC+CGG | - | chr1.3:3207436-3207455 | None:intergenic | 35.0% | |
| TGAAGCCATTTGTAAAGACA+AGG | - | chr1.3:3207388-3207407 | None:intergenic | 35.0% | |
| ! | CCTTTTTCTCAACATGGATT+TGG | + | chr1.3:3207592-3207611 | MS.gene26928:CDS | 35.0% |
| ! | GGGTTTTCTAATGCATTTCA+CGG | + | chr1.3:3207787-3207806 | MS.gene26928:CDS | 35.0% |
| ! | TTTCAGTTGCATGGTTTTCA+CGG | + | chr1.3:3207727-3207746 | MS.gene26928:CDS | 35.0% |
| ! | TTTTCTAATGCATTTCACGG+TGG | + | chr1.3:3207790-3207809 | MS.gene26928:CDS | 35.0% |
| AAAGGATTTGATTCAGGTGG+AGG | - | chr1.3:3207577-3207596 | None:intergenic | 40.0% | |
| CAACATGGATTTGGATTCAC+AGG | + | chr1.3:3207601-3207620 | MS.gene26928:CDS | 40.0% | |
| CAATCATCGCTTTACAAACC+GGG | - | chr1.3:3207435-3207454 | None:intergenic | 40.0% | |
| GATGATTGAGGAGGAGAAAT+TGG | + | chr1.3:3207447-3207466 | MS.gene26928:CDS | 40.0% | |
| GCAGAGGATATCTATGAACA+TGG | - | chr1.3:3207816-3207835 | None:intergenic | 40.0% | |
| GGTTTGTAAAGCGATGATTG+AGG | + | chr1.3:3207435-3207454 | MS.gene26928:CDS | 40.0% | |
| GTCTTTCCTCTCCCATATAA+AGG | - | chr1.3:3207475-3207494 | None:intergenic | 40.0% | |
| GTGTGGTACTTGCTTTACTT+TGG | + | chr1.3:3207896-3207915 | MS.gene26928:CDS | 40.0% | |
| TTGGTTCCTTTATATGGGAG+AGG | + | chr1.3:3207466-3207485 | MS.gene26928:CDS | 40.0% | |
| TTGTAAAGCGATGATTGAGG+AGG | + | chr1.3:3207438-3207457 | MS.gene26928:CDS | 40.0% | |
| ! | TGTGTGGTCATCTTTTCTGT+TGG | + | chr1.3:3207362-3207381 | MS.gene26928:CDS | 40.0% |
| ! | TTTGGATTCACAGGTGGATT+AGG | + | chr1.3:3207610-3207629 | MS.gene26928:CDS | 40.0% |
| !! | GTTGGCCTTGTCTTTACAAA+TGG | + | chr1.3:3207380-3207399 | MS.gene26928:CDS | 40.0% |
| !! | TTGGATTCACAGGTGGATTA+GGG | + | chr1.3:3207611-3207630 | MS.gene26928:CDS | 40.0% |
| CATAGATATCCTCTGCACAC+AGG | + | chr1.3:3207820-3207839 | MS.gene26928:CDS | 45.0% | |
| CATGGATTTGGATTCACAGG+TGG | + | chr1.3:3207604-3207623 | MS.gene26928:CDS | 45.0% | |
| CCAAATCTTGCAGTTGTTGC+CGG | - | chr1.3:3207646-3207665 | None:intergenic | 45.0% | |
| CGATGAGGGATATTAACACC+CGG | - | chr1.3:3207526-3207545 | None:intergenic | 45.0% | |
| CGGCAACAACTGCAAGATTT+GGG | + | chr1.3:3207644-3207663 | MS.gene26928:CDS | 45.0% | |
| GAAAGACTTCAACTGATCCG+AGG | + | chr1.3:3207488-3207507 | MS.gene26928:CDS | 45.0% | |
| TCCGAGGTCGAAATCTATTC+CGG | + | chr1.3:3207504-3207523 | MS.gene26928:CDS | 45.0% | |
| ! | AGTTGCATGGTTTTCACGGT+GGG | + | chr1.3:3207731-3207750 | MS.gene26928:CDS | 45.0% |
| ! | GGGAATTTCACATTTGCTGC+CGG | + | chr1.3:3207664-3207683 | MS.gene26928:CDS | 45.0% |
| ! | TGGATTAGGGGGATTTGTAC+CGG | + | chr1.3:3207624-3207643 | MS.gene26928:CDS | 45.0% |
| ! | TTCACATTTGCTGCCGGATT+TGG | + | chr1.3:3207670-3207689 | MS.gene26928:CDS | 45.0% |
| !! | TGGATTCACAGGTGGATTAG+GGG | + | chr1.3:3207612-3207631 | MS.gene26928:CDS | 45.0% |
| AATATCCCTCATCGTCCTGC+CGG | + | chr1.3:3207532-3207551 | MS.gene26928:CDS | 50.0% | |
| ATCCTCTGCACACAGGTCAA+GGG | + | chr1.3:3207827-3207846 | MS.gene26928:CDS | 50.0% | |
| CCCGGAATAGATTTCGACCT+CGG | - | chr1.3:3207508-3207527 | None:intergenic | 50.0% | |
| CCGAGGTCGAAATCTATTCC+GGG | + | chr1.3:3207505-3207524 | MS.gene26928:CDS | 50.0% | |
| CCGGCAACAACTGCAAGATT+TGG | + | chr1.3:3207643-3207662 | MS.gene26928:CDS | 50.0% | |
| GGTTTGGGGAATCAACAAGC+AGG | + | chr1.3:3207236-3207255 | MS.gene26928:CDS | 50.0% | |
| TACTCGAGTAAGGAGGGCTT+GGG | - | chr1.3:3207267-3207286 | None:intergenic | 50.0% | |
| TATCCTCTGCACACAGGTCA+AGG | + | chr1.3:3207826-3207845 | MS.gene26928:CDS | 50.0% | |
| TTACTCGAGTAAGGAGGGCT+TGG | - | chr1.3:3207268-3207287 | None:intergenic | 50.0% | |
| ! | ACATTTGCTGCCGGATTTGG+TGG | + | chr1.3:3207673-3207692 | MS.gene26928:CDS | 50.0% |
| ! | CAGTTGCATGGTTTTCACGG+TGG | + | chr1.3:3207730-3207749 | MS.gene26928:CDS | 50.0% |
| ! | GTTGCATGGTTTTCACGGTG+GGG | + | chr1.3:3207732-3207751 | MS.gene26928:CDS | 50.0% |
| ! | TGCAGTTTCAGGTCTCTGAC+CGG | - | chr1.3:3207554-3207573 | None:intergenic | 50.0% |
| !! | GAGCTGCTGGTTTCCCTTAT+GGG | + | chr1.3:3207767-3207786 | MS.gene26928:CDS | 50.0% |
| !! | GGATTCACAGGTGGATTAGG+GGG | + | chr1.3:3207613-3207632 | MS.gene26928:CDS | 50.0% |
| AAACCGGGCATTCTCGTGAC+TGG | - | chr1.3:3207420-3207439 | None:intergenic | 55.0% | |
| AACCGGGCATTCTCGTGACT+GGG | - | chr1.3:3207419-3207438 | None:intergenic | 55.0% | |
| ACCAGCAGCTCCACCATACA+TGG | - | chr1.3:3207758-3207777 | None:intergenic | 55.0% | |
| ACTCGAGTAAGGAGGGCTTG+GGG | - | chr1.3:3207266-3207285 | None:intergenic | 55.0% | |
| TCCCCCCAATCCACCAAATC+CGG | - | chr1.3:3207686-3207705 | None:intergenic | 55.0% | |
| TTTCACGGTGGGGCCATGTA+TGG | + | chr1.3:3207742-3207761 | MS.gene26928:CDS | 55.0% | |
| ! | TCAGGTGGAGGTGCAGTTTC+AGG | - | chr1.3:3207565-3207584 | None:intergenic | 55.0% |
| !! | CTGCCGGATTTGGTGGATTG+GGG | + | chr1.3:3207680-3207699 | MS.gene26928:CDS | 55.0% |
| !! | GCTGCCGGATTTGGTGGATT+GGG | + | chr1.3:3207679-3207698 | MS.gene26928:CDS | 55.0% |
| !! | GGAGCTGCTGGTTTCCCTTA+TGG | + | chr1.3:3207766-3207785 | MS.gene26928:CDS | 55.0% |
| !! | TGCCGGATTTGGTGGATTGG+GGG | + | chr1.3:3207681-3207700 | MS.gene26928:CDS | 55.0% |
| !! | TGCTGCCGGATTTGGTGGAT+TGG | + | chr1.3:3207678-3207697 | MS.gene26928:CDS | 55.0% |
| CTCCCAGTCACGAGAATGCC+CGG | + | chr1.3:3207414-3207433 | MS.gene26928:CDS | 60.0% | |
| CTCGAGTAAGGAGGGCTTGG+GGG | - | chr1.3:3207265-3207284 | None:intergenic | 60.0% | |
| TCTGACCGGCAGGACGATGA+GGG | - | chr1.3:3207540-3207559 | None:intergenic | 60.0% | |
| TGCCCTTGACCTGTGTGCAG+AGG | - | chr1.3:3207832-3207851 | None:intergenic | 60.0% | |
| ! | GCCATGTATGGTGGAGCTGC+TGG | + | chr1.3:3207754-3207773 | MS.gene26928:CDS | 60.0% |
| ! | GTTTCAGGTCTCTGACCGGC+AGG | - | chr1.3:3207550-3207569 | None:intergenic | 60.0% |
| !! | GCCGGATTTGGTGGATTGGG+GGG | + | chr1.3:3207682-3207701 | MS.gene26928:CDS | 60.0% |
| CACGGTGGGGCCATGTATGG+TGG | + | chr1.3:3207745-3207764 | MS.gene26928:CDS | 65.0% | |
| CTCTGACCGGCAGGACGATG+AGG | - | chr1.3:3207541-3207560 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3207226 | 3207924 | 3207226 | ID=MS.gene26928 |
| chr1.3 | mRNA | 3207226 | 3207924 | 3207226 | ID=MS.gene26928.t1;Parent=MS.gene26928 |
| chr1.3 | exon | 3207226 | 3207924 | 3207226 | ID=MS.gene26928.t1.exon1;Parent=MS.gene26928.t1 |
| chr1.3 | CDS | 3207226 | 3207924 | 3207226 | ID=cds.MS.gene26928.t1;Parent=MS.gene26928.t1 |
| Gene Sequence |
| Protein sequence |
