AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049627


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049627.t1 MTR_3g063200 96.104 308 9 1 1 305 128 435 0.0 604
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049627.t1 AT5G16620 59.385 325 99 6 1 303 134 447 1.34e-107 320

Find 80 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATACCTCCTTATCATTT+TGG 0.162044 3.2:-59202658 None:intergenic
AGAAGTCATTTCAAAGATTA+TGG 0.238456 3.2:+59202467 MS.gene049627:CDS
TTCTGCTGCACAGTTTCTTC+TGG 0.245558 3.2:-59199041 None:intergenic
CCTGATGTTAAACAACAATT+TGG 0.258702 3.2:+59201591 MS.gene049627:CDS
GTTTAACATCAGGACTATTA+AGG 0.265236 3.2:-59201581 None:intergenic
GAATTACATTTGAAGGTAGA+AGG 0.280899 3.2:-59200558 None:intergenic
ATCTTTGAAATGACTTCTTC+GGG 0.302432 3.2:-59202462 None:intergenic
AATCTTTGAAATGACTTCTT+CGG 0.305276 3.2:-59202463 None:intergenic
TCATCTTTAACATTGATGTC+TGG 0.329458 3.2:-59197937 None:intergenic
ATATCTTCATCAGATCAAAT+TGG 0.337838 3.2:+59202432 MS.gene049627:intron
GAGCTCTTCCCCGGGGTGTC+AGG 0.345471 3.2:+59202798 MS.gene049627:CDS
TTACTGAAGGCTTCTCAAAA+TGG 0.347654 3.2:+59199200 MS.gene049627:intron
TAACATTGATGTCTGGGCCT+GGG 0.364105 3.2:-59197930 None:intergenic
GAATCGCCAAAACCTTGGTT+AGG 0.388655 3.2:-59199230 None:intergenic
GATAGGGAAATCAGTCTTAT+CGG 0.394782 3.2:+59199862 MS.gene049627:intron
TTTAAGAGAATTACATTTGA+AGG 0.399234 3.2:-59200565 None:intergenic
CATCTTTAACATTGATGTCT+GGG 0.413063 3.2:-59197936 None:intergenic
GAAAGGAGATCCAGGGGAAA+AGG 0.420348 3.2:-59197770 None:intergenic
ATGATAGCTGCTTGAACTCT+AGG 0.421480 3.2:-59202522 None:intergenic
GCAGCAGGCCCTGGTGGTGT+AGG 0.421863 3.2:-59197805 None:intergenic
TGAAAAGCCATGGCAACATC+AGG 0.432003 3.2:-59202495 None:intergenic
TGGTATTTAGCAATATTCAT+TGG 0.436322 3.2:-59202638 None:intergenic
CCAAATTGTTGTTTAACATC+AGG 0.438878 3.2:-59201591 None:intergenic
GGAAAGGGGAAAGGAGATCC+AGG 0.442142 3.2:-59197778 None:intergenic
AAAATATCTGAGCTCTTCCC+CGG 0.442345 3.2:+59202789 MS.gene049627:CDS
GGTGGTGTAGGCATTGGAAA+GGG 0.453571 3.2:-59197793 None:intergenic
TAGAGTTCAAGCAGCTATCA+TGG 0.454291 3.2:+59202524 MS.gene049627:CDS
TGACGCATCAAGTTCATTCA+AGG 0.461157 3.2:+59199088 MS.gene049627:CDS
TTAACATTGATGTCTGGGCC+TGG 0.464648 3.2:-59197931 None:intergenic
AACATTGATGTCTGGGCCTG+GGG 0.470604 3.2:-59197929 None:intergenic
TTAGCGGGTGCAGCAGGCCC+TGG 0.474715 3.2:-59197814 None:intergenic
TTTCCAATGCCTACACCACC+AGG 0.476221 3.2:+59197796 MS.gene049627:CDS
CAAGGCTGGCCTGACACCCC+GGG 0.482492 3.2:-59202807 None:intergenic
CGTATTCATCTGGCCCATCA+TGG 0.482612 3.2:-59197722 None:intergenic
GAAAAGGCACCACTGTCAAA+TGG 0.483131 3.2:-59197754 None:intergenic
TCAAGGCTGGCCTGACACCC+CGG 0.494700 3.2:-59202808 None:intergenic
GGCCCTGGTGGTGTAGGCAT+TGG 0.496472 3.2:-59197799 None:intergenic
GTAGAATTAGCGGGTGCAGC+AGG 0.500448 3.2:-59197820 None:intergenic
TGCTAAATACCAAAATGATA+AGG 0.501507 3.2:+59202649 MS.gene049627:CDS
CATGGGTGGAAGCACTGAAT+GGG 0.502644 3.2:+59201524 MS.gene049627:CDS
TAAACCATCTTCTGCACAGT+TGG 0.509673 3.2:-59199914 None:intergenic
AAACCATCTTCTGCACAGTT+GGG 0.513822 3.2:-59199913 None:intergenic
AAATATCTGAGCTCTTCCCC+GGG 0.513824 3.2:+59202790 MS.gene049627:CDS
GAAGGGTTCCTCATCTCCTC+AGG 0.521165 3.2:-59200540 None:intergenic
ACATGGGTGGAAGCACTGAA+TGG 0.523691 3.2:+59201523 MS.gene049627:CDS
TGAATGGGACAGTCGAATGA+TGG 0.524565 3.2:+59201539 MS.gene049627:CDS
AATCGCCAAAACCTTGGTTA+GGG 0.525969 3.2:-59199229 None:intergenic
TCAAGTTGTTGACGATACTC+AGG 0.527223 3.2:-59200974 None:intergenic
TGAGTACTTGTAGAATTAGC+GGG 0.533577 3.2:-59197829 None:intergenic
GGCCAATCCTGATGTTGCCA+TGG 0.534946 3.2:+59202488 MS.gene049627:CDS
CAAGCTTTCAAGACCATGAT+GGG 0.535142 3.2:+59197709 MS.gene049627:CDS
AGCCATGGCAACATCAGGAT+TGG 0.535702 3.2:-59202490 None:intergenic
GTAGGCATTGGAAAGGGGAA+AGG 0.535843 3.2:-59197787 None:intergenic
ACAAACAAATTAATCAAGGC+TGG 0.540529 3.2:-59202821 None:intergenic
AATTACATTTGAAGGTAGAA+GGG 0.544985 3.2:-59200557 None:intergenic
GGACCCAACTGTGCAGAAGA+TGG 0.556423 3.2:+59199910 MS.gene049627:CDS
CCGGAGAATCGCCAAAACCT+TGG 0.557778 3.2:-59199235 None:intergenic
ACAAGCTTTCAAGACCATGA+TGG 0.559229 3.2:+59197708 MS.gene049627:CDS
TTACGTGCAGATTGAGAACC+CGG 0.570932 3.2:-59199254 None:intergenic
GCTATTTACCTGAGGAGATG+AGG 0.573622 3.2:+59200532 MS.gene049627:intron
TCGCCAAAACCTTGGTTAGG+GGG 0.589507 3.2:-59199227 None:intergenic
TTGAGTACTTGTAGAATTAG+CGG 0.590272 3.2:-59197830 None:intergenic
ACAAAAGTAGAAGCATCCCC+AGG 0.600187 3.2:+59197913 MS.gene049627:CDS
GGATGCTTTAGAGAAAATGA+TGG 0.601657 3.2:+59199886 MS.gene049627:CDS
TGGTGGTGTAGGCATTGGAA+AGG 0.602470 3.2:-59197794 None:intergenic
GCGGGTGCAGCAGGCCCTGG+TGG 0.606201 3.2:-59197811 None:intergenic
AGGTATGTCTACTGTGACAG+TGG 0.607559 3.2:-59197887 None:intergenic
ATCGCCAAAACCTTGGTTAG+GGG 0.619666 3.2:-59199228 None:intergenic
GTGGTGTAGGCATTGGAAAG+GGG 0.622133 3.2:-59197792 None:intergenic
TAAATACCAAAATGATAAGG+AGG 0.626637 3.2:+59202652 MS.gene049627:CDS
TGTTTCAGAAACAACATGGG+TGG 0.635175 3.2:+59201510 MS.gene049627:intron
CTGTTGCAGCTATTTACCTG+AGG 0.645530 3.2:+59200524 MS.gene049627:intron
TGCTTTAGAGAAAATGATGG+AGG 0.646175 3.2:+59199889 MS.gene049627:CDS
AGGGAAATCAGTCTTATCGG+TGG 0.657965 3.2:+59199865 MS.gene049627:intron
GAAAGGGGAAAGGAGATCCA+GGG 0.661185 3.2:-59197777 None:intergenic
TTCCAATGCCTACACCACCA+GGG 0.666256 3.2:+59197797 MS.gene049627:CDS
CAAAATAATCCATTTGACAG+TGG 0.670513 3.2:+59197745 MS.gene049627:CDS
AAGGCTGGCCTGACACCCCG+GGG 0.676232 3.2:-59202806 None:intergenic
AAAGGGGAAAGGAGATCCAG+GGG 0.729197 3.2:-59197776 None:intergenic
AATATCTGAGCTCTTCCCCG+GGG 0.732010 3.2:+59202791 MS.gene049627:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTGAAGTAAAATAAA+AGG + chr3.2:59202036-59202055 MS.gene049627:intron 10.0%
!! ATAAGCAAAAAAAAATAAAT+GGG + chr3.2:59198525-59198544 MS.gene049627:intron 10.0%
!! TATAAGCAAAAAAAAATAAA+TGG + chr3.2:59198524-59198543 MS.gene049627:intron 10.0%
!!! AATTTAATTGATTTATTAAC+GGG + chr3.2:59202190-59202209 MS.gene049627:intron 10.0%
!! AAAAATTAATCAAATATCCA+TGG - chr3.2:59201849-59201868 None:intergenic 15.0%
!! AAAATTAATCAAATATCCAT+GGG - chr3.2:59201848-59201867 None:intergenic 15.0%
!! AAATTTGAATTGAATATGTT+AGG - chr3.2:59201929-59201948 None:intergenic 15.0%
!! ATGTAAAATGTTAGAAAATA+AGG - chr3.2:59202411-59202430 None:intergenic 15.0%
!! TTACCAGTTATAAATAATAA+AGG - chr3.2:59198228-59198247 None:intergenic 15.0%
!! TTCTTACAAGTAATAATAAT+TGG - chr3.2:59201074-59201093 None:intergenic 15.0%
!!! AAATCTTTGAAAATAGAAAA+TGG - chr3.2:59201174-59201193 None:intergenic 15.0%
!!! ACATTGTTATTACTTAATAA+GGG - chr3.2:59199177-59199196 None:intergenic 15.0%
!!! AGTTAATTTATACCATTTTT+TGG + chr3.2:59199734-59199753 MS.gene049627:intron 15.0%
!!! CTTTTTGTTTACATAAAATT+AGG + chr3.2:59198445-59198464 MS.gene049627:intron 15.0%
!!! TAATTTATCTTCATGTTTTT+AGG - chr3.2:59198165-59198184 None:intergenic 15.0%
!!! TACATTGTTATTACTTAATA+AGG - chr3.2:59199178-59199197 None:intergenic 15.0%
!!! TGATTTTTTTTGTTTTGTTT+TGG + chr3.2:59202595-59202614 MS.gene049627:intron 15.0%
!!! TTCTTTGAAATTAATTTCTT+AGG + chr3.2:59199597-59199616 MS.gene049627:intron 15.0%
!!! TTTTACTTCAATAATTTGTA+TGG - chr3.2:59202032-59202051 None:intergenic 15.0%
!! AAAAAAGAAGCTAATATTAC+GGG - chr3.2:59199940-59199959 None:intergenic 20.0%
!! AAAAATCACAAAACATCTTT+AGG - chr3.2:59199150-59199169 None:intergenic 20.0%
!! AACATACTTATACAATATCA+TGG - chr3.2:59200084-59200103 None:intergenic 20.0%
!! AATGATTGTTCATGTTATTA+TGG + chr3.2:59199417-59199436 MS.gene049627:intron 20.0%
!! AGTAATAATAATTGGAAACA+TGG - chr3.2:59201066-59201085 None:intergenic 20.0%
!! ATTAAAAGTGAAAACAGAAA+AGG - chr3.2:59201125-59201144 None:intergenic 20.0%
!! ATTTATAACTGGTAAATTGA+GGG + chr3.2:59198233-59198252 MS.gene049627:intron 20.0%
!! CATAATTGTCGAATTTATAA+AGG + chr3.2:59199464-59199483 MS.gene049627:intron 20.0%
!! GAAAAAAGAAGCTAATATTA+CGG - chr3.2:59199941-59199960 None:intergenic 20.0%
!! GAACAATCATTTATTTAACA+GGG - chr3.2:59199408-59199427 None:intergenic 20.0%
!! TATATACGGCAAATTTATAT+GGG + chr3.2:59200747-59200766 MS.gene049627:intron 20.0%
!! TATTTATAACTGGTAAATTG+AGG + chr3.2:59198232-59198251 MS.gene049627:intron 20.0%
!! TGAACAATCATTTATTTAAC+AGG - chr3.2:59199409-59199428 None:intergenic 20.0%
!! TTATAAATAATAAAGGCGAA+TGG - chr3.2:59198221-59198240 None:intergenic 20.0%
!! TTGTTGTATTGTGTTTATTT+GGG - chr3.2:59198368-59198387 None:intergenic 20.0%
!! TTTAAGAGAATTACATTTGA+AGG - chr3.2:59200568-59200587 None:intergenic 20.0%
!!! AAAAGAAAGCTCATAAATTT+TGG + chr3.2:59200498-59200517 MS.gene049627:intron 20.0%
!!! AAAATTTATGAGCTTTCTTT+TGG - chr3.2:59200499-59200518 None:intergenic 20.0%
!!! AAAGAAAGCTCATAAATTTT+GGG + chr3.2:59200499-59200518 MS.gene049627:intron 20.0%
!!! AGTCTTTTCTATCTTTTATT+TGG - chr3.2:59202098-59202117 None:intergenic 20.0%
!!! AGTTAAAAAAAAAGCTTTAG+TGG + chr3.2:59198498-59198517 MS.gene049627:intron 20.0%
!!! ATTAAGGTCGAAATTTTTTA+AGG - chr3.2:59201568-59201587 None:intergenic 20.0%
!!! ATTGGAAATTTGTTCATTTT+GGG - chr3.2:59200388-59200407 None:intergenic 20.0%
!!! ATTGTCTATTTGAAACATAA+AGG - chr3.2:59198329-59198348 None:intergenic 20.0%
!!! CTATTTTCAAAGATTTGTAT+AGG + chr3.2:59201178-59201197 MS.gene049627:intron 20.0%
!!! TCTATTCAAGCTTAATTTTA+AGG + chr3.2:59199351-59199370 MS.gene049627:intron 20.0%
!!! TGCATTTTTCAGTAATATAT+TGG + chr3.2:59201429-59201448 MS.gene049627:intron 20.0%
!!! TTGAAATGCATATGAATTTT+TGG - chr3.2:59202138-59202157 None:intergenic 20.0%
!!! TTTGTTGTATTGTGTTTATT+TGG - chr3.2:59198369-59198388 None:intergenic 20.0%
! AAAATTTCACGCAAATTAGT+AGG - chr3.2:59198966-59198985 None:intergenic 25.0%
! AAAGCTTAAAAATAATGCAG+TGG - chr3.2:59198675-59198694 None:intergenic 25.0%
! AAAGCTTCCATTACATTATA+TGG - chr3.2:59200796-59200815 None:intergenic 25.0%
! AAATTTCACGCAAATTAGTA+GGG - chr3.2:59198965-59198984 None:intergenic 25.0%
! AAGTAAAACGAACTGAAATT+TGG - chr3.2:59198412-59198431 None:intergenic 25.0%
! AATTACATTTGAAGGTAGAA+GGG - chr3.2:59200560-59200579 None:intergenic 25.0%
! ACAACAAAAAAATATGCATC+AGG - chr3.2:59198999-59199018 None:intergenic 25.0%
! AGAAGTCATTTCAAAGATTA+TGG + chr3.2:59202467-59202486 MS.gene049627:CDS 25.0%
! ATAACAATGTACATTACTGA+AGG + chr3.2:59199187-59199206 MS.gene049627:intron 25.0%
! ATATCTTCATCAGATCAAAT+TGG + chr3.2:59202432-59202451 MS.gene049627:intron 25.0%
! ATTGTTCATGTTATTATGGT+TGG + chr3.2:59199421-59199440 MS.gene049627:intron 25.0%
! CTATATACGGCAAATTTATA+TGG + chr3.2:59200746-59200765 MS.gene049627:intron 25.0%
! CTATTATCAAAGATTTCCAT+AGG + chr3.2:59201244-59201263 MS.gene049627:intron 25.0%
! GAGAATAAAATAATGCTTCT+AGG - chr3.2:59199694-59199713 None:intergenic 25.0%
! GTTACATGATAACCAAAAAA+TGG - chr3.2:59199749-59199768 None:intergenic 25.0%
! TAAACGAAGTTAATTGGAAA+GGG - chr3.2:59200273-59200292 None:intergenic 25.0%
! TAAATACCAAAATGATAAGG+AGG + chr3.2:59202652-59202671 MS.gene049627:CDS 25.0%
! TATTGGTATATAGTATCCTT+TGG + chr3.2:59201446-59201465 MS.gene049627:intron 25.0%
! TCATCCAACAAGAAAAAAAT+GGG - chr3.2:59198021-59198040 None:intergenic 25.0%
! TCGCCTTTATTATTTATAAC+TGG + chr3.2:59198222-59198241 MS.gene049627:intron 25.0%
! TGAATTGAATATGTTAGGTA+TGG - chr3.2:59201924-59201943 None:intergenic 25.0%
! TGATAATCATTAACTGCAAA+TGG - chr3.2:59199986-59200005 None:intergenic 25.0%
! TGCTAAATACCAAAATGATA+AGG + chr3.2:59202649-59202668 MS.gene049627:CDS 25.0%
! TGGTATTTAGCAATATTCAT+TGG - chr3.2:59202641-59202660 None:intergenic 25.0%
! TGTACAATACTGTCTATATA+CGG + chr3.2:59200733-59200752 MS.gene049627:intron 25.0%
! TTCAATATGAAAATGCAGAA+TGG - chr3.2:59200194-59200213 None:intergenic 25.0%
!! AATGTGACCTTGTTTATATT+TGG + chr3.2:59199840-59199859 MS.gene049627:intron 25.0%
!! ACCTTGTTTATATTTGGATA+GGG + chr3.2:59199846-59199865 MS.gene049627:intron 25.0%
!! AGCTATTTCATATATACACA+TGG + chr3.2:59202157-59202176 MS.gene049627:intron 25.0%
!! CTTTAAAAGTTGAACTTTGT+AGG - chr3.2:59201899-59201918 None:intergenic 25.0%
!! TCTTTGAAAATAGAAAATGG+AGG - chr3.2:59201171-59201190 None:intergenic 25.0%
!! TTACATATCTGCTTTATTAG+CGG + chr3.2:59199305-59199324 MS.gene049627:intron 25.0%
!!! AATCTTTGAAATGACTTCTT+CGG - chr3.2:59202466-59202485 None:intergenic 25.0%
!!! AGGATAAGTTCTAAACTTTA+AGG + chr3.2:59200026-59200045 MS.gene049627:intron 25.0%
!!! ATCTGTGGTTTTAAGAATTT+AGG + chr3.2:59198095-59198114 MS.gene049627:intron 25.0%
!!! ATTCTTTTATTTGCTTCCTA+TGG - chr3.2:59201263-59201282 None:intergenic 25.0%
!!! CATTGGAAATTTGTTCATTT+TGG - chr3.2:59200389-59200408 None:intergenic 25.0%
!!! CTTTTCTATCTTTTATTTGG+AGG - chr3.2:59202095-59202114 None:intergenic 25.0%
!!! GAATGCTTTTGAAAGATTTA+AGG + chr3.2:59199061-59199080 MS.gene049627:CDS 25.0%
!!! TTTGTTCATTTTGGGAAAAT+AGG - chr3.2:59200380-59200399 None:intergenic 25.0%
!!! TTTTGTTTCAGAAACAACAT+GGG + chr3.2:59201507-59201526 MS.gene049627:intron 25.0%
!!! TTTTTATGCTTTTTGGATGT+TGG - chr3.2:59202072-59202091 None:intergenic 25.0%
AAAGTGAGTGTAAATTAGCA+AGG - chr3.2:59198295-59198314 None:intergenic 30.0%
AAATGTCAGATTCAACATAC+AGG - chr3.2:59202732-59202751 None:intergenic 30.0%
AATCATTTATTTAACAGGGC+TGG - chr3.2:59199404-59199423 None:intergenic 30.0%
AATGTCAGATTCAACATACA+GGG - chr3.2:59202731-59202750 None:intergenic 30.0%
AATTTCACGCAAATTAGTAG+GGG - chr3.2:59198964-59198983 None:intergenic 30.0%
ACAATGAATAAGCTCAAATG+TGG - chr3.2:59200705-59200724 None:intergenic 30.0%
ACATGACATGTTAATGAGTT+TGG + chr3.2:59200899-59200918 MS.gene049627:intron 30.0%
ACCAGTACCATATAATGTAA+TGG + chr3.2:59200786-59200805 MS.gene049627:intron 30.0%
AGCAAGGTTGAGAAAAAAAT+AGG - chr3.2:59198848-59198867 None:intergenic 30.0%
ATGTATAACTAGTCATCATG+TGG + chr3.2:59198771-59198790 MS.gene049627:intron 30.0%
ATGTTAATGAGTTTGGCAAA+TGG + chr3.2:59200906-59200925 MS.gene049627:intron 30.0%
CAAAATAATCCATTTGACAG+TGG + chr3.2:59197745-59197764 MS.gene049627:CDS 30.0%
CATCTTTAACATTGATGTCT+GGG - chr3.2:59197939-59197958 None:intergenic 30.0%
CCTGATGTTAAACAACAATT+TGG + chr3.2:59201591-59201610 MS.gene049627:CDS 30.0%
CTACATGTGCAATTTATAAG+TGG + chr3.2:59198047-59198066 MS.gene049627:intron 30.0%
CTTCCATGCTTGTATTATTT+GGG + chr3.2:59198800-59198819 MS.gene049627:intron 30.0%
GAATTACATTTGAAGGTAGA+AGG - chr3.2:59200561-59200580 None:intergenic 30.0%
GTAAACGAAGTTAATTGGAA+AGG - chr3.2:59200274-59200293 None:intergenic 30.0%
GTCATCCAACAAGAAAAAAA+TGG - chr3.2:59198022-59198041 None:intergenic 30.0%
GTTAGAAAATAAGGAGAATG+TGG - chr3.2:59202402-59202421 None:intergenic 30.0%
GTTTAACATCAGGACTATTA+AGG - chr3.2:59201584-59201603 None:intergenic 30.0%
TAAGCTTGAATAGATGTATC+AGG - chr3.2:59199345-59199364 None:intergenic 30.0%
TATGAATCTCTATAAGCCAA+AGG - chr3.2:59201465-59201484 None:intergenic 30.0%
TATGACATTATTTCAACCCA+GGG - chr3.2:59199653-59199672 None:intergenic 30.0%
TATTCTCCGATTGACATTAT+AGG + chr3.2:59199707-59199726 MS.gene049627:intron 30.0%
TCATCTTTAACATTGATGTC+TGG - chr3.2:59197940-59197959 None:intergenic 30.0%
TCATGGCAATAAAGATTTCT+CGG - chr3.2:59198594-59198613 None:intergenic 30.0%
TCCATTACATTATATGGTAC+TGG - chr3.2:59200790-59200809 None:intergenic 30.0%
TCCCTATCCAAATATAAACA+AGG - chr3.2:59199850-59199869 None:intergenic 30.0%
TGGATGTAAACGAAGTTAAT+TGG - chr3.2:59200279-59200298 None:intergenic 30.0%
TTATCCTCATTCACTACAAA+TGG - chr3.2:59200013-59200032 None:intergenic 30.0%
TTATGACATTATTTCAACCC+AGG - chr3.2:59199654-59199673 None:intergenic 30.0%
TTGAGTACTTGTAGAATTAG+CGG - chr3.2:59197833-59197852 None:intergenic 30.0%
TTTAACTGTTAACCATTGAG+TGG + chr3.2:59200330-59200349 MS.gene049627:intron 30.0%
TTTCTTCCTCTTTACATTTC+AGG + chr3.2:59202749-59202768 MS.gene049627:intron 30.0%
! AAAACAGTTGATGCCTATTT+AGG - chr3.2:59198738-59198757 None:intergenic 30.0%
! AAACAGTTGATGCCTATTTA+GGG - chr3.2:59198737-59198756 None:intergenic 30.0%
! AAACCTAACACGCTATATTT+TGG - chr3.2:59200299-59200318 None:intergenic 30.0%
! AAGAATTCAAACAGAAGCAT+TGG - chr3.2:59200250-59200269 None:intergenic 30.0%
! GACCTTGTTTATATTTGGAT+AGG + chr3.2:59199845-59199864 MS.gene049627:intron 30.0%
! GATCAATTTGTTCATGCTTT+AGG + chr3.2:59201670-59201689 MS.gene049627:intron 30.0%
! TTAAACAATTTTCTTGCCTC+TGG + chr3.2:59200583-59200602 MS.gene049627:intron 30.0%
! TTATTAGTTTAGTACGTTCG+TGG + chr3.2:59200662-59200681 MS.gene049627:intron 30.0%
! TTGGAGGTTTTTATGCTTTT+TGG - chr3.2:59202079-59202098 None:intergenic 30.0%
! TTTAACTACCCGTTACTTTA+TGG - chr3.2:59202261-59202280 None:intergenic 30.0%
! TTTTCCATTTGTAGTGAATG+AGG + chr3.2:59200006-59200025 MS.gene049627:intron 30.0%
!! ATCTTTGAAATGACTTCTTC+GGG - chr3.2:59202465-59202484 None:intergenic 30.0%
!! CCAAATTGTTGTTTAACATC+AGG - chr3.2:59201594-59201613 None:intergenic 30.0%
!! CTTTTGTTTCAGAAACAACA+TGG + chr3.2:59201506-59201525 MS.gene049627:intron 30.0%
!! GATTATTTTGCGTATTCATC+TGG - chr3.2:59197735-59197754 None:intergenic 30.0%
!! GTTTCTGAAACAAAAGATGT+AGG - chr3.2:59201502-59201521 None:intergenic 30.0%
!!! AATAAAGGCGAATGGTTTTT+TGG - chr3.2:59198213-59198232 None:intergenic 30.0%
!!! AGTTTTTTATCCACCTGTAA+TGG + chr3.2:59198899-59198918 MS.gene049627:intron 30.0%
!!! TGTACGTTACCTGATTTTTT+GGG - chr3.2:59197982-59198001 None:intergenic 30.0%
!!! TTGTACGTTACCTGATTTTT+TGG - chr3.2:59197983-59198002 None:intergenic 30.0%
AAAACCACAGATACATCTCT+TGG - chr3.2:59198087-59198106 None:intergenic 35.0%
AAAAGATGTAGGAGAAAGAG+TGG - chr3.2:59201491-59201510 None:intergenic 35.0%
AAAATTAGGAGTGACAACAC+AGG + chr3.2:59198459-59198478 MS.gene049627:intron 35.0%
AAGAGTGAACCCAAAAAATC+AGG + chr3.2:59197970-59197989 MS.gene049627:CDS 35.0%
ACCAAAATGATAAGGAGGTA+TGG + chr3.2:59202657-59202676 MS.gene049627:intron 35.0%
ATGATACTCTACATTGGACT+TGG + chr3.2:59200160-59200179 MS.gene049627:intron 35.0%
ATGGAGCATAAGATCATTGA+TGG - chr3.2:59201047-59201066 None:intergenic 35.0%
ATGTAAACTTACCATTGTCC+TGG + chr3.2:59199490-59199509 MS.gene049627:intron 35.0%
ATGTCAGATTCAACATACAG+GGG - chr3.2:59202730-59202749 None:intergenic 35.0%
ATGTGGAAAGATTCATACCT+AGG - chr3.2:59202385-59202404 None:intergenic 35.0%
CATCCAAAATATAGCGTGTT+AGG + chr3.2:59200293-59200312 MS.gene049627:intron 35.0%
CATCCCAAATAATACAAGCA+TGG - chr3.2:59198806-59198825 None:intergenic 35.0%
CCTAATCTATATCCTATCAC+AGG - chr3.2:59199534-59199553 None:intergenic 35.0%
CCTGTGATAGGATATAGATT+AGG + chr3.2:59199531-59199550 MS.gene049627:intron 35.0%
CGGATACCATAATTATCCAA+CGG - chr3.2:59201746-59201765 None:intergenic 35.0%
GATACCATAATTATCCAACG+GGG - chr3.2:59201744-59201763 None:intergenic 35.0%
GCTTCCATGCTTGTATTATT+TGG + chr3.2:59198799-59198818 MS.gene049627:intron 35.0%
GGACTGAAAATCTCTAATCA+GGG - chr3.2:59199632-59199651 None:intergenic 35.0%
GGATACCATAATTATCCAAC+GGG - chr3.2:59201745-59201764 None:intergenic 35.0%
TAACAGTAAGTTGCCATTAC+AGG - chr3.2:59198915-59198934 None:intergenic 35.0%
TACAGGTGGATAAAAAACTG+TGG - chr3.2:59198898-59198917 None:intergenic 35.0%
TACTGTCATCAGCAATTCTA+AGG - chr3.2:59200118-59200137 None:intergenic 35.0%
TAGGATGTTCTCATTGAACA+TGG - chr3.2:59198555-59198574 None:intergenic 35.0%
TGAGTACTTGTAGAATTAGC+GGG - chr3.2:59197832-59197851 None:intergenic 35.0%
TGAGTGTAAATTAGCAAGGT+GGG - chr3.2:59198291-59198310 None:intergenic 35.0%
TGTCCGTATCCATAAAGTAA+CGG + chr3.2:59202249-59202268 MS.gene049627:intron 35.0%
TGTGGAAAGATTCATACCTA+GGG - chr3.2:59202384-59202403 None:intergenic 35.0%
TTAACATTGTGTAGAACCAG+AGG - chr3.2:59200602-59200621 None:intergenic 35.0%
TTACTGAAGGCTTCTCAAAA+TGG + chr3.2:59199200-59199219 MS.gene049627:intron 35.0%
TTACTTTATGGATACGGACA+CGG - chr3.2:59202249-59202268 None:intergenic 35.0%
! AAATCTCTAATCAGGGTGTT+AGG - chr3.2:59199625-59199644 None:intergenic 35.0%
! ACCATACCTCCTTATCATTT+TGG - chr3.2:59202661-59202680 None:intergenic 35.0%
! AGTCCAATGTAGAGTATCAT+AGG - chr3.2:59200160-59200179 None:intergenic 35.0%
! ATTAGAGATTTTCAGTCCCT+GGG + chr3.2:59199634-59199653 MS.gene049627:intron 35.0%
! CATGCTTTAGGTATGTCAAT+GGG + chr3.2:59201682-59201701 MS.gene049627:intron 35.0%
! GACTCTGAAGATACAATACA+AGG - chr3.2:59201016-59201035 None:intergenic 35.0%
! GAGCTTTCTTTTGGATAACA+AGG - chr3.2:59200490-59200509 None:intergenic 35.0%
! GATAGGGAAATCAGTCTTAT+CGG + chr3.2:59199862-59199881 MS.gene049627:intron 35.0%
! TACCCGTTACTTTATGGATA+CGG - chr3.2:59202255-59202274 None:intergenic 35.0%
! TCATGCTTTAGGTATGTCAA+TGG + chr3.2:59201681-59201700 MS.gene049627:intron 35.0%
!! ACCAAATCATCAAAAGTACC+AGG - chr3.2:59199511-59199530 None:intergenic 35.0%
!! ATTTTGGGAAAATAGGAACC+AGG - chr3.2:59200373-59200392 None:intergenic 35.0%
!! GGATGCTTTAGAGAAAATGA+TGG + chr3.2:59199886-59199905 MS.gene049627:CDS 35.0%
!! TCCTGGTACTTTTGATGATT+TGG + chr3.2:59199507-59199526 MS.gene049627:intron 35.0%
!! TCTAGGATTTTGAAAAGCCA+TGG - chr3.2:59202508-59202527 None:intergenic 35.0%
!! TGCTTTAGAGAAAATGATGG+AGG + chr3.2:59199889-59199908 MS.gene049627:CDS 35.0%
!! TTTTGGGAAAATAGGAACCA+GGG - chr3.2:59200372-59200391 None:intergenic 35.0%
!!! AACAGAAGCATTGGTTTTTG+TGG - chr3.2:59200241-59200260 None:intergenic 35.0%
!!! GACTCCCATTTTTTTCTTGT+TGG + chr3.2:59198014-59198033 MS.gene049627:intron 35.0%
!!! GTTTTTTGGTCCAATGGAAA+AGG - chr3.2:59198199-59198218 None:intergenic 35.0%
!!! TACTGTTGCTGCTTTTGATA+GGG + chr3.2:59200939-59200958 MS.gene049627:intron 35.0%
AAAATATCTGAGCTCTTCCC+CGG + chr3.2:59202789-59202808 MS.gene049627:CDS 40.0%
AAACCATCTTCTGCACAGTT+GGG - chr3.2:59199916-59199935 None:intergenic 40.0%
AAGCTGCGAGATAGTATTCA+TGG - chr3.2:59198611-59198630 None:intergenic 40.0%
AATAAAGATTTCTCGGTGGG+TGG - chr3.2:59198587-59198606 None:intergenic 40.0%
AATCGCCAAAACCTTGGTTA+GGG - chr3.2:59199232-59199251 None:intergenic 40.0%
ACAAGCTTTCAAGACCATGA+TGG + chr3.2:59197708-59197727 MS.gene049627:CDS 40.0%
ATAAAGATTTCTCGGTGGGT+GGG - chr3.2:59198586-59198605 None:intergenic 40.0%
ATACCCGTTTATTATACCCG+CGG + chr3.2:59202280-59202299 MS.gene049627:intron 40.0%
ATAGATGTATCAGGCTACAC+AGG - chr3.2:59199336-59199355 None:intergenic 40.0%
ATCTCTATACGGGTAATCCA+CGG + chr3.2:59201791-59201810 MS.gene049627:intron 40.0%
ATGATAGCTGCTTGAACTCT+AGG - chr3.2:59202525-59202544 None:intergenic 40.0%
CAAGCTTTCAAGACCATGAT+GGG + chr3.2:59197709-59197728 MS.gene049627:CDS 40.0%
CAGGTCTAAATACATGCATC+AGG - chr3.2:59201330-59201349 None:intergenic 40.0%
CCATGACCTGAAATGTAAAG+AGG - chr3.2:59202758-59202777 None:intergenic 40.0%
CTGCAGCCTATAATGTCAAT+CGG - chr3.2:59199716-59199735 None:intergenic 40.0%
GACATGTCGTGTAAAATGTG+AGG - chr3.2:59201636-59201655 None:intergenic 40.0%
GGCAATAAAGATTTCTCGGT+GGG - chr3.2:59198590-59198609 None:intergenic 40.0%
GGGACTGAAAATCTCTAATC+AGG - chr3.2:59199633-59199652 None:intergenic 40.0%
GTATGTCAATGGGTATCCAT+GGG + chr3.2:59201692-59201711 MS.gene049627:intron 40.0%
GTCATAAATGAGCTGCTGTA+TGG + chr3.2:59199800-59199819 MS.gene049627:intron 40.0%
GTCATTCTATGTGCTACAGT+TGG + chr3.2:59201397-59201416 MS.gene049627:intron 40.0%
GTCCGTATCCATAAAGTAAC+GGG + chr3.2:59202250-59202269 MS.gene049627:intron 40.0%
GTGAGTGTAAATTAGCAAGG+TGG - chr3.2:59198292-59198311 None:intergenic 40.0%
GTGCCTATGATACTCTACAT+TGG + chr3.2:59200154-59200173 MS.gene049627:intron 40.0%
GTGGAAAGATTCATACCTAG+GGG - chr3.2:59202383-59202402 None:intergenic 40.0%
TAAACCATCTTCTGCACAGT+TGG - chr3.2:59199917-59199936 None:intergenic 40.0%
TACAAACATGCTCCACTCAA+TGG - chr3.2:59200345-59200364 None:intergenic 40.0%
TAGAGTTCAAGCAGCTATCA+TGG + chr3.2:59202524-59202543 MS.gene049627:CDS 40.0%
TAGATGTATCAGGCTACACA+GGG - chr3.2:59199335-59199354 None:intergenic 40.0%
TCGTGTTTGTCTCTTTCAAC+TGG + chr3.2:59200860-59200879 MS.gene049627:intron 40.0%
TGACGCATCAAGTTCATTCA+AGG + chr3.2:59199088-59199107 MS.gene049627:CDS 40.0%
TGGCAATAAAGATTTCTCGG+TGG - chr3.2:59198591-59198610 None:intergenic 40.0%
TGTCAGATTCAACATACAGG+GGG - chr3.2:59202729-59202748 None:intergenic 40.0%
TGTTTCAGAAACAACATGGG+TGG + chr3.2:59201510-59201529 MS.gene049627:intron 40.0%
! ACATTTTTCTGCGATGCATC+AGG - chr3.2:59201298-59201317 None:intergenic 40.0%
! ATTTTCATCAAGCGACTGTG+TGG - chr3.2:59200419-59200438 None:intergenic 40.0%
! CCTCTTTACATTTCAGGTCA+TGG + chr3.2:59202755-59202774 MS.gene049627:intron 40.0%
! GATTAGAGATTTTCAGTCCC+TGG + chr3.2:59199633-59199652 MS.gene049627:intron 40.0%
! TCAAGTTGTTGACGATACTC+AGG - chr3.2:59200977-59200996 None:intergenic 40.0%
! TCATAGGCACTGTTTGTACT+TGG - chr3.2:59200144-59200163 None:intergenic 40.0%
! TCTAGTTTGTCACAGGATAC+TGG - chr3.2:59198707-59198726 None:intergenic 40.0%
!! CATCAAAAGTACCAGGACAA+TGG - chr3.2:59199504-59199523 None:intergenic 40.0%
!! GATGCTTCTACTTTTGTTGC+AGG - chr3.2:59197910-59197929 None:intergenic 40.0%
!! TGATGATTTGGTCCTGTGAT+AGG + chr3.2:59199519-59199538 MS.gene049627:intron 40.0%
!!! CACGACATGTCTTTTTTGAG+AGG + chr3.2:59201645-59201664 MS.gene049627:intron 40.0%
!!! CGAATGGTTTTTTGGTCCAA+TGG - chr3.2:59198205-59198224 None:intergenic 40.0%
!!! GACATGTCTTTTTTGAGAGG+TGG + chr3.2:59201648-59201667 MS.gene049627:intron 40.0%
!!! GTACTGTTGCTGCTTTTGAT+AGG + chr3.2:59200938-59200957 MS.gene049627:intron 40.0%
AAATATCTGAGCTCTTCCCC+GGG + chr3.2:59202790-59202809 MS.gene049627:CDS 45.0%
ACCACAGATACATCTCTTGG+TGG - chr3.2:59198084-59198103 None:intergenic 45.0%
ACCATAATTATCCAACGGGG+CGG - chr3.2:59201741-59201760 None:intergenic 45.0%
AGGTATGTCTACTGTGACAG+TGG - chr3.2:59197890-59197909 None:intergenic 45.0%
AGTGACAACACAGGCTTAAG+TGG + chr3.2:59198468-59198487 MS.gene049627:intron 45.0%
ATAAAATCCGTCATGGGCAC+GGG - chr3.2:59202326-59202345 None:intergenic 45.0%
ATCGCCAAAACCTTGGTTAG+GGG - chr3.2:59199231-59199250 None:intergenic 45.0%
CACGGGTATTTAGATACCCA+CGG + chr3.2:59201809-59201828 MS.gene049627:intron 45.0%
CAGTAAGTTGCCATTACAGG+TGG - chr3.2:59198912-59198931 None:intergenic 45.0%
CCGTGGATAAAATCCGTCAT+GGG - chr3.2:59202332-59202351 None:intergenic 45.0%
CTGTTGCAGCTATTTACCTG+AGG + chr3.2:59200524-59200543 MS.gene049627:intron 45.0%
GAAAGATTCATACCTAGGGG+TGG - chr3.2:59202380-59202399 None:intergenic 45.0%
GAATCGCCAAAACCTTGGTT+AGG - chr3.2:59199233-59199252 None:intergenic 45.0%
GACTGTGTGGCAAAACACAT+TGG - chr3.2:59200406-59200425 None:intergenic 45.0%
GATAAAATCCGTCATGGGCA+CGG - chr3.2:59202327-59202346 None:intergenic 45.0%
GCTATTTACCTGAGGAGATG+AGG + chr3.2:59200532-59200551 MS.gene049627:intron 45.0%
GGTATGTCAATGGGTATCCA+TGG + chr3.2:59201691-59201710 MS.gene049627:intron 45.0%
GTAACGTACAATCTCTGCTC+AGG + chr3.2:59197992-59198011 MS.gene049627:intron 45.0%
GTACCCGCGGGTATAATAAA+CGG - chr3.2:59202287-59202306 None:intergenic 45.0%
TAACATTGATGTCTGGGCCT+GGG - chr3.2:59197933-59197952 None:intergenic 45.0%
TACCCGCGGGTATAATAAAC+GGG - chr3.2:59202286-59202305 None:intergenic 45.0%
TACCCGTTTATTATACCCGC+GGG + chr3.2:59202281-59202300 MS.gene049627:intron 45.0%
TAGATACCCACGGATATTCG+CGG + chr3.2:59201819-59201838 MS.gene049627:intron 45.0%
TATCATACTACCCGTACCCA+TGG - chr3.2:59201711-59201730 None:intergenic 45.0%
TCAATGGGTATCCATGGGTA+CGG + chr3.2:59201697-59201716 MS.gene049627:intron 45.0%
TCCACCAAGAGATGTATCTG+TGG + chr3.2:59198080-59198099 MS.gene049627:intron 45.0%
TCCGTGGATAAAATCCGTCA+TGG - chr3.2:59202333-59202352 None:intergenic 45.0%
TCTCTATACGGGTAATCCAC+GGG + chr3.2:59201792-59201811 MS.gene049627:intron 45.0%
TGAAAAGCCATGGCAACATC+AGG - chr3.2:59202498-59202517 None:intergenic 45.0%
TGAATGGGACAGTCGAATGA+TGG + chr3.2:59201539-59201558 MS.gene049627:CDS 45.0%
TTAACATTGATGTCTGGGCC+TGG - chr3.2:59197934-59197953 None:intergenic 45.0%
TTACGTGCAGATTGAGAACC+CGG - chr3.2:59199257-59199276 None:intergenic 45.0%
TTCTGCTGCACAGTTTCTTC+TGG - chr3.2:59199044-59199063 None:intergenic 45.0%
! AGCACTCTCTAGTTTGTCAC+AGG - chr3.2:59198714-59198733 None:intergenic 45.0%
! AGGGAAATCAGTCTTATCGG+TGG + chr3.2:59199865-59199884 MS.gene049627:intron 45.0%
! ATTTTATCCACGGATACCCG+CGG + chr3.2:59202339-59202358 MS.gene049627:intron 45.0%
!! ACAAAAGTAGAAGCATCCCC+AGG + chr3.2:59197913-59197932 MS.gene049627:CDS 45.0%
!! CTAGAGAGTGCTCCCTAAAT+AGG + chr3.2:59198722-59198741 MS.gene049627:intron 45.0%
!! GAAAAGGCACCACTGTCAAA+TGG - chr3.2:59197757-59197776 None:intergenic 45.0%
!!! CCCATGACGGATTTTATCCA+CGG + chr3.2:59202329-59202348 MS.gene049627:intron 45.0%
!!! TAATTTAATTGATTTATTAA+CGG + chr3.2:59202189-59202208 MS.gene049627:intron 5.0%
AAAGGGGAAAGGAGATCCAG+GGG - chr3.2:59197779-59197798 None:intergenic 50.0%
AAATTAGCAGCCCTCGTGTG+AGG - chr3.2:59198135-59198154 None:intergenic 50.0%
AACATTGATGTCTGGGCCTG+GGG - chr3.2:59197932-59197951 None:intergenic 50.0%
AATATCTGAGCTCTTCCCCG+GGG + chr3.2:59202791-59202810 MS.gene049627:CDS 50.0%
AATTAGCAGCCCTCGTGTGA+GGG - chr3.2:59198134-59198153 None:intergenic 50.0%
AGAGATACTCGCACGGGTAT+GGG - chr3.2:59201777-59201796 None:intergenic 50.0%
AGATACCCACGGATATTCGC+GGG + chr3.2:59201820-59201839 MS.gene049627:intron 50.0%
AGCCATGGCAACATCAGGAT+TGG - chr3.2:59202493-59202512 None:intergenic 50.0%
CAATGGGTATCCATGGGTAC+GGG + chr3.2:59201698-59201717 MS.gene049627:intron 50.0%
CATAATTATCCAACGGGGCG+GGG - chr3.2:59201739-59201758 None:intergenic 50.0%
CCATAATTATCCAACGGGGC+GGG - chr3.2:59201740-59201759 None:intergenic 50.0%
CCCGTATAGAGATACTCGCA+CGG - chr3.2:59201784-59201803 None:intergenic 50.0%
CCCGTGCGAGTATCTCTATA+CGG + chr3.2:59201780-59201799 MS.gene049627:intron 50.0%
CCGTATAGAGATACTCGCAC+GGG - chr3.2:59201783-59201802 None:intergenic 50.0%
CCGTGCGAGTATCTCTATAC+GGG + chr3.2:59201781-59201800 MS.gene049627:intron 50.0%
CGTATTCATCTGGCCCATCA+TGG - chr3.2:59197725-59197744 None:intergenic 50.0%
CGTGGGTATCTAAATACCCG+TGG - chr3.2:59201811-59201830 None:intergenic 50.0%
GAAAGGAGATCCAGGGGAAA+AGG - chr3.2:59197773-59197792 None:intergenic 50.0%
GAAAGGGGAAAGGAGATCCA+GGG - chr3.2:59197780-59197799 None:intergenic 50.0%
GAGCATGTTTGTACTCTCCC+TGG + chr3.2:59200352-59200371 MS.gene049627:intron 50.0%
TAAAATCCGTCATGGGCACG+GGG - chr3.2:59202325-59202344 None:intergenic 50.0%
TAGAGATACTCGCACGGGTA+TGG - chr3.2:59201778-59201797 None:intergenic 50.0%
TCGCCAAAACCTTGGTTAGG+GGG - chr3.2:59199230-59199249 None:intergenic 50.0%
TTCCAATGCCTACACCACCA+GGG + chr3.2:59197797-59197816 MS.gene049627:CDS 50.0%
TTGCTTGCACGCTATCATGC+TGG + chr3.2:59198863-59198882 MS.gene049627:intron 50.0%
TTTCCAATGCCTACACCACC+AGG + chr3.2:59197796-59197815 MS.gene049627:CDS 50.0%
! AGCATGATAGCGTGCAAGCA+AGG - chr3.2:59198864-59198883 None:intergenic 50.0%
! CAAGTGCGCACCTTTTCCAT+TGG + chr3.2:59198186-59198205 MS.gene049627:intron 50.0%
! TTAACGGGTACGAATACCCG+CGG + chr3.2:59202205-59202224 MS.gene049627:intron 50.0%
! TTTTATCCACGGATACCCGC+GGG + chr3.2:59202340-59202359 MS.gene049627:intron 50.0%
!! ACATGGGTGGAAGCACTGAA+TGG + chr3.2:59201523-59201542 MS.gene049627:CDS 50.0%
!! CAAGGTTTTGGCGATTCTCC+GGG + chr3.2:59199236-59199255 MS.gene049627:CDS 50.0%
!! CATGGGTGGAAGCACTGAAT+GGG + chr3.2:59201524-59201543 MS.gene049627:CDS 50.0%
!! CCAAGGTTTTGGCGATTCTC+CGG + chr3.2:59199235-59199254 MS.gene049627:CDS 50.0%
!! CGGTGGGTGGGTTTACTTTT+AGG - chr3.2:59198574-59198593 None:intergenic 50.0%
!! GGTGGTGTAGGCATTGGAAA+GGG - chr3.2:59197796-59197815 None:intergenic 50.0%
!! GTAGGCATTGGAAAGGGGAA+AGG - chr3.2:59197790-59197809 None:intergenic 50.0%
!! GTGGTGTAGGCATTGGAAAG+GGG - chr3.2:59197795-59197814 None:intergenic 50.0%
!! TGGTGGTGTAGGCATTGGAA+AGG - chr3.2:59197797-59197816 None:intergenic 50.0%
!!! CGGATTTTTTTGCCACCCCT+AGG + chr3.2:59202365-59202384 MS.gene049627:intron 50.0%
AATGGAGCTCCCCCTAACCA+AGG + chr3.2:59199218-59199237 MS.gene049627:CDS 55.0%
ATTAGCAGCCCTCGTGTGAG+GGG - chr3.2:59198133-59198152 None:intergenic 55.0%
CCCGCCCCGTTGGATAATTA+TGG + chr3.2:59201737-59201756 MS.gene049627:intron 55.0%
CCGGAGAATCGCCAAAACCT+TGG - chr3.2:59199238-59199257 None:intergenic 55.0%
GAAGGGTTCCTCATCTCCTC+AGG - chr3.2:59200543-59200562 None:intergenic 55.0%
GAGATACTCGCACGGGTATG+GGG - chr3.2:59201776-59201795 None:intergenic 55.0%
GCAAAAAAATCCGTGCCCGC+GGG - chr3.2:59202358-59202377 None:intergenic 55.0%
GGAAAGGGGAAAGGAGATCC+AGG - chr3.2:59197781-59197800 None:intergenic 55.0%
GGACCCAACTGTGCAGAAGA+TGG + chr3.2:59199910-59199929 MS.gene049627:CDS 55.0%
GGCAAAAAAATCCGTGCCCG+CGG - chr3.2:59202359-59202378 None:intergenic 55.0%
GGCCAATCCTGATGTTGCCA+TGG + chr3.2:59202488-59202507 MS.gene049627:CDS 55.0%
GGTAGGTAAATGGGTACCCG+CGG - chr3.2:59202300-59202319 None:intergenic 55.0%
GTAGGTAAATGGGTACCCGC+GGG - chr3.2:59202299-59202318 None:intergenic 55.0%
TTCGATGATACCCGTACCCG+CGG - chr3.2:59202225-59202244 None:intergenic 55.0%
! GCTCCCCCTAACCAAGGTTT+TGG + chr3.2:59199224-59199243 MS.gene049627:CDS 55.0%
! GTAGAATTAGCGGGTGCAGC+AGG - chr3.2:59197823-59197842 None:intergenic 55.0%
! TAACGGGTACGAATACCCGC+GGG + chr3.2:59202206-59202225 MS.gene049627:intron 55.0%
ATTATCCAACGGGGCGGGGA+CGG - chr3.2:59201735-59201754 None:intergenic 60.0%
CACGGGGCGGGTAGGTAAAT+GGG - chr3.2:59202309-59202328 None:intergenic 60.0%
CGGATATTCGCGGGTACCCA+TGG + chr3.2:59201829-59201848 MS.gene049627:intron 60.0%
GGGTACCCGCGAATATCCGT+GGG - chr3.2:59201828-59201847 None:intergenic 60.0%
GGTACGAATACCCGCGGGTA+CGG + chr3.2:59202211-59202230 MS.gene049627:intron 60.0%
GTACGAATACCCGCGGGTAC+GGG + chr3.2:59202212-59202231 MS.gene049627:intron 60.0%
TACTCGCACGGGTATGGGGA+CGG - chr3.2:59201772-59201791 None:intergenic 60.0%
TCGATGATACCCGTACCCGC+GGG - chr3.2:59202224-59202243 None:intergenic 60.0%
TGGGTACCCGCGAATATCCG+TGG - chr3.2:59201829-59201848 None:intergenic 60.0%
TTAGCAGCCCTCGTGTGAGG+GGG - chr3.2:59198132-59198151 None:intergenic 60.0%
! GACAGTGGTGCCTTTTCCCC+TGG + chr3.2:59197760-59197779 MS.gene049627:CDS 60.0%
AAGCCATGCCCCCTCACACG+AGG + chr3.2:59198121-59198140 MS.gene049627:intron 65.0%
AATCCGTCATGGGCACGGGG+CGG - chr3.2:59202322-59202341 None:intergenic 65.0%
ACTCGCACGGGTATGGGGAC+GGG - chr3.2:59201771-59201790 None:intergenic 65.0%
AGCCATGCCCCCTCACACGA+GGG + chr3.2:59198122-59198141 MS.gene049627:intron 65.0%
GCACGGGGCGGGTAGGTAAA+TGG - chr3.2:59202310-59202329 None:intergenic 65.0%
! GGCCCTGGTGGTGTAGGCAT+TGG - chr3.2:59197802-59197821 None:intergenic 65.0%
!! TCAAGGCTGGCCTGACACCC+CGG - chr3.2:59202811-59202830 None:intergenic 65.0%
AGCCCTCGTGTGAGGGGGCA+TGG - chr3.2:59198127-59198146 None:intergenic 70.0%
ATCCGTCATGGGCACGGGGC+GGG - chr3.2:59202321-59202340 None:intergenic 70.0%
CACGGGTATGGGGACGGGCA+CGG - chr3.2:59201766-59201785 None:intergenic 70.0%
GATATCCGTCCCCGCCCCGT+TGG + chr3.2:59201727-59201746 MS.gene049627:intron 70.0%
TACCCGCCCCGTGCCCATGA+CGG + chr3.2:59202316-59202335 MS.gene049627:intron 70.0%
TCCACGGATACCCGCGGGCA+CGG + chr3.2:59202345-59202364 MS.gene049627:intron 70.0%
! GAGCTCTTCCCCGGGGTGTC+AGG + chr3.2:59202798-59202817 MS.gene049627:CDS 70.0%
! GCAGCAGGCCCTGGTGGTGT+AGG - chr3.2:59197808-59197827 None:intergenic 70.0%
! TTAGCGGGTGCAGCAGGCCC+TGG - chr3.2:59197817-59197836 None:intergenic 70.0%
!! AAGGCTGGCCTGACACCCCG+GGG - chr3.2:59202809-59202828 None:intergenic 70.0%
!! CAAGGCTGGCCTGACACCCC+GGG - chr3.2:59202810-59202829 None:intergenic 70.0%
GTCATGGGCACGGGGCGGGT+AGG - chr3.2:59202317-59202336 None:intergenic 75.0%
TCCGTGCCCGCGGGTATCCG+TGG - chr3.2:59202349-59202368 None:intergenic 75.0%
! GCGGGTGCAGCAGGCCCTGG+TGG - chr3.2:59197814-59197833 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 59197703 59202830 59197703 ID=MS.gene049627
chr3.2 mRNA 59197703 59202830 59197703 ID=MS.gene049627.t1;Parent=MS.gene049627
chr3.2 exon 59197703 59197991 59197703 ID=MS.gene049627.t1.exon1;Parent=MS.gene049627.t1
chr3.2 CDS 59197703 59197991 59197703 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59199024 59199121 59199024 ID=MS.gene049627.t1.exon2;Parent=MS.gene049627.t1
chr3.2 CDS 59199024 59199121 59199024 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59199209 59199272 59199209 ID=MS.gene049627.t1.exon3;Parent=MS.gene049627.t1
chr3.2 CDS 59199209 59199272 59199209 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59199867 59199939 59199867 ID=MS.gene049627.t1.exon4;Parent=MS.gene049627.t1
chr3.2 CDS 59199867 59199939 59199867 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59200533 59200573 59200533 ID=MS.gene049627.t1.exon5;Parent=MS.gene049627.t1
chr3.2 CDS 59200533 59200573 59200533 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59200960 59201005 59200960 ID=MS.gene049627.t1.exon6;Parent=MS.gene049627.t1
chr3.2 CDS 59200960 59201005 59200960 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59201518 59201612 59201518 ID=MS.gene049627.t1.exon7;Parent=MS.gene049627.t1
chr3.2 CDS 59201518 59201612 59201518 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59202445 59202548 59202445 ID=MS.gene049627.t1.exon8;Parent=MS.gene049627.t1
chr3.2 CDS 59202445 59202548 59202445 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59202626 59202673 59202626 ID=MS.gene049627.t1.exon9;Parent=MS.gene049627.t1
chr3.2 CDS 59202626 59202673 59202626 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2 exon 59202771 59202830 59202771 ID=MS.gene049627.t1.exon10;Parent=MS.gene049627.t1
chr3.2 CDS 59202771 59202830 59202771 ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
Gene Sequence

>MS.gene049627

ATGCAACAAGCTTTCAAGACCATGATGGGCCAGATGAATACGCAAAATAATCCATTTGACAGTGGTGCCTTTTCCCCTGGATCTCCTTTCCCCTTTCCAATGCCTACACCACCAGGGCCTGCTGCACCCGCTAATTCTACAAGTACTCAATCACAAGCATCTTCTGCACGAACTGCATCTCAATCCACTGTCACAGTAGACATACCTGCAACAAAAGTAGAAGCATCCCCAGGCCCAGACATCAATGTTAAAGATGAAGTAGAAGTAAAGAGTGAACCCAAAAAATCAGGTAACGTACAATCTCTGCTCAGGACTCCCATTTTTTTCTTGTTGGATGACATGTACTACATGTGCAATTTATAAGTGGTGATTTTGTGTCCACCAAGAGATGTATCTGTGGTTTTAAGAATTTAGGTAAAAGCCATGCCCCCTCACACGAGGGCTGCTAATTTACACTCACCTAAAAACATGAAGATAAATTAGCAAGTGCGCACCTTTTCCATTGGACCAAAAAACCATTCGCCTTTATTATTTATAACTGGTAAATTGAGGGTTAGTTTTGTCAATTTCATTAAATTATCTACACCCACCTTGCTAATTTACACTCACTTTGTTGATGAACACCTTTATGTTTCAAATAGACAATTATAAACATTAAACAACCCAAATAAACACAATACAACAAACAATTTACAAACACTATTCACCAAATTTCAGTTCGTTTTACTTGAATGCTTGTATACTTTTTGTTTACATAAAATTAGGAGTGACAACACAGGCTTAAGTGGCTTTTCTAGTTAAAAAAAAAGCTTTAGTGGCTTTATAAGCAAAAAAAAATAAATGGGCACGCCATGTTCAATGAGAACATCCTAAAAGTAAACCCACCCACCGAGAAATCTTTATTGCCATGAATACTATCTCGCAGCTTTCTTATAGTTATGAACATATAATAGCTTTAGTGAGTTTATGCCACTGCATTATTTTTAAGCTTTGCTTGCATGCCAGTATCCTGTGACAAACTAGAGAGTGCTCCCTAAATAGGCATCAACTGTTTTAGTTTGCTGTTGAATGTATAACTAGTCATCATGTGGATTTTGCTTCCATGCTTGTATTATTTGGGATGATTCATGAGTGTGTGCAAACCTATTTTTTTCTCAACCTTGCTTGCACGCTATCATGCTGGCTAGTAGTTCCACAGTTTTTTATCCACCTGTAATGGCAACTTACTGTTATGAATTATAACAAACTATAAAGTGCACCCCTACTAATTTGCGTGAAATTTTTAAAAAAAATCCTGATGCATATTTTTTTGTTGTTGCAGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGCAGAATGCTTTTGAAAGATTTAAGGATGTTGACGCATCAAGTTCATTCAAGGAAGCAGCAGAAGTGAGTTTTTAAGATTCTTGTTTTTCCTAAAGATGTTTTGTGATTTTTCTTGCCCTTATTAAGTAATAACAATGTACATTACTGAAGGCTTCTCAAAATGGAGCTCCCCCTAACCAAGGTTTTGGCGATTCTCCGGGTTCTCAATCTGCACGTAAGTAATGTGTCAGTTGAAATTGAAAATATTTACATATCTGCTTTATTAGCGGAAAACCCTGTGTAGCCTGATACATCTATTCAAGCTTAATTTTAAGGAAATGCAATGTAACGTCACGATTTAGACCAGCCCTGTTAAATAAATGATTGTTCATGTTATTATGGTTGGATATATTGATTTAATCTTTTCATAATTGTCGAATTTATAAAGGATAATGTAAACTTACCATTGTCCTGGTACTTTTGATGATTTGGTCCTGTGATAGGATATAGATTAGGAGAGTCTCTCATATTCTATCATATTTCTTAATAGTAGTATTCTTTCTTTGAAATTAATTTCTTAGGTTCCTAACACCCTGATTAGAGATTTTCAGTCCCTGGGTTGAAATAATGTCATAAATCAAACATGAGAAATTCCTAGAAGCATTATTTTATTCTCCGATTGACATTATAGGCTGCAGTTAATTTATACCATTTTTTGGTTATCATGTAACACATTGTGTTAATATCTGTTTGTTCAAAGTTGTCATAAATGAGCTGCTGTATGGATTGACTAAATGTTCTTAATGTGACCTTGTTTATATTTGGATAGGGAAATCAGTCTTATCGGTGGATGCTTTAGAGAAAATGATGGAGGACCCAACTGTGCAGAAGATGGTTTACCCGTAATATTAGCTTCTTTTTTCTTTTAATAATGATTATCATTTTCCATTTGCAGTTAATGATTATCATTTTCCATTTGTAGTGAATGAGGATAAGTTCTAAACTTTAAGGAAATTCTAGTTTTGAATATATAAAAAAAGTTTCCATGATATTGTATAAGTATGTTGTTTAGTCTGACCTTAGAATTGCTGATGACAGTAGTACCAAGTACAAACAGTGCCTATGATACTCTACATTGGACTTGGAAGTAGTTCCATTCTGCATTTTCATATTGAACTACTTCTGAAGTTGTTACGTTTTCCACAAAAACCAATGCTTCTGTTTGAATTCTTCCCTTTCCAATTAACTTCGTTTACATCCAAAATATAGCGTGTTAGGTTTGCTGCTGCTCTTTTAACTGTTAACCATTGAGTGGAGCATGTTTGTACTCTCCCTGGTTCCTATTTTCCCAAAATGAACAAATTTCCAATGTGTTTTGCCACACAGTCGCTTGATGAAAATTTATAGATTTGCATGCTTGTTTAATGTTTACATTATTCAATTTGTTTTCCTTGTTATCCAAAAGAAAGCTCATAAATTTTGGGTACTGTTGCAGCTATTTACCTGAGGAGATGAGGAACCCTTCTACCTTCAAATGTAATTCTCTTAAACAATTTTCTTGCCTCTGGTTCTACACAATGTTAATCAAAGTTTTAAGATTCATTATAATGTGCAGACTGTAATTTTATTAGTTTAGTACGTTCGTGGAAGTAACTAATGCATGACCACATTTGAGCTTATTCATTGTTACTCACATGTACAATACTGTCTATATACGGCAAATTTATATGGGTGTCTTTTCAATCTTTACCAGTACCATATAATGTAATGGAAGCTTTTCTGTATGTTGTTTACATTAAGTTTGTTGATCAGAACTTAAACGTCGTGTTTGTCTCTTTCAACTGGTAGATTGTTAATTTTCACATGACATGTTAATGAGTTTGGCAAATGGATAGTTAATGTACTGTTGCTGCTTTTGATAGGGATGCTGCAGAATCCTGAGTATCGTCAACAACTTGAAGAAATGCTGTAAGTTCCTTGTATTGTATCTTCAGAGTCTTTTTTTTCCATCAATGATCTTATGCTCCATGTTTCCAATTATTATTACTTGTAAGAATAATAAGAGTTTGTTTGCTTTTAAGAAACCTTTTCTGTTTTCACTTTTAATTACAAACATGTTGTCTTGTCTTACCTCCATTTTCTATTTTCAAAGATTTGTATAGGAAGCAAATAAAAAAATAGAAGTTTCACTTGCAATTCTTTGAATCTATTATCAAAGATTTCCATAGGAAGCAAATAAAAGAATAGAAGTTTCAGACCTGATGCATCGCAGAAAAATGTAAACTTAGACCTGATGCATGTATTTAGACCTGATGCATCGCAGAAAAATGTAAACTTATTTTTTATTTCTCTCTCAAGTGTCATTCTATGTGCTACAGTTGGATAAATTGATGCATTTTTCAGTAATATATTGGTATATAGTATCCTTTGGCTTATAGAGATTCATACATCCACTCTTTCTCCTACATCTTTTGTTTCAGAAACAACATGGGTGGAAGCACTGAATGGGACAGTCGAATGATGGACACCTTAAAAAATTTCGACCTTAATAGTCCTGATGTTAAACAACAATTTGGTAAGTTTTATTGTTATTTACCTCACATTTTACACGACATGTCTTTTTTGAGAGGTGGATCAATTTGTTCATGCTTTAGGTATGTCAATGGGTATCCATGGGTACGGGTAGTATGATATCCGTCCCCGCCCCGTTGGATAATTATGGTATCCGTGCCCGTCCCCATACCCGTGCGAGTATCTCTATACGGGTAATCCACGGGTATTTAGATACCCACGGATATTCGCGGGTACCCATGGATATTTGATTAATTTTTTTTTACAAAAAAATACTTTTTTAATTACCTACAAAGTTCAACTTTTAAAGATCCATACCTAACATATTCAATTCAAATTTCATAATTCAACAAAAATCATGATTATTACATAATCCTAAGCAAATTCATCATACCATAATGCATATGATTCTTATATAATCCATACAAATTATTGAAGTAAAATAAAAGGATAAAAACATCCAACATCCAAAAAGCATAAAAACCTCCAAATAAAAGATAGAAAAGACTAAAATCAAAATAAACATCCAAAAATTCATATGCATTTCAAGCTATTTCATATATACACATGGATAATTTAGTAATTTAATTGATTTATTAACGGGTACGAATACCCGCGGGTACGGGTATCATCGAATCCGTGTCCGTATCCATAAAGTAACGGGTAGTTAAATACCCGTTTATTATACCCGCGGGTACCCATTTACCTACCCGCCCCGTGCCCATGACGGATTTTATCCACGGATACCCGCGGGCACGGATTTTTTTGCCACCCCTAGGTATGAATCTTTCCACATTCTCCTTATTTTCTAACATTTTACATTATATCTTCATCAGATCAAATTGGACTTTCTCCCGAAGAAGTCATTTCAAAGATTATGGCCAATCCTGATGTTGCCATGGCTTTTCAAAATCCTAGAGTTCAAGCAGCTATCATGGATGTATGTTTTAATTTAAGCTTTTGATTAATATTTCATATCAAATCTCTGATTTTTTTTGTTTTGTTTTGGTTGTGCAGTGTTCACAGAATCCAATGAATATTGCTAAATACCAAAATGATAAGGAGGTATGGTGATACTTATTTGAATTCAATTTGTCTTTCTGAGAAGCATGTTTAGCCCCCTGTATGTTGAATCTGACATTTCTTCCTCTTTACATTTCAGGTCATGGATGTCTTCAATAAAATATCTGAGCTCTTCCCCGGGGTGTCAGGCCAGCCTTGA

Protein sequence

>MS.gene049627.t1

MQQAFKTMMGQMNTQNNPFDSGAFSPGSPFPFPMPTPPGPAAPANSTSTQSQASSARTASQSTVTVDIPATKVEASPGPDINVKDEVEVKSEPKKSAFVDVSPEETVQQNAFERFKDVDASSSFKEAAEASQNGAPPNQGFGDSPGSQSARKSVLSVDALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQNPEYRQQLEEMLNNMGGSTEWDSRMMDTLKNFDLNSPDVKQQFDQIGLSPEEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMNIAKYQNDKEVMDVFNKISELFPGVSGQP