AlfalfaGEDB | MS.gene049627

M. sativa cultivar XinJiangDaYe / MS.gene049627

KEGG: -
GO: -
PFAM: PF16550.8 PF17830.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049627.t1	PNY04006.1	90.6	308	25	2	1	305	85	391	1.80E-113	419.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049627.t1	Q8GT66	91.9	309	21	2	1	305	128	436	4.4e-113	409.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049627.t1	A0A2K3NLT8	90.6	308	25	2	1	305	85	391	1.3e-113	419.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene049627	0.854292	1.36E-61	-1.69E-46
MS.gene049217	MS.gene049627	0.872733	2.53E-67	-1.69E-46
MS.gene049222	MS.gene049627	0.875364	3.27E-68	-1.69E-46
MS.gene049232	MS.gene049627	0.81793	2.55E-52	-1.69E-46
MS.gene049285	MS.gene049627	0.890147	1.28E-73	-1.69E-46
MS.gene049320	MS.gene049627	0.861281	1.15E-63	-1.69E-46
MS.gene049366	MS.gene049627	0.800404	1.46E-48	-1.69E-46
MS.gene049609	MS.gene049627	0.812637	3.83E-51	-1.69E-46
MS.gene049615	MS.gene049627	0.80054	1.37E-48	-1.69E-46
MS.gene049627	MS.gene05010	0.847888	8.69E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049627.t1	MTR_3g063200	96.104	308	9	1	1	305	128	435	0.0	604

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049627.t1	AT5G16620	59.385	325	99	6	1	303	134	447	1.34e-107	320

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Find 80 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATCTGAGCTCTTCCC+CGG	0.442345	3.2:+59202789	MS.gene049627:CDS
AAACCATCTTCTGCACAGTT+GGG	0.513822	3.2:-59199913	None:intergenic
AAAGGGGAAAGGAGATCCAG+GGG	0.729197	3.2:-59197776	None:intergenic
AAATATCTGAGCTCTTCCCC+GGG	0.513824	3.2:+59202790	MS.gene049627:CDS
AACATTGATGTCTGGGCCTG+GGG	0.470604	3.2:-59197929	None:intergenic
AAGGCTGGCCTGACACCCCG+GGG	0.676232	3.2:-59202806	None:intergenic
AATATCTGAGCTCTTCCCCG+GGG	0.732010	3.2:+59202791	MS.gene049627:CDS
AATCGCCAAAACCTTGGTTA+GGG	0.525969	3.2:-59199229	None:intergenic
AATCTTTGAAATGACTTCTT+CGG	0.305276	3.2:-59202463	None:intergenic
AATTACATTTGAAGGTAGAA+GGG	0.544985	3.2:-59200557	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGAGTGTAAATTAGCA+AGG	-	chr3.2:59198295-59198314	None:intergenic	30.0%
AAATGTCAGATTCAACATAC+AGG	-	chr3.2:59202732-59202751	None:intergenic	30.0%
AATCATTTATTTAACAGGGC+TGG	-	chr3.2:59199404-59199423	None:intergenic	30.0%
AATGTCAGATTCAACATACA+GGG	-	chr3.2:59202731-59202750	None:intergenic	30.0%
AATTTCACGCAAATTAGTAG+GGG	-	chr3.2:59198964-59198983	None:intergenic	30.0%
ACAATGAATAAGCTCAAATG+TGG	-	chr3.2:59200705-59200724	None:intergenic	30.0%
ACATGACATGTTAATGAGTT+TGG	+	chr3.2:59200899-59200918	MS.gene049627:intron	30.0%
ACCAGTACCATATAATGTAA+TGG	+	chr3.2:59200786-59200805	MS.gene049627:intron	30.0%
AGCAAGGTTGAGAAAAAAAT+AGG	-	chr3.2:59198848-59198867	None:intergenic	30.0%
ATGTATAACTAGTCATCATG+TGG	+	chr3.2:59198771-59198790	MS.gene049627:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	59197703	59202830	59197703	ID=MS.gene049627
chr3.2	mRNA	59197703	59202830	59197703	ID=MS.gene049627.t1;Parent=MS.gene049627
chr3.2	exon	59197703	59197991	59197703	ID=MS.gene049627.t1.exon1;Parent=MS.gene049627.t1
chr3.2	CDS	59197703	59197991	59197703	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59199024	59199121	59199024	ID=MS.gene049627.t1.exon2;Parent=MS.gene049627.t1
chr3.2	CDS	59199024	59199121	59199024	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59199209	59199272	59199209	ID=MS.gene049627.t1.exon3;Parent=MS.gene049627.t1
chr3.2	CDS	59199209	59199272	59199209	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59199867	59199939	59199867	ID=MS.gene049627.t1.exon4;Parent=MS.gene049627.t1
chr3.2	CDS	59199867	59199939	59199867	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59200533	59200573	59200533	ID=MS.gene049627.t1.exon5;Parent=MS.gene049627.t1
chr3.2	CDS	59200533	59200573	59200533	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59200960	59201005	59200960	ID=MS.gene049627.t1.exon6;Parent=MS.gene049627.t1
chr3.2	CDS	59200960	59201005	59200960	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59201518	59201612	59201518	ID=MS.gene049627.t1.exon7;Parent=MS.gene049627.t1
chr3.2	CDS	59201518	59201612	59201518	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59202445	59202548	59202445	ID=MS.gene049627.t1.exon8;Parent=MS.gene049627.t1
chr3.2	CDS	59202445	59202548	59202445	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59202626	59202673	59202626	ID=MS.gene049627.t1.exon9;Parent=MS.gene049627.t1
chr3.2	CDS	59202626	59202673	59202626	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1
chr3.2	exon	59202771	59202830	59202771	ID=MS.gene049627.t1.exon10;Parent=MS.gene049627.t1
chr3.2	CDS	59202771	59202830	59202771	ID=cds.MS.gene049627.t1;Parent=MS.gene049627.t1

Gene Sequence

>MS.gene049627

ATGCAACAAGCTTTCAAGACCATGATGGGCCAGATGAATACGCAAAATAATCCATTTGACAGTGGTGCCTTTTCCCCTGGATCTCCTTTCCCCTTTCCAATGCCTACACCACCAGGGCCTGCTGCACCCGCTAATTCTACAAGTACTCAATCACAAGCATCTTCTGCACGAACTGCATCTCAATCCACTGTCACAGTAGACATACCTGCAACAAAAGTAGAAGCATCCCCAGGCCCAGACATCAATGTTAAAGATGAAGTAGAAGTAAAGAGTGAACCCAAAAAATCAGGTAACGTACAATCTCTGCTCAGGACTCCCATTTTTTTCTTGTTGGATGACATGTACTACATGTGCAATTTATAAGTGGTGATTTTGTGTCCACCAAGAGATGTATCTGTGGTTTTAAGAATTTAGGTAAAAGCCATGCCCCCTCACACGAGGGCTGCTAATTTACACTCACCTAAAAACATGAAGATAAATTAGCAAGTGCGCACCTTTTCCATTGGACCAAAAAACCATTCGCCTTTATTATTTATAACTGGTAAATTGAGGGTTAGTTTTGTCAATTTCATTAAATTATCTACACCCACCTTGCTAATTTACACTCACTTTGTTGATGAACACCTTTATGTTTCAAATAGACAATTATAAACATTAAACAACCCAAATAAACACAATACAACAAACAATTTACAAACACTATTCACCAAATTTCAGTTCGTTTTACTTGAATGCTTGTATACTTTTTGTTTACATAAAATTAGGAGTGACAACACAGGCTTAAGTGGCTTTTCTAGTTAAAAAAAAAGCTTTAGTGGCTTTATAAGCAAAAAAAAATAAATGGGCACGCCATGTTCAATGAGAACATCCTAAAAGTAAACCCACCCACCGAGAAATCTTTATTGCCATGAATACTATCTCGCAGCTTTCTTATAGTTATGAACATATAATAGCTTTAGTGAGTTTATGCCACTGCATTATTTTTAAGCTTTGCTTGCATGCCAGTATCCTGTGACAAACTAGAGAGTGCTCCCTAAATAGGCATCAACTGTTTTAGTTTGCTGTTGAATGTATAACTAGTCATCATGTGGATTTTGCTTCCATGCTTGTATTATTTGGGATGATTCATGAGTGTGTGCAAACCTATTTTTTTCTCAACCTTGCTTGCACGCTATCATGCTGGCTAGTAGTTCCACAGTTTTTTATCCACCTGTAATGGCAACTTACTGTTATGAATTATAACAAACTATAAAGTGCACCCCTACTAATTTGCGTGAAATTTTTAAAAAAAATCCTGATGCATATTTTTTTGTTGTTGCAGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGCAGAATGCTTTTGAAAGATTTAAGGATGTTGACGCATCAAGTTCATTCAAGGAAGCAGCAGAAGTGAGTTTTTAAGATTCTTGTTTTTCCTAAAGATGTTTTGTGATTTTTCTTGCCCTTATTAAGTAATAACAATGTACATTACTGAAGGCTTCTCAAAATGGAGCTCCCCCTAACCAAGGTTTTGGCGATTCTCCGGGTTCTCAATCTGCACGTAAGTAATGTGTCAGTTGAAATTGAAAATATTTACATATCTGCTTTATTAGCGGAAAACCCTGTGTAGCCTGATACATCTATTCAAGCTTAATTTTAAGGAAATGCAATGTAACGTCACGATTTAGACCAGCCCTGTTAAATAAATGATTGTTCATGTTATTATGGTTGGATATATTGATTTAATCTTTTCATAATTGTCGAATTTATAAAGGATAATGTAAACTTACCATTGTCCTGGTACTTTTGATGATTTGGTCCTGTGATAGGATATAGATTAGGAGAGTCTCTCATATTCTATCATATTTCTTAATAGTAGTATTCTTTCTTTGAAATTAATTTCTTAGGTTCCTAACACCCTGATTAGAGATTTTCAGTCCCTGGGTTGAAATAATGTCATAAATCAAACATGAGAAATTCCTAGAAGCATTATTTTATTCTCCGATTGACATTATAGGCTGCAGTTAATTTATACCATTTTTTGGTTATCATGTAACACATTGTGTTAATATCTGTTTGTTCAAAGTTGTCATAAATGAGCTGCTGTATGGATTGACTAAATGTTCTTAATGTGACCTTGTTTATATTTGGATAGGGAAATCAGTCTTATCGGTGGATGCTTTAGAGAAAATGATGGAGGACCCAACTGTGCAGAAGATGGTTTACCCGTAATATTAGCTTCTTTTTTCTTTTAATAATGATTATCATTTTCCATTTGCAGTTAATGATTATCATTTTCCATTTGTAGTGAATGAGGATAAGTTCTAAACTTTAAGGAAATTCTAGTTTTGAATATATAAAAAAAGTTTCCATGATATTGTATAAGTATGTTGTTTAGTCTGACCTTAGAATTGCTGATGACAGTAGTACCAAGTACAAACAGTGCCTATGATACTCTACATTGGACTTGGAAGTAGTTCCATTCTGCATTTTCATATTGAACTACTTCTGAAGTTGTTACGTTTTCCACAAAAACCAATGCTTCTGTTTGAATTCTTCCCTTTCCAATTAACTTCGTTTACATCCAAAATATAGCGTGTTAGGTTTGCTGCTGCTCTTTTAACTGTTAACCATTGAGTGGAGCATGTTTGTACTCTCCCTGGTTCCTATTTTCCCAAAATGAACAAATTTCCAATGTGTTTTGCCACACAGTCGCTTGATGAAAATTTATAGATTTGCATGCTTGTTTAATGTTTACATTATTCAATTTGTTTTCCTTGTTATCCAAAAGAAAGCTCATAAATTTTGGGTACTGTTGCAGCTATTTACCTGAGGAGATGAGGAACCCTTCTACCTTCAAATGTAATTCTCTTAAACAATTTTCTTGCCTCTGGTTCTACACAATGTTAATCAAAGTTTTAAGATTCATTATAATGTGCAGACTGTAATTTTATTAGTTTAGTACGTTCGTGGAAGTAACTAATGCATGACCACATTTGAGCTTATTCATTGTTACTCACATGTACAATACTGTCTATATACGGCAAATTTATATGGGTGTCTTTTCAATCTTTACCAGTACCATATAATGTAATGGAAGCTTTTCTGTATGTTGTTTACATTAAGTTTGTTGATCAGAACTTAAACGTCGTGTTTGTCTCTTTCAACTGGTAGATTGTTAATTTTCACATGACATGTTAATGAGTTTGGCAAATGGATAGTTAATGTACTGTTGCTGCTTTTGATAGGGATGCTGCAGAATCCTGAGTATCGTCAACAACTTGAAGAAATGCTGTAAGTTCCTTGTATTGTATCTTCAGAGTCTTTTTTTTCCATCAATGATCTTATGCTCCATGTTTCCAATTATTATTACTTGTAAGAATAATAAGAGTTTGTTTGCTTTTAAGAAACCTTTTCTGTTTTCACTTTTAATTACAAACATGTTGTCTTGTCTTACCTCCATTTTCTATTTTCAAAGATTTGTATAGGAAGCAAATAAAAAAATAGAAGTTTCACTTGCAATTCTTTGAATCTATTATCAAAGATTTCCATAGGAAGCAAATAAAAGAATAGAAGTTTCAGACCTGATGCATCGCAGAAAAATGTAAACTTAGACCTGATGCATGTATTTAGACCTGATGCATCGCAGAAAAATGTAAACTTATTTTTTATTTCTCTCTCAAGTGTCATTCTATGTGCTACAGTTGGATAAATTGATGCATTTTTCAGTAATATATTGGTATATAGTATCCTTTGGCTTATAGAGATTCATACATCCACTCTTTCTCCTACATCTTTTGTTTCAGAAACAACATGGGTGGAAGCACTGAATGGGACAGTCGAATGATGGACACCTTAAAAAATTTCGACCTTAATAGTCCTGATGTTAAACAACAATTTGGTAAGTTTTATTGTTATTTACCTCACATTTTACACGACATGTCTTTTTTGAGAGGTGGATCAATTTGTTCATGCTTTAGGTATGTCAATGGGTATCCATGGGTACGGGTAGTATGATATCCGTCCCCGCCCCGTTGGATAATTATGGTATCCGTGCCCGTCCCCATACCCGTGCGAGTATCTCTATACGGGTAATCCACGGGTATTTAGATACCCACGGATATTCGCGGGTACCCATGGATATTTGATTAATTTTTTTTTACAAAAAAATACTTTTTTAATTACCTACAAAGTTCAACTTTTAAAGATCCATACCTAACATATTCAATTCAAATTTCATAATTCAACAAAAATCATGATTATTACATAATCCTAAGCAAATTCATCATACCATAATGCATATGATTCTTATATAATCCATACAAATTATTGAAGTAAAATAAAAGGATAAAAACATCCAACATCCAAAAAGCATAAAAACCTCCAAATAAAAGATAGAAAAGACTAAAATCAAAATAAACATCCAAAAATTCATATGCATTTCAAGCTATTTCATATATACACATGGATAATTTAGTAATTTAATTGATTTATTAACGGGTACGAATACCCGCGGGTACGGGTATCATCGAATCCGTGTCCGTATCCATAAAGTAACGGGTAGTTAAATACCCGTTTATTATACCCGCGGGTACCCATTTACCTACCCGCCCCGTGCCCATGACGGATTTTATCCACGGATACCCGCGGGCACGGATTTTTTTGCCACCCCTAGGTATGAATCTTTCCACATTCTCCTTATTTTCTAACATTTTACATTATATCTTCATCAGATCAAATTGGACTTTCTCCCGAAGAAGTCATTTCAAAGATTATGGCCAATCCTGATGTTGCCATGGCTTTTCAAAATCCTAGAGTTCAAGCAGCTATCATGGATGTATGTTTTAATTTAAGCTTTTGATTAATATTTCATATCAAATCTCTGATTTTTTTTGTTTTGTTTTGGTTGTGCAGTGTTCACAGAATCCAATGAATATTGCTAAATACCAAAATGATAAGGAGGTATGGTGATACTTATTTGAATTCAATTTGTCTTTCTGAGAAGCATGTTTAGCCCCCTGTATGTTGAATCTGACATTTCTTCCTCTTTACATTTCAGGTCATGGATGTCTTCAATAAAATATCTGAGCTCTTCCCCGGGGTGTCAGGCCAGCCTTGA

Protein sequence

>MS.gene049627.t1

MQQAFKTMMGQMNTQNNPFDSGAFSPGSPFPFPMPTPPGPAAPANSTSTQSQASSARTASQSTVTVDIPATKVEASPGPDINVKDEVEVKSEPKKSAFVDVSPEETVQQNAFERFKDVDASSSFKEAAEASQNGAPPNQGFGDSPGSQSARKSVLSVDALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQNPEYRQQLEEMLNNMGGSTEWDSRMMDTLKNFDLNSPDVKQQFDQIGLSPEEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMNIAKYQNDKEVMDVFNKISELFPGVSGQP