AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26961

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26961.t1 MTR_1g022250 98.056 463 8 1 1 462 6 468 0.0 939
MS.gene26961.t1 MTR_2g030420 88.043 460 51 1 1 460 9 464 0.0 831
MS.gene26961.t1 MTR_4g107370 62.236 474 159 4 1 455 9 481 0.0 596
MS.gene26961.t1 MTR_7g008040 63.478 460 150 6 1 445 4 460 0.0 588
MS.gene26961.t1 MTR_6g009520 58.862 457 175 4 1 446 8 462 0.0 544
MS.gene26961.t1 MTR_6g009540 56.455 457 186 4 1 446 6 460 0.0 541
MS.gene26961.t1 MTR_6g009720 57.359 462 178 6 1 444 8 468 0.0 536
MS.gene26961.t1 MTR_6g009553 57.238 449 172 6 18 446 1 449 0.0 518
MS.gene26961.t1 MTR_1g022245 56.522 460 181 4 1 444 4 460 0.0 516
MS.gene26961.t1 MTR_6g009770 55.388 464 166 7 1 446 8 448 4.50e-175 500
MS.gene26961.t1 MTR_6g042290 54.444 450 173 6 7 445 23 451 9.31e-171 489
MS.gene26961.t1 MTR_6g009510 52.125 447 149 7 4 445 20 406 5.58e-155 447
MS.gene26961.t1 MTR_6g009660 47.894 451 185 6 2 447 8 413 3.70e-140 410
MS.gene26961.t1 MTR_5g020980 42.184 467 231 7 1 453 13 454 9.76e-123 367
MS.gene26961.t1 MTR_4g128260 44.796 442 221 6 2 425 5 441 3.70e-121 363
MS.gene26961.t1 MTR_2g076970 44.124 451 215 9 7 448 9 431 9.25e-118 353
MS.gene26961.t1 MTR_2g076690 43.013 458 221 10 7 452 16 445 2.06e-113 342
MS.gene26961.t1 MTR_2g076710 41.978 455 224 8 7 448 14 441 6.30e-113 340
MS.gene26961.t1 MTR_2g076920 43.107 457 216 11 7 452 15 438 3.01e-112 339
MS.gene26961.t1 MTR_2g061820 42.956 433 228 7 4 425 2 426 5.81e-112 340
MS.gene26961.t1 MTR_2g076840 43.640 456 219 8 7 452 9 436 3.90e-111 344
MS.gene26961.t1 MTR_2g076840 51.449 276 110 4 173 446 451 704 5.05e-84 273
MS.gene26961.t1 MTR_2g076990 44.361 399 191 6 58 448 1 376 1.33e-108 328
MS.gene26961.t1 MTR_2g076900 40.512 469 238 9 7 461 9 450 1.93e-107 326
MS.gene26961.t1 MTR_8g076920 39.556 450 228 8 6 440 28 448 9.98e-106 323
MS.gene26961.t1 MTR_5g020990 38.784 477 252 11 2 451 16 479 1.17e-97 302
MS.gene26961.t1 MTR_3g103150 45.238 294 138 4 154 445 4 276 1.44e-82 256
MS.gene26961.t1 MTR_7g117950 34.343 396 205 11 56 445 59 405 5.70e-66 219
MS.gene26961.t1 MTR_3g092060 32.658 395 212 8 61 446 66 415 5.51e-63 212
MS.gene26961.t1 MTR_5g021020 37.097 310 154 7 138 445 135 405 4.92e-55 189
MS.gene26961.t1 MTR_8g027200 29.425 452 235 12 22 458 24 406 6.54e-53 184
MS.gene26961.t1 MTR_1g011680 61.983 121 46 0 324 444 13 133 2.77e-44 153
MS.gene26961.t1 MTR_5g021000 55.556 108 43 2 340 445 1 105 9.36e-33 122
MS.gene26961.t1 MTR_5g020720 36.735 196 86 4 252 445 26 185 4.35e-27 107
MS.gene26961.t1 MTR_1g113750 61.644 73 28 0 370 442 13 85 2.05e-22 92.8
MS.gene26961.t1 MTR_5g021010 48.352 91 42 2 357 445 34 121 3.83e-19 83.6
MS.gene26961.t1 MTR_2g101290 28.497 193 105 5 200 384 423 590 8.78e-14 74.3
MS.gene26961.t1 MTR_2g101290 28.497 193 105 5 200 384 423 590 1.30e-13 73.6
MS.gene26961.t1 MTR_2g076820 59.615 52 21 0 373 424 1 52 1.25e-12 63.5
MS.gene26961.t1 MTR_6g016600 27.869 244 133 9 220 448 345 560 1.25e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26961.t1 AT5G40010 59.341 455 170 4 1 441 7 460 0.0 553
MS.gene26961.t1 AT3G28580 59.111 450 174 3 1 441 7 455 0.0 536
MS.gene26961.t1 AT3G28510 57.456 456 183 2 6 452 12 465 0.0 519
MS.gene26961.t1 AT3G28580 55.333 450 169 4 1 441 7 433 1.37e-171 491
MS.gene26961.t1 AT3G28540 53.846 481 198 6 1 462 7 482 3.12e-171 491
MS.gene26961.t1 AT3G28540 53.846 481 198 6 1 462 7 482 4.64e-171 491
MS.gene26961.t1 AT3G28600 50.431 464 183 7 5 445 7 446 1.79e-159 460
MS.gene26961.t1 AT3G28610 48.460 487 198 8 1 461 2 461 9.87e-159 458
MS.gene26961.t1 AT3G28520 53.675 449 187 6 9 444 1 441 1.38e-157 455
MS.gene26961.t1 AT3G28570 49.897 485 183 11 1 461 8 456 4.19e-154 446
MS.gene26961.t1 AT5G40000 49.072 485 192 9 2 461 8 462 5.50e-154 446
MS.gene26961.t1 AT3G28570 49.897 485 183 11 1 461 1 449 6.57e-154 445
MS.gene26961.t1 AT3G28600 47.629 464 157 7 5 445 7 407 1.88e-141 412
MS.gene26961.t1 AT4G25835 44.495 436 224 4 2 425 5 434 1.58e-123 369
MS.gene26961.t1 AT5G57480 41.597 476 253 6 2 460 5 472 9.94e-122 365
MS.gene26961.t1 AT3G50940 42.404 441 220 9 17 449 31 445 2.57e-116 349
MS.gene26961.t1 AT3G50930 42.572 451 227 7 13 450 73 504 2.87e-114 348
MS.gene26961.t1 AT4G30250 42.457 464 238 7 2 445 5 459 6.17e-110 335
MS.gene26961.t1 AT4G30250 42.457 464 238 7 2 445 7 461 7.06e-110 335
MS.gene26961.t1 AT2G18193 41.176 459 223 10 6 450 19 444 4.20e-106 324
MS.gene26961.t1 AT5G17740 39.331 478 249 13 1 462 13 465 1.86e-102 316
MS.gene26961.t1 AT5G17760 41.727 417 201 6 59 457 70 462 7.92e-102 313
MS.gene26961.t1 AT2G18190 39.066 471 244 9 1 457 15 456 4.13e-101 311
MS.gene26961.t1 AT1G43910 39.735 453 246 8 1 445 14 447 1.80e-96 299
MS.gene26961.t1 AT4G05380 38.478 460 247 9 1 448 15 450 7.55e-95 294
MS.gene26961.t1 AT5G17730 35.463 454 261 8 6 450 18 448 1.25e-93 291
MS.gene26961.t1 AT5G17750 37.055 421 211 8 1 410 13 390 5.05e-88 274
MS.gene26961.t1 AT2G46620 32.118 439 236 8 22 445 25 416 6.85e-73 238
MS.gene26961.t1 AT5G17760 38.951 267 149 1 59 311 70 336 8.34e-59 197
MS.gene26961.t1 AT3G28560 43.256 215 104 3 1 204 7 214 5.95e-51 174
MS.gene26961.t1 AT3G29800 31.897 348 182 9 102 442 78 377 2.47e-47 169
MS.gene26961.t1 AT4G05340 49.485 97 39 2 304 397 4 93 1.60e-20 86.7
MS.gene26961.t1 AT3G16290 27.979 193 106 5 200 384 415 582 3.11e-12 69.3

Find 81 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATCTCTATTGTGTTTA+TGG 0.043514 1.3:+2822926 None:intergenic
ACTAGTAATGTTACACTTTC+TGG 0.065042 1.3:-2822370 MS.gene26961:CDS
AAAAGAGGTTATTTACTTTA+TGG 0.186213 1.3:-2822670 MS.gene26961:CDS
ATACTAATAGTGGATCTTAT+TGG 0.207885 1.3:-2822828 MS.gene26961:CDS
AACAAATTATGTGGAGAAAT+TGG 0.217945 1.3:-2822284 MS.gene26961:CDS
TGAATTTCATTGATGGATTA+TGG 0.245019 1.3:-2822342 MS.gene26961:CDS
TTGCTTCCTTGATGTTTGTT+TGG 0.248657 1.3:-2823326 MS.gene26961:CDS
AAACATCAAGGAAGCAATTA+TGG 0.257321 1.3:+2823332 None:intergenic
AAAAGAAGGTAAAGCAATTA+AGG 0.288836 1.3:-2822875 MS.gene26961:CDS
TTTGTGAGTATTTCTCAATT+TGG 0.291370 1.3:+2823265 None:intergenic
CTTTGCTTGTGTTGATGCTT+TGG 0.296328 1.3:+2823134 None:intergenic
AATTTGGTTCCTAAGTTGAT+AGG 0.297058 1.3:+2823281 None:intergenic
TGCTTCCTTGATGTTTGTTT+GGG 0.301724 1.3:-2823325 MS.gene26961:CDS
TGAAACATTAGCAATGGATT+TGG 0.307810 1.3:-2822773 MS.gene26961:CDS
ATTGAATCACATAATTTGTT+TGG 0.322491 1.3:-2822163 MS.gene26961:CDS
GCATCACCAGAAGCAGTCTT+TGG 0.340573 1.3:+2822076 None:intergenic
GGACTATTGAATTTCATTGA+TGG 0.363024 1.3:-2822349 MS.gene26961:CDS
TTGATGCCAAAGACTGCTTC+TGG 0.363892 1.3:-2822082 MS.gene26961:CDS
GCTGCCATGGCAAATTTGTT+AGG 0.379161 1.3:-2822616 MS.gene26961:CDS
GGTGCTAAGGTAATTCTCTA+TGG 0.385040 1.3:+2823155 None:intergenic
TGAACTCATGAAATGTGATT+TGG 0.386423 1.3:+2823214 None:intergenic
GTAATTCTCTATGGAAGAAT+AGG 0.394421 1.3:+2823164 None:intergenic
CTTATTACATTTAGTAAAGC+TGG 0.395330 1.3:-2822724 MS.gene26961:CDS
AGGAGGAAGAGAAGGATTCA+AGG 0.400269 1.3:-2822432 MS.gene26961:CDS
TCTTGAATTGACTGCTGTTA+AGG 0.402564 1.3:-2822578 MS.gene26961:CDS
CTTTATGGTCCTCCAGGGAC+TGG 0.407910 1.3:-2822655 MS.gene26961:CDS
GGTGAGTTCTATGCAAGAAT+TGG 0.409467 1.3:-2822703 MS.gene26961:CDS
GGTGACATGTTTGCTCAAAT+AGG 0.410316 1.3:-2823357 None:intergenic
ATGCAAGAATTGGAAGGGCT+TGG 0.415600 1.3:-2822693 MS.gene26961:CDS
ATTGTTGACTTTCCAGTCCC+TGG 0.415863 1.3:+2822643 None:intergenic
TGGTCAAAGGAGGAAGAAAA+AGG 0.417013 1.3:-2822467 MS.gene26961:CDS
GTGTTGATGCTTTGGTGCTA+AGG 0.429999 1.3:+2823142 None:intergenic
AGGAAACTTTATACTAATAG+TGG 0.434469 1.3:-2822838 MS.gene26961:CDS
AATTCAATGGAGTTAAACTT+TGG 0.438355 1.3:-2823035 MS.gene26961:CDS
ATTGGAAGGGCTTGGAAAAG+AGG 0.439570 1.3:-2822685 MS.gene26961:CDS
TATTTACTTTATGGTCCTCC+AGG 0.463635 1.3:-2822661 MS.gene26961:CDS
AAAGGAGAGAAAGGAAGAGG+AGG 0.467105 1.3:-2822449 MS.gene26961:CDS
AAAGGAAGAGGAGGAAGAGA+AGG 0.471794 1.3:-2822440 MS.gene26961:CDS
GTCAACAATGATTGCTGCCA+TGG 0.475118 1.3:-2822629 MS.gene26961:CDS
AACATTTGAAACATTAGCAA+TGG 0.477196 1.3:-2822779 MS.gene26961:CDS
ATTTGGTTCCTAAGTTGATA+GGG 0.478933 1.3:+2823282 None:intergenic
CTTAATTATGTACTAAAAGA+AGG 0.479074 1.3:-2822889 MS.gene26961:CDS
GATCCTGCATTGGTTAGAAA+AGG 0.480913 1.3:-2822262 MS.gene26961:CDS
CATATAGAGTTGTCATATTG+TGG 0.481944 1.3:-2822226 MS.gene26961:CDS
CAATGGAGTTAAACTTTGGT+GGG 0.482273 1.3:-2823031 MS.gene26961:CDS
TGAAATGTGATTTGGATGTA+AGG 0.487481 1.3:+2823222 None:intergenic
AACAATATGTGAATTGTTGA+AGG 0.490020 1.3:-2822140 MS.gene26961:CDS
AAATGCTCAGCAACATCAGC+TGG 0.493061 1.3:+2822103 None:intergenic
TCAATGGAGTTAAACTTTGG+TGG 0.498351 1.3:-2823032 MS.gene26961:CDS
GATTGCTCACTTGATTTGAC+TGG 0.504911 1.3:-2822487 MS.gene26961:CDS
GTTGTCATATTGTGGATTTG+AGG 0.509085 1.3:-2822218 MS.gene26961:CDS
GAAGTAGGTGATGAATTCAA+TGG 0.510659 1.3:-2823048 MS.gene26961:CDS
ATTTGAGGCATTCAAGATGT+TGG 0.512524 1.3:-2822203 MS.gene26961:CDS
TTTGATTCAAGCACTTGAGT+TGG 0.513367 1.3:-2822035 MS.gene26961:CDS
GGAGGAAGAGAAGGATTCAA+GGG 0.514417 1.3:-2822431 MS.gene26961:CDS
GCTAATGTTTCAAATGTTGA+AGG 0.514554 1.3:+2822784 None:intergenic
AGTTGGCAAAAGAAGAAGCT+AGG 0.520457 1.3:-2822018 MS.gene26961:CDS
TCAAGCACTTGTTCTTAGCA+TGG 0.533913 1.3:-2823082 MS.gene26961:CDS
ATCACATTTCATGAGTTCAC+TGG 0.535244 1.3:-2823210 MS.gene26961:CDS
CACTTGATTTGACTGGTCAA+AGG 0.548667 1.3:-2822480 MS.gene26961:CDS
ATTGGTTAGAAAAGGTAGAA+TGG 0.558531 1.3:-2822254 MS.gene26961:CDS
AGAAGCTAGGGTGAAATCAG+TGG 0.560095 1.3:-2822005 MS.gene26961:CDS
ATGGATGATCATGAAGAAGT+AGG 0.568240 1.3:-2823063 MS.gene26961:CDS
GTTAAACTTTGGTGGGCTAG+TGG 0.573542 1.3:-2823024 MS.gene26961:CDS
AATAGCCCAAACAAACATCA+AGG 0.574656 1.3:+2823320 None:intergenic
GGAATTATGGAGGAAAGAGA+TGG 0.581168 1.3:-2822397 MS.gene26961:CDS
ATTTACTTTATGGTCCTCCA+GGG 0.585163 1.3:-2822660 MS.gene26961:CDS
GGAGAAATTGGATCCTGCAT+TGG 0.595123 1.3:-2822272 MS.gene26961:CDS
AGTTCTATGCAAGAATTGGA+AGG 0.596527 1.3:-2822699 MS.gene26961:CDS
ACACAAGCAAAGAGACTCAA+AGG 0.600263 1.3:-2823123 MS.gene26961:CDS
TTGATTTGACTGGTCAAAGG+AGG 0.608711 1.3:-2822477 MS.gene26961:CDS
GAAATGTGATTTGGATGTAA+GGG 0.622484 1.3:+2823223 None:intergenic
GTTGACTTTCCAGTCCCTGG+AGG 0.623801 1.3:+2822646 None:intergenic
GTTGGCAAAAGAAGAAGCTA+GGG 0.631329 1.3:-2822017 MS.gene26961:CDS
GTTCTATGCAAGAATTGGAA+GGG 0.632683 1.3:-2822698 MS.gene26961:CDS
TTAAGGTGAGAAATAGACAA+AGG 0.654965 1.3:-2822858 MS.gene26961:CDS
ATAGCCTAACAAATTTGCCA+TGG 0.654970 1.3:+2822612 None:intergenic
GGATTATGGTCTGCATGTGG+AGG 0.679090 1.3:-2822328 MS.gene26961:CDS
AAGGATGTTCAAACACAACA+TGG 0.681122 1.3:+2822803 None:intergenic
TTAAGGATAACACTGAGTTG+AGG 0.695176 1.3:-2822561 MS.gene26961:CDS
GATGGATTATGGTCTGCATG+TGG 0.714258 1.3:-2822331 MS.gene26961:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAGGTTATTTACTTTA+TGG - chr1.3:2822666-2822685 MS.gene26961:CDS 20.0%
!! CTTAATTATGTACTAAAAGA+AGG - chr1.3:2822447-2822466 MS.gene26961:CDS 20.0%
!!! AAGTGAAAATGAATTTTGTT+TGG + chr1.3:2822349-2822368 None:intergenic 20.0%
!!! ATTGAATCACATAATTTGTT+TGG - chr1.3:2823173-2823192 MS.gene26961:CDS 20.0%
! AAAAGAAGGTAAAGCAATTA+AGG - chr1.3:2822461-2822480 MS.gene26961:CDS 25.0%
! AACAAATTATGTGGAGAAAT+TGG - chr1.3:2823052-2823071 MS.gene26961:CDS 25.0%
! AACAATATGTGAATTGTTGA+AGG - chr1.3:2823196-2823215 MS.gene26961:CDS 25.0%
! AATTCAATGGAGTTAAACTT+TGG - chr1.3:2822301-2822320 MS.gene26961:CDS 25.0%
! AGGAAACTTTATACTAATAG+TGG - chr1.3:2822498-2822517 MS.gene26961:CDS 25.0%
! ATCACAACATAGATGAAAAA+AGG - chr1.3:2822370-2822389 MS.gene26961:CDS 25.0%
! CTTATTACATTTAGTAAAGC+TGG - chr1.3:2822612-2822631 MS.gene26961:CDS 25.0%
! TGAGAAATACTCACAAAAAT+TGG - chr1.3:2822077-2822096 MS.gene26961:CDS 25.0%
! TTTGTGAGTATTTCTCAATT+TGG + chr1.3:2822074-2822093 None:intergenic 25.0%
!! AACATTTGAAACATTAGCAA+TGG - chr1.3:2822557-2822576 MS.gene26961:CDS 25.0%
!! AGTTTTCACAACAAATTATG+TGG - chr1.3:2823043-2823062 MS.gene26961:CDS 25.0%
!!! AATTTTTTCCCTATCAACTT+AGG - chr1.3:2822046-2822065 MS.gene26961:CDS 25.0%
!!! ATACTAATAGTGGATCTTAT+TGG - chr1.3:2822508-2822527 MS.gene26961:CDS 25.0%
!!! TGAATTTCATTGATGGATTA+TGG - chr1.3:2822994-2823013 MS.gene26961:CDS 25.0%
AAACATCAAGGAAGCAATTA+TGG + chr1.3:2822007-2822026 None:intergenic 30.0%
ACTAGTAATGTTACACTTTC+TGG - chr1.3:2822966-2822985 MS.gene26961:CDS 30.0%
ATTGGTTAGAAAAGGTAGAA+TGG - chr1.3:2823082-2823101 MS.gene26961:CDS 30.0%
CATATAGAGTTGTCATATTG+TGG - chr1.3:2823110-2823129 MS.gene26961:CDS 30.0%
GCTAATGTTTCAAATGTTGA+AGG + chr1.3:2822555-2822574 None:intergenic 30.0%
GGACTATTGAATTTCATTGA+TGG - chr1.3:2822987-2823006 MS.gene26961:CDS 30.0%
GTAATTCTCTATGGAAGAAT+AGG + chr1.3:2822175-2822194 None:intergenic 30.0%
TCACATCTCTATTGTGTTTA+TGG + chr1.3:2822413-2822432 None:intergenic 30.0%
TGAACTCATGAAATGTGATT+TGG + chr1.3:2822125-2822144 None:intergenic 30.0%
TTAAGGTGAGAAATAGACAA+AGG - chr1.3:2822478-2822497 MS.gene26961:CDS 30.0%
! CACAATAGAGATGTGATTTT+AGG - chr1.3:2822417-2822436 MS.gene26961:CDS 30.0%
! GAAATGTGATTTGGATGTAA+GGG + chr1.3:2822116-2822135 None:intergenic 30.0%
! TGAAACATTAGCAATGGATT+TGG - chr1.3:2822563-2822582 MS.gene26961:CDS 30.0%
! TGAAATGTGATTTGGATGTA+AGG + chr1.3:2822117-2822136 None:intergenic 30.0%
!! AATTTGGTTCCTAAGTTGAT+AGG + chr1.3:2822058-2822077 None:intergenic 30.0%
!! ATTTGGTTCCTAAGTTGATA+GGG + chr1.3:2822057-2822076 None:intergenic 30.0%
AAGGATGTTCAAACACAACA+TGG + chr1.3:2822536-2822555 None:intergenic 35.0%
AAGGATTCAAGGGAGAAAAA+AGG - chr1.3:2822915-2822934 MS.gene26961:CDS 35.0%
AATAGCCCAAACAAACATCA+AGG + chr1.3:2822019-2822038 None:intergenic 35.0%
AGTTCTATGCAAGAATTGGA+AGG - chr1.3:2822637-2822656 MS.gene26961:CDS 35.0%
ATAGCCTAACAAATTTGCCA+TGG + chr1.3:2822727-2822746 None:intergenic 35.0%
ATCACATTTCATGAGTTCAC+TGG - chr1.3:2822126-2822145 MS.gene26961:CDS 35.0%
ATGGATGATCATGAAGAAGT+AGG - chr1.3:2822273-2822292 MS.gene26961:CDS 35.0%
ATTTACTTTATGGTCCTCCA+GGG - chr1.3:2822676-2822695 MS.gene26961:CDS 35.0%
CAATGGAGTTAAACTTTGGT+GGG - chr1.3:2822305-2822324 MS.gene26961:CDS 35.0%
GAAAAAAGGTGGAATTATGG+AGG - chr1.3:2822929-2822948 MS.gene26961:CDS 35.0%
GAAGTAGGTGATGAATTCAA+TGG - chr1.3:2822288-2822307 MS.gene26961:CDS 35.0%
GGAGAAAAAAGGTGGAATTA+TGG - chr1.3:2822926-2822945 MS.gene26961:CDS 35.0%
GTTCTATGCAAGAATTGGAA+GGG - chr1.3:2822638-2822657 MS.gene26961:CDS 35.0%
GTTGTCATATTGTGGATTTG+AGG - chr1.3:2823118-2823137 MS.gene26961:CDS 35.0%
TATTTACTTTATGGTCCTCC+AGG - chr1.3:2822675-2822694 MS.gene26961:CDS 35.0%
TCAATGGAGTTAAACTTTGG+TGG - chr1.3:2822304-2822323 MS.gene26961:CDS 35.0%
TCTTGAATTGACTGCTGTTA+AGG - chr1.3:2822758-2822777 MS.gene26961:CDS 35.0%
TGCTTCCTTGATGTTTGTTT+GGG - chr1.3:2822011-2822030 MS.gene26961:CDS 35.0%
TTAAGGATAACACTGAGTTG+AGG - chr1.3:2822775-2822794 MS.gene26961:CDS 35.0%
TTGCTTCCTTGATGTTTGTT+TGG - chr1.3:2822010-2822029 MS.gene26961:CDS 35.0%
TTTGATTCAAGCACTTGAGT+TGG - chr1.3:2823301-2823320 MS.gene26961:CDS 35.0%
! ATTTGAGGCATTCAAGATGT+TGG - chr1.3:2823133-2823152 MS.gene26961:CDS 35.0%
ACACAAGCAAAGAGACTCAA+AGG - chr1.3:2822213-2822232 MS.gene26961:CDS 40.0%
AGTTGGCAAAAGAAGAAGCT+AGG - chr1.3:2823318-2823337 MS.gene26961:CDS 40.0%
GAAAAAGGAGAGAAAGGAAG+AGG - chr1.3:2822884-2822903 MS.gene26961:CDS 40.0%
GAGGAAGAAAAAGGAGAGAA+AGG - chr1.3:2822878-2822897 MS.gene26961:CDS 40.0%
GATTCAAGGGAGAAAAAAGG+TGG - chr1.3:2822918-2822937 MS.gene26961:CDS 40.0%
GGAATTATGGAGGAAAGAGA+TGG - chr1.3:2822939-2822958 MS.gene26961:CDS 40.0%
GGTGAGTTCTATGCAAGAAT+TGG - chr1.3:2822633-2822652 MS.gene26961:CDS 40.0%
GGTGCTAAGGTAATTCTCTA+TGG + chr1.3:2822184-2822203 None:intergenic 40.0%
GTTGGCAAAAGAAGAAGCTA+GGG - chr1.3:2823319-2823338 MS.gene26961:CDS 40.0%
TCAAGCACTTGTTCTTAGCA+TGG - chr1.3:2822254-2822273 MS.gene26961:CDS 40.0%
TGGTCAAAGGAGGAAGAAAA+AGG - chr1.3:2822869-2822888 MS.gene26961:CDS 40.0%
! CACTTGATTTGACTGGTCAA+AGG - chr1.3:2822856-2822875 MS.gene26961:CDS 40.0%
! CTACCTTTTCTAACCAATGC+AGG + chr1.3:2823080-2823099 None:intergenic 40.0%
! CTTTGCTTGTGTTGATGCTT+TGG + chr1.3:2822205-2822224 None:intergenic 40.0%
! GATTGCTCACTTGATTTGAC+TGG - chr1.3:2822849-2822868 MS.gene26961:CDS 40.0%
! TTGATTTGACTGGTCAAAGG+AGG - chr1.3:2822859-2822878 MS.gene26961:CDS 40.0%
!! GATCCTGCATTGGTTAGAAA+AGG - chr1.3:2823074-2823093 MS.gene26961:CDS 40.0%
AAAGGAAGAGGAGGAAGAGA+AGG - chr1.3:2822896-2822915 MS.gene26961:CDS 45.0%
AAAGGAGAGAAAGGAAGAGG+AGG - chr1.3:2822887-2822906 MS.gene26961:CDS 45.0%
AAATGCTCAGCAACATCAGC+TGG + chr1.3:2823236-2823255 None:intergenic 45.0%
AGAAGCTAGGGTGAAATCAG+TGG - chr1.3:2823331-2823350 MS.gene26961:CDS 45.0%
AGGAGGAAGAGAAGGATTCA+AGG - chr1.3:2822904-2822923 MS.gene26961:CDS 45.0%
ATGCAAGAATTGGAAGGGCT+TGG - chr1.3:2822643-2822662 MS.gene26961:CDS 45.0%
ATTGGAAGGGCTTGGAAAAG+AGG - chr1.3:2822651-2822670 MS.gene26961:CDS 45.0%
GGAGAAATTGGATCCTGCAT+TGG - chr1.3:2823064-2823083 MS.gene26961:CDS 45.0%
GGAGGAAGAGAAGGATTCAA+GGG - chr1.3:2822905-2822924 MS.gene26961:CDS 45.0%
GTCAACAATGATTGCTGCCA+TGG - chr1.3:2822707-2822726 MS.gene26961:CDS 45.0%
TTGATGCCAAAGACTGCTTC+TGG - chr1.3:2823254-2823273 MS.gene26961:CDS 45.0%
! GCTGCCATGGCAAATTTGTT+AGG - chr1.3:2822720-2822739 MS.gene26961:CDS 45.0%
!! ATTGTTGACTTTCCAGTCCC+TGG + chr1.3:2822696-2822715 None:intergenic 45.0%
!! GATGGATTATGGTCTGCATG+TGG - chr1.3:2823005-2823024 MS.gene26961:CDS 45.0%
!! GTGTTGATGCTTTGGTGCTA+AGG + chr1.3:2822197-2822216 None:intergenic 45.0%
!! GTTAAACTTTGGTGGGCTAG+TGG - chr1.3:2822312-2822331 MS.gene26961:CDS 45.0%
GCATCACCAGAAGCAGTCTT+TGG + chr1.3:2823263-2823282 None:intergenic 50.0%
GGATTATGGTCTGCATGTGG+AGG - chr1.3:2823008-2823027 MS.gene26961:CDS 50.0%
CTTTATGGTCCTCCAGGGAC+TGG - chr1.3:2822681-2822700 MS.gene26961:CDS 55.0%
! GTTGACTTTCCAGTCCCTGG+AGG + chr1.3:2822693-2822712 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 2821985 2823373 2821985 ID=MS.gene26961
chr1.3 mRNA 2821985 2823373 2821985 ID=MS.gene26961.t1;Parent=MS.gene26961
chr1.3 exon 2821985 2823373 2821985 ID=MS.gene26961.t1.exon1;Parent=MS.gene26961.t1
chr1.3 CDS 2821985 2823373 2821985 ID=cds.MS.gene26961.t1;Parent=MS.gene26961.t1
Gene Sequence

>MS.gene26961

ATGTTTGCTCAAATAGGATCCATAATTGCTTCCTTGATGTTTGTTTGGGCTATTTTTCAACAATTTTTTCCCTATCAACTTAGGAACCAAATTGAGAAATACTCACAAAAATTGGTTACTTTTATCTACCCTTACATCCAAATCACATTTCATGAGTTCACTGGTGAAAGACTCATGAGAAGTGAAGCCTATTCTTCCATAGAGAATTACCTTAGCACCAAAGCATCAACACAAGCAAAGAGACTCAAAGGTGACATAGCTAAGAATAATCAAGCACTTGTTCTTAGCATGGATGATCATGAAGAAGTAGGTGATGAATTCAATGGAGTTAAACTTTGGTGGGCTAGTGGCAAAAATATATCCAAACAAAATTCATTTTCACTTCATCACAACATAGATGAAAAAAGGTACTACAAACTCACTTTCCATAAACACAATAGAGATGTGATTTTAGGTACATATCTTAATTATGTACTAAAAGAAGGTAAAGCAATTAAGGTGAGAAATAGACAAAGGAAACTTTATACTAATAGTGGATCTTATTGGAGCCATGTTGTGTTTGAACATCCTTCAACATTTGAAACATTAGCAATGGATTTGGAGAAGAAGAAAATGATCATTGATGATCTTATTACATTTAGTAAAGCTGGTGAGTTCTATGCAAGAATTGGAAGGGCTTGGAAAAGAGGTTATTTACTTTATGGTCCTCCAGGGACTGGAAAGTCAACAATGATTGCTGCCATGGCAAATTTGTTAGGCTATGATCTTTATGATCTTGAATTGACTGCTGTTAAGGATAACACTGAGTTGAGGAAGCTTTTGATTGAGACATCAAGTAAGTCTATAATTGTGATTGAAGATATTGATTGCTCACTTGATTTGACTGGTCAAAGGAGGAAGAAAAAGGAGAGAAAGGAAGAGGAGGAAGAGAAGGATTCAAGGGAGAAAAAAGGTGGAATTATGGAGGAAAGAGATGGAAAAACTAGTAATGTTACACTTTCTGGACTATTGAATTTCATTGATGGATTATGGTCTGCATGTGGAGGTGAAAGACTAATAGTTTTCACAACAAATTATGTGGAGAAATTGGATCCTGCATTGGTTAGAAAAGGTAGAATGGATAAGCATATAGAGTTGTCATATTGTGGATTTGAGGCATTCAAGATGTTGGCTAAGAATTATCTTAATATTGAATCACATAATTTGTTTGGAACAATATGTGAATTGTTGAAGGAAGTTGAAATCACTCCAGCTGATGTTGCTGAGCATTTGATGCCAAAGACTGCTTCTGGTGATGCAGAAATTTATTTGAAAAGTTTGATTCAAGCACTTGAGTTGGCAAAAGAAGAAGCTAGGGTGAAATCAGTGGAAGATGCAAAGAAACTATGA
Protein sequence

>MS.gene26961.t1

MFAQIGSIIASLMFVWAIFQQFFPYQLRNQIEKYSQKLVTFIYPYIQITFHEFTGERLMRSEAYSSIENYLSTKASTQAKRLKGDIAKNNQALVLSMDDHEEVGDEFNGVKLWWASGKNISKQNSFSLHHNIDEKRYYKLTFHKHNRDVILGTYLNYVLKEGKAIKVRNRQRKLYTNSGSYWSHVVFEHPSTFETLAMDLEKKKMIIDDLITFSKAGEFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKERKEEEEEKDSREKKGGIMEERDGKTSNVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALVRKGRMDKHIELSYCGFEAFKMLAKNYLNIESHNLFGTICELLKEVEITPADVAEHLMPKTASGDAEIYLKSLIQALELAKEEARVKSVEDAKKL