Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26983.t1 | XP_013466128.1 | 90.4 | 406 | 37 | 1 | 1 | 406 | 1 | 404 | 2.90E-159 | 571.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26983.t1 | Q94B59 | 46.8 | 355 | 188 | 1 | 52 | 405 | 51 | 405 | 2.3e-88 | 327.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26983.t1 | A0A072VEC1 | 90.4 | 406 | 37 | 1 | 1 | 406 | 1 | 404 | 2.1e-159 | 571.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016230 | MS.gene26983 | PPI |
| MS.gene26983 | MS.gene018156 | PPI |
| MS.gene27564 | MS.gene26983 | PPI |
| MS.gene96096 | MS.gene26983 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26983.t1 | MTR_1g022400 | 96.798 | 406 | 11 | 1 | 1 | 406 | 1 | 404 | 0.0 | 810 |
| MS.gene26983.t1 | MTR_1g072300 | 33.333 | 375 | 241 | 6 | 31 | 401 | 13 | 382 | 4.08e-66 | 219 |
| MS.gene26983.t1 | MTR_3g099753 | 28.796 | 382 | 268 | 3 | 24 | 403 | 29 | 408 | 4.92e-54 | 187 |
| MS.gene26983.t1 | MTR_3g099753 | 30.372 | 349 | 239 | 3 | 57 | 403 | 38 | 384 | 8.17e-54 | 186 |
| MS.gene26983.t1 | MTR_8g069570 | 33.438 | 317 | 208 | 3 | 76 | 392 | 43 | 356 | 7.25e-51 | 178 |
| MS.gene26983.t1 | MTR_8g465890 | 32.267 | 344 | 225 | 6 | 50 | 389 | 21 | 360 | 2.39e-44 | 160 |
| MS.gene26983.t1 | MTR_2g090290 | 29.204 | 339 | 230 | 5 | 54 | 385 | 30 | 365 | 1.36e-43 | 158 |
| MS.gene26983.t1 | MTR_2g047855 | 31.672 | 341 | 228 | 5 | 50 | 389 | 25 | 361 | 3.79e-43 | 157 |
| MS.gene26983.t1 | MTR_1g086820 | 29.814 | 322 | 219 | 5 | 40 | 361 | 18 | 332 | 5.24e-43 | 157 |
| MS.gene26983.t1 | MTR_2g013450 | 30.405 | 296 | 204 | 2 | 76 | 370 | 48 | 342 | 2.99e-42 | 155 |
| MS.gene26983.t1 | MTR_8g059115 | 30.986 | 284 | 189 | 5 | 122 | 403 | 9 | 287 | 2.05e-34 | 132 |
| MS.gene26983.t1 | MTR_8g007375 | 27.600 | 250 | 180 | 1 | 118 | 367 | 6 | 254 | 1.74e-32 | 127 |
| MS.gene26983.t1 | MTR_8g031520 | 32.075 | 212 | 140 | 3 | 41 | 251 | 92 | 300 | 7.27e-31 | 120 |
| MS.gene26983.t1 | MTR_7g089770 | 28.041 | 296 | 199 | 7 | 75 | 364 | 175 | 462 | 7.54e-28 | 115 |
| MS.gene26983.t1 | MTR_2g096880 | 23.871 | 310 | 224 | 6 | 51 | 356 | 39 | 340 | 2.57e-22 | 99.4 |
| MS.gene26983.t1 | MTR_1g050750 | 27.365 | 296 | 203 | 7 | 71 | 361 | 105 | 393 | 3.15e-22 | 99.0 |
| MS.gene26983.t1 | MTR_2g036560 | 23.958 | 288 | 195 | 6 | 89 | 362 | 164 | 441 | 1.43e-14 | 76.3 |
| MS.gene26983.t1 | MTR_3g033040 | 23.077 | 338 | 251 | 7 | 64 | 397 | 144 | 476 | 1.63e-14 | 75.5 |
| MS.gene26983.t1 | MTR_3g033040 | 23.077 | 338 | 251 | 7 | 64 | 397 | 144 | 476 | 2.47e-14 | 75.1 |
| MS.gene26983.t1 | MTR_7g017530 | 24.898 | 245 | 181 | 3 | 159 | 403 | 286 | 527 | 7.45e-14 | 73.9 |
| MS.gene26983.t1 | MTR_5g008300 | 23.558 | 208 | 157 | 2 | 159 | 366 | 373 | 578 | 4.83e-12 | 68.6 |
| MS.gene26983.t1 | MTR_7g017570 | 30.000 | 130 | 89 | 1 | 127 | 254 | 357 | 486 | 8.29e-12 | 67.4 |
| MS.gene26983.t1 | MTR_7g017570 | 23.673 | 245 | 184 | 3 | 159 | 403 | 321 | 562 | 2.19e-11 | 66.2 |
| MS.gene26983.t1 | MTR_2g030540 | 28.395 | 162 | 111 | 3 | 158 | 319 | 396 | 552 | 7.05e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26983.t1 | AT5G09450 | 56.235 | 409 | 171 | 4 | 1 | 405 | 1 | 405 | 2.90e-165 | 470 |
| MS.gene26983.t1 | AT4G02820 | 33.058 | 363 | 231 | 7 | 47 | 403 | 48 | 404 | 3.70e-60 | 204 |
| MS.gene26983.t1 | AT5G27460 | 30.688 | 378 | 253 | 4 | 33 | 403 | 12 | 387 | 8.50e-53 | 183 |
| MS.gene26983.t1 | AT2G20710 | 30.312 | 353 | 242 | 4 | 48 | 399 | 30 | 379 | 4.43e-51 | 179 |
| MS.gene26983.t1 | AT1G60770 | 34.098 | 305 | 194 | 4 | 90 | 392 | 57 | 356 | 4.09e-49 | 174 |
| MS.gene26983.t1 | AT4G21705 | 32.166 | 314 | 211 | 2 | 58 | 370 | 27 | 339 | 1.51e-46 | 167 |
| MS.gene26983.t1 | AT1G02150 | 29.118 | 340 | 238 | 3 | 68 | 406 | 79 | 416 | 2.09e-45 | 164 |
| MS.gene26983.t1 | AT4G01990 | 30.405 | 296 | 203 | 3 | 75 | 370 | 59 | 351 | 4.32e-41 | 152 |
| MS.gene26983.t1 | AT1G02370 | 27.937 | 315 | 224 | 3 | 48 | 361 | 63 | 375 | 1.24e-40 | 151 |
| MS.gene26983.t1 | AT1G28020 | 30.341 | 323 | 215 | 6 | 75 | 392 | 55 | 372 | 5.00e-35 | 135 |
| MS.gene26983.t1 | AT1G28020 | 36.036 | 111 | 68 | 1 | 58 | 168 | 373 | 480 | 8.11e-14 | 73.6 |
| MS.gene26983.t1 | AT2G20710 | 27.526 | 287 | 204 | 4 | 114 | 399 | 1 | 284 | 1.12e-33 | 130 |
| MS.gene26983.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 68 | 371 | 140 | 441 | 6.48e-28 | 116 |
| MS.gene26983.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 68 | 371 | 140 | 441 | 6.48e-28 | 116 |
| MS.gene26983.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 68 | 371 | 140 | 441 | 6.48e-28 | 116 |
| MS.gene26983.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 68 | 371 | 140 | 441 | 6.48e-28 | 116 |
| MS.gene26983.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 68 | 371 | 140 | 441 | 6.48e-28 | 116 |
| MS.gene26983.t1 | AT1G15480 | 26.552 | 290 | 205 | 6 | 71 | 359 | 141 | 423 | 1.51e-23 | 103 |
| MS.gene26983.t1 | AT3G11380 | 29.880 | 251 | 170 | 4 | 3 | 249 | 293 | 541 | 4.73e-23 | 101 |
| MS.gene26983.t1 | AT3G11380 | 26.623 | 308 | 187 | 7 | 89 | 392 | 76 | 348 | 4.08e-20 | 92.8 |
| MS.gene26983.t1 | AT3G15590 | 25.547 | 274 | 195 | 6 | 49 | 321 | 138 | 403 | 9.21e-23 | 100 |
| MS.gene26983.t1 | AT3G15590 | 25.547 | 274 | 195 | 6 | 49 | 321 | 138 | 403 | 9.21e-23 | 100 |
| MS.gene26983.t1 | AT1G07590 | 24.848 | 330 | 240 | 5 | 1 | 326 | 8 | 333 | 1.65e-22 | 100 |
| MS.gene26983.t1 | AT1G28000 | 26.667 | 225 | 154 | 4 | 60 | 277 | 37 | 257 | 7.21e-18 | 85.1 |
| MS.gene26983.t1 | AT1G43010 | 23.684 | 266 | 175 | 7 | 28 | 282 | 8 | 256 | 5.45e-15 | 74.7 |
| MS.gene26983.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 89 | 363 | 136 | 413 | 4.89e-13 | 71.2 |
| MS.gene26983.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 89 | 363 | 136 | 413 | 4.89e-13 | 71.2 |
| MS.gene26983.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 89 | 363 | 136 | 413 | 4.89e-13 | 71.2 |
| MS.gene26983.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 89 | 363 | 136 | 413 | 4.89e-13 | 71.2 |
| MS.gene26983.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 89 | 363 | 136 | 413 | 4.89e-13 | 71.2 |
| MS.gene26983.t1 | AT3G11350 | 30.435 | 138 | 73 | 3 | 103 | 217 | 55 | 192 | 4.07e-12 | 67.4 |
| MS.gene26983.t1 | AT2G18940 | 24.815 | 270 | 179 | 9 | 89 | 344 | 137 | 396 | 4.47e-11 | 65.5 |
Find 72 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTAGTAGCACTTCTTT+TGG | 0.246404 | 1.3:-2559968 | None:intergenic |
| TTATGCTGGCTTGGGAAATA+AGG | 0.247724 | 1.3:+2562092 | MS.gene26983:CDS |
| GCTTGATTGTAAAAGGATTA+TGG | 0.252184 | 1.3:+2562278 | MS.gene26983:CDS |
| AGGATAAACTTGATCAAATA+TGG | 0.253390 | 1.3:+2562112 | MS.gene26983:CDS |
| TTGATGTGCTTGATTGTAAA+AGG | 0.262901 | 1.3:+2562271 | MS.gene26983:CDS |
| GCGTTATAAACACGCTTTAG+AGG | 0.283080 | 1.3:+2560071 | MS.gene26983:CDS |
| ATGGATAACATATGACTTAC+TGG | 0.307051 | 1.3:+2562062 | MS.gene26983:CDS |
| AGATTAAAAGTAAAGATATC+AGG | 0.320239 | 1.3:-2561841 | None:intergenic |
| GGTCATTCTTTATGCTGGCT+TGG | 0.357597 | 1.3:+2562083 | MS.gene26983:CDS |
| TTAATATTGATGAAGTTAGA+AGG | 0.362686 | 1.3:+2561890 | MS.gene26983:CDS |
| ATAATCATTGCTGATAAAAC+TGG | 0.365373 | 1.3:-2559812 | None:intergenic |
| GTCATTCTTTATGCTGGCTT+GGG | 0.374898 | 1.3:+2562084 | MS.gene26983:CDS |
| TCATGAAGAATATGAGTTAT+CGG | 0.398822 | 1.3:+2561516 | MS.gene26983:CDS |
| GAGAATCATATTCAAGTTGT+TGG | 0.401757 | 1.3:-2562334 | None:intergenic |
| CGGAGGGTGATGATGATCTA+AGG | 0.402181 | 1.3:+2559920 | MS.gene26983:CDS |
| TTACTGGTCATTCTTTATGC+TGG | 0.410792 | 1.3:+2562078 | MS.gene26983:CDS |
| ATATCACGAAGCTCAGAAAC+AGG | 0.453221 | 1.3:-2560024 | None:intergenic |
| TATCCTTTCATATAGTTCCT+CGG | 0.457583 | 1.3:-2561695 | None:intergenic |
| GGAAGAGACTCCGAACTCTT+CGG | 0.457971 | 1.3:+2559900 | MS.gene26983:CDS |
| TGAAGACCTCAAACAACAAA+AGG | 0.466712 | 1.3:+2561813 | MS.gene26983:CDS |
| TCTTTACATGTCAGTTGGGC+AGG | 0.472806 | 1.3:+2561768 | MS.gene26983:CDS |
| TTGTACGTAACGGCATCAAA+GGG | 0.473448 | 1.3:-2561733 | None:intergenic |
| CTAAACAGAAAATGATTAGC+AGG | 0.484955 | 1.3:+2562151 | MS.gene26983:CDS |
| TCATCACCCTCCGAAGAGTT+CGG | 0.488672 | 1.3:-2559910 | None:intergenic |
| CAGGTGAAGTTATTGATCAA+TGG | 0.491061 | 1.3:+2562226 | MS.gene26983:CDS |
| ATGACTCTTTACATGTCAGT+TGG | 0.492710 | 1.3:+2561763 | MS.gene26983:CDS |
| ATTGTACGTAACGGCATCAA+AGG | 0.498103 | 1.3:-2561734 | None:intergenic |
| GCCCTCCTCCATTCTTATGC+AGG | 0.500197 | 1.3:+2561652 | MS.gene26983:CDS |
| CTCAGTCTCGACGAGTGAGT+TGG | 0.502370 | 1.3:-2562019 | None:intergenic |
| AAGGGATCACACAAAGTCAA+TGG | 0.508969 | 1.3:+2562043 | MS.gene26983:CDS |
| CTTGATCATGCAAAAGAAGC+AGG | 0.509186 | 1.3:+2562207 | MS.gene26983:CDS |
| TGACTCTTTACATGTCAGTT+GGG | 0.520810 | 1.3:+2561764 | MS.gene26983:CDS |
| CCGCATAGATTTGATGAACA+AGG | 0.522273 | 1.3:+2561555 | MS.gene26983:CDS |
| GTGCTGGTTCTGATGAAAGT+TGG | 0.524579 | 1.3:+2561935 | MS.gene26983:CDS |
| TCACTCGTCGAGACTGAGAA+AGG | 0.530019 | 1.3:+2562024 | MS.gene26983:CDS |
| AGTCTCTTCCACGTAATCAC+TGG | 0.537700 | 1.3:-2559887 | None:intergenic |
| CATTGAGAAGAACCTCAATC+CGG | 0.538432 | 1.3:+2562356 | MS.gene26983:CDS |
| CAGTGAAATATACGTTGGCC+AGG | 0.538859 | 1.3:-2561972 | None:intergenic |
| CTCCTGCATAAGAATGGAGG+AGG | 0.542649 | 1.3:-2561654 | None:intergenic |
| TTGAGGTCTTCAACAACCGA+TGG | 0.554094 | 1.3:-2561802 | None:intergenic |
| GAAGAAATGCGTAATGGTGC+TGG | 0.559211 | 1.3:+2561919 | MS.gene26983:CDS |
| ATTTCAGATATCAGAATGGA+TGG | 0.560128 | 1.3:+2561489 | MS.gene26983:intron |
| GATTAAAAGTAAAGATATCA+GGG | 0.567372 | 1.3:-2561840 | None:intergenic |
| CACTCGTCGAGACTGAGAAA+GGG | 0.570011 | 1.3:+2562025 | MS.gene26983:CDS |
| CATCATTTCATTGTACGTAA+CGG | 0.576928 | 1.3:-2561743 | None:intergenic |
| GCCAACGTATATTTCACTGC+GGG | 0.584073 | 1.3:+2561976 | MS.gene26983:CDS |
| ATTCTTGAAGAAATGCGTAA+TGG | 0.587763 | 1.3:+2561913 | MS.gene26983:CDS |
| AAAATCTTGCTGAACGATGA+TGG | 0.593332 | 1.3:-2559846 | None:intergenic |
| GTCTCGCAAGTCTTTGCAGA+AGG | 0.595633 | 1.3:-2561622 | None:intergenic |
| TCGCAAGTCTTTGCAGAAGG+TGG | 0.597118 | 1.3:-2561619 | None:intergenic |
| TTGCTCCTGCATAAGAATGG+AGG | 0.600601 | 1.3:-2561657 | None:intergenic |
| AGAGACTCCGAACTCTTCGG+AGG | 0.605003 | 1.3:+2559903 | MS.gene26983:CDS |
| AGGCCGAGGAACTATATGAA+AGG | 0.606287 | 1.3:+2561692 | MS.gene26983:CDS |
| TGGAACTTGCACTATCAAGA+TGG | 0.610177 | 1.3:-2561999 | None:intergenic |
| TGAGGTCTTCAACAACCGAT+GGG | 0.611229 | 1.3:-2561801 | None:intergenic |
| TTGGATTAGATATTTGAACC+TGG | 0.618204 | 1.3:+2561954 | MS.gene26983:CDS |
| GATGATTTCAGATATCAGAA+TGG | 0.621758 | 1.3:+2561485 | MS.gene26983:intron |
| TTCTCTCTCTCATCAAACGA+AGG | 0.627248 | 1.3:+2559697 | MS.gene26983:CDS |
| GAGACTCCGAACTCTTCGGA+GGG | 0.627328 | 1.3:+2559904 | MS.gene26983:CDS |
| AAAGACTTGCGAGACTTACA+CGG | 0.633932 | 1.3:+2561630 | MS.gene26983:CDS |
| ATCAAGCACATCAAAATCTG+TGG | 0.635067 | 1.3:-2562262 | None:intergenic |
| ATCTAAGGAGTAGAATCTTG+AGG | 0.636582 | 1.3:+2559935 | MS.gene26983:CDS |
| TGCTGTGACCAGTGATTACG+TGG | 0.642896 | 1.3:+2559879 | MS.gene26983:CDS |
| GCCCGCAGTGAAATATACGT+TGG | 0.643301 | 1.3:-2561977 | None:intergenic |
| ACGTAACGGCATCAAAGGGG+AGG | 0.670188 | 1.3:-2561729 | None:intergenic |
| GCAGGTAGAAAAGATCCCAT+CGG | 0.682540 | 1.3:+2561786 | MS.gene26983:CDS |
| TCCTGCATAAGAATGGAGGA+GGG | 0.685369 | 1.3:-2561653 | None:intergenic |
| GGCCAACGTATATTTCACTG+CGG | 0.706091 | 1.3:+2561975 | MS.gene26983:CDS |
| TGAGAGAGAGAAATAGAGAG+CGG | 0.708192 | 1.3:-2559686 | None:intergenic |
| CCTTGTTCATCAAATCTATG+CGG | 0.713202 | 1.3:-2561555 | None:intergenic |
| TGTACGTAACGGCATCAAAG+GGG | 0.718003 | 1.3:-2561732 | None:intergenic |
| ATCTTGCTGAACGATGATGG+TGG | 0.770095 | 1.3:-2559843 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAATTAATATTGTT+CGG | + | chr1.3:2561379-2561398 | MS.gene26983:intron | 10.0% |
| !!! | ATATCTTTACTTTTAATCTA+TGG | + | chr1.3:2561845-2561864 | MS.gene26983:CDS | 15.0% |
| !!! | TCATTTTCTCAAATAATATT+TGG | - | chr1.3:2561129-2561148 | None:intergenic | 15.0% |
| !! | AGATTAAAAGTAAAGATATC+AGG | - | chr1.3:2561844-2561863 | None:intergenic | 20.0% |
| !! | ATAAATAAGCTAATGAGTAA+TGG | - | chr1.3:2560210-2560229 | None:intergenic | 20.0% |
| !! | ATGATTATTAATAGCTAATG+AGG | + | chr1.3:2561063-2561082 | MS.gene26983:intron | 20.0% |
| !! | GATTAAAAGTAAAGATATCA+GGG | - | chr1.3:2561843-2561862 | None:intergenic | 20.0% |
| !! | TACTAATGTTCTTCAAAAAT+GGG | + | chr1.3:2559981-2560000 | MS.gene26983:CDS | 20.0% |
| !! | TTAATATTGATGAAGTTAGA+AGG | + | chr1.3:2561890-2561909 | MS.gene26983:CDS | 20.0% |
| !! | TTCAAAATAATATTCACTTC+TGG | - | chr1.3:2561368-2561387 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTGCTCTATAAAA+CGG | + | chr1.3:2561442-2561461 | MS.gene26983:intron | 20.0% |
| ! | AGGATAAACTTGATCAAATA+TGG | + | chr1.3:2562112-2562131 | MS.gene26983:CDS | 25.0% |
| ! | ATAATCATTGCTGATAAAAC+TGG | - | chr1.3:2559815-2559834 | None:intergenic | 25.0% |
| ! | ATATGAAACTAAGCTGAAAA+TGG | + | chr1.3:2560659-2560678 | MS.gene26983:intron | 25.0% |
| ! | CCAATAATTTGAATCTGATT+GGG | - | chr1.3:2559760-2559779 | None:intergenic | 25.0% |
| ! | CCAATCAGATTCAAATTATT+GGG | + | chr1.3:2559758-2559777 | MS.gene26983:intron | 25.0% |
| ! | CTACTAATGTTCTTCAAAAA+TGG | + | chr1.3:2559980-2559999 | MS.gene26983:CDS | 25.0% |
| ! | TCATGAAGAATATGAGTTAT+CGG | + | chr1.3:2561516-2561535 | MS.gene26983:CDS | 25.0% |
| ! | TTGTCTTGATTACTAATACA+AGG | - | chr1.3:2561026-2561045 | None:intergenic | 25.0% |
| !! | AAGGATTATGGATTCTTTTA+CGG | + | chr1.3:2562290-2562309 | MS.gene26983:CDS | 25.0% |
| !! | TTACTTGTCTTTTCTTTGTT+TGG | + | chr1.3:2560098-2560117 | MS.gene26983:intron | 25.0% |
| !!! | AGTTCTGAAGTTTATTTTTG+GGG | + | chr1.3:2560855-2560874 | MS.gene26983:intron | 25.0% |
| !!! | GAGTTCTGAAGTTTATTTTT+GGG | + | chr1.3:2560854-2560873 | MS.gene26983:intron | 25.0% |
| AGTTCTCTGATTGTGAATTA+GGG | + | chr1.3:2560884-2560903 | MS.gene26983:intron | 30.0% | |
| ATGGATAACATATGACTTAC+TGG | + | chr1.3:2562062-2562081 | MS.gene26983:CDS | 30.0% | |
| ATTCTTGAAGAAATGCGTAA+TGG | + | chr1.3:2561913-2561932 | MS.gene26983:CDS | 30.0% | |
| ATTTCAGATATCAGAATGGA+TGG | + | chr1.3:2561489-2561508 | MS.gene26983:intron | 30.0% | |
| CATCATTTCATTGTACGTAA+CGG | - | chr1.3:2561746-2561765 | None:intergenic | 30.0% | |
| CCCAATAATTTGAATCTGAT+TGG | - | chr1.3:2559761-2559780 | None:intergenic | 30.0% | |
| CCCAATCAGATTCAAATTAT+TGG | + | chr1.3:2559757-2559776 | MS.gene26983:intron | 30.0% | |
| CTAAACAGAAAATGATTAGC+AGG | + | chr1.3:2562151-2562170 | MS.gene26983:CDS | 30.0% | |
| CTACTAATTCATGTCTTCTA+AGG | - | chr1.3:2560952-2560971 | None:intergenic | 30.0% | |
| CTTGTAACTGTTGCAATAAA+AGG | + | chr1.3:2561260-2561279 | MS.gene26983:intron | 30.0% | |
| GAATATAGACATGTCTGTAT+TGG | - | chr1.3:2560767-2560786 | None:intergenic | 30.0% | |
| GATGATTTCAGATATCAGAA+TGG | + | chr1.3:2561485-2561504 | MS.gene26983:intron | 30.0% | |
| GCTTGATTGTAAAAGGATTA+TGG | + | chr1.3:2562278-2562297 | MS.gene26983:CDS | 30.0% | |
| TAGTTCTCTGATTGTGAATT+AGG | + | chr1.3:2560883-2560902 | MS.gene26983:intron | 30.0% | |
| TATCCTTTCATATAGTTCCT+CGG | - | chr1.3:2561698-2561717 | None:intergenic | 30.0% | |
| TATTAATAGCTAATGAGGCA+CGG | + | chr1.3:2561068-2561087 | MS.gene26983:intron | 30.0% | |
| TGTGAATTAGGGATAATTTC+TGG | + | chr1.3:2560895-2560914 | MS.gene26983:intron | 30.0% | |
| TTGATGTGCTTGATTGTAAA+AGG | + | chr1.3:2562271-2562290 | MS.gene26983:CDS | 30.0% | |
| ! | AACATTAGTAGCACTTCTTT+TGG | - | chr1.3:2559971-2559990 | None:intergenic | 30.0% |
| ! | ACATTAGTAGCACTTCTTTT+GGG | - | chr1.3:2559970-2559989 | None:intergenic | 30.0% |
| ! | ATGGATTCTTTTACGGAAAT+TGG | + | chr1.3:2562297-2562316 | MS.gene26983:CDS | 30.0% |
| ! | CAGAGATTAATAGTTCTGTA+AGG | + | chr1.3:2561203-2561222 | MS.gene26983:intron | 30.0% |
| ! | GATTTGATGAACAAGGTTTT+TGG | + | chr1.3:2561562-2561581 | MS.gene26983:CDS | 30.0% |
| ! | TTAGGGATAATTTCTGGAAA+TGG | + | chr1.3:2560901-2560920 | MS.gene26983:intron | 30.0% |
| ! | TTCAAAAATGGGTTCTTCAA+GGG | + | chr1.3:2559992-2560011 | MS.gene26983:CDS | 30.0% |
| ! | TTCTTTTACGGAAATTGGAT+TGG | + | chr1.3:2562302-2562321 | MS.gene26983:CDS | 30.0% |
| ! | TTGGATTAGATATTTGAACC+TGG | + | chr1.3:2561954-2561973 | MS.gene26983:CDS | 30.0% |
| ! | TTTATTTCAGTTAGCTCTCT+AGG | + | chr1.3:2560225-2560244 | MS.gene26983:intron | 30.0% |
| !! | AAGTTGTTTTCATATCCTAG+AGG | + | chr1.3:2560634-2560653 | MS.gene26983:intron | 30.0% |
| !! | AGTTGTTTTCATATCCTAGA+GGG | + | chr1.3:2560635-2560654 | MS.gene26983:intron | 30.0% |
| !! | GAGAATCATATTCAAGTTGT+TGG | - | chr1.3:2562337-2562356 | None:intergenic | 30.0% |
| !!! | CGAGTTCTGAAGTTTATTTT+TGG | + | chr1.3:2560853-2560872 | MS.gene26983:intron | 30.0% |
| AAAATCTTGCTGAACGATGA+TGG | - | chr1.3:2559849-2559868 | None:intergenic | 35.0% | |
| AACTAAGCTGAAAATGGCTT+AGG | + | chr1.3:2560665-2560684 | MS.gene26983:intron | 35.0% | |
| ACAGCTCAATTAAGCACTTA+TGG | - | chr1.3:2560789-2560808 | None:intergenic | 35.0% | |
| ATCAAGCACATCAAAATCTG+TGG | - | chr1.3:2562265-2562284 | None:intergenic | 35.0% | |
| ATCTAAGGAGTAGAATCTTG+AGG | + | chr1.3:2559935-2559954 | MS.gene26983:CDS | 35.0% | |
| ATGACTCTTTACATGTCAGT+TGG | + | chr1.3:2561763-2561782 | MS.gene26983:CDS | 35.0% | |
| CAGGTGAAGTTATTGATCAA+TGG | + | chr1.3:2562226-2562245 | MS.gene26983:CDS | 35.0% | |
| CCTTGTTCATCAAATCTATG+CGG | - | chr1.3:2561558-2561577 | None:intergenic | 35.0% | |
| GGCTTATTTGAGCTTAACTA+CGG | - | chr1.3:2560746-2560765 | None:intergenic | 35.0% | |
| TGAAGACCTCAAACAACAAA+AGG | + | chr1.3:2561813-2561832 | MS.gene26983:CDS | 35.0% | |
| TGACTCTTTACATGTCAGTT+GGG | + | chr1.3:2561764-2561783 | MS.gene26983:CDS | 35.0% | |
| TGTTGTTCAGTGCTAACTAA+GGG | + | chr1.3:2561291-2561310 | MS.gene26983:intron | 35.0% | |
| TTACTGGTCATTCTTTATGC+TGG | + | chr1.3:2562078-2562097 | MS.gene26983:CDS | 35.0% | |
| ! | AAACTGGTGTTTCTGCAAAA+TGG | - | chr1.3:2559799-2559818 | None:intergenic | 35.0% |
| ! | CATTAGTAGCACTTCTTTTG+GGG | - | chr1.3:2559969-2559988 | None:intergenic | 35.0% |
| ! | CTTCAAAAATGGGTTCTTCA+AGG | + | chr1.3:2559991-2560010 | MS.gene26983:CDS | 35.0% |
| ! | TTCACTTCTGGAAACTTCTT+TGG | - | chr1.3:2561356-2561375 | None:intergenic | 35.0% |
| ! | TTTTTGCTCCTGCATAAGAA+TGG | - | chr1.3:2561663-2561682 | None:intergenic | 35.0% |
| !! | TGATTGGGTGTTGAGAAAAT+TGG | - | chr1.3:2559745-2559764 | None:intergenic | 35.0% |
| AAACTTCTTTGGCGTTGCAA+TGG | - | chr1.3:2561345-2561364 | None:intergenic | 40.0% | |
| AAAGACTTGCGAGACTTACA+CGG | + | chr1.3:2561630-2561649 | MS.gene26983:CDS | 40.0% | |
| AAGGGATCACACAAAGTCAA+TGG | + | chr1.3:2562043-2562062 | MS.gene26983:CDS | 40.0% | |
| AATCGTTGTCTTGTCAGTGT+TGG | + | chr1.3:2561171-2561190 | MS.gene26983:intron | 40.0% | |
| ACGCTTTCGATTAGATGTGT+CGG | - | chr1.3:2560396-2560415 | None:intergenic | 40.0% | |
| AGGAGCAAAAATGACCGAAA+AGG | + | chr1.3:2561672-2561691 | MS.gene26983:CDS | 40.0% | |
| AGTTTAGTGAGACTGTTTGC+AGG | - | chr1.3:2560719-2560738 | None:intergenic | 40.0% | |
| ATATCACGAAGCTCAGAAAC+AGG | - | chr1.3:2560027-2560046 | None:intergenic | 40.0% | |
| ATTGTACGTAACGGCATCAA+AGG | - | chr1.3:2561737-2561756 | None:intergenic | 40.0% | |
| CATAAGCACTTATGCTCGTT+TGG | + | chr1.3:2560331-2560350 | MS.gene26983:intron | 40.0% | |
| CATTGAGAAGAACCTCAATC+CGG | + | chr1.3:2562356-2562375 | MS.gene26983:CDS | 40.0% | |
| CCGCATAGATTTGATGAACA+AGG | + | chr1.3:2561555-2561574 | MS.gene26983:CDS | 40.0% | |
| CTTAGTTTCATATGCCCTCT+AGG | - | chr1.3:2560652-2560671 | None:intergenic | 40.0% | |
| CTTGATCATGCAAAAGAAGC+AGG | + | chr1.3:2562207-2562226 | MS.gene26983:CDS | 40.0% | |
| GCGTTATAAACACGCTTTAG+AGG | + | chr1.3:2560071-2560090 | MS.gene26983:CDS | 40.0% | |
| GCTTCATAGTATATAAGCGC+TGG | + | chr1.3:2560551-2560570 | MS.gene26983:intron | 40.0% | |
| GTTAAATCTGAGCGCATGTT+AGG | + | chr1.3:2561319-2561338 | MS.gene26983:intron | 40.0% | |
| TGAGAGAGAGAAATAGAGAG+CGG | - | chr1.3:2559689-2559708 | None:intergenic | 40.0% | |
| TGGAACTTGCACTATCAAGA+TGG | - | chr1.3:2562002-2562021 | None:intergenic | 40.0% | |
| TGTTGCAATAAAAGGTCCTC+TGG | + | chr1.3:2561268-2561287 | MS.gene26983:intron | 40.0% | |
| TTCTCTCTCTCATCAAACGA+AGG | + | chr1.3:2559697-2559716 | MS.gene26983:CDS | 40.0% | |
| TTGTACGTAACGGCATCAAA+GGG | - | chr1.3:2561736-2561755 | None:intergenic | 40.0% | |
| ! | ATATAGTTCCTCGGCCTTTT+CGG | - | chr1.3:2561689-2561708 | None:intergenic | 40.0% |
| ! | GTGTTGTTCAGTGCTAACTA+AGG | + | chr1.3:2561290-2561309 | MS.gene26983:intron | 40.0% |
| !! | GTCATTCTTTATGCTGGCTT+GGG | + | chr1.3:2562084-2562103 | MS.gene26983:CDS | 40.0% |
| !! | TTATGCTGGCTTGGGAAATA+AGG | + | chr1.3:2562092-2562111 | MS.gene26983:CDS | 40.0% |
| !!! | GGACAACCTTTTGTTGTTTG+AGG | - | chr1.3:2561822-2561841 | None:intergenic | 40.0% |
| AAAAATGACCGAAAAGGCCG+AGG | + | chr1.3:2561678-2561697 | MS.gene26983:CDS | 45.0% | |
| AGACAGTCAGACACAGACAT+TGG | - | chr1.3:2560529-2560548 | None:intergenic | 45.0% | |
| AGGCCGAGGAACTATATGAA+AGG | + | chr1.3:2561692-2561711 | MS.gene26983:CDS | 45.0% | |
| AGTCTCTTCCACGTAATCAC+TGG | - | chr1.3:2559890-2559909 | None:intergenic | 45.0% | |
| CAGTGAAATATACGTTGGCC+AGG | - | chr1.3:2561975-2561994 | None:intergenic | 45.0% | |
| GAAGAAATGCGTAATGGTGC+TGG | + | chr1.3:2561919-2561938 | MS.gene26983:CDS | 45.0% | |
| GCAGGTAGAAAAGATCCCAT+CGG | + | chr1.3:2561786-2561805 | MS.gene26983:CDS | 45.0% | |
| GCCAACGTATATTTCACTGC+GGG | + | chr1.3:2561976-2561995 | MS.gene26983:CDS | 45.0% | |
| GGCCAACGTATATTTCACTG+CGG | + | chr1.3:2561975-2561994 | MS.gene26983:CDS | 45.0% | |
| TCCTGCATAAGAATGGAGGA+GGG | - | chr1.3:2561656-2561675 | None:intergenic | 45.0% | |
| TCTTTACATGTCAGTTGGGC+AGG | + | chr1.3:2561768-2561787 | MS.gene26983:CDS | 45.0% | |
| TGAGGTCTTCAACAACCGAT+GGG | - | chr1.3:2561804-2561823 | None:intergenic | 45.0% | |
| TGTACGTAACGGCATCAAAG+GGG | - | chr1.3:2561735-2561754 | None:intergenic | 45.0% | |
| TTGAGGTCTTCAACAACCGA+TGG | - | chr1.3:2561805-2561824 | None:intergenic | 45.0% | |
| TTGCTCCTGCATAAGAATGG+AGG | - | chr1.3:2561660-2561679 | None:intergenic | 45.0% | |
| ! | ATCTTGCTGAACGATGATGG+TGG | - | chr1.3:2559846-2559865 | None:intergenic | 45.0% |
| ! | GGTCATTCTTTATGCTGGCT+TGG | + | chr1.3:2562083-2562102 | MS.gene26983:CDS | 45.0% |
| ! | TTAGCACTGAACAACACCAG+AGG | - | chr1.3:2561287-2561306 | None:intergenic | 45.0% |
| !! | GTGCTGGTTCTGATGAAAGT+TGG | + | chr1.3:2561935-2561954 | MS.gene26983:CDS | 45.0% |
| CAACGTTTCAGTGTCGTGTC+TGG | - | chr1.3:2561103-2561122 | None:intergenic | 50.0% | |
| CACTCGTCGAGACTGAGAAA+GGG | + | chr1.3:2562025-2562044 | MS.gene26983:CDS | 50.0% | |
| CTCCTGCATAAGAATGGAGG+AGG | - | chr1.3:2561657-2561676 | None:intergenic | 50.0% | |
| GCCCGCAGTGAAATATACGT+TGG | - | chr1.3:2561980-2561999 | None:intergenic | 50.0% | |
| GGAAGAGACTCCGAACTCTT+CGG | + | chr1.3:2559900-2559919 | MS.gene26983:CDS | 50.0% | |
| GTCTCGCAAGTCTTTGCAGA+AGG | - | chr1.3:2561625-2561644 | None:intergenic | 50.0% | |
| TCACTCGTCGAGACTGAGAA+AGG | + | chr1.3:2562024-2562043 | MS.gene26983:CDS | 50.0% | |
| TCATCACCCTCCGAAGAGTT+CGG | - | chr1.3:2559913-2559932 | None:intergenic | 50.0% | |
| TCGCAAGTCTTTGCAGAAGG+TGG | - | chr1.3:2561622-2561641 | None:intergenic | 50.0% | |
| TGCTGTGACCAGTGATTACG+TGG | + | chr1.3:2559879-2559898 | MS.gene26983:CDS | 50.0% | |
| ! | CGGAGGGTGATGATGATCTA+AGG | + | chr1.3:2559920-2559939 | MS.gene26983:CDS | 50.0% |
| ACGTAACGGCATCAAAGGGG+AGG | - | chr1.3:2561732-2561751 | None:intergenic | 55.0% | |
| AGAGACTCCGAACTCTTCGG+AGG | + | chr1.3:2559903-2559922 | MS.gene26983:CDS | 55.0% | |
| CTCAGTCTCGACGAGTGAGT+TGG | - | chr1.3:2562022-2562041 | None:intergenic | 55.0% | |
| GAGACTCCGAACTCTTCGGA+GGG | + | chr1.3:2559904-2559923 | MS.gene26983:CDS | 55.0% | |
| GCCCTCCTCCATTCTTATGC+AGG | + | chr1.3:2561652-2561671 | MS.gene26983:CDS | 55.0% | |
| TCGTGACGATGCCAGACACT+GGG | - | chr1.3:2560420-2560439 | None:intergenic | 55.0% | |
| TGGACACACGACACGAACGT+TGG | - | chr1.3:2560509-2560528 | None:intergenic | 55.0% | |
| TTCGTGACGATGCCAGACAC+TGG | - | chr1.3:2560421-2560440 | None:intergenic | 55.0% | |
| ! | TCGAAAGCGTGCCCAGTGTC+TGG | + | chr1.3:2560406-2560425 | MS.gene26983:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2559678 | 2562389 | 2559678 | ID=MS.gene26983 |
| chr1.3 | mRNA | 2559678 | 2562389 | 2559678 | ID=MS.gene26983.t1;Parent=MS.gene26983 |
| chr1.3 | exon | 2559678 | 2559718 | 2559678 | ID=MS.gene26983.t1.exon1;Parent=MS.gene26983.t1 |
| chr1.3 | CDS | 2559678 | 2559718 | 2559678 | ID=cds.MS.gene26983.t1;Parent=MS.gene26983.t1 |
| chr1.3 | exon | 2559807 | 2560092 | 2559807 | ID=MS.gene26983.t1.exon2;Parent=MS.gene26983.t1 |
| chr1.3 | CDS | 2559807 | 2560092 | 2559807 | ID=cds.MS.gene26983.t1;Parent=MS.gene26983.t1 |
| chr1.3 | exon | 2561496 | 2562389 | 2561496 | ID=MS.gene26983.t1.exon3;Parent=MS.gene26983.t1 |
| chr1.3 | CDS | 2561496 | 2562389 | 2561496 | ID=cds.MS.gene26983.t1;Parent=MS.gene26983.t1 |
| Gene Sequence |
| Protein sequence |
