AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27038

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27038.t1 MTR_1g023760 96.253 774 29 0 1 774 1 774 0.0 1522
MS.gene27038.t1 MTR_8g466020 73.485 132 25 1 48 179 19 140 1.14e-53 188
MS.gene27038.t1 MTR_7g007170 79.592 98 20 0 84 181 11 108 3.70e-46 164
MS.gene27038.t1 MTR_1g023925 44.706 170 20 3 557 724 1 98 5.24e-28 108
MS.gene27038.t1 MTR_5g038620 37.313 134 83 1 126 259 121 253 6.83e-17 85.5
MS.gene27038.t1 MTR_4g108140 35.714 140 84 2 124 259 99 236 3.51e-16 83.2
MS.gene27038.t1 MTR_4g108140 35.714 140 84 2 124 259 100 237 3.71e-16 82.8
MS.gene27038.t1 MTR_3g091560 36.047 172 66 6 124 261 112 273 5.69e-15 78.6
MS.gene27038.t1 MTR_4g050480 32.121 165 82 4 124 262 96 256 4.82e-14 75.5
MS.gene27038.t1 MTR_4g050480 32.121 165 82 4 124 262 97 257 4.84e-14 75.5
MS.gene27038.t1 MTR_8g024540 59.649 57 23 0 126 182 129 185 5.59e-14 75.9
MS.gene27038.t1 MTR_0019s0070 33.333 156 88 7 107 260 106 247 1.52e-12 70.9
MS.gene27038.t1 MTR_1g101330 28.631 241 143 8 30 260 25 246 2.40e-12 70.1
MS.gene27038.t1 MTR_8g014580 49.254 67 34 0 126 192 128 194 2.76e-12 70.1
MS.gene27038.t1 MTR_1g041430 56.604 53 23 0 124 176 111 163 4.72e-12 69.3
MS.gene27038.t1 MTR_7g114700 50.769 65 32 0 124 188 135 199 6.44e-12 68.9
MS.gene27038.t1 MTR_1g095740 28.834 163 90 3 124 260 141 303 1.49e-11 67.8
MS.gene27038.t1 MTR_1g007920 56.364 55 24 0 121 175 94 148 2.25e-11 67.4
MS.gene27038.t1 MTR_0047s0040 43.210 81 44 1 117 197 94 172 2.67e-11 67.0
MS.gene27038.t1 MTR_1g007920 56.364 55 24 0 121 175 119 173 3.25e-11 67.0
MS.gene27038.t1 MTR_1g066800 28.302 159 92 2 124 260 116 274 6.28e-11 65.9
MS.gene27038.t1 MTR_1g066800 28.302 159 92 2 124 260 121 279 6.37e-11 65.9
MS.gene27038.t1 MTR_1g103070 44.444 72 39 1 124 195 136 206 6.47e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27038.t1 AT1G19870 36.842 703 284 29 113 773 21 605 8.09e-95 308
MS.gene27038.t1 AT1G19870 36.842 703 284 29 113 773 204 788 1.01e-92 308
MS.gene27038.t1 AT1G18840 36.628 172 91 6 95 259 85 245 6.70e-22 101
MS.gene27038.t1 AT1G18840 36.628 172 91 6 95 259 85 245 6.70e-22 101
MS.gene27038.t1 AT1G18840 36.628 172 91 6 95 259 85 245 6.70e-22 101
MS.gene27038.t1 AT1G74690 37.838 148 69 3 124 259 113 249 9.06e-21 97.8
MS.gene27038.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.28e-20 97.4
MS.gene27038.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.28e-20 97.4
MS.gene27038.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.28e-20 97.4
MS.gene27038.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.78e-20 96.7
MS.gene27038.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.78e-20 96.7
MS.gene27038.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.78e-20 96.7
MS.gene27038.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.94e-20 96.7
MS.gene27038.t1 AT5G03040 29.630 162 87 4 124 260 115 274 5.59e-15 78.6
MS.gene27038.t1 AT5G03040 29.630 162 87 4 124 260 115 274 5.59e-15 78.6
MS.gene27038.t1 AT5G03040 29.630 162 87 4 124 260 115 274 5.59e-15 78.6
MS.gene27038.t1 AT3G49260 51.471 68 33 0 124 191 120 187 7.89e-15 78.2
MS.gene27038.t1 AT3G49260 51.471 68 33 0 124 191 120 187 7.89e-15 78.2
MS.gene27038.t1 AT3G49260 51.471 68 33 0 124 191 120 187 7.89e-15 78.2
MS.gene27038.t1 AT3G49260 51.471 68 33 0 124 191 120 187 8.20e-15 78.2
MS.gene27038.t1 AT4G14750 31.111 225 118 6 1 214 1 199 1.29e-14 77.0
MS.gene27038.t1 AT2G02790 28.804 184 130 1 76 259 59 241 1.69e-14 77.8
MS.gene27038.t1 AT2G02790 28.497 193 134 2 67 259 53 241 1.78e-14 77.8
MS.gene27038.t1 AT2G02790 28.497 193 134 2 67 259 53 241 1.78e-14 77.8
MS.gene27038.t1 AT3G52290 31.875 160 84 4 124 260 108 265 1.84e-14 77.0
MS.gene27038.t1 AT1G01110 55.072 69 30 1 126 194 123 190 2.84e-14 76.6
MS.gene27038.t1 AT4G14750 31.111 225 118 6 1 214 60 258 4.47e-14 75.9
MS.gene27038.t1 AT4G14750 31.111 225 118 6 1 214 60 258 4.93e-14 75.5
MS.gene27038.t1 AT4G00820 53.623 69 31 1 126 194 134 201 1.06e-13 75.1
MS.gene27038.t1 AT4G10640 35.260 173 76 6 19 189 27 165 4.45e-13 72.4
MS.gene27038.t1 AT3G51380 53.968 63 29 0 124 186 37 99 5.82e-13 66.2
MS.gene27038.t1 AT3G22190 30.435 161 88 3 126 262 90 250 1.05e-12 71.2
MS.gene27038.t1 AT3G22190 30.435 161 88 3 126 262 90 250 1.05e-12 71.2
MS.gene27038.t1 AT3G22190 30.435 161 88 3 126 262 90 250 1.05e-12 71.2
MS.gene27038.t1 AT3G22190 30.435 161 88 3 126 262 90 250 1.05e-12 71.2
MS.gene27038.t1 AT1G72670 30.097 206 96 7 96 260 57 255 1.65e-12 70.9
MS.gene27038.t1 AT2G26180 57.692 52 22 0 124 175 84 135 2.98e-11 66.6
MS.gene27038.t1 AT3G09710 30.409 171 92 7 124 269 108 276 4.52e-11 66.2
MS.gene27038.t1 AT5G13460 32.164 171 99 6 107 260 92 262 4.89e-11 66.2

Find 160 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTACTTCTTGTTTA+AGG 0.127404 1.1:-1144663 MS.gene27038:CDS
TTGATTCCATTATTTCATTT+TGG 0.176997 1.1:+1142376 None:intergenic
GGCTTCAATTAGAGGATATT+TGG 0.187454 1.1:-1143434 MS.gene27038:intron
GAAGGTGTTCCTTGAGATTC+AGG 0.211542 1.1:+1141664 None:intergenic
TCTTGATTCTGAGGAGAATT+AGG 0.232958 1.1:+1142333 None:intergenic
GTTTCGGTGACAATTGTTTC+TGG 0.235103 1.1:+1143508 None:intergenic
GATAGTACGGTACCACTTTC+AGG 0.245019 1.1:+1142030 None:intergenic
ACTTTCAGGATCAGCATTTC+TGG 0.256182 1.1:+1142044 None:intergenic
TATCCCTTCTACTAAATCTT+TGG 0.290554 1.1:+1141948 None:intergenic
TTCTTTCCAAAATGAAATAA+TGG 0.290941 1.1:-1142382 MS.gene27038:CDS
GACCACATCTTCAGCAAATA+AGG 0.295588 1.1:-1143656 MS.gene27038:CDS
GATCAATTAGAAACTGTTAA+TGG 0.296217 1.1:-1141850 MS.gene27038:CDS
CAGCAATAAGTTTGCTTCTC+AGG 0.298464 1.1:-1142891 MS.gene27038:intron
GCTGAGTTCAAATTCAAATT+CGG 0.303504 1.1:-1142175 MS.gene27038:CDS
ATTGCTACTACTATTATCTT+TGG 0.306041 1.1:+1141369 None:intergenic
GACTGTTCGGTCGTACAAAT+TGG 0.313335 1.1:+1142651 None:intergenic
GCTAATTCAAATCAAGATTC+AGG 0.330999 1.1:-1141547 MS.gene27038:CDS
GCCCTTGTGCCCTGCAGAGC+TGG 0.334794 1.1:+1141169 None:intergenic
GGTTCTTGATCAGTGGGTTC+AGG 0.340125 1.1:+1141394 None:intergenic
GCGAATGCAAATCATGATTC+AGG 0.353964 1.1:-1141493 MS.gene27038:CDS
CAAGCAGAATCACCTTTAGA+AGG 0.355744 1.1:+1142732 None:intergenic
AGGCTCAACAGCATGCTCTT+TGG 0.355751 1.1:+1141786 None:intergenic
ATCATCCAGGCTTCAATTAG+AGG 0.366920 1.1:-1143442 MS.gene27038:CDS
ATGATTATCACAGCAGATTC+TGG 0.367431 1.1:+1143460 None:intergenic
GTCATTATCTCCAGCTCTGC+AGG 0.369580 1.1:-1141179 MS.gene27038:CDS
CTGAGTTCAAATTCAAATTC+GGG 0.375719 1.1:-1142174 MS.gene27038:CDS
TAATTTACCTATCTCTGATT+CGG 0.378191 1.1:-1141872 MS.gene27038:CDS
CAAATCTTCTCAACAACATT+AGG 0.378376 1.1:+1143589 None:intergenic
TTGTGTAGCTTGCATGAAAC+GGG 0.383519 1.1:+1141336 None:intergenic
TGCACATCTGGACTTGATCT+TGG 0.387615 1.1:+1141280 None:intergenic
GGAAAGAGACGCAATTCATT+TGG 0.388346 1.1:-1141427 MS.gene27038:CDS
GATGCCAAAGATTTAGTAGA+AGG 0.388914 1.1:-1141952 MS.gene27038:CDS
GGAGAGATGGATGTTTGTTT+CGG 0.389207 1.1:-1142700 MS.gene27038:CDS
AACACCTTCAAGTCAGGTTT+CGG 0.391099 1.1:-1141650 MS.gene27038:CDS
TCGTACAAGGAGCTGCATTT+TGG 0.392183 1.1:+1143205 None:intergenic
AGAGGAATTTGCATTTATCT+TGG 0.400449 1.1:+1141303 None:intergenic
ATGTCAGTGTCATGCACATC+TGG 0.402507 1.1:+1141268 None:intergenic
GAGGGAAAGAAAATTACATT+TGG 0.405918 1.1:-1142252 MS.gene27038:CDS
ACCTGGTGCAACTGGTAAGC+AGG 0.406901 1.1:-1141221 MS.gene27038:CDS
TTGGTAGGTTCTTGATCAGT+GGG 0.414639 1.1:+1141388 None:intergenic
TTTCCATTCAGCTGATCCTT+AGG 0.417372 1.1:+1141445 None:intergenic
TTCTCTAATAAATGATAACT+TGG 0.417692 1.1:-1142466 MS.gene27038:CDS
AGATGCATGAGTGCTATCTT+TGG 0.419431 1.1:+1142620 None:intergenic
TTCACCGAAACCTGACTTGA+AGG 0.420183 1.1:+1141646 None:intergenic
TTCGTGGGCACTTGGTTAGA+AGG 0.422143 1.1:-1143265 MS.gene27038:CDS
TTTGGTTTCGTCCGACTGTT+CGG 0.423888 1.1:+1142638 None:intergenic
CATTCCTTACCTGGTGCAAC+TGG 0.427428 1.1:-1141229 MS.gene27038:CDS
CACAAGGGCAATGGTTCATC+TGG 0.427723 1.1:-1141155 None:intergenic
TCAAGGAACACCTTCAAGTC+AGG 0.430241 1.1:-1141656 MS.gene27038:CDS
GGAATTGTCATATAGCTTCC+CGG 0.435431 1.1:+1141685 None:intergenic
GCATGCTCTTTGGAGTTCTC+AGG 0.444509 1.1:+1141796 None:intergenic
TCTTTCCCTCGGTCTCTAGT+TGG 0.446588 1.1:+1142265 None:intergenic
ACCTGACAGATCAGAGACTT+TGG 0.446642 1.1:-1141986 MS.gene27038:CDS
ATCCACCTTACTCTCAGTTT+CGG 0.446953 1.1:+1143492 None:intergenic
ATTTGCATTTATCTTGGCCT+TGG 0.451725 1.1:+1141309 None:intergenic
AGAAAATTACATTTGGATCA+AGG 0.453684 1.1:-1142245 MS.gene27038:CDS
CTTCTAAAGGTGATTCTGCT+TGG 0.454777 1.1:-1142731 MS.gene27038:CDS
AAGGTGATTCTGCTTGGAAA+TGG 0.460534 1.1:-1142725 MS.gene27038:CDS
GAGAATAAAATCAACAAGAC+TGG 0.464101 1.1:-1141616 MS.gene27038:CDS
CTCGGATGGTAGAGGTGAAT+CGG 0.465697 1.1:+1142554 None:intergenic
GAATCTTGATTTGAATTAGC+AGG 0.467650 1.1:+1141550 None:intergenic
AATTGATCCGAATCAGAGAT+AGG 0.472689 1.1:+1141865 None:intergenic
AGCTGCTGTTCGTGGGCACT+TGG 0.480789 1.1:-1143273 MS.gene27038:CDS
GTATTCTCAACAAGCTTCAC+CGG 0.482731 1.1:-1141704 MS.gene27038:CDS
TCCAAAGTCTCTGATCTGTC+AGG 0.487160 1.1:+1141985 None:intergenic
CCTGAAAACAAGATTGATCA+TGG 0.488495 1.1:-1141919 MS.gene27038:CDS
ATTTGCATTCGCAGGAGACT+TGG 0.490435 1.1:+1141504 None:intergenic
GTCAAATGTGATCCTTCTAA+AGG 0.490498 1.1:-1142744 MS.gene27038:CDS
ATCTGCTGTGATAATCATCC+AGG 0.492717 1.1:-1143455 MS.gene27038:CDS
ATTGTGTAGCTTGCATGAAA+CGG 0.493254 1.1:+1141335 None:intergenic
AGGTTAATCACATGCGGTGG+TGG 0.495955 1.1:-1144643 MS.gene27038:CDS
CTTACCAGTTGCACCAGGTA+AGG 0.496866 1.1:+1141225 None:intergenic
TTTGGTAGGTTCTTGATCAG+TGG 0.497450 1.1:+1141387 None:intergenic
TTGCCTAAGGATCAGCTGAA+TGG 0.499267 1.1:-1141448 MS.gene27038:CDS
CTTGGAAATGGTTGGAGAGA+TGG 0.499335 1.1:-1142713 MS.gene27038:CDS
CTACTACTATTATCTTTGGT+AGG 0.501445 1.1:+1141373 None:intergenic
GAGCATGTCGTGCTCGTACA+AGG 0.502104 1.1:+1143192 None:intergenic
GGCAGTCTTCTCTTCATCCT+CGG 0.508919 1.1:+1142536 None:intergenic
AACTGAAGAATAACTTGAGA+TGG 0.509161 1.1:+1142579 None:intergenic
TGTCACCGAAACTGAGAGTA+AGG 0.509505 1.1:-1143497 MS.gene27038:CDS
GAGGATTGAAAACTAATACT+TGG 0.509672 1.1:+1143619 None:intergenic
TCATCACTTTCTTGATTCTG+AGG 0.511188 1.1:+1142324 None:intergenic
CTCCAGCTCTGCAGGGCACA+AGG 0.513809 1.1:-1141171 MS.gene27038:CDS
TAGCACTCATGCATCTCAAT+CGG 0.515881 1.1:-1142613 MS.gene27038:CDS
GCCGAGTGGTTTGCTCGACC+AGG 0.516424 1.1:-1142148 MS.gene27038:CDS
ATCAGCATTTCTGGAAGGAT+AGG 0.517006 1.1:+1142053 None:intergenic
AATATCCTCTAATTGAAGCC+TGG 0.517071 1.1:+1143437 None:intergenic
TCTTCATCCTCGGATGGTAG+AGG 0.519415 1.1:+1142546 None:intergenic
GAATCATGATTTGCATTCGC+AGG 0.523017 1.1:+1141496 None:intergenic
ACAAACTGAGACTGTTCTGC+AGG 0.526275 1.1:-1141734 MS.gene27038:CDS
AATAAATGATAACTTGGAAG+AGG 0.528936 1.1:-1142460 MS.gene27038:CDS
ATTCTAATGATAAACGCGGT+TGG 0.530998 1.1:-1143738 MS.gene27038:CDS
GGATCACATTTGACATGGAT+AGG 0.532828 1.1:+1142753 None:intergenic
AGAAATGCTGATCCTGAAAG+TGG 0.536855 1.1:-1142042 MS.gene27038:CDS
GAGATAGGTAAATTAGAAGT+CGG 0.539880 1.1:+1141880 None:intergenic
TTGGTTAGAAGGCATGCTGT+TGG 0.542923 1.1:-1143254 MS.gene27038:CDS
AGACGCAGGGTACTGTCTGC+TGG 0.543441 1.1:-1141583 MS.gene27038:CDS
TGATTGAGCAGCAATAAATG+AGG 0.543692 1.1:+1142209 None:intergenic
CTCCTTATTTGCTGAAGATG+TGG 0.543734 1.1:+1143654 None:intergenic
TGATTCTGCTTGGAAATGGT+TGG 0.544910 1.1:-1142721 MS.gene27038:CDS
TTGGAAAGAATCAATTTCAG+TGG 0.550366 1.1:+1142395 None:intergenic
GTGACTCAACCGATACATCC+TGG 0.551810 1.1:+1142130 None:intergenic
GAAAGAATCAATTTCAGTGG+AGG 0.553284 1.1:+1142398 None:intergenic
AGTTGAAGAAATAGATAGTA+CGG 0.556045 1.1:+1142017 None:intergenic
ATGACAATTCCTGAATCTCA+AGG 0.562140 1.1:-1141673 MS.gene27038:CDS
TGAGTTGGTATCATAGTAAG+TGG 0.562597 1.1:+1142515 None:intergenic
GTCTTCTCTTCATCCTCGGA+TGG 0.563357 1.1:+1142540 None:intergenic
TTTGCTCGACCAGGATGTAT+CGG 0.563779 1.1:-1142139 MS.gene27038:CDS
AGATCACCATGTTGTTTCTG+AGG 0.564237 1.1:-1144608 MS.gene27038:intron
AAGTTGCAAGCTGCTGTTCG+TGG 0.564977 1.1:-1143281 MS.gene27038:CDS
TCAGCATTTCTGGAAGGATA+GGG 0.569303 1.1:+1142054 None:intergenic
CCCTGCTTACCAGTTGCACC+AGG 0.570056 1.1:+1141220 None:intergenic
GATTGAGCAGCAATAAATGA+GGG 0.573179 1.1:+1142210 None:intergenic
ATGGAATCAAATGCAAGTGT+CGG 0.577817 1.1:-1142363 MS.gene27038:CDS
TTAATCACATGCGGTGGTGG+TGG 0.579067 1.1:-1144640 MS.gene27038:CDS
AAGAAGAGACATTCCTTACC+TGG 0.579855 1.1:-1141238 MS.gene27038:CDS
TAGTAGAGAACAATTGCCTA+AGG 0.581315 1.1:-1141461 MS.gene27038:CDS
AAATGTGAAGCACACTTCTG+TGG 0.582438 1.1:-1142924 MS.gene27038:CDS
TCAGGATCAGCATTTCTGGA+AGG 0.588211 1.1:+1142048 None:intergenic
CCTGGTGCAACTGGTAAGCA+GGG 0.589383 1.1:-1141220 MS.gene27038:CDS
CTCGGTCTCTAGTTGGTCTG+AGG 0.591676 1.1:+1142272 None:intergenic
TAGAAGGATCACATTTGACA+TGG 0.592428 1.1:+1142748 None:intergenic
GCTCAGAAGTCACATTCAGA+TGG 0.597896 1.1:-1143173 MS.gene27038:CDS
AATCATGATTCAGGCTCAAG+AGG 0.598045 1.1:-1141484 MS.gene27038:CDS
TCTGCAGGGCACAAGGGCAA+TGG 0.599886 1.1:-1141164 MS.gene27038:CDS
AGAGGCTCCTCCCGAAAAGA+CGG 0.601939 1.1:-1142442 MS.gene27038:CDS
GATAATGACTGTTCGACACG+CGG 0.605175 1.1:+1141193 None:intergenic
CTGGATCAAGCAGTAGACGC+AGG 0.606218 1.1:-1141597 MS.gene27038:CDS
TGTTTAAGGTTAATCACATG+CGG 0.607247 1.1:-1144649 MS.gene27038:CDS
ATTATCACAGCAGATTCTGG+TGG 0.607983 1.1:+1143463 None:intergenic
ATGCCAAAGATTTAGTAGAA+GGG 0.611090 1.1:-1141951 MS.gene27038:CDS
AGTTGCAAGCTGCTGTTCGT+GGG 0.611911 1.1:-1143280 MS.gene27038:CDS
CTGAATCAACAACATTGCCA+CGG 0.613933 1.1:+1141824 None:intergenic
TGAATCAACAACATTGCCAC+GGG 0.613962 1.1:+1141825 None:intergenic
TCCAGCTCTGCAGGGCACAA+GGG 0.616076 1.1:-1141170 MS.gene27038:CDS
ATCTGGACTTGATCTTGGAG+AGG 0.618466 1.1:+1141285 None:intergenic
TTATTAGAGAAGATGAAGAG+AGG 0.625076 1.1:+1142478 None:intergenic
TGGTATCTCTGAGCAAACAT+CGG 0.629581 1.1:+1143528 None:intergenic
TCATTATCTCCAGCTCTGCA+GGG 0.630457 1.1:-1141178 MS.gene27038:CDS
GAAACTGTTAATGGCTCCCG+TGG 0.632617 1.1:-1141841 MS.gene27038:CDS
TATTCTCAACAAGCTTCACC+GGG 0.635415 1.1:-1141703 MS.gene27038:CDS
GTTCAAATTCAAATTCGGGT+AGG 0.637397 1.1:-1142170 MS.gene27038:CDS
GCAAGCTACACAATCTGCCA+AGG 0.638530 1.1:-1141326 MS.gene27038:CDS
AATTTGTACGACCGAACAGT+CGG 0.638857 1.1:-1142649 MS.gene27038:CDS
CGATTCACCTCTACCATCCG+AGG 0.641344 1.1:-1142553 MS.gene27038:CDS
CTCAGACCAACTAGAGACCG+AGG 0.645334 1.1:-1142271 MS.gene27038:CDS
GCTTGCTTGAAAGTGTGAGT+TGG 0.649171 1.1:+1142500 None:intergenic
TGGATCAAGCAGTAGACGCA+GGG 0.654626 1.1:-1141596 MS.gene27038:CDS
TCAAATTCGGGTAGGCCGAG+TGG 0.655550 1.1:-1142162 MS.gene27038:CDS
TCCTGGTCGAGCAAACCACT+CGG 0.660396 1.1:+1142147 None:intergenic
CACCGAAACTGAGAGTAAGG+TGG 0.667231 1.1:-1143494 MS.gene27038:CDS
TTAAGGTTAATCACATGCGG+TGG 0.672478 1.1:-1144646 MS.gene27038:CDS
TATCTCTGAGCAAACATCGG+AGG 0.674060 1.1:+1143531 None:intergenic
TCAGGCTCAAGAGTGTCTGT+CGG 0.675797 1.1:-1141529 MS.gene27038:CDS
AACAACATTAGGCTCAGCTG+AGG 0.679085 1.1:+1143600 None:intergenic
TCAGACCAACTAGAGACCGA+GGG 0.692845 1.1:-1142270 MS.gene27038:CDS
GATTCACCTCAGAAACAACA+TGG 0.720891 1.1:+1144602 None:intergenic
TGTGTAGCTTGCATGAAACG+GGG 0.721075 1.1:+1141337 None:intergenic
CAAACATCGGAGGATAACTG+TGG 0.737595 1.1:+1143541 None:intergenic
AAGGATTCTAATGATAAACG+CGG 0.747406 1.1:-1143742 MS.gene27038:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCACAAAAAAAAAAAAAAAA+AGG + chr1.1:1141530-1141549 None:intergenic 10.0%
!!! TTTTATTTTCTTTCTATTTT+TGG - chr1.1:1141407-1141426 MS.gene27038:CDS 10.0%
!!! CTATTAAACGAATAAAATTT+TGG + chr1.1:1142745-1142764 None:intergenic 15.0%
!!! TTCATAATTGAATAGTTTTA+AGG - chr1.1:1141449-1141468 MS.gene27038:CDS 15.0%
!! ACGAACAAAAGATTTATAAA+AGG + chr1.1:1142474-1142493 None:intergenic 20.0%
!! ATTTAGTATGAATGAACAAA+CGG + chr1.1:1142998-1143017 None:intergenic 20.0%
!! TTATGAATCAAAATCTTGTA+AGG - chr1.1:1142432-1142451 MS.gene27038:CDS 20.0%
!! TTCTCTAATAAATGATAACT+TGG - chr1.1:1143357-1143376 MS.gene27038:intron 20.0%
!! TTCTTTCCAAAATGAAATAA+TGG - chr1.1:1143441-1143460 MS.gene27038:CDS 20.0%
!!! TTATTTTTTTACTGTGGTTT+AGG - chr1.1:1142851-1142870 MS.gene27038:intron 20.0%
!!! TTGATTCCATTATTTCATTT+TGG + chr1.1:1143450-1143469 None:intergenic 20.0%
!!! TTTTATTCGTTTAATAGTTG+TGG - chr1.1:1142748-1142767 MS.gene27038:CDS 20.0%
! AAATGATGACTCAAAAACTA+CGG - chr1.1:1142676-1142695 MS.gene27038:CDS 25.0%
! AATAAATGATAACTTGGAAG+AGG - chr1.1:1143363-1143382 MS.gene27038:intron 25.0%
! AATAAGAAAAGAAACGAAGT+TGG + chr1.1:1141338-1141357 None:intergenic 25.0%
! AGAAAATTACATTTGGATCA+AGG - chr1.1:1143578-1143597 MS.gene27038:CDS 25.0%
! AGTTGAAGAAATAGATAGTA+CGG + chr1.1:1143809-1143828 None:intergenic 25.0%
! ATATACATCTTTATGCCAAT+GGG - chr1.1:1141760-1141779 MS.gene27038:CDS 25.0%
! ATTGCTACTACTATTATCTT+TGG + chr1.1:1144457-1144476 None:intergenic 25.0%
! GATCAATTAGAAACTGTTAA+TGG - chr1.1:1143973-1143992 MS.gene27038:intron 25.0%
! GATGTAAGTTGTACAATTTA+CGG - chr1.1:1141794-1141813 MS.gene27038:CDS 25.0%
! TAAAGAAGTAAAATCAAGCA+AGG + chr1.1:1141616-1141635 None:intergenic 25.0%
! TAATTTACCTATCTCTGATT+CGG - chr1.1:1143951-1143970 MS.gene27038:intron 25.0%
! TATATACATCTTTATGCCAA+TGG - chr1.1:1141759-1141778 MS.gene27038:CDS 25.0%
! TATCAACTAAGCACAAAAAA+CGG + chr1.1:1141820-1141839 None:intergenic 25.0%
!! AAATGTAATTTTCTTTCCCT+CGG + chr1.1:1143572-1143591 None:intergenic 25.0%
!! TGAAATCTACTTCTTGTTTA+AGG - chr1.1:1141160-1141179 MS.gene27038:CDS 25.0%
!! TTTTGTTCGTGTTTCTTTTT+AGG - chr1.1:1142484-1142503 MS.gene27038:CDS 25.0%
!! TTTTTCTTTAATGATGTTCC+AGG - chr1.1:1142056-1142075 MS.gene27038:CDS 25.0%
!!! GTCGTTTTATTTTTTTACTG+TGG - chr1.1:1142845-1142864 MS.gene27038:intron 25.0%
AACTGAAGAATAACTTGAGA+TGG + chr1.1:1143247-1143266 None:intergenic 30.0%
AAGGATTCTAATGATAAACG+CGG - chr1.1:1142081-1142100 MS.gene27038:CDS 30.0%
AGAGGAATTTGCATTTATCT+TGG + chr1.1:1144523-1144542 None:intergenic 30.0%
ATGCCAAAGATTTAGTAGAA+GGG - chr1.1:1143872-1143891 MS.gene27038:intron 30.0%
CAAATCTTCTCAACAACATT+AGG + chr1.1:1142237-1142256 None:intergenic 30.0%
CTACTACTATTATCTTTGGT+AGG + chr1.1:1144453-1144472 None:intergenic 30.0%
CTGAGTTCAAATTCAAATTC+GGG - chr1.1:1143649-1143668 MS.gene27038:CDS 30.0%
CTGTTTGGATAACATTGAAT+AGG - chr1.1:1141474-1141493 MS.gene27038:CDS 30.0%
GAGAATAAAATCAACAAGAC+TGG - chr1.1:1144207-1144226 MS.gene27038:intron 30.0%
GAGATAGGTAAATTAGAAGT+CGG + chr1.1:1143946-1143965 None:intergenic 30.0%
GAGGATTGAAAACTAATACT+TGG + chr1.1:1142207-1142226 None:intergenic 30.0%
GAGGGAAAGAAAATTACATT+TGG - chr1.1:1143571-1143590 MS.gene27038:CDS 30.0%
GCTAATTCAAATCAAGATTC+AGG - chr1.1:1144276-1144295 MS.gene27038:intron 30.0%
GCTGAGTTCAAATTCAAATT+CGG - chr1.1:1143648-1143667 MS.gene27038:CDS 30.0%
TATCCCTTCTACTAAATCTT+TGG + chr1.1:1143878-1143897 None:intergenic 30.0%
TTATTAGAGAAGATGAAGAG+AGG + chr1.1:1143348-1143367 None:intergenic 30.0%
TTGGAAAGAATCAATTTCAG+TGG + chr1.1:1143431-1143450 None:intergenic 30.0%
TTGTGAAAAACACTAAACCT+CGG + chr1.1:1141263-1141282 None:intergenic 30.0%
! ATCATATGTAACCGTCTTTT+CGG + chr1.1:1143395-1143414 None:intergenic 30.0%
! GAATCTTGATTTGAATTAGC+AGG + chr1.1:1144276-1144295 None:intergenic 30.0%
! TGTTTAAGGTTAATCACATG+CGG - chr1.1:1141174-1141193 MS.gene27038:CDS 30.0%
! TTTGGTATGTTTCTTTTCTG+AGG - chr1.1:1142407-1142426 MS.gene27038:CDS 30.0%
!! TGAAATTTTGATCGTGATTC+AGG - chr1.1:1141993-1142012 MS.gene27038:CDS 30.0%
!!! AATAGTTTTAAGGTGCTGTT+TGG - chr1.1:1141459-1141478 MS.gene27038:CDS 30.0%
!!! ACATGGATAGGTTTGTTTTT+TGG + chr1.1:1143061-1143080 None:intergenic 30.0%
AATATCCTCTAATTGAAGCC+TGG + chr1.1:1142389-1142408 None:intergenic 35.0%
AATTGATCCGAATCAGAGAT+AGG + chr1.1:1143961-1143980 None:intergenic 35.0%
ATGACAATTCCTGAATCTCA+AGG - chr1.1:1144150-1144169 MS.gene27038:intron 35.0%
ATGATTATCACAGCAGATTC+TGG + chr1.1:1142366-1142385 None:intergenic 35.0%
ATGGAATCAAATGCAAGTGT+CGG - chr1.1:1143460-1143479 MS.gene27038:CDS 35.0%
ATTCTAATGATAAACGCGGT+TGG - chr1.1:1142085-1142104 MS.gene27038:CDS 35.0%
ATTTGCATTTATCTTGGCCT+TGG + chr1.1:1144517-1144536 None:intergenic 35.0%
CCTGAAAACAAGATTGATCA+TGG - chr1.1:1143904-1143923 MS.gene27038:intron 35.0%
GAAAGAATCAATTTCAGTGG+AGG + chr1.1:1143428-1143447 None:intergenic 35.0%
GATGCCAAAGATTTAGTAGA+AGG - chr1.1:1143871-1143890 MS.gene27038:intron 35.0%
GATTGAGCAGCAATAAATGA+GGG + chr1.1:1143616-1143635 None:intergenic 35.0%
GGCTTCAATTAGAGGATATT+TGG - chr1.1:1142389-1142408 MS.gene27038:CDS 35.0%
GTCAAATGTGATCCTTCTAA+AGG - chr1.1:1143079-1143098 MS.gene27038:intron 35.0%
GTTCAAATTCAAATTCGGGT+AGG - chr1.1:1143653-1143672 MS.gene27038:CDS 35.0%
TAGAAGGATCACATTTGACA+TGG + chr1.1:1143078-1143097 None:intergenic 35.0%
TAGTAGAGAACAATTGCCTA+AGG - chr1.1:1144362-1144381 MS.gene27038:intron 35.0%
TATCATTAGAATCCTTGACC+TGG + chr1.1:1142077-1142096 None:intergenic 35.0%
TCATCACTTTCTTGATTCTG+AGG + chr1.1:1143502-1143521 None:intergenic 35.0%
TGATTGAGCAGCAATAAATG+AGG + chr1.1:1143617-1143636 None:intergenic 35.0%
TTTAATGATGTTCCAGGTCA+AGG - chr1.1:1142062-1142081 MS.gene27038:CDS 35.0%
! AAGTCAGATGCAATTTTCTC+AGG + chr1.1:1144060-1144079 None:intergenic 35.0%
! ATTGTGTAGCTTGCATGAAA+CGG + chr1.1:1144491-1144510 None:intergenic 35.0%
! TCATATGTAACCGTCTTTTC+GGG + chr1.1:1143394-1143413 None:intergenic 35.0%
! TCTTGATTCTGAGGAGAATT+AGG + chr1.1:1143493-1143512 None:intergenic 35.0%
!! TGAGTTGGTATCATAGTAAG+TGG + chr1.1:1143311-1143330 None:intergenic 35.0%
!! TTCGTGTTTCTTTTTAGGCT+CGG - chr1.1:1142489-1142508 MS.gene27038:CDS 35.0%
!!! CCATGATCAATCTTGTTTTC+AGG + chr1.1:1143907-1143926 None:intergenic 35.0%
AAAACGACACACTTAGAGCA+AGG + chr1.1:1142833-1142852 None:intergenic 40.0%
AAACTTGATCTCGTGGATCT+AGG + chr1.1:1141871-1141890 None:intergenic 40.0%
AAATGTGAAGCACACTTCTG+TGG - chr1.1:1142899-1142918 MS.gene27038:CDS 40.0%
AACACCTTCAAGTCAGGTTT+CGG - chr1.1:1144173-1144192 MS.gene27038:intron 40.0%
AAGAAGAGACATTCCTTACC+TGG - chr1.1:1144585-1144604 MS.gene27038:intron 40.0%
AAGGTGATTCTGCTTGGAAA+TGG - chr1.1:1143098-1143117 MS.gene27038:intron 40.0%
AATCATGATTCAGGCTCAAG+AGG - chr1.1:1144339-1144358 MS.gene27038:intron 40.0%
AATTTGTACGACCGAACAGT+CGG - chr1.1:1143174-1143193 MS.gene27038:CDS 40.0%
ACAAACGGATGACGTTAAAC+AGG + chr1.1:1142983-1143002 None:intergenic 40.0%
ACTTTCAGGATCAGCATTTC+TGG + chr1.1:1143782-1143801 None:intergenic 40.0%
AGAAATGCTGATCCTGAAAG+TGG - chr1.1:1143781-1143800 MS.gene27038:intron 40.0%
AGATGCATGAGTGCTATCTT+TGG + chr1.1:1143206-1143225 None:intergenic 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr1.1:1142381-1142400 MS.gene27038:CDS 40.0%
ATCCACCTTACTCTCAGTTT+CGG + chr1.1:1142334-1142353 None:intergenic 40.0%
ATCTGCTGTGATAATCATCC+AGG - chr1.1:1142368-1142387 MS.gene27038:CDS 40.0%
ATGCACAAAACTTGATCTCG+TGG + chr1.1:1141878-1141897 None:intergenic 40.0%
ATTATCACAGCAGATTCTGG+TGG + chr1.1:1142363-1142382 None:intergenic 40.0%
ATTCCAACAGCTTCAATGGA+AGG + chr1.1:1143033-1143052 None:intergenic 40.0%
CAAGCAGAATCACCTTTAGA+AGG + chr1.1:1143094-1143113 None:intergenic 40.0%
CTCTCTCTTAGATAATTCCG+AGG - chr1.1:1141243-1141262 MS.gene27038:CDS 40.0%
CTGAATCAACAACATTGCCA+CGG + chr1.1:1144002-1144021 None:intergenic 40.0%
GACCACATCTTCAGCAAATA+AGG - chr1.1:1142167-1142186 MS.gene27038:CDS 40.0%
GATTCACCTCAGAAACAACA+TGG + chr1.1:1141224-1141243 None:intergenic 40.0%
GCGAATGCAAATCATGATTC+AGG - chr1.1:1144330-1144349 MS.gene27038:intron 40.0%
GGAAAGAGACGCAATTCATT+TGG - chr1.1:1144396-1144415 MS.gene27038:intron 40.0%
GGAATTGTCATATAGCTTCC+CGG + chr1.1:1144141-1144160 None:intergenic 40.0%
GGAGAGATGGATGTTTGTTT+CGG - chr1.1:1143123-1143142 MS.gene27038:intron 40.0%
GGATCACATTTGACATGGAT+AGG + chr1.1:1143073-1143092 None:intergenic 40.0%
GTATTCTCAACAAGCTTCAC+CGG - chr1.1:1144119-1144138 MS.gene27038:intron 40.0%
GTTTCGGTGACAATTGTTTC+TGG + chr1.1:1142318-1142337 None:intergenic 40.0%
TAGCACTCATGCATCTCAAT+CGG - chr1.1:1143210-1143229 MS.gene27038:CDS 40.0%
TATTCTCAACAAGCTTCACC+GGG - chr1.1:1144120-1144139 MS.gene27038:intron 40.0%
TGAATCAACAACATTGCCAC+GGG + chr1.1:1144001-1144020 None:intergenic 40.0%
TGATTCTGCTTGGAAATGGT+TGG - chr1.1:1143102-1143121 MS.gene27038:intron 40.0%
TGGTATCTCTGAGCAAACAT+CGG + chr1.1:1142298-1142317 None:intergenic 40.0%
TTAAGGTTAATCACATGCGG+TGG - chr1.1:1141177-1141196 MS.gene27038:CDS 40.0%
TTGGTAGGTTCTTGATCAGT+GGG + chr1.1:1144438-1144457 None:intergenic 40.0%
TTGGTTGCATGAAACATCCT+CGG + chr1.1:1141319-1141338 None:intergenic 40.0%
TTTCCATTCAGCTGATCCTT+AGG + chr1.1:1144381-1144400 None:intergenic 40.0%
TTTCCTTCCATTGAAGCTGT+TGG - chr1.1:1143027-1143046 MS.gene27038:intron 40.0%
TTTGGTAGGTTCTTGATCAG+TGG + chr1.1:1144439-1144458 None:intergenic 40.0%
! ATAAACGCGGTTGGAGTTTT+CGG - chr1.1:1142094-1142113 MS.gene27038:CDS 40.0%
! ATCAGCATTTCTGGAAGGAT+AGG + chr1.1:1143773-1143792 None:intergenic 40.0%
! CAGCAATAAGTTTGCTTCTC+AGG - chr1.1:1142932-1142951 MS.gene27038:CDS 40.0%
! CTCCTTATTTGCTGAAGATG+TGG + chr1.1:1142172-1142191 None:intergenic 40.0%
! CTTCTAAAGGTGATTCTGCT+TGG - chr1.1:1143092-1143111 MS.gene27038:intron 40.0%
! GAATCATGATTTGCATTCGC+AGG + chr1.1:1144330-1144349 None:intergenic 40.0%
! GTTGATTCCAACAGCTTCAA+TGG + chr1.1:1143037-1143056 None:intergenic 40.0%
! TCAGCATTTCTGGAAGGATA+GGG + chr1.1:1143772-1143791 None:intergenic 40.0%
! TTGTGTAGCTTGCATGAAAC+GGG + chr1.1:1144490-1144509 None:intergenic 40.0%
!! AGATCACCATGTTGTTTCTG+AGG - chr1.1:1141215-1141234 MS.gene27038:CDS 40.0%
!! GTGTGTTTTTGTTTGATCCG+AGG - chr1.1:1141299-1141318 MS.gene27038:CDS 40.0%
AACAACATTAGGCTCAGCTG+AGG + chr1.1:1142226-1142245 None:intergenic 45.0%
ACAAACTGAGACTGTTCTGC+AGG - chr1.1:1144089-1144108 MS.gene27038:intron 45.0%
ACCTGACAGATCAGAGACTT+TGG - chr1.1:1143837-1143856 MS.gene27038:intron 45.0%
ATCTGGACTTGATCTTGGAG+AGG + chr1.1:1144541-1144560 None:intergenic 45.0%
ATGTCAGTGTCATGCACATC+TGG + chr1.1:1144558-1144577 None:intergenic 45.0%
ATTTGCATTCGCAGGAGACT+TGG + chr1.1:1144322-1144341 None:intergenic 45.0%
CAAACATCGGAGGATAACTG+TGG + chr1.1:1142285-1142304 None:intergenic 45.0%
CATCAAAAGTCACAGCCCAT+TGG + chr1.1:1141778-1141797 None:intergenic 45.0%
CTTGGAAATGGTTGGAGAGA+TGG - chr1.1:1143110-1143129 MS.gene27038:intron 45.0%
GACTGTTCGGTCGTACAAAT+TGG + chr1.1:1143175-1143194 None:intergenic 45.0%
GATAATGACTGTTCGACACG+CGG + chr1.1:1144633-1144652 None:intergenic 45.0%
GATAGTACGGTACCACTTTC+AGG + chr1.1:1143796-1143815 None:intergenic 45.0%
GCTCAGAAGTCACATTCAGA+TGG - chr1.1:1142650-1142669 MS.gene27038:CDS 45.0%
TATCTCTGAGCAAACATCGG+AGG + chr1.1:1142295-1142314 None:intergenic 45.0%
TCAAGGAACACCTTCAAGTC+AGG - chr1.1:1144167-1144186 MS.gene27038:intron 45.0%
TCATTATCTCCAGCTCTGCA+GGG - chr1.1:1144645-1144664 MS.gene27038:CDS 45.0%
TCCAAAGTCTCTGATCTGTC+AGG + chr1.1:1143841-1143860 None:intergenic 45.0%
TGCACATCTGGACTTGATCT+TGG + chr1.1:1144546-1144565 None:intergenic 45.0%
TGTCACCGAAACTGAGAGTA+AGG - chr1.1:1142326-1142345 MS.gene27038:CDS 45.0%
TTGCCTAAGGATCAGCTGAA+TGG - chr1.1:1144375-1144394 MS.gene27038:intron 45.0%
TTTGCTCGACCAGGATGTAT+CGG - chr1.1:1143684-1143703 MS.gene27038:CDS 45.0%
! GCTTGCTTGAAAGTGTGAGT+TGG + chr1.1:1143326-1143345 None:intergenic 45.0%
! GTTTTCGGAAGAGATCTGCA+AGG - chr1.1:1142109-1142128 MS.gene27038:CDS 45.0%
! TCAGGATCAGCATTTCTGGA+AGG + chr1.1:1143778-1143797 None:intergenic 45.0%
! TCGTACAAGGAGCTGCATTT+TGG + chr1.1:1142621-1142640 None:intergenic 45.0%
! TGTGTAGCTTGCATGAAACG+GGG + chr1.1:1144489-1144508 None:intergenic 45.0%
! TTCACCGAAACCTGACTTGA+AGG + chr1.1:1144180-1144199 None:intergenic 45.0%
! TTGGTTAGAAGGCATGCTGT+TGG - chr1.1:1142569-1142588 MS.gene27038:CDS 45.0%
! TTTGGTTTCGTCCGACTGTT+CGG + chr1.1:1143188-1143207 None:intergenic 45.0%
!! GAAGGTGTTCCTTGAGATTC+AGG + chr1.1:1144162-1144181 None:intergenic 45.0%
!! TATGTAACCGTCTTTTCGGG+AGG + chr1.1:1143391-1143410 None:intergenic 45.0%
AAGTTGCAAGCTGCTGTTCG+TGG - chr1.1:1142542-1142561 MS.gene27038:CDS 50.0%
AGGCTCAACAGCATGCTCTT+TGG + chr1.1:1144040-1144059 None:intergenic 50.0%
AGGTTAATCACATGCGGTGG+TGG - chr1.1:1141180-1141199 MS.gene27038:CDS 50.0%
AGTTGCAAGCTGCTGTTCGT+GGG - chr1.1:1142543-1142562 MS.gene27038:CDS 50.0%
CACCGAAACTGAGAGTAAGG+TGG - chr1.1:1142329-1142348 MS.gene27038:CDS 50.0%
CATTCCTTACCTGGTGCAAC+TGG - chr1.1:1144594-1144613 MS.gene27038:intron 50.0%
CTCGGATGGTAGAGGTGAAT+CGG + chr1.1:1143272-1143291 None:intergenic 50.0%
CTTACCAGTTGCACCAGGTA+AGG + chr1.1:1144601-1144620 None:intergenic 50.0%
GAAACTGTTAATGGCTCCCG+TGG - chr1.1:1143982-1144001 MS.gene27038:intron 50.0%
GCAAGCTACACAATCTGCCA+AGG - chr1.1:1144497-1144516 MS.gene27038:intron 50.0%
GGCAGTCTTCTCTTCATCCT+CGG + chr1.1:1143290-1143309 None:intergenic 50.0%
GTCATTATCTCCAGCTCTGC+AGG - chr1.1:1144644-1144663 MS.gene27038:CDS 50.0%
GTCTTCTCTTCATCCTCGGA+TGG + chr1.1:1143286-1143305 None:intergenic 50.0%
GTGACTCAACCGATACATCC+TGG + chr1.1:1143696-1143715 None:intergenic 50.0%
TCAGACCAACTAGAGACCGA+GGG - chr1.1:1143553-1143572 MS.gene27038:CDS 50.0%
TCTTCATCCTCGGATGGTAG+AGG + chr1.1:1143280-1143299 None:intergenic 50.0%
TCTTTCCCTCGGTCTCTAGT+TGG + chr1.1:1143561-1143580 None:intergenic 50.0%
TGATCTCGTGGATCTAGGCT+CGG + chr1.1:1141866-1141885 None:intergenic 50.0%
TGGATCAAGCAGTAGACGCA+GGG - chr1.1:1144227-1144246 MS.gene27038:intron 50.0%
TTCGTGGGCACTTGGTTAGA+AGG - chr1.1:1142558-1142577 MS.gene27038:CDS 50.0%
! GGTTCTTGATCAGTGGGTTC+AGG + chr1.1:1144432-1144451 None:intergenic 50.0%
! TTAATCACATGCGGTGGTGG+TGG - chr1.1:1141183-1141202 MS.gene27038:CDS 50.0%
!! GCATGCTCTTTGGAGTTCTC+AGG + chr1.1:1144030-1144049 None:intergenic 50.0%
!! TCAGGCTCAAGAGTGTCTGT+CGG - chr1.1:1144294-1144313 MS.gene27038:intron 50.0%
ACCTGGTGCAACTGGTAAGC+AGG - chr1.1:1144602-1144621 MS.gene27038:intron 55.0%
AGAGGCTCCTCCCGAAAAGA+CGG - chr1.1:1143381-1143400 MS.gene27038:intron 55.0%
CCTGGTGCAACTGGTAAGCA+GGG - chr1.1:1144603-1144622 MS.gene27038:intron 55.0%
CGATTCACCTCTACCATCCG+AGG - chr1.1:1143270-1143289 MS.gene27038:CDS 55.0%
CTCAGACCAACTAGAGACCG+AGG - chr1.1:1143552-1143571 MS.gene27038:CDS 55.0%
CTGGATCAAGCAGTAGACGC+AGG - chr1.1:1144226-1144245 MS.gene27038:intron 55.0%
GAGCATGTCGTGCTCGTACA+AGG + chr1.1:1142634-1142653 None:intergenic 55.0%
TCAAATTCGGGTAGGCCGAG+TGG - chr1.1:1143661-1143680 MS.gene27038:CDS 55.0%
TCCTGGTCGAGCAAACCACT+CGG + chr1.1:1143679-1143698 None:intergenic 55.0%
! CTCGGTCTCTAGTTGGTCTG+AGG + chr1.1:1143554-1143573 None:intergenic 55.0%
AGCTGCTGTTCGTGGGCACT+TGG - chr1.1:1142550-1142569 MS.gene27038:CDS 60.0%
CCCTGCTTACCAGTTGCACC+AGG + chr1.1:1144606-1144625 None:intergenic 60.0%
TCCAGCTCTGCAGGGCACAA+GGG - chr1.1:1144653-1144672 MS.gene27038:CDS 60.0%
TCGTGGATCTAGGCTCGGCA+TGG + chr1.1:1141861-1141880 None:intergenic 60.0%
TCTGCAGGGCACAAGGGCAA+TGG - chr1.1:1144659-1144678 MS.gene27038:CDS 60.0%
!! AGACGCAGGGTACTGTCTGC+TGG - chr1.1:1144240-1144259 MS.gene27038:intron 60.0%
CTCCAGCTCTGCAGGGCACA+AGG - chr1.1:1144652-1144671 MS.gene27038:CDS 65.0%
!! GCCGAGTGGTTTGCTCGACC+AGG - chr1.1:1143675-1143694 MS.gene27038:CDS 65.0%
GCCCTTGTGCCCTGCAGAGC+TGG + chr1.1:1144657-1144676 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 1141156 1144689 1141156 ID=MS.gene27038
chr1.1 mRNA 1141156 1144689 1141156 ID=MS.gene27038.t1;Parent=MS.gene27038
chr1.1 exon 1144609 1144689 1144609 ID=MS.gene27038.t1.exon1;Parent=MS.gene27038.t1
chr1.1 CDS 1144609 1144689 1144609 ID=cds.MS.gene27038.t1;Parent=MS.gene27038.t1
chr1.1 exon 1143435 1143767 1143435 ID=MS.gene27038.t1.exon2;Parent=MS.gene27038.t1
chr1.1 CDS 1143435 1143767 1143435 ID=cds.MS.gene27038.t1;Parent=MS.gene27038.t1
chr1.1 exon 1143148 1143339 1143148 ID=MS.gene27038.t1.exon3;Parent=MS.gene27038.t1
chr1.1 CDS 1143148 1143339 1143148 ID=cds.MS.gene27038.t1;Parent=MS.gene27038.t1
chr1.1 exon 1142892 1142972 1142892 ID=MS.gene27038.t1.exon4;Parent=MS.gene27038.t1
chr1.1 CDS 1142892 1142972 1142892 ID=cds.MS.gene27038.t1;Parent=MS.gene27038.t1
chr1.1 exon 1141156 1142802 1141156 ID=MS.gene27038.t1.exon5;Parent=MS.gene27038.t1
chr1.1 CDS 1141156 1142802 1141156 ID=cds.MS.gene27038.t1;Parent=MS.gene27038.t1
Gene Sequence

>MS.gene27038

ATGGTGAAATCTACTTCTTGTTTAAGGTTAATCACATGCGGTGGTGGTGGTGACAAAGAAGATCACCATGTTGTTTCTGAGGTGAATCTCTCTCTTAGATAATTCCGAGGTTTAGTGTTTTTCACAATTTTTCAGTTTTATGTGTGTGTTTTTGTTTGATCCGAGGATGTTTCATGCAACCAACTTCGTTTCTTTTCTTATTATCACGTTTCTTGCATTCATTAATTACTTAATTAATTTGCTGTTTAATGTTTTATTTTCTTTCTATTTTTGGATTTATATTCAAGATTTCGTTCATAATTGAATAGTTTTAAGGTGCTGTTTGGATAACATTGAATAGGAAAATTCATGTTTTTTTTTTTTTTGAATTTCCTTTTTTTTTTTTTTTTTGTGATCTTTGATCTCAAGATTAGTAATGAATATCATGTAGTTGATGATGCTCTCTGAAAATCATTTTCCTTGCTTGATTTTACTTCTTTACTAATTTTTCTTGTTTATTTTGATAATCACTAGTATTTCACGATGCTAGAAAATCTGATTATTGTGAATTAATTAGTATTTTTCACATAATAATTGAAGTAAATTAAATTCATGAGTGTGAATTATATACATCTTTATGCCAATGGGCTGTGACTTTTGATGTAAGTTGTACAATTTACGGCCGTTTTTTGTGCTTAGTTGATATGAACTTAGTTATTTGAACCATGCCGAGCCTAGATCCACGAGATCAAGTTTTGTGCATAAAACTTAGTTATAAACATCTAGATAAAGTTTGTGCATCGTATAAGTAAAATGAGATAGTTGCACATTGTACTGTAGTAAGTTTTATTGAATAAGTGAAATTTTGATCGTGATTCAGGAAATATATATTTATGCATTCAAGTTTGTTCTCACAATTGATTTTTCTTTAATGATGTTCCAGGTCAAGGATTCTAATGATAAACGCGGTTGGAGTTTTCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAACAACAGAGACCACATCTTCAGCAAATAAGGAGACTTCAGAATATCCAAGTATTAGTTTTCAATCCTCAGCTGAGCCTAATGTTGTTGAGAAGATTTGTACGACAGATTTCTCTAATGAGAAGCCACAGTTATCCTCCGATGTTTGCTCAGAGATACCAGAAACAATTGTCACCGAAACTGAGAGTAAGGTGGATGTCAATCCACCAGAATCTGCTGTGATAATCATCCAGGCTTCAATTAGAGGATATTTGGTATGTTTCTTTTCTGAGGTTTTATGAATCAAAATCTTGTAAGGAGAAAACGCTCATTTTCCTTTTATAAATCTTTTGTTCGTGTTTCTTTTTAGGCTCGGAGAGCACTTCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTTAGAAGGCATGCTGTTGGAACATTGCGATGTGTTCAAGCTATTGCCAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACATTCAGATGGAAAAAATGATGACTCAAAAACTACGGTATATCTATTTGAATTTACTTCGTAGTTACTAATTTCATGATACCAAAATTTTATTCGTTTAATAGTTGTGGTTTCATTGAAGAGATATGTTATTACATTTACGTTACTATCAGATGATATGTGCTGCAAGCCTTGCTCTAAGTGTGTCGTTTTATTTTTTTACTGTGGTTTAGGATAATGAGCATTACACTGCTGAATCAAATGTGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTTCTCAGGTACAATTAACATATTGTTTGTTTTGCCTGTTTAACGTCATCCGTTTGTTCATTCATACTAAATCTTCTGTTGTTTCCTTCCATTGAAGCTGTTGGAATCAACACCAAAAAACAAACCTATCCATGTCAAATGTGATCCTTCTAAAGGTGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTTTGTTTCGGCAAAAGATTCTGCAGAAGATAAAAAGCCAATTTGTACGACCGAACAGTCGGACGAAACCAAAGATAGCACTCATGCATCTCAATCGGAAACAGATATTCCATCTCAAGTTATTCTTCAGTTAGCCGATTCACCTCTACCATCCGAGGATGAAGAGAAGACTGCCACTTACTATGATACCAACTCACACTTTCAAGCAAGCCTCTCTTCATCTTCTCTAATAAATGATAACTTGGAAGAGGCTCCTCCCGAAAAGACGGTTACATATGATTCTAAAGTAACCTCCACTGAAATTGATTCTTTCCAAAATGAAATAATGGAATCAAATGCAAGTGTCGGACATGAGCCTAATTCTCCTCAGAATCAAGAAAGTGATGAACAGTACAAACAATCAACGAAAGCATTTGCCTCAGACCAACTAGAGACCGAGGGAAAGAAAATTACATTTGGATCAAGGAAGTTAAGCAATCCCTCATTTATTGCTGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATTCAAATTCGGGTAGGCCGAGTGGTTTGCTCGACCAGGATGTATCGGTTGAGTCACAAGCAGATAGTGCATATATATCAAAAGAGTTCATTTCATCTGAGAATTCTATGCCCTATCCTTCCAGAAATGCTGATCCTGAAAGTGGTACCGTACTATCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAATCGAGCACGATGCCAAAGATTTAGTAGAAGGGATAGTTAATCCTGAAAACAAGATTGATCATGGTGTTGAAGCAAATACTCCGACTTCTAATTTACCTATCTCTGATTCGGATCAATTAGAAACTGTTAATGGCTCCCGTGGCAATGTTGTTGATTCAGTGATGCCTGAGAACTCCAAAGAGCATGCTGTTGAGCCTGAGAAAATTGCATCTGACTTGTTTAGAGAACAAACTGAGACTGTTCTGCAGGATTTCACGTATTCTCAACAAGCTTCACCGGGAAGCTATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCGGTGAAACAAAAAGAGAATAAAATCAACAAGACTGGATCAAGCAGTAGACGCAGGGTACTGTCTGCTGGTAACAAGTCTCCTGCTAATTCAAATCAAGATTCAGGCTCAAGAGTGTCTGTCGGTACCAAGTCTCCTGCGAATGCAAATCATGATTCAGGCTCAAGAGGTAGTAGAGAACAATTGCCTAAGGATCAGCTGAATGGAAAGAGACGCAATTCATTTGGCTCAATAAAACCTGAACCCACTGATCAAGAACCTACCAAAGATAATAGTAGTAGCAATAATACTCTTCCCCGTTTCATGCAAGCTACACAATCTGCCAAGGCCAAGATAAATGCAAATTCCTCTCCAAGATCAAGTCCAGATGTGCATGACACTGACATTAATATCAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAAGCAGGGTTCTCCGCGTGTCGAACAGTCATTATCTCCAGCTCTGCAGGGCACAAGGGCAATGGTTCATCTG
Protein sequence

>MS.gene27038.t1

MVKSTSCLRLITCGGGGDKEDHHVVSEVKDSNDKRGWSFRKRSARHRVLSNTVITTETTSSANKETSEYPSISFQSSAEPNVVEKICTTDFSNEKPQLSSDVCSEIPETIVTETESKVDVNPPESAVIIIQASIRGYLARRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQLLVRARHAQKSHSDGKNDDSKTTDNEHYTAESNVKHTSVEKLLSNKFASQLLESTPKNKPIHVKCDPSKGDSAWKWLERWMFVSAKDSAEDKKPICTTEQSDETKDSTHASQSETDIPSQVILQLADSPLPSEDEEKTATYYDTNSHFQASLSSSSLINDNLEEAPPEKTVTYDSKVTSTEIDSFQNEIMESNASVGHEPNSPQNQESDEQYKQSTKAFASDQLETEGKKITFGSRKLSNPSFIAAQSKFEELSSNSNSGRPSGLLDQDVSVESQADSAYISKEFISSENSMPYPSRNADPESGTVLSISSTLDSPDRSETLEIEHDAKDLVEGIVNPENKIDHGVEANTPTSNLPISDSDQLETVNGSRGNVVDSVMPENSKEHAVEPEKIASDLFREQTETVLQDFTYSQQASPGSYMTIPESQGTPSSQVSVKQKENKINKTGSSSRRRVLSAGNKSPANSNQDSGSRVSVGTKSPANANHDSGSRGSREQLPKDQLNGKRRNSFGSIKPEPTDQEPTKDNSSSNNTLPRFMQATQSAKAKINANSSPRSSPDVHDTDINIKKRHSLPGATGKQGSPRVEQSLSPALQGTRAMVHL