Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27118.t1 | KEH40270.1 | 98.7 | 460 | 6 | 0 | 1 | 460 | 25 | 484 | 1.00E-261 | 912.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27118.t1 | Q9SRE5 | 59.0 | 463 | 139 | 9 | 1 | 458 | 8 | 424 | 1.3e-129 | 464.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27118.t1 | A0A072VQ62 | 98.7 | 460 | 6 | 0 | 1 | 460 | 25 | 484 | 7.3e-262 | 912.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050710 | MS.gene27118 | 0.810278 | 1.25E-50 | -1.69E-46 |
| MS.gene053108 | MS.gene27118 | 0.804789 | 1.82E-49 | -1.69E-46 |
| MS.gene05537 | MS.gene27118 | 0.818345 | 2.06E-52 | -1.69E-46 |
| MS.gene056618 | MS.gene27118 | 0.80846 | 3.06E-50 | -1.69E-46 |
| MS.gene057669 | MS.gene27118 | 0.817398 | 3.37E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27118.t1 | MTR_1g026560 | 98.696 | 460 | 6 | 0 | 1 | 460 | 25 | 484 | 0.0 | 942 |
| MS.gene27118.t1 | MTR_6g045493 | 46.948 | 213 | 101 | 4 | 1 | 206 | 33 | 240 | 5.88e-40 | 150 |
| MS.gene27118.t1 | MTR_8g098495 | 47.264 | 201 | 94 | 5 | 1 | 195 | 43 | 237 | 6.96e-38 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27118.t1 | AT1G76660 | 59.395 | 463 | 137 | 10 | 1 | 458 | 8 | 424 | 1.13e-170 | 486 |
| MS.gene27118.t1 | AT1G76660 | 54.521 | 365 | 114 | 9 | 98 | 458 | 1 | 317 | 1.04e-116 | 345 |
| MS.gene27118.t1 | AT5G52430 | 43.946 | 223 | 104 | 8 | 1 | 208 | 33 | 249 | 2.56e-34 | 134 |
| MS.gene27118.t1 | AT1G63720 | 35.472 | 265 | 152 | 6 | 1 | 261 | 37 | 286 | 6.27e-31 | 122 |
| MS.gene27118.t1 | AT4G25620 | 42.326 | 215 | 98 | 9 | 1 | 202 | 32 | 233 | 5.07e-22 | 98.6 |
Find 141 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGGGTCTGGGAGGGTTTC+TGG | -0.012729 | 1.1:+51710 | MS.gene27118:CDS |
| TTGATATTTCCTGCAGATTC+TGG | 0.185494 | 1.1:-52710 | None:intergenic |
| TACCTATGCACAATTCTATT+TGG | 0.226625 | 1.1:+51790 | MS.gene27118:CDS |
| TCATCACTGTATCCTGAAAA+TGG | 0.253710 | 1.1:+51674 | MS.gene27118:CDS |
| CCAGCCACTTGGGGCCCATT+TGG | 0.259334 | 1.1:-51152 | None:intergenic |
| TCACCAGAGTTCCTTGATAT+TGG | 0.281584 | 1.1:-51602 | None:intergenic |
| TATGAGGGAATGGAGGATTT+TGG | 0.301503 | 1.1:-51814 | None:intergenic |
| TTCTTTGCTTGCTTGCCAAC+TGG | 0.303881 | 1.1:-52169 | None:intergenic |
| CTGGGTCTGGGAGGGTTTCT+GGG | 0.319925 | 1.1:+51711 | MS.gene27118:CDS |
| AGGCTACTGGCAGGACTTCC+AGG | 0.328429 | 1.1:-51572 | None:intergenic |
| TTGGGGCCCATTTGGTTGAC+TGG | 0.328650 | 1.1:-51144 | None:intergenic |
| CTGGCTGATCCATTATTATC+AGG | 0.333530 | 1.1:-51125 | None:intergenic |
| TCCTTGATATTGGAGATATA+AGG | 0.338998 | 1.1:-51592 | None:intergenic |
| AAAAGATGGGGAGGTTGTTT+GGG | 0.341988 | 1.1:+51041 | MS.gene27118:CDS |
| TCTCGTATTCCTGATAATAA+TGG | 0.351751 | 1.1:+51116 | MS.gene27118:CDS |
| ATGCAGAGGTTGACTATAGA+AGG | 0.361091 | 1.1:+52752 | MS.gene27118:CDS |
| CCAAATGGGCCCCAAGTGGC+TGG | 0.362429 | 1.1:+51152 | MS.gene27118:CDS |
| TCCATGAGAGTATGATTATC+AGG | 0.365296 | 1.1:-52655 | None:intergenic |
| AAGTGAGCAAAAGGTACATC+TGG | 0.369839 | 1.1:-51464 | None:intergenic |
| CGACACTAATGATGTTACTA+TGG | 0.373527 | 1.1:+51736 | MS.gene27118:CDS |
| ACCATGATGCCCTTGACCTC+TGG | 0.374021 | 1.1:+52037 | MS.gene27118:CDS |
| GCTCAATCTACGGGTGGAAA+TGG | 0.386458 | 1.1:+51872 | MS.gene27118:CDS |
| ATTTCTTCCACATCTTGCTT+AGG | 0.387788 | 1.1:-51920 | None:intergenic |
| AAATATCAGAGGACTGGGTC+TGG | 0.392276 | 1.1:+51698 | MS.gene27118:CDS |
| TGGAAGAAATAGAAGCTTAC+CGG | 0.393649 | 1.1:+51933 | MS.gene27118:CDS |
| GAAGCTTACCGGGCATCCTT+TGG | 0.402159 | 1.1:+51944 | MS.gene27118:CDS |
| TTGAATTCTTTCATCAATGA+AGG | 0.406547 | 1.1:-52088 | None:intergenic |
| CTTAATCTGCCACCATTATG+AGG | 0.431013 | 1.1:-51830 | None:intergenic |
| AATCTGCAGGAAATATCAAA+TGG | 0.433212 | 1.1:+52714 | MS.gene27118:CDS |
| TAGAATTGTGCATAGGTAGC+AGG | 0.433727 | 1.1:-51785 | None:intergenic |
| CAGAAGCTTGCGAGAAAGAA+AGG | 0.445491 | 1.1:+52777 | MS.gene27118:CDS |
| ATTGGTCAACCCAGCCACTT+GGG | 0.446890 | 1.1:-51162 | None:intergenic |
| TGTGGGCGAAACTCCCGCTC+AGG | 0.448315 | 1.1:-51644 | None:intergenic |
| AATCCTCCATTCCCTCATAA+TGG | 0.450708 | 1.1:+51818 | MS.gene27118:CDS |
| GATGTTAGAAAGTGAGCAAA+AGG | 0.453692 | 1.1:-51473 | None:intergenic |
| CGTGGAGATTTCTGATGTAA+TGG | 0.456383 | 1.1:+52003 | MS.gene27118:CDS |
| AGCTGTGTTTCATGAGCATA+TGG | 0.456787 | 1.1:-51344 | None:intergenic |
| GTTGTTAAGTGAGCCAACTC+TGG | 0.457024 | 1.1:-51431 | None:intergenic |
| ATCTGCAGGAAATATCAAAT+GGG | 0.459223 | 1.1:+52715 | MS.gene27118:CDS |
| AATATCAGAGGACTGGGTCT+GGG | 0.462841 | 1.1:+51699 | MS.gene27118:CDS |
| GTCAACCTCTTTCCCTGAGC+GGG | 0.463781 | 1.1:+51631 | MS.gene27118:CDS |
| TCTTGCTTAGGACTTCTAGA+AGG | 0.469074 | 1.1:-51908 | None:intergenic |
| ATCGTATTTGAAGGACCGCC+AGG | 0.474912 | 1.1:-51308 | None:intergenic |
| CGATTAGACGCGAGTCCAGT+TGG | 0.483659 | 1.1:+52154 | MS.gene27118:CDS |
| AATGGAAAATATCAGAGGAC+TGG | 0.485419 | 1.1:+51692 | MS.gene27118:CDS |
| GGATCAGCCAGTCAACCAAA+TGG | 0.486945 | 1.1:+51137 | MS.gene27118:CDS |
| CATTGATTTGCCAGAGGTCA+AGG | 0.488083 | 1.1:-52047 | None:intergenic |
| GAGAGGAGCAGTAGATGGTT+CGG | 0.488881 | 1.1:-51399 | None:intergenic |
| GTCGCATACATCGTATTTGA+AGG | 0.489409 | 1.1:-51317 | None:intergenic |
| GATTGGTCAACCCAGCCACT+TGG | 0.491046 | 1.1:-51163 | None:intergenic |
| TCATTATCTGCAAACTCACC+TGG | 0.493733 | 1.1:+51290 | MS.gene27118:CDS |
| GGAGTGAGAGGAGCAGTAGA+TGG | 0.494811 | 1.1:-51404 | None:intergenic |
| AAAAGGTACATCTGGGGAAG+AGG | 0.502005 | 1.1:-51456 | None:intergenic |
| GTAGTGAAATTTGAGAAGAC+TGG | 0.504573 | 1.1:-51377 | None:intergenic |
| GGATATTGTAGCAACAGCTC+TGG | 0.504750 | 1.1:+52622 | MS.gene27118:CDS |
| TCTTGTTTCAGTTCACAGAA+AGG | 0.507174 | 1.1:+51071 | MS.gene27118:CDS |
| CACTGAAACCAAAGGATGCC+CGG | 0.508288 | 1.1:-51952 | None:intergenic |
| TGATGTTACTATGGCATCAC+AGG | 0.509412 | 1.1:+51745 | MS.gene27118:CDS |
| GACCTCTGGCAAATCAATGA+TGG | 0.511617 | 1.1:+52051 | MS.gene27118:CDS |
| GCCTTATATCTCCAATATCA+AGG | 0.518593 | 1.1:+51591 | MS.gene27118:CDS |
| TTGTTAAGTGAGCCAACTCT+GGG | 0.521849 | 1.1:-51430 | None:intergenic |
| AATCAAATTCCTGTATGTGA+TGG | 0.526258 | 1.1:+52190 | MS.gene27118:CDS |
| GCCTGATAATCATACTCTCA+TGG | 0.526761 | 1.1:+52654 | MS.gene27118:CDS |
| AGCTATGCCTGTGACTTGAT+TGG | 0.533069 | 1.1:-51180 | None:intergenic |
| CCTTCATATCCATCACATAC+AGG | 0.533645 | 1.1:-52199 | None:intergenic |
| ATGGAAAATATCAGAGGACT+GGG | 0.534187 | 1.1:+51693 | MS.gene27118:CDS |
| GATCAGCCAGTCAACCAAAT+GGG | 0.535549 | 1.1:+51138 | MS.gene27118:CDS |
| TATTGGAGATATAAGGCTAC+TGG | 0.535561 | 1.1:-51585 | None:intergenic |
| AAACTCCCGCTCAGGGAAAG+AGG | 0.535842 | 1.1:-51636 | None:intergenic |
| AGAAATCTCCACGTATTGAC+TGG | 0.536110 | 1.1:-51993 | None:intergenic |
| GTTTCAGTTCACAGAAAGGT+GGG | 0.537711 | 1.1:+51075 | MS.gene27118:CDS |
| CTGCCACCATTATGAGGGAA+TGG | 0.538108 | 1.1:-51824 | None:intergenic |
| GACTCGGATGCTCAATCTAC+GGG | 0.540156 | 1.1:+51863 | MS.gene27118:CDS |
| AGACTCGGATGCTCAATCTA+CGG | 0.545021 | 1.1:+51862 | MS.gene27118:CDS |
| GAAGGTGGAGCTAAGAGAGA+AGG | 0.552066 | 1.1:-51203 | None:intergenic |
| CTTGGTGACTGTGCAGTTGA+AGG | 0.553984 | 1.1:-51257 | None:intergenic |
| GTAAAGGATGCTGGTGAAGA+AGG | 0.554485 | 1.1:-51221 | None:intergenic |
| GCGGGAGTTTCGCCCACAGT+GGG | 0.556115 | 1.1:+51649 | MS.gene27118:CDS |
| TCTCCAATATCAAGGAACTC+TGG | 0.557402 | 1.1:+51599 | MS.gene27118:CDS |
| GCCAGAGGTCAAGGGCATCA+TGG | 0.557610 | 1.1:-52038 | None:intergenic |
| CATGTCAGATCATAAATCAC+CGG | 0.558274 | 1.1:+52600 | MS.gene27118:intron |
| AGTGAGCAAAAGGTACATCT+GGG | 0.558305 | 1.1:-51463 | None:intergenic |
| TTATCAGGAATACGAGATGC+AGG | 0.558545 | 1.1:-51110 | None:intergenic |
| CAAATGGGCCCCAAGTGGCT+GGG | 0.560270 | 1.1:+51153 | MS.gene27118:CDS |
| AAAGGTACATCTGGGGAAGA+GGG | 0.565920 | 1.1:-51455 | None:intergenic |
| CTGGACTCGCGTCTAATCGA+AGG | 0.566055 | 1.1:-52150 | None:intergenic |
| TGCAGAGGTTGACTATAGAA+GGG | 0.566479 | 1.1:+52753 | MS.gene27118:CDS |
| CCTGTATGTGATGGATATGA+AGG | 0.571427 | 1.1:+52199 | MS.gene27118:CDS |
| GTGAAATTTGAGAAGACTGG+AGG | 0.572005 | 1.1:-51374 | None:intergenic |
| TCAAATACGATGTATGCGAC+TGG | 0.572329 | 1.1:+51320 | MS.gene27118:CDS |
| ACTACATATTCGCTCTACCC+TGG | 0.573659 | 1.1:+51554 | MS.gene27118:CDS |
| TCAGAGGACTGGGTCTGGGA+GGG | 0.576834 | 1.1:+51703 | MS.gene27118:CDS |
| TGTTTCAGTTCACAGAAAGG+TGG | 0.578020 | 1.1:+51074 | MS.gene27118:CDS |
| ATTCAAAGCTCATGAGACTC+AGG | 0.580037 | 1.1:+52105 | MS.gene27118:CDS |
| GCAGAATGTGTAAAGGATGC+TGG | 0.584993 | 1.1:-51230 | None:intergenic |
| GTGGGCGAAACTCCCGCTCA+GGG | 0.587338 | 1.1:-51643 | None:intergenic |
| GGGTTGACCAATCAAGTCAC+AGG | 0.587853 | 1.1:+51173 | MS.gene27118:CDS |
| ATCAGAGGACTGGGTCTGGG+AGG | 0.588077 | 1.1:+51702 | MS.gene27118:CDS |
| TAGAAGTCCTAAGCAAGATG+TGG | 0.589021 | 1.1:+51913 | MS.gene27118:CDS |
| TTGGTCAACCCAGCCACTTG+GGG | 0.591564 | 1.1:-51161 | None:intergenic |
| ATATGCTCATGAAACACAGC+TGG | 0.591977 | 1.1:+51346 | MS.gene27118:CDS |
| ATTAAGTGTTTCAAAAGACT+CGG | 0.593462 | 1.1:+51847 | MS.gene27118:CDS |
| TGGGATCATCCAGAATCTGC+AGG | 0.595345 | 1.1:+52701 | MS.gene27118:CDS |
| TCTATAGTCAACCTCTGCAT+CGG | 0.596969 | 1.1:-52749 | None:intergenic |
| CTCATCTGCACTGAAACCAA+AGG | 0.597006 | 1.1:-51960 | None:intergenic |
| TTCCATCATTGATTTGCCAG+AGG | 0.599588 | 1.1:-52053 | None:intergenic |
| GTGACTGTGCAGTTGAAGGA+AGG | 0.600512 | 1.1:-51253 | None:intergenic |
| AGGAAGGGCAGAATGTGTAA+AGG | 0.600967 | 1.1:-51237 | None:intergenic |
| CTGAAAATGGAAAATATCAG+AGG | 0.602081 | 1.1:+51687 | MS.gene27118:CDS |
| AGAATTGTGCATAGGTAGCA+GGG | 0.602738 | 1.1:-51784 | None:intergenic |
| GAGCTGTTGCTACAATATCC+CGG | 0.605194 | 1.1:-52619 | None:intergenic |
| GTTATCATGCTCCGATGCAG+AGG | 0.606978 | 1.1:+52738 | MS.gene27118:CDS |
| GGAGATATAAGGCTACTGGC+AGG | 0.608168 | 1.1:-51581 | None:intergenic |
| CAAAGCTCATGAGACTCAGG+TGG | 0.609565 | 1.1:+52108 | MS.gene27118:CDS |
| AGAAGCTTGCGAGAAAGAAA+GGG | 0.612565 | 1.1:+52778 | MS.gene27118:CDS |
| GGAAGAAATAGAAGCTTACC+GGG | 0.612807 | 1.1:+51934 | MS.gene27118:CDS |
| TTAATCTGCCACCATTATGA+GGG | 0.614309 | 1.1:-51829 | None:intergenic |
| ATTGATTTGCCAGAGGTCAA+GGG | 0.615854 | 1.1:-52046 | None:intergenic |
| GGCTACTGGCAGGACTTCCA+GGG | 0.622814 | 1.1:-51571 | None:intergenic |
| GTGGAAATGGACATCAGAGT+AGG | 0.623948 | 1.1:+51885 | MS.gene27118:CDS |
| GTCCAAATAGAATTGTGCAT+AGG | 0.628022 | 1.1:-51792 | None:intergenic |
| AGCGGGAGTTTCGCCCACAG+TGG | 0.628097 | 1.1:+51648 | MS.gene27118:CDS |
| CCACCATTATGAGGGAATGG+AGG | 0.638910 | 1.1:-51821 | None:intergenic |
| CCTCCATTCCCTCATAATGG+TGG | 0.644991 | 1.1:+51821 | MS.gene27118:CDS |
| AAGGATGCTGGTGAAGAAGG+TGG | 0.646683 | 1.1:-51218 | None:intergenic |
| AAAGCTCATGAGACTCAGGT+GGG | 0.647953 | 1.1:+52109 | MS.gene27118:CDS |
| ATGTCAGATCATAAATCACC+GGG | 0.648766 | 1.1:+52601 | MS.gene27118:intron |
| GTTAAGTGAGCCAACTCTGG+GGG | 0.650031 | 1.1:-51428 | None:intergenic |
| ACAGTGATGAATCCCACTGT+GGG | 0.651266 | 1.1:-51661 | None:intergenic |
| TCGGATGCTCAATCTACGGG+TGG | 0.656294 | 1.1:+51866 | MS.gene27118:CDS |
| TGTCAACCTCTTTCCCTGAG+CGG | 0.657293 | 1.1:+51630 | MS.gene27118:CDS |
| GCAGAGGTTGACTATAGAAG+GGG | 0.658601 | 1.1:+52754 | MS.gene27118:CDS |
| TATAACCACCAGTCAATACG+TGG | 0.662605 | 1.1:+51985 | MS.gene27118:CDS |
| TCTGCAGGAAATATCAAATG+GGG | 0.670683 | 1.1:+52716 | MS.gene27118:CDS |
| TCAACCAAATGGGCCCCAAG+TGG | 0.677451 | 1.1:+51148 | MS.gene27118:CDS |
| AATCTCCACGTATTGACTGG+TGG | 0.682416 | 1.1:-51990 | None:intergenic |
| TGACTGTGCAGTTGAAGGAA+GGG | 0.689565 | 1.1:-51252 | None:intergenic |
| TACAGTGATGAATCCCACTG+TGG | 0.717481 | 1.1:-51662 | None:intergenic |
| TGTTAAGTGAGCCAACTCTG+GGG | 0.718392 | 1.1:-51429 | None:intergenic |
| GTGAGCAAAAGGTACATCTG+GGG | 0.723428 | 1.1:-51462 | None:intergenic |
| TTATCTGCAAACTCACCTGG+CGG | 0.723487 | 1.1:+51293 | MS.gene27118:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATTTAAGGATAAAAT+TGG | - | chr1.1:52569-52588 | None:intergenic | 15.0% |
| !! | GAAGATATATTCTCAAAAAT+GGG | + | chr1.1:52682-52701 | MS.gene27118:CDS | 20.0% |
| !! | TGAAGATATATTCTCAAAAA+TGG | + | chr1.1:52681-52700 | MS.gene27118:CDS | 20.0% |
| !!! | TATGTTGTAGTTACTTTTAA+TGG | + | chr1.1:52411-52430 | MS.gene27118:intron | 20.0% |
| ! | ATTAAGTGTTTCAAAAGACT+CGG | + | chr1.1:51847-51866 | MS.gene27118:CDS | 25.0% |
| ! | GATAATGACAAAAAACAACT+TGG | - | chr1.1:51278-51297 | None:intergenic | 25.0% |
| ! | GCAAGAAAGAAACATATTTA+AGG | - | chr1.1:52579-52598 | None:intergenic | 25.0% |
| ! | TATTACATCTTGAGAAATTG+TGG | + | chr1.1:52257-52276 | MS.gene27118:intron | 25.0% |
| ! | TTGAATTCTTTCATCAATGA+AGG | - | chr1.1:52091-52110 | None:intergenic | 25.0% |
| !!! | TACTCTTATTTTGAAAGAGA+GGG | - | chr1.1:52471-52490 | None:intergenic | 25.0% |
| AAAGTAACTACAACATACCA+AGG | - | chr1.1:52408-52427 | None:intergenic | 30.0% | |
| AATCAAATTCCTGTATGTGA+TGG | + | chr1.1:52190-52209 | MS.gene27118:CDS | 30.0% | |
| AATCTGCAGGAAATATCAAA+TGG | + | chr1.1:52714-52733 | MS.gene27118:CDS | 30.0% | |
| ATCTGCAGGAAATATCAAAT+GGG | + | chr1.1:52715-52734 | MS.gene27118:CDS | 30.0% | |
| CTGAAAATGGAAAATATCAG+AGG | + | chr1.1:51687-51706 | MS.gene27118:CDS | 30.0% | |
| TACCTATGCACAATTCTATT+TGG | + | chr1.1:51790-51809 | MS.gene27118:CDS | 30.0% | |
| TCCTTGATATTGGAGATATA+AGG | - | chr1.1:51595-51614 | None:intergenic | 30.0% | |
| TCTCGTATTCCTGATAATAA+TGG | + | chr1.1:51116-51135 | MS.gene27118:CDS | 30.0% | |
| ! | ATGAAGGTATGCTGTAAAAA+CGG | + | chr1.1:52215-52234 | MS.gene27118:intron | 30.0% |
| ! | CTCTGATATTTTCCATTTTC+AGG | - | chr1.1:51689-51708 | None:intergenic | 30.0% |
| !!! | CTACTCTTATTTTGAAAGAG+AGG | - | chr1.1:52472-52491 | None:intergenic | 30.0% |
| AAATCTCAAAAATGGTGGCA+AGG | + | chr1.1:51502-51521 | MS.gene27118:CDS | 35.0% | |
| AATCTCAAAAATGGTGGCAA+GGG | + | chr1.1:51503-51522 | MS.gene27118:CDS | 35.0% | |
| AATGGAAAATATCAGAGGAC+TGG | + | chr1.1:51692-51711 | MS.gene27118:CDS | 35.0% | |
| ATGGAAAATATCAGAGGACT+GGG | + | chr1.1:51693-51712 | MS.gene27118:CDS | 35.0% | |
| ATGTCAGATCATAAATCACC+GGG | + | chr1.1:52601-52620 | MS.gene27118:intron | 35.0% | |
| ATTTCTTCCACATCTTGCTT+AGG | - | chr1.1:51923-51942 | None:intergenic | 35.0% | |
| CATGTCAGATCATAAATCAC+CGG | + | chr1.1:52600-52619 | MS.gene27118:intron | 35.0% | |
| CGACACTAATGATGTTACTA+TGG | + | chr1.1:51736-51755 | MS.gene27118:CDS | 35.0% | |
| GATGTTAGAAAGTGAGCAAA+AGG | - | chr1.1:51476-51495 | None:intergenic | 35.0% | |
| GCCTTATATCTCCAATATCA+AGG | + | chr1.1:51591-51610 | MS.gene27118:CDS | 35.0% | |
| GTAGTGAAATTTGAGAAGAC+TGG | - | chr1.1:51380-51399 | None:intergenic | 35.0% | |
| GTCCAAATAGAATTGTGCAT+AGG | - | chr1.1:51795-51814 | None:intergenic | 35.0% | |
| TATTGGAGATATAAGGCTAC+TGG | - | chr1.1:51588-51607 | None:intergenic | 35.0% | |
| TCAGCAAATCTCAAAAATGG+TGG | + | chr1.1:51497-51516 | MS.gene27118:CDS | 35.0% | |
| TCATCACTGTATCCTGAAAA+TGG | + | chr1.1:51674-51693 | MS.gene27118:CDS | 35.0% | |
| TCCTCAGCAAATCTCAAAAA+TGG | + | chr1.1:51494-51513 | MS.gene27118:CDS | 35.0% | |
| TCTGCAGGAAATATCAAATG+GGG | + | chr1.1:52716-52735 | MS.gene27118:CDS | 35.0% | |
| TGGAAGAAATAGAAGCTTAC+CGG | + | chr1.1:51933-51952 | MS.gene27118:CDS | 35.0% | |
| TTAATCTGCCACCATTATGA+GGG | - | chr1.1:51832-51851 | None:intergenic | 35.0% | |
| TTGATATTTCCTGCAGATTC+TGG | - | chr1.1:52713-52732 | None:intergenic | 35.0% | |
| ! | TCCATGAGAGTATGATTATC+AGG | - | chr1.1:52658-52677 | None:intergenic | 35.0% |
| ! | TCTTGTTTCAGTTCACAGAA+AGG | + | chr1.1:51071-51090 | MS.gene27118:CDS | 35.0% |
| ! | TTTGAAGTTGCTCTTCTCTA+TGG | - | chr1.1:52332-52351 | None:intergenic | 35.0% |
| !!! | ACCATTTTTGAGATTTGCTG+AGG | - | chr1.1:51498-51517 | None:intergenic | 35.0% |
| AAAAAGATGGGGAGGTTGTT+TGG | + | chr1.1:51040-51059 | MS.gene27118:CDS | 40.0% | |
| AAAAGATGGGGAGGTTGTTT+GGG | + | chr1.1:51041-51060 | MS.gene27118:CDS | 40.0% | |
| AATCCTCCATTCCCTCATAA+TGG | + | chr1.1:51818-51837 | MS.gene27118:CDS | 40.0% | |
| AGAAGCTTGCGAGAAAGAAA+GGG | + | chr1.1:52778-52797 | MS.gene27118:CDS | 40.0% | |
| AGAATTGTGCATAGGTAGCA+GGG | - | chr1.1:51787-51806 | None:intergenic | 40.0% | |
| AGCTGTGTTTCATGAGCATA+TGG | - | chr1.1:51347-51366 | None:intergenic | 40.0% | |
| ATATGCTCATGAAACACAGC+TGG | + | chr1.1:51346-51365 | MS.gene27118:CDS | 40.0% | |
| ATGCAGAGGTTGACTATAGA+AGG | + | chr1.1:52752-52771 | MS.gene27118:CDS | 40.0% | |
| ATTCAAAGCTCATGAGACTC+AGG | + | chr1.1:52105-52124 | MS.gene27118:CDS | 40.0% | |
| CATCTCAATAACTAGAGCCT+TGG | + | chr1.1:52388-52407 | MS.gene27118:intron | 40.0% | |
| CCTTCATATCCATCACATAC+AGG | - | chr1.1:52202-52221 | None:intergenic | 40.0% | |
| CGTGGAGATTTCTGATGTAA+TGG | + | chr1.1:52003-52022 | MS.gene27118:CDS | 40.0% | |
| CTGGCTGATCCATTATTATC+AGG | - | chr1.1:51128-51147 | None:intergenic | 40.0% | |
| CTTAATCTGCCACCATTATG+AGG | - | chr1.1:51833-51852 | None:intergenic | 40.0% | |
| GCCTGATAATCATACTCTCA+TGG | + | chr1.1:52654-52673 | MS.gene27118:CDS | 40.0% | |
| GGAAGAAATAGAAGCTTACC+GGG | + | chr1.1:51934-51953 | MS.gene27118:CDS | 40.0% | |
| GTCGCATACATCGTATTTGA+AGG | - | chr1.1:51320-51339 | None:intergenic | 40.0% | |
| GTGAAATTTGAGAAGACTGG+AGG | - | chr1.1:51377-51396 | None:intergenic | 40.0% | |
| GTTTCAGTTCACAGAAAGGT+GGG | + | chr1.1:51075-51094 | MS.gene27118:CDS | 40.0% | |
| TAGAAGTCCTAAGCAAGATG+TGG | + | chr1.1:51913-51932 | MS.gene27118:CDS | 40.0% | |
| TAGAATTGTGCATAGGTAGC+AGG | - | chr1.1:51788-51807 | None:intergenic | 40.0% | |
| TATAACCACCAGTCAATACG+TGG | + | chr1.1:51985-52004 | MS.gene27118:CDS | 40.0% | |
| TCAAATACGATGTATGCGAC+TGG | + | chr1.1:51320-51339 | MS.gene27118:CDS | 40.0% | |
| TCACCAGAGTTCCTTGATAT+TGG | - | chr1.1:51605-51624 | None:intergenic | 40.0% | |
| TCATTATCTGCAAACTCACC+TGG | + | chr1.1:51290-51309 | MS.gene27118:CDS | 40.0% | |
| TCTATAGTCAACCTCTGCAT+CGG | - | chr1.1:52752-52771 | None:intergenic | 40.0% | |
| TCTCCAATATCAAGGAACTC+TGG | + | chr1.1:51599-51618 | MS.gene27118:CDS | 40.0% | |
| TCTTGCTTAGGACTTCTAGA+AGG | - | chr1.1:51911-51930 | None:intergenic | 40.0% | |
| TGATGTTACTATGGCATCAC+AGG | + | chr1.1:51745-51764 | MS.gene27118:CDS | 40.0% | |
| TGCAGAGGTTGACTATAGAA+GGG | + | chr1.1:52753-52772 | MS.gene27118:CDS | 40.0% | |
| TGTTTCAGTTCACAGAAAGG+TGG | + | chr1.1:51074-51093 | MS.gene27118:CDS | 40.0% | |
| TTATCAGGAATACGAGATGC+AGG | - | chr1.1:51113-51132 | None:intergenic | 40.0% | |
| TTGTTAAGTGAGCCAACTCT+GGG | - | chr1.1:51433-51452 | None:intergenic | 40.0% | |
| ! | AAGTGAGCAAAAGGTACATC+TGG | - | chr1.1:51467-51486 | None:intergenic | 40.0% |
| ! | AGAAATCTCCACGTATTGAC+TGG | - | chr1.1:51996-52015 | None:intergenic | 40.0% |
| ! | AGTGAGCAAAAGGTACATCT+GGG | - | chr1.1:51466-51485 | None:intergenic | 40.0% |
| ! | TATGAGGGAATGGAGGATTT+TGG | - | chr1.1:51817-51836 | None:intergenic | 40.0% |
| !! | ATTGATTTGCCAGAGGTCAA+GGG | - | chr1.1:52049-52068 | None:intergenic | 40.0% |
| !! | CCTGTATGTGATGGATATGA+AGG | + | chr1.1:52199-52218 | MS.gene27118:CDS | 40.0% |
| !! | TTCCATCATTGATTTGCCAG+AGG | - | chr1.1:52056-52075 | None:intergenic | 40.0% |
| AAAGCTCATGAGACTCAGGT+GGG | + | chr1.1:52109-52128 | MS.gene27118:CDS | 45.0% | |
| AAATATCAGAGGACTGGGTC+TGG | + | chr1.1:51698-51717 | MS.gene27118:CDS | 45.0% | |
| AATATCAGAGGACTGGGTCT+GGG | + | chr1.1:51699-51718 | MS.gene27118:CDS | 45.0% | |
| ACAGTGATGAATCCCACTGT+GGG | - | chr1.1:51664-51683 | None:intergenic | 45.0% | |
| ACTACATATTCGCTCTACCC+TGG | + | chr1.1:51554-51573 | MS.gene27118:CDS | 45.0% | |
| AGACTCGGATGCTCAATCTA+CGG | + | chr1.1:51862-51881 | MS.gene27118:CDS | 45.0% | |
| AGCTATGCCTGTGACTTGAT+TGG | - | chr1.1:51183-51202 | None:intergenic | 45.0% | |
| AGGAAGGGCAGAATGTGTAA+AGG | - | chr1.1:51240-51259 | None:intergenic | 45.0% | |
| CAGAAGCTTGCGAGAAAGAA+AGG | + | chr1.1:52777-52796 | MS.gene27118:CDS | 45.0% | |
| CTCATCTGCACTGAAACCAA+AGG | - | chr1.1:51963-51982 | None:intergenic | 45.0% | |
| GACCTCTGGCAAATCAATGA+TGG | + | chr1.1:52051-52070 | MS.gene27118:CDS | 45.0% | |
| GAGCTGTTGCTACAATATCC+CGG | - | chr1.1:52622-52641 | None:intergenic | 45.0% | |
| GATCAGCCAGTCAACCAAAT+GGG | + | chr1.1:51138-51157 | MS.gene27118:CDS | 45.0% | |
| GCAGAATGTGTAAAGGATGC+TGG | - | chr1.1:51233-51252 | None:intergenic | 45.0% | |
| GCAGAGGTTGACTATAGAAG+GGG | + | chr1.1:52754-52773 | MS.gene27118:CDS | 45.0% | |
| GGATATTGTAGCAACAGCTC+TGG | + | chr1.1:52622-52641 | MS.gene27118:CDS | 45.0% | |
| GTAAAGGATGCTGGTGAAGA+AGG | - | chr1.1:51224-51243 | None:intergenic | 45.0% | |
| GTGGAAATGGACATCAGAGT+AGG | + | chr1.1:51885-51904 | MS.gene27118:CDS | 45.0% | |
| GTTGTTAAGTGAGCCAACTC+TGG | - | chr1.1:51434-51453 | None:intergenic | 45.0% | |
| TACAGTGATGAATCCCACTG+TGG | - | chr1.1:51665-51684 | None:intergenic | 45.0% | |
| TGACTGTGCAGTTGAAGGAA+GGG | - | chr1.1:51255-51274 | None:intergenic | 45.0% | |
| TGTTAAGTGAGCCAACTCTG+GGG | - | chr1.1:51432-51451 | None:intergenic | 45.0% | |
| TTATCTGCAAACTCACCTGG+CGG | + | chr1.1:51293-51312 | MS.gene27118:CDS | 45.0% | |
| TTCTTTGCTTGCTTGCCAAC+TGG | - | chr1.1:52172-52191 | None:intergenic | 45.0% | |
| ! | AAAAGGTACATCTGGGGAAG+AGG | - | chr1.1:51459-51478 | None:intergenic | 45.0% |
| ! | AAAGGTACATCTGGGGAAGA+GGG | - | chr1.1:51458-51477 | None:intergenic | 45.0% |
| ! | GTGAGCAAAAGGTACATCTG+GGG | - | chr1.1:51465-51484 | None:intergenic | 45.0% |
| !! | AATCTCCACGTATTGACTGG+TGG | - | chr1.1:51993-52012 | None:intergenic | 45.0% |
| !! | CATTGATTTGCCAGAGGTCA+AGG | - | chr1.1:52050-52069 | None:intergenic | 45.0% |
| !!! | TTATTTTATAAAAGATAAAA+TGG | - | chr1.1:52532-52551 | None:intergenic | 5.0% |
| AAGGATGCTGGTGAAGAAGG+TGG | - | chr1.1:51221-51240 | None:intergenic | 50.0% | |
| ATCGTATTTGAAGGACCGCC+AGG | - | chr1.1:51311-51330 | None:intergenic | 50.0% | |
| ATTGGTCAACCCAGCCACTT+GGG | - | chr1.1:51165-51184 | None:intergenic | 50.0% | |
| CAAAGCTCATGAGACTCAGG+TGG | + | chr1.1:52108-52127 | MS.gene27118:CDS | 50.0% | |
| CACTGAAACCAAAGGATGCC+CGG | - | chr1.1:51955-51974 | None:intergenic | 50.0% | |
| CCACCATTATGAGGGAATGG+AGG | - | chr1.1:51824-51843 | None:intergenic | 50.0% | |
| CCTCCATTCCCTCATAATGG+TGG | + | chr1.1:51821-51840 | MS.gene27118:CDS | 50.0% | |
| CTGCCACCATTATGAGGGAA+TGG | - | chr1.1:51827-51846 | None:intergenic | 50.0% | |
| GAAGGTGGAGCTAAGAGAGA+AGG | - | chr1.1:51206-51225 | None:intergenic | 50.0% | |
| GACTCGGATGCTCAATCTAC+GGG | + | chr1.1:51863-51882 | MS.gene27118:CDS | 50.0% | |
| GAGAGGAGCAGTAGATGGTT+CGG | - | chr1.1:51402-51421 | None:intergenic | 50.0% | |
| GCTCAATCTACGGGTGGAAA+TGG | + | chr1.1:51872-51891 | MS.gene27118:CDS | 50.0% | |
| GGAGATATAAGGCTACTGGC+AGG | - | chr1.1:51584-51603 | None:intergenic | 50.0% | |
| GGATCAGCCAGTCAACCAAA+TGG | + | chr1.1:51137-51156 | MS.gene27118:CDS | 50.0% | |
| GGGTTGACCAATCAAGTCAC+AGG | + | chr1.1:51173-51192 | MS.gene27118:CDS | 50.0% | |
| GTGACTGTGCAGTTGAAGGA+AGG | - | chr1.1:51256-51275 | None:intergenic | 50.0% | |
| GTTAAGTGAGCCAACTCTGG+GGG | - | chr1.1:51431-51450 | None:intergenic | 50.0% | |
| GTTATCATGCTCCGATGCAG+AGG | + | chr1.1:52738-52757 | MS.gene27118:CDS | 50.0% | |
| TGGGATCATCCAGAATCTGC+AGG | + | chr1.1:52701-52720 | MS.gene27118:CDS | 50.0% | |
| TGTCAACCTCTTTCCCTGAG+CGG | + | chr1.1:51630-51649 | MS.gene27118:CDS | 50.0% | |
| ! | CTTGGTGACTGTGCAGTTGA+AGG | - | chr1.1:51260-51279 | None:intergenic | 50.0% |
| AAACTCCCGCTCAGGGAAAG+AGG | - | chr1.1:51639-51658 | None:intergenic | 55.0% | |
| ACCATGATGCCCTTGACCTC+TGG | + | chr1.1:52037-52056 | MS.gene27118:CDS | 55.0% | |
| CGATTAGACGCGAGTCCAGT+TGG | + | chr1.1:52154-52173 | MS.gene27118:CDS | 55.0% | |
| CTGGACTCGCGTCTAATCGA+AGG | - | chr1.1:52153-52172 | None:intergenic | 55.0% | |
| GAAGCTTACCGGGCATCCTT+TGG | + | chr1.1:51944-51963 | MS.gene27118:CDS | 55.0% | |
| GGAGTGAGAGGAGCAGTAGA+TGG | - | chr1.1:51407-51426 | None:intergenic | 55.0% | |
| GTCAACCTCTTTCCCTGAGC+GGG | + | chr1.1:51631-51650 | MS.gene27118:CDS | 55.0% | |
| TCAACCAAATGGGCCCCAAG+TGG | + | chr1.1:51148-51167 | MS.gene27118:CDS | 55.0% | |
| TCGGATGCTCAATCTACGGG+TGG | + | chr1.1:51866-51885 | MS.gene27118:CDS | 55.0% | |
| TTGGGGCCCATTTGGTTGAC+TGG | - | chr1.1:51147-51166 | None:intergenic | 55.0% | |
| TTGGTCAACCCAGCCACTTG+GGG | - | chr1.1:51164-51183 | None:intergenic | 55.0% | |
| ! | GATTGGTCAACCCAGCCACT+TGG | - | chr1.1:51166-51185 | None:intergenic | 55.0% |
| ACTGGGTCTGGGAGGGTTTC+TGG | + | chr1.1:51710-51729 | MS.gene27118:CDS | 60.0% | |
| AGGCTACTGGCAGGACTTCC+AGG | - | chr1.1:51575-51594 | None:intergenic | 60.0% | |
| ATCAGAGGACTGGGTCTGGG+AGG | + | chr1.1:51702-51721 | MS.gene27118:CDS | 60.0% | |
| CAAATGGGCCCCAAGTGGCT+GGG | + | chr1.1:51153-51172 | MS.gene27118:CDS | 60.0% | |
| CTGGGTCTGGGAGGGTTTCT+GGG | + | chr1.1:51711-51730 | MS.gene27118:CDS | 60.0% | |
| GGCTACTGGCAGGACTTCCA+GGG | - | chr1.1:51574-51593 | None:intergenic | 60.0% | |
| TCAGAGGACTGGGTCTGGGA+GGG | + | chr1.1:51703-51722 | MS.gene27118:CDS | 60.0% | |
| TCTCACTCCTCCCCCAGAGT+TGG | + | chr1.1:51418-51437 | MS.gene27118:CDS | 60.0% | |
| ! | AACTCTGGGGGAGGAGTGAG+AGG | - | chr1.1:51419-51438 | None:intergenic | 60.0% |
| ! | AAGTGAGCCAACTCTGGGGG+AGG | - | chr1.1:51428-51447 | None:intergenic | 60.0% |
| !! | GCCAGAGGTCAAGGGCATCA+TGG | - | chr1.1:52041-52060 | None:intergenic | 60.0% |
| AGCGGGAGTTTCGCCCACAG+TGG | + | chr1.1:51648-51667 | MS.gene27118:CDS | 65.0% | |
| CCAAATGGGCCCCAAGTGGC+TGG | + | chr1.1:51152-51171 | MS.gene27118:CDS | 65.0% | |
| CCAGCCACTTGGGGCCCATT+TGG | - | chr1.1:51155-51174 | None:intergenic | 65.0% | |
| GCGGGAGTTTCGCCCACAGT+GGG | + | chr1.1:51649-51668 | MS.gene27118:CDS | 65.0% | |
| GTGGGCGAAACTCCCGCTCA+GGG | - | chr1.1:51646-51665 | None:intergenic | 65.0% | |
| TGTGGGCGAAACTCCCGCTC+AGG | - | chr1.1:51647-51666 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 51038 | 52807 | 51038 | ID=MS.gene27118 |
| chr1.1 | mRNA | 51038 | 52807 | 51038 | ID=MS.gene27118.t1;Parent=MS.gene27118 |
| chr1.1 | exon | 51038 | 52220 | 51038 | ID=MS.gene27118.t1.exon1;Parent=MS.gene27118.t1 |
| chr1.1 | CDS | 51038 | 52220 | 51038 | ID=cds.MS.gene27118.t1;Parent=MS.gene27118.t1 |
| chr1.1 | exon | 52608 | 52807 | 52608 | ID=MS.gene27118.t1.exon2;Parent=MS.gene27118.t1 |
| chr1.1 | CDS | 52608 | 52807 | 52608 | ID=cds.MS.gene27118.t1;Parent=MS.gene27118.t1 |
| Gene Sequence |
| Protein sequence |
