Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05537.t1 | RHN52891.1 | 94.8 | 633 | 32 | 1 | 1 | 632 | 57 | 689 | 0.00E+00 | 1122.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05537.t1 | A0A072UBV7 | 94.8 | 633 | 32 | 1 | 1 | 632 | 1 | 633 | 0.0e+00 | 1122.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052454 | MS.gene05537 | 0.858092 | 1.04E-62 | -1.69E-46 |
| MS.gene05537 | MS.gene24077 | 0.815733 | 7.95E-52 | -1.69E-46 |
| MS.gene05537 | MS.gene27118 | 0.818345 | 2.06E-52 | -1.69E-46 |
| MS.gene05537 | MS.gene61400 | 0.91962 | 3.58E-87 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05537.t1 | MTR_6g086635 | 95.103 | 633 | 30 | 1 | 1 | 632 | 1 | 633 | 0.0 | 1223 |
| MS.gene05537.t1 | MTR_8g103540 | 56.355 | 653 | 250 | 11 | 1 | 631 | 1 | 640 | 0.0 | 650 |
| MS.gene05537.t1 | MTR_2g102030 | 47.222 | 180 | 95 | 0 | 1 | 180 | 1 | 180 | 2.90e-51 | 183 |
| MS.gene05537.t1 | MTR_4g012540 | 54.422 | 147 | 66 | 1 | 28 | 174 | 1 | 146 | 8.95e-45 | 162 |
| MS.gene05537.t1 | MTR_8g074540 | 33.333 | 189 | 116 | 2 | 4 | 182 | 20 | 208 | 2.34e-29 | 121 |
| MS.gene05537.t1 | MTR_6g091690 | 32.418 | 182 | 113 | 2 | 5 | 176 | 1 | 182 | 1.16e-25 | 113 |
| MS.gene05537.t1 | MTR_4g038310 | 32.258 | 186 | 117 | 1 | 1 | 177 | 1 | 186 | 3.79e-24 | 106 |
| MS.gene05537.t1 | MTR_6g038150 | 30.208 | 192 | 124 | 2 | 1 | 182 | 3 | 194 | 6.85e-24 | 106 |
| MS.gene05537.t1 | MTR_1g110690 | 29.189 | 185 | 121 | 2 | 1 | 175 | 3 | 187 | 7.97e-23 | 100 |
| MS.gene05537.t1 | MTR_2g090230 | 32.500 | 160 | 99 | 2 | 14 | 164 | 3 | 162 | 6.30e-20 | 94.4 |
| MS.gene05537.t1 | MTR_7g407010 | 28.000 | 175 | 117 | 2 | 4 | 169 | 2 | 176 | 2.38e-18 | 88.6 |
| MS.gene05537.t1 | MTR_8g074540 | 30.827 | 133 | 83 | 1 | 59 | 182 | 2 | 134 | 1.89e-17 | 84.7 |
| MS.gene05537.t1 | MTR_1g111210 | 28.729 | 181 | 114 | 4 | 2 | 169 | 5 | 183 | 2.46e-15 | 78.6 |
| MS.gene05537.t1 | MTR_6g091690 | 29.310 | 116 | 73 | 1 | 70 | 176 | 2 | 117 | 2.42e-13 | 73.9 |
| MS.gene05537.t1 | MTR_2g090230 | 32.759 | 116 | 69 | 2 | 58 | 164 | 7 | 122 | 9.11e-13 | 71.6 |
| MS.gene05537.t1 | MTR_4g081350 | 25.143 | 175 | 119 | 2 | 12 | 176 | 9 | 181 | 1.18e-12 | 70.5 |
| MS.gene05537.t1 | MTR_4g081350 | 25.143 | 175 | 119 | 2 | 12 | 176 | 9 | 181 | 1.20e-12 | 70.5 |
| MS.gene05537.t1 | MTR_7g098540 | 25.904 | 166 | 118 | 1 | 12 | 172 | 19 | 184 | 1.09e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05537.t1 | AT4G32350 | 59.459 | 185 | 75 | 0 | 1 | 185 | 1 | 185 | 3.13e-71 | 244 |
| MS.gene05537.t1 | AT4G32350 | 33.333 | 306 | 160 | 9 | 330 | 631 | 466 | 731 | 5.84e-30 | 126 |
| MS.gene05537.t1 | AT4G32350 | 59.459 | 185 | 75 | 0 | 1 | 185 | 1 | 185 | 3.13e-71 | 244 |
| MS.gene05537.t1 | AT4G32350 | 33.333 | 306 | 160 | 9 | 330 | 631 | 466 | 731 | 5.84e-30 | 126 |
| MS.gene05537.t1 | AT1G79910 | 54.444 | 180 | 82 | 0 | 1 | 180 | 1 | 180 | 4.37e-62 | 211 |
| MS.gene05537.t1 | AT1G52315 | 42.458 | 179 | 98 | 2 | 10 | 185 | 10 | 186 | 3.25e-37 | 142 |
| MS.gene05537.t1 | AT1G79910 | 52.459 | 122 | 58 | 0 | 59 | 180 | 4 | 125 | 1.01e-35 | 137 |
| MS.gene05537.t1 | AT1G79910 | 52.066 | 121 | 58 | 0 | 60 | 180 | 46 | 166 | 1.49e-34 | 135 |
| MS.gene05537.t1 | AT4G35730 | 34.921 | 189 | 113 | 2 | 4 | 182 | 20 | 208 | 1.00e-30 | 126 |
| MS.gene05537.t1 | AT4G32350 | 53.608 | 97 | 45 | 0 | 89 | 185 | 1 | 97 | 3.80e-30 | 126 |
| MS.gene05537.t1 | AT4G32350 | 33.333 | 306 | 160 | 9 | 330 | 631 | 378 | 643 | 9.81e-30 | 125 |
| MS.gene05537.t1 | AT1G25420 | 32.642 | 193 | 120 | 2 | 1 | 183 | 3 | 195 | 1.06e-27 | 114 |
| MS.gene05537.t1 | AT1G34220 | 32.642 | 193 | 120 | 2 | 1 | 183 | 3 | 195 | 1.19e-26 | 115 |
| MS.gene05537.t1 | AT1G52315 | 39.669 | 121 | 68 | 2 | 68 | 185 | 18 | 136 | 2.01e-22 | 98.6 |
| MS.gene05537.t1 | AT1G25420 | 30.952 | 168 | 107 | 1 | 25 | 183 | 1 | 168 | 5.68e-22 | 97.1 |
| MS.gene05537.t1 | AT1G34220 | 28.700 | 223 | 119 | 3 | 1 | 183 | 3 | 225 | 8.49e-22 | 100 |
| MS.gene05537.t1 | AT2G19710 | 25.275 | 182 | 126 | 2 | 5 | 176 | 4 | 185 | 3.44e-20 | 95.9 |
| MS.gene05537.t1 | AT2G14830 | 32.086 | 187 | 116 | 2 | 1 | 177 | 1 | 186 | 5.22e-19 | 90.1 |
| MS.gene05537.t1 | AT4G29440 | 24.176 | 182 | 128 | 2 | 5 | 176 | 4 | 185 | 5.35e-18 | 89.0 |
| MS.gene05537.t1 | AT1G25420 | 31.496 | 127 | 78 | 1 | 66 | 183 | 1 | 127 | 3.90e-17 | 82.0 |
| MS.gene05537.t1 | AT1G25420 | 31.496 | 127 | 78 | 1 | 66 | 183 | 1 | 127 | 3.90e-17 | 82.0 |
| MS.gene05537.t1 | AT1G13340 | 28.090 | 178 | 118 | 2 | 2 | 169 | 5 | 182 | 3.17e-16 | 81.6 |
| MS.gene05537.t1 | AT4G29440 | 23.490 | 149 | 105 | 1 | 37 | 176 | 9 | 157 | 7.95e-13 | 72.4 |
Find 139 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCTCAGTTCAAAATCTT+TGG | 0.187180 | 6.2:+84847099 | None:intergenic |
| CGACCTTCGGCAAATATTTC+AGG | 0.230293 | 6.2:-84847349 | MS.gene05537:CDS |
| AGCTTCAGCATCTTCTTTAT+TGG | 0.239165 | 6.2:+84845942 | None:intergenic |
| GGATTGGATGTTAATGCTTA+TGG | 0.259710 | 6.2:-84849713 | MS.gene05537:CDS |
| GAGAAAGAATCCCCTGTTCT+TGG | 0.262807 | 6.2:-84846045 | MS.gene05537:CDS |
| AAATCTAAGCTCCCTGAAAA+AGG | 0.293667 | 6.2:-84846687 | MS.gene05537:CDS |
| TGCTTTCTCAGGCACATTGA+TGG | 0.308029 | 6.2:+84845783 | None:intergenic |
| ACCATATCTGGTGTCTTATC+AGG | 0.313507 | 6.2:+84845715 | None:intergenic |
| CTTCTCAGAAAGGTGTCTAT+TGG | 0.334001 | 6.2:-84846581 | MS.gene05537:CDS |
| AGCAGCTAAATCATCATAAT+CGG | 0.338559 | 6.2:+84845558 | None:intergenic |
| CATCGTCAAACAAAATTTGT+AGG | 0.342651 | 6.2:+84845875 | None:intergenic |
| GTAAATCACCATCGTCAAAT+TGG | 0.342652 | 6.2:+84846499 | None:intergenic |
| GACCTTCTTCTTGCTTTCTC+AGG | 0.347634 | 6.2:+84845772 | None:intergenic |
| CTAACGGTGGGCACAAATAT+CGG | 0.349940 | 6.2:-84846761 | MS.gene05537:CDS |
| TTCCTAGCAGTGGCAGTGTC+CGG | 0.359272 | 6.2:+84846438 | None:intergenic |
| TAATTCTGAACATGATTTGC+AGG | 0.366825 | 6.2:-84846103 | MS.gene05537:CDS |
| GGTGCACGAGGGACCATATC+TGG | 0.373763 | 6.2:+84845703 | None:intergenic |
| TCTCTGGCCTCTCCAAGAAC+AGG | 0.393346 | 6.2:+84846033 | None:intergenic |
| ACTTCATCATACCTAGTGAT+TGG | 0.394060 | 6.2:+84846657 | None:intergenic |
| CTGTAGTACGGCTTTACCTT+AGG | 0.394422 | 6.2:+84846297 | None:intergenic |
| GTCGTGGATTCGCCGCGAAA+TGG | 0.396749 | 6.2:-84850268 | MS.gene05537:intron |
| ATCTCAGACTTGCCTTGTAA+TGG | 0.403884 | 6.2:+84846810 | None:intergenic |
| CTCGTCTTGAGTTTAGAATT+AGG | 0.406118 | 6.2:+84846246 | None:intergenic |
| TTCTCAGGCACATTGATGGT+TGG | 0.412764 | 6.2:+84845787 | None:intergenic |
| CTCTGAGAGTTATCAAGATC+AGG | 0.413449 | 6.2:+84846342 | None:intergenic |
| AGAGAAAATCCGATCAGGTT+TGG | 0.415957 | 6.2:-84846127 | MS.gene05537:CDS |
| TCCTAGCAGTGGCAGTGTCC+GGG | 0.416483 | 6.2:+84846439 | None:intergenic |
| TGATGTATTGAAGGATTTGT+TGG | 0.419272 | 6.2:+84846174 | None:intergenic |
| ATAGCTTCCCTGCATTCCTC+AGG | 0.419858 | 6.2:+84847423 | None:intergenic |
| AAGTCGTCATGCACATCAAA+TGG | 0.425691 | 6.2:-84845746 | MS.gene05537:CDS |
| ATCATCATAATCGGGTAAGT+TGG | 0.426333 | 6.2:+84845567 | None:intergenic |
| TCATCATAATCGGGTAAGTT+GGG | 0.434205 | 6.2:+84845568 | None:intergenic |
| TACCAGAGTTACGCGACCTT+CGG | 0.439317 | 6.2:-84847362 | MS.gene05537:CDS |
| ACTATGCTTGACGGCTTACT+CGG | 0.452205 | 6.2:-84850290 | MS.gene05537:CDS |
| ATGGTGATTTACATGATAGA+AGG | 0.454702 | 6.2:-84846488 | MS.gene05537:CDS |
| CCACCATGATTAACAGCAAA+TGG | 0.456593 | 6.2:+84846369 | None:intergenic |
| TGCCGAAGGTCGCGTAACTC+TGG | 0.462005 | 6.2:+84847360 | None:intergenic |
| ATTTGTGCCCACCGTTAGAA+TGG | 0.465435 | 6.2:+84846766 | None:intergenic |
| CTCTCAGAGAAAAGTTCAAA+AGG | 0.466399 | 6.2:-84846328 | MS.gene05537:CDS |
| ACATGCTCGACTGAGTAAAC+AGG | 0.468271 | 6.2:-84846073 | MS.gene05537:CDS |
| GATGTATTGAAGGATTTGTT+GGG | 0.468522 | 6.2:+84846175 | None:intergenic |
| GTGGATGCCCTGAGGAATGC+AGG | 0.469109 | 6.2:-84847431 | MS.gene05537:CDS |
| TCTCCCTTATGTTCCTCTCA+AGG | 0.471480 | 6.2:+84845525 | None:intergenic |
| ATTGGTGATCTGTTGGTGAA+TGG | 0.476009 | 6.2:-84849734 | MS.gene05537:CDS |
| ACCAATTGGATGTTCTTCTC+AGG | 0.479571 | 6.2:-84846535 | MS.gene05537:CDS |
| TGCCCACCGTTAGAATGGTC+AGG | 0.479577 | 6.2:+84846771 | None:intergenic |
| AGCCATGGCAATCCGTTGCT+TGG | 0.480162 | 6.2:-84846618 | MS.gene05537:CDS |
| CGATCTTCAACTATGCTTGA+CGG | 0.482981 | 6.2:-84850299 | None:intergenic |
| TTACCTTGGAGCAGAAGGTT+CGG | 0.485215 | 6.2:-84847165 | MS.gene05537:CDS |
| TCTGTAGTAGAAGCAGCGTC+AGG | 0.488188 | 6.2:+84846147 | None:intergenic |
| TGATTAAGTTGACGAAGAAT+CGG | 0.489278 | 6.2:-84849811 | MS.gene05537:CDS |
| ACCTGATAAGACACCAGATA+TGG | 0.491819 | 6.2:-84845716 | MS.gene05537:CDS |
| GCGGCCTTGAGAGGAACATA+AGG | 0.494047 | 6.2:-84845529 | None:intergenic |
| TGATCTGTTGGTGAATGGAT+TGG | 0.495157 | 6.2:-84849729 | MS.gene05537:CDS |
| CATAAATCTGACCATTCAGT+TGG | 0.495618 | 6.2:-84846837 | MS.gene05537:CDS |
| GTAATGGTTTCCCAACTGAA+TGG | 0.496753 | 6.2:+84846826 | None:intergenic |
| GTTGATGCAAGAGATTTCTT+CGG | 0.497967 | 6.2:-84847143 | MS.gene05537:CDS |
| TAAGTTGGGATGCACATGTC+GGG | 0.499564 | 6.2:+84845582 | None:intergenic |
| AGTATGCTAAAACCACCAAT+TGG | 0.501031 | 6.2:-84846549 | MS.gene05537:CDS |
| GAACCATTTGCTGTTAATCA+TGG | 0.501739 | 6.2:-84846372 | MS.gene05537:CDS |
| TCCTGAGAAGAACATCCAAT+TGG | 0.510314 | 6.2:+84846534 | None:intergenic |
| TCTTCACATATTGACAATGA+TGG | 0.515554 | 6.2:-84846201 | MS.gene05537:CDS |
| GATTGAAATCCTGCATGACT+CGG | 0.522678 | 6.2:+84846411 | None:intergenic |
| TGTCCGGGGTTTCTCTCACA+CGG | 0.524180 | 6.2:+84846454 | None:intergenic |
| TGAGAAGAACATCCAATTGG+TGG | 0.524489 | 6.2:+84846537 | None:intergenic |
| CATGCACATCAAATGGATGA+TGG | 0.527228 | 6.2:-84845739 | MS.gene05537:CDS |
| GAAGAGCTTACTTCTCAGAA+AGG | 0.527409 | 6.2:-84846591 | MS.gene05537:CDS |
| GCAGCTAAATCATCATAATC+GGG | 0.528846 | 6.2:+84845559 | None:intergenic |
| GCTAGGCTTGCGGCCTTGAG+AGG | 0.528998 | 6.2:-84845538 | MS.gene05537:CDS |
| ACTACAGAGAAAATCCGATC+AGG | 0.529429 | 6.2:-84846132 | MS.gene05537:CDS |
| CAAATATTTCAGGAGAGATA+CGG | 0.534258 | 6.2:-84847339 | MS.gene05537:CDS |
| CTGAAGCTGCGAGAAAATCA+AGG | 0.534261 | 6.2:-84845927 | MS.gene05537:CDS |
| AGGAAGTCTCCGAGTCATGC+AGG | 0.534848 | 6.2:-84846420 | MS.gene05537:CDS |
| ATCTCTTGTGATTGTTCGTG+AGG | 0.537452 | 6.2:+84845664 | None:intergenic |
| TGGATGTTAATGCTTATGGA+AGG | 0.538899 | 6.2:-84849709 | MS.gene05537:CDS |
| CAGAATTATCCAAACCTGAT+CGG | 0.539142 | 6.2:+84846118 | None:intergenic |
| TGCTCCAAGGTAAAAGACTT+CGG | 0.539298 | 6.2:+84847175 | None:intergenic |
| CGGCCTTGAGAGGAACATAA+GGG | 0.541190 | 6.2:-84845528 | None:intergenic |
| AGAATCGGATCGATGTGATA+AGG | 0.542820 | 6.2:-84849796 | MS.gene05537:CDS |
| GTCCGGGGTTTCTCTCACAC+GGG | 0.543703 | 6.2:+84846455 | None:intergenic |
| TGGTGATTTACATGATAGAA+GGG | 0.549826 | 6.2:-84846487 | MS.gene05537:CDS |
| TCGATGTGATAAGGAGGAAG+AGG | 0.553696 | 6.2:-84849787 | MS.gene05537:CDS |
| TCACGAACAATCACAAGAGA+TGG | 0.557525 | 6.2:-84845662 | MS.gene05537:CDS |
| GGTCAGATTTATGAGTATTG+TGG | 0.559085 | 6.2:+84846847 | None:intergenic |
| ATAAATCTGACCATTCAGTT+GGG | 0.559105 | 6.2:-84846836 | MS.gene05537:CDS |
| GGGATGGCATTACTGTAGTA+CGG | 0.562596 | 6.2:+84846285 | None:intergenic |
| CTTGACGGCTTACTCGGTCG+TGG | 0.565345 | 6.2:-84850284 | MS.gene05537:CDS |
| TCAAAAGGATGAAACTCCTA+AGG | 0.565572 | 6.2:-84846313 | MS.gene05537:CDS |
| CCTAGCAGTGGCAGTGTCCG+GGG | 0.566606 | 6.2:+84846440 | None:intergenic |
| CACCCGTGTGAGAGAAACCC+CGG | 0.569000 | 6.2:-84846457 | MS.gene05537:CDS |
| ATTATGATGATTTAGCTGCT+AGG | 0.570267 | 6.2:-84845555 | MS.gene05537:CDS |
| CTCTGGCCTCTCCAAGAACA+GGG | 0.570679 | 6.2:+84846034 | None:intergenic |
| TGCCTGAGAAAGCAAGAAGA+AGG | 0.573909 | 6.2:-84845774 | MS.gene05537:CDS |
| GTAAGTTGGGATGCACATGT+CGG | 0.574747 | 6.2:+84845581 | None:intergenic |
| TTCCAAGCAACGGATTGCCA+TGG | 0.575299 | 6.2:+84846616 | None:intergenic |
| TGATTTAGCTGCTAGGCTTG+CGG | 0.576201 | 6.2:-84845548 | MS.gene05537:CDS |
| GGCGCAGGCACTCGAAATCA+CGG | 0.578205 | 6.2:-84845981 | MS.gene05537:CDS |
| GATGTCAAAATCCTCTGCTA+AGG | 0.585023 | 6.2:-84847080 | MS.gene05537:intron |
| GGATTGCCATGGCTATCCCT+TGG | 0.591113 | 6.2:+84846627 | None:intergenic |
| CAACCGAACCTTCTGCTCCA+AGG | 0.593201 | 6.2:+84847162 | None:intergenic |
| TCAGAAAGGTGTCTATTGGA+AGG | 0.593385 | 6.2:-84846577 | MS.gene05537:CDS |
| TAGCTTCCCTGCATTCCTCA+GGG | 0.593501 | 6.2:+84847424 | None:intergenic |
| AAAGGTGTCTATTGGAAGGA+GGG | 0.594393 | 6.2:-84846573 | MS.gene05537:CDS |
| TCAGTTGGGAAACCATTACA+AGG | 0.596326 | 6.2:-84846822 | MS.gene05537:CDS |
| CCCCGGACACTGCCACTGCT+AGG | 0.597507 | 6.2:-84846440 | MS.gene05537:CDS |
| ACAAGATGTCAATGTTAACT+CGG | 0.603860 | 6.2:+84848711 | None:intergenic |
| GAACGATATTGGTGATCTGT+TGG | 0.606795 | 6.2:-84849741 | MS.gene05537:CDS |
| GGATGTTAATGCTTATGGAA+GGG | 0.608856 | 6.2:-84849708 | MS.gene05537:intron |
| AAGGATTCAAGCCAATCACT+AGG | 0.610407 | 6.2:-84846668 | MS.gene05537:CDS |
| TGGATGCCCTGAGGAATGCA+GGG | 0.611806 | 6.2:-84847430 | MS.gene05537:CDS |
| GTGCTTCAACACAAAATCAC+AGG | 0.613053 | 6.2:+84848669 | None:intergenic |
| GAAAGGTGTCTATTGGAAGG+AGG | 0.613520 | 6.2:-84846574 | MS.gene05537:CDS |
| AGAATGTTATGTCAATCAAG+AGG | 0.615113 | 6.2:-84847307 | MS.gene05537:intron |
| TCTCCTGAAATATTTGCCGA+AGG | 0.621342 | 6.2:+84847346 | None:intergenic |
| GTCCTGACCATTCTAACGGT+GGG | 0.623146 | 6.2:-84846773 | MS.gene05537:CDS |
| GAAACTGATCGAGGTGCACG+AGG | 0.623244 | 6.2:+84845691 | None:intergenic |
| AAAAGTCCTGACCATTCTAA+CGG | 0.623323 | 6.2:-84846777 | MS.gene05537:CDS |
| GCACAAATATCGGAATGGTA+AGG | 0.624321 | 6.2:-84846751 | MS.gene05537:CDS |
| GTGATTTACATGATAGAAGG+GGG | 0.626943 | 6.2:-84846485 | MS.gene05537:CDS |
| CGGGGTTTCTCTCACACGGG+TGG | 0.633535 | 6.2:+84846458 | None:intergenic |
| ATCGGATCGATGTGATAAGG+AGG | 0.633916 | 6.2:-84849793 | MS.gene05537:CDS |
| GGTGGGCACAAATATCGGAA+TGG | 0.637524 | 6.2:-84846756 | MS.gene05537:CDS |
| AGAATCCCCTGTTCTTGGAG+AGG | 0.640686 | 6.2:-84846040 | MS.gene05537:CDS |
| GGTGATTTACATGATAGAAG+GGG | 0.642871 | 6.2:-84846486 | MS.gene05537:CDS |
| TCAGTTTCTGTAGCACTGAG+AGG | 0.643895 | 6.2:+84848647 | None:intergenic |
| ACTCAGTCGAGCATGTCTAG+TGG | 0.647004 | 6.2:+84846080 | None:intergenic |
| ATGATGAAGTCAATCTACCA+AGG | 0.648498 | 6.2:-84846644 | MS.gene05537:CDS |
| AGTCCTGACCATTCTAACGG+TGG | 0.653470 | 6.2:-84846774 | MS.gene05537:CDS |
| CCATTTGCTGTTAATCATGG+TGG | 0.653627 | 6.2:-84846369 | MS.gene05537:CDS |
| TGATGAAGTCAATCTACCAA+GGG | 0.661992 | 6.2:-84846643 | MS.gene05537:CDS |
| ACTCGGAGACTTCCTAGCAG+TGG | 0.663654 | 6.2:+84846428 | None:intergenic |
| AATCTACCAAGGGATAGCCA+TGG | 0.679655 | 6.2:-84846633 | MS.gene05537:CDS |
| TGAGGACAACACCTTAGCAG+AGG | 0.682039 | 6.2:+84847069 | None:intergenic |
| TCTCAGTGCTACAGAAACTG+AGG | 0.697538 | 6.2:-84848645 | MS.gene05537:intron |
| CGAGTGCACCAATTTGACGA+TGG | 0.698820 | 6.2:-84846507 | MS.gene05537:CDS |
| TCTGGCCTCTCCAAGAACAG+GGG | 0.703078 | 6.2:+84846035 | None:intergenic |
| TGAGGAAGAGAAACTGATCG+AGG | 0.716604 | 6.2:+84845682 | None:intergenic |
| AAACTGATCGAGGTGCACGA+GGG | 0.725458 | 6.2:+84845692 | None:intergenic |
| AGACGAGACGAATCAAAACG+TGG | 0.739618 | 6.2:-84845898 | MS.gene05537:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTGTTTTTTTTTTTTTTT+TGG | - | chr6.2:84845967-84845986 | MS.gene05537:CDS | 10.0% |
| !! | AAACTAAAAAGTAAATGAAA+TGG | + | chr6.2:84847457-84847476 | None:intergenic | 15.0% |
| !! | AGATTATGAATATTTCAAAT+TGG | - | chr6.2:84846630-84846649 | MS.gene05537:CDS | 15.0% |
| !! | ATAGAAATTTAAAAGTCATA+TGG | - | chr6.2:84847353-84847372 | MS.gene05537:CDS | 15.0% |
| !! | ATTATAAGAATAATGATTGA+TGG | - | chr6.2:84847895-84847914 | MS.gene05537:intron | 15.0% |
| !! | CTGTATTAAATAAAATCAAA+TGG | - | chr6.2:84847617-84847636 | MS.gene05537:intron | 15.0% |
| !! | TATGTATAATTGTAATGATA+TGG | + | chr6.2:84848559-84848578 | None:intergenic | 15.0% |
| !! | TTGAAATATTCATAATCTTA+GGG | + | chr6.2:84846628-84846647 | None:intergenic | 15.0% |
| !! | TTTAGTTAAAGAATATACAA+TGG | - | chr6.2:84846438-84846457 | MS.gene05537:CDS | 15.0% |
| !! | TTTCATAATTAGAAATAGAA+TGG | - | chr6.2:84846512-84846531 | MS.gene05537:CDS | 15.0% |
| !!! | AAAATTATTCATTTTGTAGT+TGG | - | chr6.2:84848114-84848133 | MS.gene05537:intron | 15.0% |
| !!! | ACTATTTTCTTAATTTAACT+TGG | - | chr6.2:84847042-84847061 | MS.gene05537:intron | 15.0% |
| !!! | CATTTGATTTTATTTAATAC+AGG | + | chr6.2:84847619-84847638 | None:intergenic | 15.0% |
| !!! | GAAGATTTTTGTTTTAATAT+AGG | + | chr6.2:84849815-84849834 | None:intergenic | 15.0% |
| !!! | TAACTTTTTTTTATTTCTCA+GGG | - | chr6.2:84847235-84847254 | MS.gene05537:intron | 15.0% |
| !!! | TTTGAAATATTCATAATCTT+AGG | + | chr6.2:84846629-84846648 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTCTATAAGAGA+TGG | + | chr6.2:84847347-84847366 | None:intergenic | 15.0% |
| !! | AAAACTAATAGAACAATGTA+AGG | + | chr6.2:84848776-84848795 | None:intergenic | 20.0% |
| !! | AATCAATCATGTAAATAATG+AGG | + | chr6.2:84848848-84848867 | None:intergenic | 20.0% |
| !! | AATGTAAGCATATGTTAAAA+TGG | + | chr6.2:84848905-84848924 | None:intergenic | 20.0% |
| !! | AGATTATGACTATTTCAAAA+GGG | + | chr6.2:84846841-84846860 | None:intergenic | 20.0% |
| !! | ATAGTAAGTGGTTAATTATA+GGG | + | chr6.2:84846686-84846705 | None:intergenic | 20.0% |
| !! | ATCAATCATGTAAATAATGA+GGG | + | chr6.2:84848847-84848866 | None:intergenic | 20.0% |
| !! | ATTAATCTAAACAAAACAGT+GGG | + | chr6.2:84846567-84846586 | None:intergenic | 20.0% |
| !! | ATTAGTATGTGGTTAAATAT+AGG | + | chr6.2:84846752-84846771 | None:intergenic | 20.0% |
| !! | ATTGAAATGTAGTTATGATT+CGG | - | chr6.2:84845650-84845669 | MS.gene05537:CDS | 20.0% |
| !! | GTTTCTAATTAGAAATAGAA+TGG | - | chr6.2:84846338-84846357 | MS.gene05537:CDS | 20.0% |
| !! | TAGACTCTATCTAATTATAA+CGG | - | chr6.2:84847866-84847885 | MS.gene05537:intron | 20.0% |
| !! | TAGTAAGTTGTTAAACTATA+AGG | + | chr6.2:84846718-84846737 | None:intergenic | 20.0% |
| !! | TATGAAATTGTTGCAATTTA+TGG | - | chr6.2:84846187-84846206 | MS.gene05537:CDS | 20.0% |
| !! | TATTAAAACAAAAATCTTCG+AGG | - | chr6.2:84849816-84849835 | MS.gene05537:CDS | 20.0% |
| !! | TCATAAATAGTGATTTAGAA+TGG | + | chr6.2:84847498-84847517 | None:intergenic | 20.0% |
| !! | TTAACAACTTACTATTAATG+TGG | - | chr6.2:84846724-84846743 | MS.gene05537:CDS | 20.0% |
| !! | TTAGTATGTGGTTAAATATA+GGG | + | chr6.2:84846751-84846770 | None:intergenic | 20.0% |
| !!! | AAATTGATAGTATTAGTATG+TGG | + | chr6.2:84846763-84846782 | None:intergenic | 20.0% |
| !!! | AACTTTTTTTTATTTCTCAG+GGG | - | chr6.2:84847236-84847255 | MS.gene05537:intron | 20.0% |
| !!! | ACTTGTGAGAATTTTAAATT+TGG | - | chr6.2:84846996-84847015 | MS.gene05537:intron | 20.0% |
| !!! | CAAATGTATTTTATTGGTAT+TGG | + | chr6.2:84848940-84848959 | None:intergenic | 20.0% |
| !!! | CTTTTGTTATTTATTCATGT+TGG | - | chr6.2:84847644-84847663 | MS.gene05537:intron | 20.0% |
| !!! | GAGGTATAAATCTATTTTAA+TGG | - | chr6.2:84847192-84847211 | MS.gene05537:CDS | 20.0% |
| !!! | GTAACTTTTTTTTATTTCTC+AGG | - | chr6.2:84847234-84847253 | MS.gene05537:intron | 20.0% |
| !!! | TAGTCTTTTGTTTAATGTAT+TGG | - | chr6.2:84846912-84846931 | MS.gene05537:intron | 20.0% |
| !!! | TGTTTTAATATCTTTTACAG+TGG | - | chr6.2:84848368-84848387 | MS.gene05537:intron | 20.0% |
| !!! | TTAGAATTAGGTTTTACATA+AGG | + | chr6.2:84849563-84849582 | None:intergenic | 20.0% |
| !!! | TTTTAATATAGGAAATTCTC+TGG | + | chr6.2:84849804-84849823 | None:intergenic | 20.0% |
| ! | AATCCTTCTTAGATTATGTT+AGG | + | chr6.2:84846790-84846809 | None:intergenic | 25.0% |
| ! | AGAAATAGAATGGAATTTGA+GGG | - | chr6.2:84846348-84846367 | MS.gene05537:CDS | 25.0% |
| ! | AGTTATGTGAGACTATTATA+TGG | - | chr6.2:84846214-84846233 | MS.gene05537:CDS | 25.0% |
| ! | ATAAAAAAGACGAAGAAGAA+AGG | - | chr6.2:84849972-84849991 | MS.gene05537:intron | 25.0% |
| ! | ATCCTTCTTAGATTATGTTA+GGG | + | chr6.2:84846789-84846808 | None:intergenic | 25.0% |
| ! | ATCGAGAATATATAGTGTTA+GGG | + | chr6.2:84848207-84848226 | None:intergenic | 25.0% |
| ! | ATGTAAATAATGAGGGAAAA+CGG | + | chr6.2:84848840-84848859 | None:intergenic | 25.0% |
| ! | ATTAGAAAACCACCAAAAAA+AGG | + | chr6.2:84847390-84847409 | None:intergenic | 25.0% |
| ! | ATTCTATTAAACTGTCAAGT+TGG | - | chr6.2:84846659-84846678 | MS.gene05537:CDS | 25.0% |
| ! | CAAATAGGCTTTCTTATAAT+TGG | - | chr6.2:84847803-84847822 | MS.gene05537:intron | 25.0% |
| ! | GAGATTATGACTATTTCAAA+AGG | + | chr6.2:84846842-84846861 | None:intergenic | 25.0% |
| ! | GATAGTAAGTGGTTAATTAT+AGG | + | chr6.2:84846687-84846706 | None:intergenic | 25.0% |
| ! | GATTAATCTAAACAAAACAG+TGG | + | chr6.2:84846568-84846587 | None:intergenic | 25.0% |
| ! | TAAAAAAGACGAAGAAGAAA+GGG | - | chr6.2:84849973-84849992 | MS.gene05537:intron | 25.0% |
| ! | TAGAAATAGAATGGAATTTG+AGG | - | chr6.2:84846347-84846366 | MS.gene05537:CDS | 25.0% |
| ! | TATCGAGAATATATAGTGTT+AGG | + | chr6.2:84848208-84848227 | None:intergenic | 25.0% |
| ! | TTAACCACTTACTATCAATT+AGG | - | chr6.2:84846691-84846710 | MS.gene05537:CDS | 25.0% |
| ! | TTGTTAATGTAGTTATGATG+AGG | - | chr6.2:84845811-84845830 | MS.gene05537:CDS | 25.0% |
| ! | TTTAATACAGGAAAGTAAAG+TGG | + | chr6.2:84847607-84847626 | None:intergenic | 25.0% |
| ! | TTTCTTCTTCATTTGAATCA+TGG | - | chr6.2:84847263-84847282 | MS.gene05537:intron | 25.0% |
| !! | ACTTGATTTTGTTGAATTTG+TGG | - | chr6.2:84846141-84846160 | MS.gene05537:CDS | 25.0% |
| !! | ATTTGAGACTTTGTTTGATT+TGG | - | chr6.2:84846488-84846507 | MS.gene05537:CDS | 25.0% |
| !! | CACAAGCAAATGTATTTTAT+TGG | + | chr6.2:84848946-84848965 | None:intergenic | 25.0% |
| !!! | AAGTTTTTGAAGAACGATAT+TGG | - | chr6.2:84846066-84846085 | MS.gene05537:CDS | 25.0% |
| !!! | ACTGTTTTGATGTCATATAA+CGG | - | chr6.2:84847988-84848007 | MS.gene05537:intron | 25.0% |
| AAAAAAATCGAACCATTTCG+CGG | + | chr6.2:84845565-84845584 | None:intergenic | 30.0% | |
| AAAATACATTTGCTTGTGCA+GGG | - | chr6.2:84848948-84848967 | MS.gene05537:intron | 30.0% | |
| AAAATCAGGGACTAATTTAG+TGG | + | chr6.2:84846590-84846609 | None:intergenic | 30.0% | |
| AATTGGAATTTCAACTCTCA+AGG | - | chr6.2:84847820-84847839 | MS.gene05537:intron | 30.0% | |
| ACAAGATGTCAATGTTAACT+CGG | + | chr6.2:84847110-84847129 | None:intergenic | 30.0% | |
| ACGGTAACTATATCAAGAAT+TGG | + | chr6.2:84848821-84848840 | None:intergenic | 30.0% | |
| AGAATGTTATGTCAATCAAG+AGG | - | chr6.2:84848511-84848530 | MS.gene05537:intron | 30.0% | |
| AGCAGCTAAATCATCATAAT+CGG | + | chr6.2:84850263-84850282 | None:intergenic | 30.0% | |
| AGTAAAATTTGACAGAGTCA+GGG | - | chr6.2:84846814-84846833 | MS.gene05537:CDS | 30.0% | |
| AGTACAGAAATGTGAAAGAA+AGG | - | chr6.2:84847929-84847948 | MS.gene05537:intron | 30.0% | |
| ATAAATCTGACCATTCAGTT+GGG | - | chr6.2:84848982-84849001 | MS.gene05537:intron | 30.0% | |
| ATCAATCAAATTCAAGACCA+AGG | + | chr6.2:84846260-84846279 | None:intergenic | 30.0% | |
| ATGGAACACTAAATTCACAT+AGG | + | chr6.2:84847438-84847457 | None:intergenic | 30.0% | |
| ATGGTGATTTACATGATAGA+AGG | - | chr6.2:84849330-84849349 | MS.gene05537:intron | 30.0% | |
| ATTATGATGATTTAGCTGCT+AGG | - | chr6.2:84850263-84850282 | MS.gene05537:intron | 30.0% | |
| CAAATATTTCAGGAGAGATA+CGG | - | chr6.2:84848479-84848498 | MS.gene05537:intron | 30.0% | |
| CATCGTCAAACAAAATTTGT+AGG | + | chr6.2:84849946-84849965 | None:intergenic | 30.0% | |
| CGATTTACTTCAAAATTCGA+AGG | + | chr6.2:84845856-84845875 | None:intergenic | 30.0% | |
| CGGTAACTATATCAAGAATT+GGG | + | chr6.2:84848820-84848839 | None:intergenic | 30.0% | |
| CTATGCATTGTACAAAATCA+GGG | + | chr6.2:84846603-84846622 | None:intergenic | 30.0% | |
| TAAAATACATTTGCTTGTGC+AGG | - | chr6.2:84848947-84848966 | MS.gene05537:intron | 30.0% | |
| TAAAATTCTCACAAGTCCTA+AGG | + | chr6.2:84846992-84847011 | None:intergenic | 30.0% | |
| TAAATTCACATAGGAAGACA+AGG | + | chr6.2:84847429-84847448 | None:intergenic | 30.0% | |
| TCGATAATTCTTGATACGAA+TGG | - | chr6.2:84848222-84848241 | MS.gene05537:intron | 30.0% | |
| TCTTCACATATTGACAATGA+TGG | - | chr6.2:84849617-84849636 | MS.gene05537:intron | 30.0% | |
| TGATGTATTGAAGGATTTGT+TGG | + | chr6.2:84849647-84849666 | None:intergenic | 30.0% | |
| TGGTGATTTACATGATAGAA+GGG | - | chr6.2:84849331-84849350 | MS.gene05537:intron | 30.0% | |
| ! | AATGGTTATGCTTTAGATGT+GGG | - | chr6.2:84847210-84847229 | MS.gene05537:intron | 30.0% |
| ! | ACCTACGGAATGAATAATTT+TGG | + | chr6.2:84847956-84847975 | None:intergenic | 30.0% |
| ! | ATTGATGATACTGTTAGTCA+AGG | - | chr6.2:84846274-84846293 | MS.gene05537:CDS | 30.0% |
| ! | CCTACGGAATGAATAATTTT+GGG | + | chr6.2:84847955-84847974 | None:intergenic | 30.0% |
| ! | GAATTAGGTTTTACATAAGG+TGG | + | chr6.2:84849560-84849579 | None:intergenic | 30.0% |
| ! | GATGTATTGAAGGATTTGTT+GGG | + | chr6.2:84849646-84849665 | None:intergenic | 30.0% |
| ! | TAATGGTTATGCTTTAGATG+TGG | - | chr6.2:84847209-84847228 | MS.gene05537:intron | 30.0% |
| ! | TAATTCTGAACATGATTTGC+AGG | - | chr6.2:84849715-84849734 | MS.gene05537:CDS | 30.0% |
| ! | TGTAGTTATGATGAGGTTTT+AGG | - | chr6.2:84845818-84845837 | MS.gene05537:CDS | 30.0% |
| ! | TTCGGAGTTTTCAATAAAGT+GGG | - | chr6.2:84848693-84848712 | MS.gene05537:CDS | 30.0% |
| !! | CTTGTTATGATTTTGTTGAG+TGG | - | chr6.2:84847125-84847144 | MS.gene05537:CDS | 30.0% |
| !! | TATTCATGAGATGGTTTTAC+AGG | - | chr6.2:84847069-84847088 | MS.gene05537:intron | 30.0% |
| !! | TGATTAAGTTGACGAAGAAT+CGG | - | chr6.2:84846007-84846026 | MS.gene05537:CDS | 30.0% |
| !! | TTAGTAACATTTTAGTGTGC+TGG | - | chr6.2:84847532-84847551 | MS.gene05537:intron | 30.0% |
| !!! | AGTAAGTTTTGTTCTACCTA+CGG | + | chr6.2:84847971-84847990 | None:intergenic | 30.0% |
| !!! | TCTGAATGTTGATGATGTTT+TGG | - | chr6.2:84846463-84846482 | MS.gene05537:CDS | 30.0% |
| AAAAGTCCTGACCATTCTAA+CGG | - | chr6.2:84849041-84849060 | MS.gene05537:intron | 35.0% | |
| AAACCACCAAAAAAAGGAAG+TGG | + | chr6.2:84847384-84847403 | None:intergenic | 35.0% | |
| AAATCTAAGCTCCCTGAAAA+AGG | - | chr6.2:84849131-84849150 | MS.gene05537:intron | 35.0% | |
| AATAGAACAATGTAAGGCTG+AGG | + | chr6.2:84848770-84848789 | None:intergenic | 35.0% | |
| ACTTCATCATACCTAGTGAT+TGG | + | chr6.2:84849164-84849183 | None:intergenic | 35.0% | |
| AGCTTCAGCATCTTCTTTAT+TGG | + | chr6.2:84849879-84849898 | None:intergenic | 35.0% | |
| AGTATGCTAAAACCACCAAT+TGG | - | chr6.2:84849269-84849288 | MS.gene05537:intron | 35.0% | |
| ATCATCATAATCGGGTAAGT+TGG | + | chr6.2:84850254-84850273 | None:intergenic | 35.0% | |
| ATGATGAAGTCAATCTACCA+AGG | - | chr6.2:84849174-84849193 | MS.gene05537:intron | 35.0% | |
| ATTCTTGATACGAATGGAAC+AGG | - | chr6.2:84848228-84848247 | MS.gene05537:intron | 35.0% | |
| ATTGATACAATCAACATGCC+AGG | - | chr6.2:84847292-84847311 | MS.gene05537:intron | 35.0% | |
| CAGAATTATCCAAACCTGAT+CGG | + | chr6.2:84849703-84849722 | None:intergenic | 35.0% | |
| CAGCATTTCACATGAACTAT+TGG | + | chr6.2:84848268-84848287 | None:intergenic | 35.0% | |
| CATAAATCTGACCATTCAGT+TGG | - | chr6.2:84848981-84849000 | MS.gene05537:intron | 35.0% | |
| CATCCTCAGTTCAAAATCTT+TGG | + | chr6.2:84848722-84848741 | None:intergenic | 35.0% | |
| CCCAAAATTATTCATTCCGT+AGG | - | chr6.2:84847952-84847971 | MS.gene05537:intron | 35.0% | |
| CCTATGCATTGTACAAAATC+AGG | + | chr6.2:84846604-84846623 | None:intergenic | 35.0% | |
| CGATTGATATAGTTATGCCT+TGG | - | chr6.2:84846240-84846259 | MS.gene05537:CDS | 35.0% | |
| CTCTCAGAGAAAAGTTCAAA+AGG | - | chr6.2:84849490-84849509 | MS.gene05537:intron | 35.0% | |
| CTTGGATCATATTCATGAGA+TGG | - | chr6.2:84847060-84847079 | MS.gene05537:intron | 35.0% | |
| GAATCGATAATAGAGACCTT+AGG | - | chr6.2:84846973-84846992 | MS.gene05537:intron | 35.0% | |
| GAGTAAAATTTGACAGAGTC+AGG | - | chr6.2:84846813-84846832 | MS.gene05537:CDS | 35.0% | |
| GCAATTTAATCAGTCAGTTC+AGG | + | chr6.2:84848595-84848614 | None:intergenic | 35.0% | |
| GCAGCTAAATCATCATAATC+GGG | + | chr6.2:84850262-84850281 | None:intergenic | 35.0% | |
| GCATACAACTTTGAGCAAAT+AGG | - | chr6.2:84847788-84847807 | MS.gene05537:intron | 35.0% | |
| GGATGTTAATGCTTATGGAA+GGG | - | chr6.2:84846110-84846129 | MS.gene05537:CDS | 35.0% | |
| GGATTGGATGTTAATGCTTA+TGG | - | chr6.2:84846105-84846124 | MS.gene05537:CDS | 35.0% | |
| GGTGATTTACATGATAGAAG+GGG | - | chr6.2:84849332-84849351 | MS.gene05537:intron | 35.0% | |
| GTAAATCACCATCGTCAAAT+TGG | + | chr6.2:84849322-84849341 | None:intergenic | 35.0% | |
| GTCCCTAACATAATCTAAGA+AGG | - | chr6.2:84846784-84846803 | MS.gene05537:CDS | 35.0% | |
| GTGATTTACATGATAGAAGG+GGG | - | chr6.2:84849333-84849352 | MS.gene05537:intron | 35.0% | |
| GTTAGTCAAGGAATGTAGAA+TGG | - | chr6.2:84846286-84846305 | MS.gene05537:CDS | 35.0% | |
| GTTGATGCAAGAGATTTCTT+CGG | - | chr6.2:84848675-84848694 | MS.gene05537:CDS | 35.0% | |
| TCAAAAGGATGAAACTCCTA+AGG | - | chr6.2:84849505-84849524 | MS.gene05537:intron | 35.0% | |
| TCATCATAATCGGGTAAGTT+GGG | + | chr6.2:84850253-84850272 | None:intergenic | 35.0% | |
| TCTATACAGTATATGAAGCC+TGG | + | chr6.2:84847313-84847332 | None:intergenic | 35.0% | |
| TGATGAAGTCAATCTACCAA+GGG | - | chr6.2:84849175-84849194 | MS.gene05537:intron | 35.0% | |
| TGGATGTTAATGCTTATGGA+AGG | - | chr6.2:84846109-84846128 | MS.gene05537:CDS | 35.0% | |
| TGTTAAAATGGTTTCCCGAA+AGG | + | chr6.2:84848893-84848912 | None:intergenic | 35.0% | |
| TTCTTGATACGAATGGAACA+GGG | - | chr6.2:84848229-84848248 | MS.gene05537:intron | 35.0% | |
| ! | ACTCCAAAGATTTTGAACTG+AGG | - | chr6.2:84848716-84848735 | MS.gene05537:CDS | 35.0% |
| ! | AGGACCTAATTGATAGTAAG+TGG | + | chr6.2:84846698-84846717 | None:intergenic | 35.0% |
| ! | CATGATTGATTTAGTCATCG+AGG | - | chr6.2:84848857-84848876 | MS.gene05537:intron | 35.0% |
| ! | CCTGATTTTGTACAATGCAT+AGG | - | chr6.2:84846601-84846620 | MS.gene05537:CDS | 35.0% |
| ! | CTCGTCTTGAGTTTAGAATT+AGG | + | chr6.2:84849575-84849594 | None:intergenic | 35.0% |
| ! | CTTCGGAGTTTTCAATAAAG+TGG | - | chr6.2:84848692-84848711 | MS.gene05537:CDS | 35.0% |
| ! | GGTCAGATTTATGAGTATTG+TGG | + | chr6.2:84848974-84848993 | None:intergenic | 35.0% |
| ! | TAGGTTTTACATAAGGTGGT+GGG | + | chr6.2:84849556-84849575 | None:intergenic | 35.0% |
| ! | TCAGGCTTTTGATGTATTGA+AGG | + | chr6.2:84849656-84849675 | None:intergenic | 35.0% |
| ! | TTAGGTTTTACATAAGGTGG+TGG | + | chr6.2:84849557-84849576 | None:intergenic | 35.0% |
| !! | GAACCATTTGCTGTTAATCA+TGG | - | chr6.2:84849446-84849465 | MS.gene05537:intron | 35.0% |
| !! | TTGGCTTGAATCCTTTTTCA+GGG | + | chr6.2:84849145-84849164 | None:intergenic | 35.0% |
| !! | TTTTCAGGGAGCTTAGATTT+GGG | + | chr6.2:84849131-84849150 | None:intergenic | 35.0% |
| !!! | ATTGGCTTGAATCCTTTTTC+AGG | + | chr6.2:84849146-84849165 | None:intergenic | 35.0% |
| !!! | CGAGGTTTTTGTTTTCCTTT+CGG | - | chr6.2:84848875-84848894 | MS.gene05537:intron | 35.0% |
| !!! | GAGGTTTTTGTTTTCCTTTC+GGG | - | chr6.2:84848876-84848895 | MS.gene05537:intron | 35.0% |
| !!! | GTCTAACCACTTCCTTTTTT+TGG | - | chr6.2:84847375-84847394 | MS.gene05537:CDS | 35.0% |
| !!! | TAACCACTTCCTTTTTTTGG+TGG | - | chr6.2:84847378-84847397 | MS.gene05537:CDS | 35.0% |
| !!! | TGGTTGGCTTTTTGCTATAA+TGG | + | chr6.2:84850018-84850037 | None:intergenic | 35.0% |
| !!! | TTTTTCAGGGAGCTTAGATT+TGG | + | chr6.2:84849132-84849151 | None:intergenic | 35.0% |
| AAATCCGTCCATGACTTTGT+AGG | + | chr6.2:84846885-84846904 | None:intergenic | 40.0% | |
| AAGGATTCAAGCCAATCACT+AGG | - | chr6.2:84849150-84849169 | MS.gene05537:intron | 40.0% | |
| AAGTCGTCATGCACATCAAA+TGG | - | chr6.2:84850072-84850091 | MS.gene05537:intron | 40.0% | |
| AATCCGTCCATGACTTTGTA+GGG | + | chr6.2:84846884-84846903 | None:intergenic | 40.0% | |
| ACCAATTGGATGTTCTTCTC+AGG | - | chr6.2:84849283-84849302 | MS.gene05537:intron | 40.0% | |
| ACCATATCTGGTGTCTTATC+AGG | + | chr6.2:84850106-84850125 | None:intergenic | 40.0% | |
| ACCTGATAAGACACCAGATA+TGG | - | chr6.2:84850102-84850121 | MS.gene05537:intron | 40.0% | |
| ACTACAGAGAAAATCCGATC+AGG | - | chr6.2:84849686-84849705 | MS.gene05537:intron | 40.0% | |
| AGAATCGGATCGATGTGATA+AGG | - | chr6.2:84846022-84846041 | MS.gene05537:CDS | 40.0% | |
| AGAGAAAATCCGATCAGGTT+TGG | - | chr6.2:84849691-84849710 | MS.gene05537:intron | 40.0% | |
| ATCTCAGACTTGCCTTGTAA+TGG | + | chr6.2:84849011-84849030 | None:intergenic | 40.0% | |
| ATCTCTTGTGATTGTTCGTG+AGG | + | chr6.2:84850157-84850176 | None:intergenic | 40.0% | |
| CATGCACATCAAATGGATGA+TGG | - | chr6.2:84850079-84850098 | MS.gene05537:intron | 40.0% | |
| CCACCATGATTAACAGCAAA+TGG | + | chr6.2:84849452-84849471 | None:intergenic | 40.0% | |
| GAAGAGCTTACTTCTCAGAA+AGG | - | chr6.2:84849227-84849246 | MS.gene05537:intron | 40.0% | |
| GATGTCAAAATCCTCTGCTA+AGG | - | chr6.2:84848738-84848757 | MS.gene05537:intron | 40.0% | |
| GATTGAAATCCTGCATGACT+CGG | + | chr6.2:84849410-84849429 | None:intergenic | 40.0% | |
| GCACAAATATCGGAATGGTA+AGG | - | chr6.2:84849067-84849086 | MS.gene05537:intron | 40.0% | |
| GTAATGGTTTCCCAACTGAA+TGG | + | chr6.2:84848995-84849014 | None:intergenic | 40.0% | |
| GTGCTTCAACACAAAATCAC+AGG | + | chr6.2:84847152-84847171 | None:intergenic | 40.0% | |
| TCACGAACAATCACAAGAGA+TGG | - | chr6.2:84850156-84850175 | MS.gene05537:intron | 40.0% | |
| TCAGTTGGGAAACCATTACA+AGG | - | chr6.2:84848996-84849015 | MS.gene05537:intron | 40.0% | |
| TCCTGAGAAGAACATCCAAT+TGG | + | chr6.2:84849287-84849306 | None:intergenic | 40.0% | |
| TCTCCTGAAATATTTGCCGA+AGG | + | chr6.2:84848475-84848494 | None:intergenic | 40.0% | |
| TCTTGATACGAATGGAACAG+GGG | - | chr6.2:84848230-84848249 | MS.gene05537:intron | 40.0% | |
| TGAGAAGAACATCCAATTGG+TGG | + | chr6.2:84849284-84849303 | None:intergenic | 40.0% | |
| TGCAATATGTATGAAGACCC+CGG | + | chr6.2:84847758-84847777 | None:intergenic | 40.0% | |
| TGCTCCAAGGTAAAAGACTT+CGG | + | chr6.2:84848646-84848665 | None:intergenic | 40.0% | |
| TTTCCAGCTGAATATAGCTC+CGG | - | chr6.2:84847736-84847755 | MS.gene05537:intron | 40.0% | |
| ! | AGCTCTTCTTTTCCAAGCAA+CGG | + | chr6.2:84849215-84849234 | None:intergenic | 40.0% |
| ! | ATTGGTGATCTGTTGGTGAA+TGG | - | chr6.2:84846084-84846103 | MS.gene05537:CDS | 40.0% |
| ! | CTCTGAGAGTTATCAAGATC+AGG | + | chr6.2:84849479-84849498 | None:intergenic | 40.0% |
| ! | GAACGATATTGGTGATCTGT+TGG | - | chr6.2:84846077-84846096 | MS.gene05537:CDS | 40.0% |
| ! | GAATCCGAAGTCTTTTACCT+TGG | - | chr6.2:84848639-84848658 | MS.gene05537:intron | 40.0% |
| ! | TACAAAGTCATGGACGGATT+TGG | - | chr6.2:84846884-84846903 | MS.gene05537:intron | 40.0% |
| ! | TGATCTGTTGGTGAATGGAT+TGG | - | chr6.2:84846089-84846108 | MS.gene05537:CDS | 40.0% |
| ! | TTTGTAGGGTGCTCTCAAAT+AGG | + | chr6.2:84846870-84846889 | None:intergenic | 40.0% |
| !! | AAAGGTGTCTATTGGAAGGA+GGG | - | chr6.2:84849245-84849264 | MS.gene05537:intron | 40.0% |
| !! | CCATTTGCTGTTAATCATGG+TGG | - | chr6.2:84849449-84849468 | MS.gene05537:intron | 40.0% |
| !! | CTTCTCAGAAAGGTGTCTAT+TGG | - | chr6.2:84849237-84849256 | MS.gene05537:intron | 40.0% |
| !! | TCAGAAAGGTGTCTATTGGA+AGG | - | chr6.2:84849241-84849260 | MS.gene05537:intron | 40.0% |
| !!! | TTTTACATAAGGTGGTGGGA+TGG | + | chr6.2:84849552-84849571 | None:intergenic | 40.0% |
| AACAAAAATCTTCGAGGCGC+AGG | - | chr6.2:84849822-84849841 | MS.gene05537:CDS | 45.0% | |
| AATCTACCAAGGGATAGCCA+TGG | - | chr6.2:84849185-84849204 | MS.gene05537:intron | 45.0% | |
| ACATGCTCGACTGAGTAAAC+AGG | - | chr6.2:84849745-84849764 | MS.gene05537:CDS | 45.0% | |
| AGACGAGACGAATCAAAACG+TGG | - | chr6.2:84849920-84849939 | MS.gene05537:intron | 45.0% | |
| ATCGGATCGATGTGATAAGG+AGG | - | chr6.2:84846025-84846044 | MS.gene05537:CDS | 45.0% | |
| ATTTGTGCCCACCGTTAGAA+TGG | + | chr6.2:84849055-84849074 | None:intergenic | 45.0% | |
| CAGGAAAGTAAAGTGGCAAC+AGG | + | chr6.2:84847600-84847619 | None:intergenic | 45.0% | |
| CGACCTTCGGCAAATATTTC+AGG | - | chr6.2:84848469-84848488 | MS.gene05537:intron | 45.0% | |
| CTAACGGTGGGCACAAATAT+CGG | - | chr6.2:84849057-84849076 | MS.gene05537:intron | 45.0% | |
| CTGAAGCTGCGAGAAAATCA+AGG | - | chr6.2:84849891-84849910 | MS.gene05537:intron | 45.0% | |
| CTTGATACGAATGGAACAGG+GGG | - | chr6.2:84848231-84848250 | MS.gene05537:intron | 45.0% | |
| GACCTTCTTCTTGCTTTCTC+AGG | + | chr6.2:84850049-84850068 | None:intergenic | 45.0% | |
| GAGAAAGAATCCCCTGTTCT+TGG | - | chr6.2:84849773-84849792 | MS.gene05537:CDS | 45.0% | |
| GGAAGACAAGGAGAAAAGTC+AGG | + | chr6.2:84847417-84847436 | None:intergenic | 45.0% | |
| GGGATGGCATTACTGTAGTA+CGG | + | chr6.2:84849536-84849555 | None:intergenic | 45.0% | |
| TCGATGTGATAAGGAGGAAG+AGG | - | chr6.2:84846031-84846050 | MS.gene05537:CDS | 45.0% | |
| TCTCAGTGCTACAGAAACTG+AGG | - | chr6.2:84847173-84847192 | MS.gene05537:CDS | 45.0% | |
| TGAGCTGCTCATCTGAGTAT+TGG | - | chr6.2:84848181-84848200 | MS.gene05537:intron | 45.0% | |
| TGAGGAAGAGAAACTGATCG+AGG | + | chr6.2:84850139-84850158 | None:intergenic | 45.0% | |
| TGATTTAGCTGCTAGGCTTG+CGG | - | chr6.2:84850270-84850289 | MS.gene05537:CDS | 45.0% | |
| TGCCTGAGAAAGCAAGAAGA+AGG | - | chr6.2:84850044-84850063 | MS.gene05537:intron | 45.0% | |
| TGCTTTCTCAGGCACATTGA+TGG | + | chr6.2:84850038-84850057 | None:intergenic | 45.0% | |
| TTACCTTGGAGCAGAAGGTT+CGG | - | chr6.2:84848653-84848672 | MS.gene05537:CDS | 45.0% | |
| TTCCAGCTGAATATAGCTCC+GGG | - | chr6.2:84847737-84847756 | MS.gene05537:intron | 45.0% | |
| ! | CGGGCTTCTTTTGATCTATC+TGG | + | chr6.2:84850220-84850239 | None:intergenic | 45.0% |
| ! | GTAAGTTGGGATGCACATGT+CGG | + | chr6.2:84850240-84850259 | None:intergenic | 45.0% |
| ! | GTCTTTTACCTTGGAGCAGA+AGG | - | chr6.2:84848648-84848667 | MS.gene05537:CDS | 45.0% |
| ! | TAAGTTGGGATGCACATGTC+GGG | + | chr6.2:84850239-84850258 | None:intergenic | 45.0% |
| ! | TCAGTTTCTGTAGCACTGAG+AGG | + | chr6.2:84847174-84847193 | None:intergenic | 45.0% |
| ! | TTCTCAGGCACATTGATGGT+TGG | + | chr6.2:84850034-84850053 | None:intergenic | 45.0% |
| !! | GAAAGGTGTCTATTGGAAGG+AGG | - | chr6.2:84849244-84849263 | MS.gene05537:intron | 45.0% |
| !! | GAGATGGTTTTACAGGCTGA+AGG | - | chr6.2:84847076-84847095 | MS.gene05537:intron | 45.0% |
| AAACTGATCGAGGTGCACGA+GGG | + | chr6.2:84850129-84850148 | None:intergenic | 50.0% | |
| ACTCAGTCGAGCATGTCTAG+TGG | + | chr6.2:84849741-84849760 | None:intergenic | 50.0% | |
| AGAATCCCCTGTTCTTGGAG+AGG | - | chr6.2:84849778-84849797 | MS.gene05537:CDS | 50.0% | |
| AGTCCTGACCATTCTAACGG+TGG | - | chr6.2:84849044-84849063 | MS.gene05537:intron | 50.0% | |
| ATAGCTTCCCTGCATTCCTC+AGG | + | chr6.2:84848398-84848417 | None:intergenic | 50.0% | |
| CGAGTGCACCAATTTGACGA+TGG | - | chr6.2:84849311-84849330 | MS.gene05537:intron | 50.0% | |
| GCACCCTACAAAGTCATGGA+CGG | - | chr6.2:84846878-84846897 | MS.gene05537:intron | 50.0% | |
| GGTGGGCACAAATATCGGAA+TGG | - | chr6.2:84849062-84849081 | MS.gene05537:intron | 50.0% | |
| GTCCTGACCATTCTAACGGT+GGG | - | chr6.2:84849045-84849064 | MS.gene05537:intron | 50.0% | |
| TACCAGAGTTACGCGACCTT+CGG | - | chr6.2:84848456-84848475 | MS.gene05537:intron | 50.0% | |
| TAGCTTCCCTGCATTCCTCA+GGG | + | chr6.2:84848397-84848416 | None:intergenic | 50.0% | |
| TCCAGCTGAATATAGCTCCG+GGG | - | chr6.2:84847738-84847757 | MS.gene05537:intron | 50.0% | |
| TCTGTAGTAGAAGCAGCGTC+AGG | + | chr6.2:84849674-84849693 | None:intergenic | 50.0% | |
| TGAGGACAACACCTTAGCAG+AGG | + | chr6.2:84848752-84848771 | None:intergenic | 50.0% | |
| ! | CTTTTACAGTGGATGCCCTG+AGG | - | chr6.2:84848379-84848398 | MS.gene05537:intron | 50.0% |
| !! | GAGAGCACCCTACAAAGTCA+TGG | - | chr6.2:84846874-84846893 | MS.gene05537:intron | 50.0% |
| !! | TTCCAAGCAACGGATTGCCA+TGG | + | chr6.2:84849205-84849224 | None:intergenic | 50.0% |
| ACCCCGGAGCTATATTCAGC+TGG | + | chr6.2:84847742-84847761 | None:intergenic | 55.0% | |
| ACTCGGAGACTTCCTAGCAG+TGG | + | chr6.2:84849393-84849412 | None:intergenic | 55.0% | |
| AGCCATGGCAATCCGTTGCT+TGG | - | chr6.2:84849200-84849219 | MS.gene05537:intron | 55.0% | |
| AGGAAGTCTCCGAGTCATGC+AGG | - | chr6.2:84849398-84849417 | MS.gene05537:intron | 55.0% | |
| CAACCGAACCTTCTGCTCCA+AGG | + | chr6.2:84848659-84848678 | None:intergenic | 55.0% | |
| CTCTGGCCTCTCCAAGAACA+GGG | + | chr6.2:84849787-84849806 | None:intergenic | 55.0% | |
| GAAACTGATCGAGGTGCACG+AGG | + | chr6.2:84850130-84850149 | None:intergenic | 55.0% | |
| GGATTGCCATGGCTATCCCT+TGG | + | chr6.2:84849194-84849213 | None:intergenic | 55.0% | |
| TCTCTGGCCTCTCCAAGAAC+AGG | + | chr6.2:84849788-84849807 | None:intergenic | 55.0% | |
| TCTGGCCTCTCCAAGAACAG+GGG | + | chr6.2:84849786-84849805 | None:intergenic | 55.0% | |
| TGCCCACCGTTAGAATGGTC+AGG | + | chr6.2:84849050-84849069 | None:intergenic | 55.0% | |
| TGGATGCCCTGAGGAATGCA+GGG | - | chr6.2:84848388-84848407 | MS.gene05537:intron | 55.0% | |
| TGTCCGGGGTTTCTCTCACA+CGG | + | chr6.2:84849367-84849386 | None:intergenic | 55.0% | |
| TTCCTAGCAGTGGCAGTGTC+CGG | + | chr6.2:84849383-84849402 | None:intergenic | 55.0% | |
| CACCCGTGTGAGAGAAACCC+CGG | - | chr6.2:84849361-84849380 | MS.gene05537:intron | 60.0% | |
| CTTGACGGCTTACTCGGTCG+TGG | - | chr6.2:84845534-84845553 | MS.gene05537:CDS | 60.0% | |
| GGCGCAGGCACTCGAAATCA+CGG | - | chr6.2:84849837-84849856 | MS.gene05537:intron | 60.0% | |
| GGTGCACGAGGGACCATATC+TGG | + | chr6.2:84850118-84850137 | None:intergenic | 60.0% | |
| GTCCGGGGTTTCTCTCACAC+GGG | + | chr6.2:84849366-84849385 | None:intergenic | 60.0% | |
| GTCGTGGATTCGCCGCGAAA+TGG | - | chr6.2:84845550-84845569 | MS.gene05537:CDS | 60.0% | |
| GTGGATGCCCTGAGGAATGC+AGG | - | chr6.2:84848387-84848406 | MS.gene05537:intron | 60.0% | |
| TCCTAGCAGTGGCAGTGTCC+GGG | + | chr6.2:84849382-84849401 | None:intergenic | 60.0% | |
| TGCCGAAGGTCGCGTAACTC+TGG | + | chr6.2:84848461-84848480 | None:intergenic | 60.0% | |
| CCTAGCAGTGGCAGTGTCCG+GGG | + | chr6.2:84849381-84849400 | None:intergenic | 65.0% | |
| CGGGGTTTCTCTCACACGGG+TGG | + | chr6.2:84849363-84849382 | None:intergenic | 65.0% | |
| GCTAGGCTTGCGGCCTTGAG+AGG | - | chr6.2:84850280-84850299 | MS.gene05537:CDS | 65.0% | |
| CCCCGGACACTGCCACTGCT+AGG | - | chr6.2:84849378-84849397 | MS.gene05537:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 84845531 | 84850309 | 84845531 | ID=MS.gene05537 |
| chr6.2 | mRNA | 84845531 | 84850309 | 84845531 | ID=MS.gene05537.t1;Parent=MS.gene05537 |
| chr6.2 | exon | 84850269 | 84850309 | 84850269 | ID=MS.gene05537.t1.exon1;Parent=MS.gene05537.t1 |
| chr6.2 | CDS | 84850269 | 84850309 | 84850269 | ID=cds.MS.gene05537.t1;Parent=MS.gene05537.t1 |
| chr6.2 | exon | 84849709 | 84849841 | 84849709 | ID=MS.gene05537.t1.exon2;Parent=MS.gene05537.t1 |
| chr6.2 | CDS | 84849709 | 84849841 | 84849709 | ID=cds.MS.gene05537.t1;Parent=MS.gene05537.t1 |
| chr6.2 | exon | 84848646 | 84848749 | 84848646 | ID=MS.gene05537.t1.exon3;Parent=MS.gene05537.t1 |
| chr6.2 | CDS | 84848646 | 84848749 | 84848646 | ID=cds.MS.gene05537.t1;Parent=MS.gene05537.t1 |
| chr6.2 | exon | 84847308 | 84847452 | 84847308 | ID=MS.gene05537.t1.exon4;Parent=MS.gene05537.t1 |
| chr6.2 | CDS | 84847308 | 84847452 | 84847308 | ID=cds.MS.gene05537.t1;Parent=MS.gene05537.t1 |
| chr6.2 | exon | 84847081 | 84847215 | 84847081 | ID=MS.gene05537.t1.exon5;Parent=MS.gene05537.t1 |
| chr6.2 | CDS | 84847081 | 84847215 | 84847081 | ID=cds.MS.gene05537.t1;Parent=MS.gene05537.t1 |
| chr6.2 | exon | 84845531 | 84846871 | 84845531 | ID=MS.gene05537.t1.exon6;Parent=MS.gene05537.t1 |
| chr6.2 | CDS | 84845531 | 84846871 | 84845531 | ID=cds.MS.gene05537.t1;Parent=MS.gene05537.t1 |
| Gene Sequence |
| Protein sequence |
