Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27321.t1 | XP_013466092.1 | 93.8 | 276 | 16 | 1 | 55 | 330 | 18 | 292 | 3.30E-148 | 534.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27321.t1 | Q8GUH2 | 35.5 | 276 | 148 | 12 | 78 | 330 | 14 | 282 | 7.3e-27 | 122.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27321.t1 | A0A072VEU8 | 93.8 | 276 | 16 | 1 | 55 | 330 | 23 | 297 | 2.4e-148 | 534.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053301 | MS.gene27321 | 0.945658 | 2.02E-104 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27321.t1 | MTR_1g022190 | 93.841 | 276 | 16 | 1 | 55 | 330 | 18 | 292 | 0.0 | 538 |
| MS.gene27321.t1 | MTR_1g022190 | 93.841 | 276 | 16 | 1 | 55 | 330 | 23 | 297 | 0.0 | 538 |
| MS.gene27321.t1 | MTR_1g022190 | 94.382 | 267 | 15 | 0 | 64 | 330 | 1 | 267 | 0.0 | 530 |
| MS.gene27321.t1 | MTR_1g022190 | 94.286 | 245 | 13 | 1 | 55 | 299 | 18 | 261 | 5.52e-170 | 474 |
| MS.gene27321.t1 | MTR_4g070020 | 41.724 | 290 | 143 | 9 | 76 | 348 | 8 | 288 | 7.29e-67 | 213 |
| MS.gene27321.t1 | MTR_4g070020 | 46.875 | 224 | 102 | 5 | 76 | 286 | 8 | 227 | 1.88e-62 | 200 |
| MS.gene27321.t1 | MTR_8g028630 | 34.201 | 269 | 154 | 10 | 100 | 348 | 15 | 280 | 2.21e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27321.t1 | AT1G75180 | 49.219 | 256 | 107 | 7 | 111 | 348 | 42 | 292 | 9.21e-71 | 223 |
| MS.gene27321.t1 | AT1G75180 | 49.219 | 256 | 107 | 7 | 111 | 348 | 42 | 292 | 9.21e-71 | 223 |
| MS.gene27321.t1 | AT1G19400 | 47.222 | 252 | 112 | 7 | 82 | 321 | 11 | 253 | 5.33e-70 | 221 |
| MS.gene27321.t1 | AT1G19400 | 47.222 | 252 | 112 | 7 | 82 | 321 | 11 | 253 | 5.33e-70 | 221 |
| MS.gene27321.t1 | AT1G19400 | 47.222 | 252 | 112 | 7 | 82 | 321 | 11 | 253 | 5.33e-70 | 221 |
| MS.gene27321.t1 | AT1G19400 | 49.780 | 227 | 96 | 5 | 74 | 289 | 7 | 226 | 6.05e-69 | 216 |
| MS.gene27321.t1 | AT1G75180 | 54.737 | 190 | 71 | 4 | 111 | 286 | 42 | 230 | 1.32e-62 | 200 |
| MS.gene27321.t1 | AT1G75180 | 54.211 | 190 | 72 | 3 | 111 | 286 | 42 | 230 | 1.20e-61 | 198 |
| MS.gene27321.t1 | AT1G01500 | 36.059 | 269 | 140 | 14 | 106 | 348 | 42 | 304 | 1.75e-33 | 126 |
Find 39 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAATGCTCTTCTTCTTC+TGG | 0.227081 | 1.2:-2460109 | None:intergenic |
| TCGAGTTTGTACAATATTTC+AGG | 0.240366 | 1.2:+2457337 | MS.gene27321:CDS |
| AAAAGTGTATCAGGACTTAA+AGG | 0.253465 | 1.2:-2457687 | None:intergenic |
| ACAATCAACGAAACAGTTAA+AGG | 0.256351 | 1.2:-2457378 | None:intergenic |
| GCAACATAAACTTCAATTTC+AGG | 0.260900 | 1.2:-2457993 | None:intergenic |
| AGTGTCCTAGTTAAGATTAT+AGG | 0.277513 | 1.2:-2458035 | None:intergenic |
| ACAGATAGTATAAGAATAAA+TGG | 0.288585 | 1.2:+2457813 | MS.gene27321:CDS |
| ATGATAATGAGAAGAGATAT+TGG | 0.323687 | 1.2:+2457904 | MS.gene27321:CDS |
| AAAAGTTTAATTGTTGTCAT+TGG | 0.330187 | 1.2:+2460575 | MS.gene27321:CDS |
| TGTTTCGTTGATTGTGAAAC+AGG | 0.345089 | 1.2:+2457386 | MS.gene27321:CDS |
| ATTGCAGGAAGAAACATAAT+AGG | 0.362814 | 1.2:+2458066 | MS.gene27321:CDS |
| GAAATTGAAGTTTATGTTGC+TGG | 0.381875 | 1.2:+2457996 | MS.gene27321:CDS |
| TATGAATTGTGAAACAGAAA+TGG | 0.385595 | 1.2:+2457929 | MS.gene27321:CDS |
| TTTACCTCTAAAAGTGTATC+AGG | 0.386768 | 1.2:-2457696 | None:intergenic |
| AAGATTCTTCAATTCTAAGA+AGG | 0.437779 | 1.2:+2457748 | MS.gene27321:CDS |
| GGACACTGCAGATCAATTGC+AGG | 0.447539 | 1.2:+2458051 | MS.gene27321:CDS |
| TTAATGCATGATGGATCATA+AGG | 0.452740 | 1.2:-2457558 | None:intergenic |
| TATCTATATATCCTTCCCTT+TGG | 0.458465 | 1.2:-2460144 | None:intergenic |
| AAGGGAAGGATATATAGATA+TGG | 0.466582 | 1.2:+2460147 | MS.gene27321:CDS |
| ATGAATTGTGAAACAGAAAT+GGG | 0.487805 | 1.2:+2457930 | MS.gene27321:CDS |
| GATGTTTGTGATCATGATCA+TGG | 0.514929 | 1.2:+2458143 | MS.gene27321:CDS |
| AATGATAATTTAATGCATGA+TGG | 0.535072 | 1.2:-2457567 | None:intergenic |
| ACAGAAATGGGACCTAATAG+TGG | 0.538208 | 1.2:+2457942 | MS.gene27321:CDS |
| CAACAACATGTATTGCCAAA+GGG | 0.547747 | 1.2:+2460129 | MS.gene27321:CDS |
| TGATCATGGACTTGTTTCAC+AGG | 0.556098 | 1.2:+2458157 | MS.gene27321:CDS |
| GGATATATAGATATGGAAGA+TGG | 0.561870 | 1.2:+2460154 | MS.gene27321:CDS |
| AGATTCTTCAATTCTAAGAA+GGG | 0.575943 | 1.2:+2457749 | MS.gene27321:CDS |
| GAAAACCTATAATCTTAACT+AGG | 0.581947 | 1.2:+2458030 | MS.gene27321:CDS |
| AACATGTATTGCCAAAGGGA+AGG | 0.589506 | 1.2:+2460133 | MS.gene27321:CDS |
| ACAACAACATGTATTGCCAA+AGG | 0.592557 | 1.2:+2460128 | MS.gene27321:CDS |
| TGATGAAGATATAGAAATTG+TGG | 0.597506 | 1.2:-2457660 | None:intergenic |
| TTCAGGCAAAATTACATCAG+CGG | 0.600431 | 1.2:+2457354 | MS.gene27321:CDS |
| TATGATGCATCATCATGCAA+TGG | 0.618243 | 1.2:+2457492 | MS.gene27321:CDS |
| GATGCATCATCATGCAATGG+AGG | 0.630369 | 1.2:+2457495 | MS.gene27321:CDS |
| ACAACACTTCTGTATGAATG+TGG | 0.643795 | 1.2:+2460604 | MS.gene27321:CDS |
| TAATAGGAAAGTGTGCATGT+TGG | 0.650786 | 1.2:+2458082 | MS.gene27321:CDS |
| ATGTGGACAGAAGATATGAA+AGG | 0.656271 | 1.2:+2456870 | None:intergenic |
| AAGATATAGAAATTGTGGTG+TGG | 0.664213 | 1.2:-2457655 | None:intergenic |
| AAAACTCTTACATCAAACCA+AGG | 0.678998 | 1.2:-2457597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTATTTATATTT+AGG | + | chr1.2:2459301-2459320 | MS.gene27321:intron | 0.0% |
| !!! | AAAAAATTATTTTTTGTTGT+GGG | + | chr1.2:2458414-2458433 | MS.gene27321:intron | 10.0% |
| !!! | ATAATTTTTAAAAATAAGTG+GGG | + | chr1.2:2458323-2458342 | MS.gene27321:intron | 10.0% |
| !!! | TAAAAAATTATTTTTTGTTG+TGG | + | chr1.2:2458413-2458432 | MS.gene27321:intron | 10.0% |
| !! | AAATTAGAATGAAAATGAAA+TGG | - | chr1.2:2457168-2457187 | None:intergenic | 15.0% |
| !! | AATAAATTTCATCTTACAAA+AGG | - | chr1.2:2460329-2460348 | None:intergenic | 15.0% |
| !! | ACAAGAAAAACAAATTAAAA+AGG | - | chr1.2:2457311-2457330 | None:intergenic | 15.0% |
| !! | ACTATCTATTAGATTAAATT+TGG | + | chr1.2:2459266-2459285 | MS.gene27321:intron | 15.0% |
| !! | ATTGTAACTATATACATATA+TGG | + | chr1.2:2459601-2459620 | MS.gene27321:intron | 15.0% |
| !!! | AAAAATTATTTTTTGTTGTG+GGG | + | chr1.2:2458415-2458434 | MS.gene27321:intron | 15.0% |
| !!! | AATTTAAATTCCTATTTTTC+AGG | - | chr1.2:2457027-2457046 | None:intergenic | 15.0% |
| !!! | ACATATCTTTTATTAACTAT+TGG | + | chr1.2:2458883-2458902 | MS.gene27321:intron | 15.0% |
| !!! | ATCATAATTTTCATATTCAT+GGG | + | chr1.2:2458553-2458572 | MS.gene27321:intron | 15.0% |
| !!! | ATTAACAATTTTAGTGATTT+TGG | + | chr1.2:2457449-2457468 | MS.gene27321:CDS | 15.0% |
| !!! | ATTTTTAAAAATTATTAGGC+CGG | - | chr1.2:2458318-2458337 | None:intergenic | 15.0% |
| !!! | CATATCTTTTATTAACTATT+GGG | + | chr1.2:2458884-2458903 | MS.gene27321:intron | 15.0% |
| !!! | TATCATAATTTTCATATTCA+TGG | + | chr1.2:2458552-2458571 | MS.gene27321:intron | 15.0% |
| !!! | TATTAATGTTATCTATGTTT+TGG | + | chr1.2:2458768-2458787 | MS.gene27321:intron | 15.0% |
| !! | AAAAGTTTAATTGTTGTCAT+TGG | + | chr1.2:2460575-2460594 | MS.gene27321:CDS | 20.0% |
| !! | AACCAAACAAGTTATATAAT+AGG | - | chr1.2:2460053-2460072 | None:intergenic | 20.0% |
| !! | AATAAAAGATATGTGTATTG+TGG | - | chr1.2:2458877-2458896 | None:intergenic | 20.0% |
| !! | AATGATAATTTAATGCATGA+TGG | - | chr1.2:2457570-2457589 | None:intergenic | 20.0% |
| !! | ACAAAAAATCAGTATTATGA+AGG | - | chr1.2:2458690-2458709 | None:intergenic | 20.0% |
| !! | ACACAAAATATGAAATCTAA+AGG | - | chr1.2:2457288-2457307 | None:intergenic | 20.0% |
| !! | ACAGATAGTATAAGAATAAA+TGG | + | chr1.2:2457813-2457832 | MS.gene27321:CDS | 20.0% |
| !! | ATATAATTCAGTGTAATCAT+AGG | + | chr1.2:2459168-2459187 | MS.gene27321:intron | 20.0% |
| !! | CAAAAAATCAGTATTATGAA+GGG | - | chr1.2:2458689-2458708 | None:intergenic | 20.0% |
| !! | CAAATCTATGTGTTTATTTA+AGG | - | chr1.2:2457061-2457080 | None:intergenic | 20.0% |
| !! | CAAATTTGTATCATAATAGA+AGG | - | chr1.2:2459386-2459405 | None:intergenic | 20.0% |
| !! | CACAAAATATGAAATCTAAA+GGG | - | chr1.2:2457287-2457306 | None:intergenic | 20.0% |
| !! | GCTTAACATAAAAGTTATTA+CGG | - | chr1.2:2460029-2460048 | None:intergenic | 20.0% |
| !! | TAAAACAAGCTTAAATACAT+GGG | + | chr1.2:2458348-2458367 | MS.gene27321:intron | 20.0% |
| !! | TGATTCCTAGATATAAAAAA+GGG | + | chr1.2:2460435-2460454 | MS.gene27321:intron | 20.0% |
| !! | TTAAAACAAGCTTAAATACA+TGG | + | chr1.2:2458347-2458366 | MS.gene27321:intron | 20.0% |
| !! | TTGATTCCTAGATATAAAAA+AGG | + | chr1.2:2460434-2460453 | MS.gene27321:intron | 20.0% |
| !! | TTTATGCATTAATCTATACA+TGG | + | chr1.2:2459860-2459879 | MS.gene27321:intron | 20.0% |
| !!! | AAATTTTACAGATGCTTAAA+AGG | - | chr1.2:2459925-2459944 | None:intergenic | 20.0% |
| !!! | AATTATCATTTTCATTACCT+TGG | + | chr1.2:2457580-2457599 | MS.gene27321:CDS | 20.0% |
| !!! | ATGAATAGTTCAATTTTTCA+TGG | + | chr1.2:2456988-2457007 | MS.gene27321:intron | 20.0% |
| !!! | ATTTTAGATGTTTCATATTC+TGG | - | chr1.2:2458116-2458135 | None:intergenic | 20.0% |
| !!! | GGTTTTTTAATTAGAATATG+AGG | + | chr1.2:2458369-2458388 | MS.gene27321:intron | 20.0% |
| !!! | TAGGAATTTAAATTTGTTTG+TGG | + | chr1.2:2457033-2457052 | MS.gene27321:intron | 20.0% |
| !!! | TATATAACTTGTTTGGTTTT+TGG | + | chr1.2:2460055-2460074 | MS.gene27321:intron | 20.0% |
| !!! | TATTTTGTCAAAAAACCTTA+TGG | - | chr1.2:2459502-2459521 | None:intergenic | 20.0% |
| !!! | TGACTAATTGACTATATTTT+CGG | + | chr1.2:2458639-2458658 | MS.gene27321:intron | 20.0% |
| !!! | TTTTGTTTATATTTGAGACA+GGG | - | chr1.2:2459072-2459091 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATATTTGAGAC+AGG | - | chr1.2:2459073-2459092 | None:intergenic | 20.0% |
| ! | AAAAATGATGTAGACTTTGA+TGG | + | chr1.2:2457426-2457445 | MS.gene27321:CDS | 25.0% |
| ! | AAAGATTGTGTACTAAACAA+GGG | - | chr1.2:2460492-2460511 | None:intergenic | 25.0% |
| ! | AATTTATCTACCATGTTACT+TGG | + | chr1.2:2459940-2459959 | MS.gene27321:intron | 25.0% |
| ! | AGTAATACGTTTATTTCCTT+AGG | - | chr1.2:2459431-2459450 | None:intergenic | 25.0% |
| ! | ATGAATTGTGAAACAGAAAT+GGG | + | chr1.2:2457930-2457949 | MS.gene27321:CDS | 25.0% |
| ! | ATTTATAAAAATAGCCGATC+GGG | - | chr1.2:2459672-2459691 | None:intergenic | 25.0% |
| ! | CACTTCATATAGTAATTACT+AGG | - | chr1.2:2457087-2457106 | None:intergenic | 25.0% |
| ! | CATTTATAAAAATAGCCGAT+CGG | - | chr1.2:2459673-2459692 | None:intergenic | 25.0% |
| ! | GAAAACCTATAATCTTAACT+AGG | + | chr1.2:2458030-2458049 | MS.gene27321:CDS | 25.0% |
| ! | GAATGAAAATGAAATGGAAA+AGG | - | chr1.2:2457162-2457181 | None:intergenic | 25.0% |
| ! | GAGTTTATTTCCTGAAAAAT+AGG | + | chr1.2:2457014-2457033 | MS.gene27321:intron | 25.0% |
| ! | TACAAGTCACAAGATAAAAA+TGG | - | chr1.2:2457218-2457237 | None:intergenic | 25.0% |
| ! | TACATATATGGTTACTCAAT+AGG | + | chr1.2:2459613-2459632 | MS.gene27321:intron | 25.0% |
| ! | TATGAATTGTGAAACAGAAA+TGG | + | chr1.2:2457929-2457948 | MS.gene27321:CDS | 25.0% |
| ! | TATTATCCACAAAAATTGCA+TGG | - | chr1.2:2458597-2458616 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTATCTGTGT+CGG | - | chr1.2:2459143-2459162 | None:intergenic | 25.0% |
| ! | TGATGAAGATATAGAAATTG+TGG | - | chr1.2:2457663-2457682 | None:intergenic | 25.0% |
| ! | TTAGTACCTTTAGATGATAT+TGG | + | chr1.2:2458801-2458820 | MS.gene27321:intron | 25.0% |
| ! | TTATATCTAGGAATCAAACT+CGG | - | chr1.2:2460431-2460450 | None:intergenic | 25.0% |
| !! | AAGATTCTTCAATTCTAAGA+AGG | + | chr1.2:2457748-2457767 | MS.gene27321:CDS | 25.0% |
| !! | ACTTATAGGATAGGATTTTT+GGG | - | chr1.2:2458828-2458847 | None:intergenic | 25.0% |
| !! | AGATTCTTCAATTCTAAGAA+GGG | + | chr1.2:2457749-2457768 | MS.gene27321:CDS | 25.0% |
| !! | ATAAATGTGAGCAATTTTGA+GGG | + | chr1.2:2459686-2459705 | MS.gene27321:intron | 25.0% |
| !! | ATCTATACATGGATTTTCTT+AGG | + | chr1.2:2459871-2459890 | MS.gene27321:intron | 25.0% |
| !! | ATGATAATGAGAAGAGATAT+TGG | + | chr1.2:2457904-2457923 | MS.gene27321:CDS | 25.0% |
| !! | ATTGACTATATTTTCGGATT+TGG | + | chr1.2:2458645-2458664 | MS.gene27321:intron | 25.0% |
| !! | ATTTCTTTAAAAGCCTTTGA+AGG | - | chr1.2:2460527-2460546 | None:intergenic | 25.0% |
| !! | TATAAATGTGAGCAATTTTG+AGG | + | chr1.2:2459685-2459704 | MS.gene27321:intron | 25.0% |
| !! | TTTCTTTAAAAGCCTTTGAA+GGG | - | chr1.2:2460526-2460545 | None:intergenic | 25.0% |
| !!! | ACAACTTTTAAGTGCATTTA+TGG | + | chr1.2:2458189-2458208 | MS.gene27321:intron | 25.0% |
| !!! | ATCTAAAGGTACTAAATTAG+AGG | - | chr1.2:2458796-2458815 | None:intergenic | 25.0% |
| !!! | ATGTTCTTGTTTTGTTTTGA+AGG | + | chr1.2:2460545-2460564 | MS.gene27321:intron | 25.0% |
| !!! | CACCTATTATATAACTTGTT+TGG | + | chr1.2:2460048-2460067 | MS.gene27321:intron | 25.0% |
| !!! | GTTTTTTATGTAAGAGTTAG+TGG | + | chr1.2:2457615-2457634 | MS.gene27321:CDS | 25.0% |
| !!! | TCTAAAGGTACTAAATTAGA+GGG | - | chr1.2:2458795-2458814 | None:intergenic | 25.0% |
| !!! | TGCTTAAAAGGTTTGTTAAA+TGG | - | chr1.2:2459913-2459932 | None:intergenic | 25.0% |
| AAAACTCTTACATCAAACCA+AGG | - | chr1.2:2457600-2457619 | None:intergenic | 30.0% | |
| AAGATATAGAAATTGTGGTG+TGG | - | chr1.2:2457658-2457677 | None:intergenic | 30.0% | |
| AAGGGAAGGATATATAGATA+TGG | + | chr1.2:2460147-2460166 | MS.gene27321:CDS | 30.0% | |
| AAGGTCAGAATCTATTAACA+AGG | - | chr1.2:2458957-2458976 | None:intergenic | 30.0% | |
| AATCTATTAACAAGGGACAT+TGG | - | chr1.2:2458949-2458968 | None:intergenic | 30.0% | |
| AATGTTCCATTTGGTCTATA+AGG | + | chr1.2:2458525-2458544 | MS.gene27321:intron | 30.0% | |
| AATTTGCGAAATGTTCCATT+TGG | + | chr1.2:2458516-2458535 | MS.gene27321:intron | 30.0% | |
| ACAATCAACGAAACAGTTAA+AGG | - | chr1.2:2457381-2457400 | None:intergenic | 30.0% | |
| ACTTGGAAATATGTTGTTGA+AGG | - | chr1.2:2459989-2460008 | None:intergenic | 30.0% | |
| AGCAACCATCAAATACATAT+TGG | + | chr1.2:2459717-2459736 | MS.gene27321:intron | 30.0% | |
| AGGTCAGAATCTATTAACAA+GGG | - | chr1.2:2458956-2458975 | None:intergenic | 30.0% | |
| AGTGTCCTAGTTAAGATTAT+AGG | - | chr1.2:2458038-2458057 | None:intergenic | 30.0% | |
| ATGAAATCTAAAGGGAAGAA+AGG | - | chr1.2:2457279-2457298 | None:intergenic | 30.0% | |
| ATGAGTTTGATGAAATCACA+GGG | + | chr1.2:2458219-2458238 | MS.gene27321:intron | 30.0% | |
| ATGTTCCATTTGGTCTATAA+GGG | + | chr1.2:2458526-2458545 | MS.gene27321:intron | 30.0% | |
| ATTGCAGGAAGAAACATAAT+AGG | + | chr1.2:2458066-2458085 | MS.gene27321:CDS | 30.0% | |
| CAAATTAAGTCCAAGTAACA+TGG | - | chr1.2:2459953-2459972 | None:intergenic | 30.0% | |
| CTAAAAGCAGATACTATGTT+AGG | - | chr1.2:2459789-2459808 | None:intergenic | 30.0% | |
| GAAAGATTGTGTACTAAACA+AGG | - | chr1.2:2460493-2460512 | None:intergenic | 30.0% | |
| GAAATTGAAGTTTATGTTGC+TGG | + | chr1.2:2457996-2458015 | MS.gene27321:CDS | 30.0% | |
| GACACAACATACAGAAAATA+AGG | - | chr1.2:2459014-2459033 | None:intergenic | 30.0% | |
| GAGAAAAGGTAGTTATAAGA+AGG | - | chr1.2:2459557-2459576 | None:intergenic | 30.0% | |
| GCAACATAAACTTCAATTTC+AGG | - | chr1.2:2457996-2458015 | None:intergenic | 30.0% | |
| GCAATCAAATTCTTAAACCA+AGG | - | chr1.2:2456898-2456917 | None:intergenic | 30.0% | |
| GGAAATAAACGTATTACTGA+AGG | + | chr1.2:2459433-2459452 | MS.gene27321:intron | 30.0% | |
| GGATATATAGATATGGAAGA+TGG | + | chr1.2:2460154-2460173 | MS.gene27321:CDS | 30.0% | |
| TATAGTTACAATTGCTGATG+TGG | - | chr1.2:2459593-2459612 | None:intergenic | 30.0% | |
| TATATCCCTTATAGACCAAA+TGG | - | chr1.2:2458534-2458553 | None:intergenic | 30.0% | |
| TATCTATATATCCTTCCCTT+TGG | - | chr1.2:2460147-2460166 | None:intergenic | 30.0% | |
| TATGAGTTTGATGAAATCAC+AGG | + | chr1.2:2458218-2458237 | MS.gene27321:intron | 30.0% | |
| TCAATTACTTATCTACCACT+AGG | + | chr1.2:2460366-2460385 | MS.gene27321:intron | 30.0% | |
| TCGAGTTTGTACAATATTTC+AGG | + | chr1.2:2457337-2457356 | MS.gene27321:CDS | 30.0% | |
| TGGACCTTAGACAAATAAAT+GGG | - | chr1.2:2459757-2459776 | None:intergenic | 30.0% | |
| TTGGACCTTAGACAAATAAA+TGG | - | chr1.2:2459758-2459777 | None:intergenic | 30.0% | |
| ! | AAAAGTGTATCAGGACTTAA+AGG | - | chr1.2:2457690-2457709 | None:intergenic | 30.0% |
| ! | AAGGAGTAGATTGAAAGTTT+TGG | - | chr1.2:2459367-2459386 | None:intergenic | 30.0% |
| ! | AGTGATTTTGGATATGAAGA+TGG | + | chr1.2:2457461-2457480 | MS.gene27321:CDS | 30.0% |
| ! | CACTTATAGGATAGGATTTT+TGG | - | chr1.2:2458829-2458848 | None:intergenic | 30.0% |
| ! | CCTTTGAAAAAACCACTATT+AGG | - | chr1.2:2457957-2457976 | None:intergenic | 30.0% |
| ! | CTTTTACCATGCAATTTTTG+TGG | + | chr1.2:2458588-2458607 | MS.gene27321:intron | 30.0% |
| ! | GTGATTTTGGATATGAAGAT+GGG | + | chr1.2:2457462-2457481 | MS.gene27321:CDS | 30.0% |
| ! | TAAATGTGAGCAATTTTGAG+GGG | + | chr1.2:2459687-2459706 | MS.gene27321:intron | 30.0% |
| ! | TTTACCTCTAAAAGTGTATC+AGG | - | chr1.2:2457699-2457718 | None:intergenic | 30.0% |
| !! | ACTATGTTAGGTATTGGATT+TGG | - | chr1.2:2459777-2459796 | None:intergenic | 30.0% |
| !! | GATACACTTTTAGAGGTAAA+TGG | + | chr1.2:2457699-2457718 | MS.gene27321:CDS | 30.0% |
| !! | TTAATGCATGATGGATCATA+AGG | - | chr1.2:2457561-2457580 | None:intergenic | 30.0% |
| !!! | AGTTGCCCTTTTTTATATCT+AGG | - | chr1.2:2460443-2460462 | None:intergenic | 30.0% |
| !!! | CCTAATAGTGGTTTTTTCAA+AGG | + | chr1.2:2457954-2457973 | MS.gene27321:CDS | 30.0% |
| !!! | TTGTTTGGTTTTTGGTTCAT+AGG | + | chr1.2:2460063-2460082 | MS.gene27321:intron | 30.0% |
| AACAGTCACACTTATAGGAT+AGG | - | chr1.2:2458837-2458856 | None:intergenic | 35.0% | |
| AAGAAAGAGAACTTGAGTGA+AGG | - | chr1.2:2457248-2457267 | None:intergenic | 35.0% | |
| ACAACAACATGTATTGCCAA+AGG | + | chr1.2:2460128-2460147 | MS.gene27321:CDS | 35.0% | |
| ACAACACTTCTGTATGAATG+TGG | + | chr1.2:2460604-2460623 | MS.gene27321:CDS | 35.0% | |
| ACCAGTACTTGTCCTTTAAT+GGG | - | chr1.2:2458981-2459000 | None:intergenic | 35.0% | |
| AGTGCATGTTTGGATTAACA+GGG | - | chr1.2:2458496-2458515 | None:intergenic | 35.0% | |
| ATAACCAATATCTCCCCTAA+TGG | + | chr1.2:2459522-2459541 | MS.gene27321:intron | 35.0% | |
| ATGAAGCACAAACATAGACA+CGG | + | chr1.2:2459106-2459125 | MS.gene27321:intron | 35.0% | |
| ATTGCATATATAAGCATGCG+TGG | + | chr1.2:2456913-2456932 | MS.gene27321:intron | 35.0% | |
| CAACAACATGTATTGCCAAA+GGG | + | chr1.2:2460129-2460148 | MS.gene27321:CDS | 35.0% | |
| CAGATGAATGTACAACTAGA+AGG | + | chr1.2:2459326-2459345 | MS.gene27321:intron | 35.0% | |
| CTACTTATCTGTGGAAAACT+TGG | + | chr1.2:2460461-2460480 | MS.gene27321:intron | 35.0% | |
| CTCTTTCTGTCTAAACCATA+AGG | + | chr1.2:2459484-2459503 | MS.gene27321:intron | 35.0% | |
| GATGTTTGTGATCATGATCA+TGG | + | chr1.2:2458143-2458162 | MS.gene27321:CDS | 35.0% | |
| GCAGATACTATGTTAGGTAT+TGG | - | chr1.2:2459783-2459802 | None:intergenic | 35.0% | |
| GTCAATATGCTTGAGAGAAA+AGG | - | chr1.2:2459571-2459590 | None:intergenic | 35.0% | |
| GTTGTTGAAGGACTAATACT+AGG | - | chr1.2:2459977-2459996 | None:intergenic | 35.0% | |
| TAGTGCATGTTTGGATTAAC+AGG | - | chr1.2:2458497-2458516 | None:intergenic | 35.0% | |
| TATAAGTGTGACTGTTGCAT+GGG | + | chr1.2:2458841-2458860 | MS.gene27321:intron | 35.0% | |
| TATGATGCATCATCATGCAA+TGG | + | chr1.2:2457492-2457511 | MS.gene27321:CDS | 35.0% | |
| TGAAACTACGAGTAGTTCTT+TGG | - | chr1.2:2460282-2460301 | None:intergenic | 35.0% | |
| TTCAGGCAAAATTACATCAG+CGG | + | chr1.2:2457354-2457373 | MS.gene27321:CDS | 35.0% | |
| TTCGCAAATTAGTGCATGTT+TGG | - | chr1.2:2458506-2458525 | None:intergenic | 35.0% | |
| TTGAGTGTGATAGTAACCTA+AGG | + | chr1.2:2459412-2459431 | MS.gene27321:intron | 35.0% | |
| TTGGGACCAATATCATCTAA+AGG | - | chr1.2:2458810-2458829 | None:intergenic | 35.0% | |
| TTGTAATGCTCTTCTTCTTC+TGG | - | chr1.2:2460112-2460131 | None:intergenic | 35.0% | |
| ! | AAGTCCTGATACACTTTTAG+AGG | + | chr1.2:2457692-2457711 | MS.gene27321:CDS | 35.0% |
| ! | AGCTTTTGCCAAAATCATGA+CGG | + | chr1.2:2458267-2458286 | MS.gene27321:intron | 35.0% |
| ! | ATTTTGGATATGAAGATGGG+AGG | + | chr1.2:2457465-2457484 | MS.gene27321:CDS | 35.0% |
| ! | CTTCTAGTTGTACATTCATC+TGG | - | chr1.2:2459328-2459347 | None:intergenic | 35.0% |
| ! | GTATTTGATGGTTGCTCAAT+AGG | - | chr1.2:2459713-2459732 | None:intergenic | 35.0% |
| ! | TAATAGGAAAGTGTGCATGT+TGG | + | chr1.2:2458082-2458101 | MS.gene27321:CDS | 35.0% |
| ! | TGTAATCATAGGTATCGTGT+TGG | + | chr1.2:2459179-2459198 | MS.gene27321:intron | 35.0% |
| ! | TGTTTCGTTGATTGTGAAAC+AGG | + | chr1.2:2457386-2457405 | MS.gene27321:CDS | 35.0% |
| ! | TTCGGATTTGGAATAAGATG+TGG | + | chr1.2:2458657-2458676 | MS.gene27321:intron | 35.0% |
| !! | ATCTTTGTAGGAGTTGGTAT+AGG | + | chr1.2:2460232-2460251 | MS.gene27321:intron | 35.0% |
| !! | TCTTTGTAGGAGTTGGTATA+GGG | + | chr1.2:2460233-2460252 | MS.gene27321:intron | 35.0% |
| AAAGAGAACTTGAGTGAAGG+TGG | - | chr1.2:2457245-2457264 | None:intergenic | 40.0% | |
| AAAGGGCAACTACTTATCTG+TGG | + | chr1.2:2460452-2460471 | MS.gene27321:intron | 40.0% | |
| AAATAAATGGGCCGGATAGA+GGG | - | chr1.2:2459745-2459764 | None:intergenic | 40.0% | |
| AACATGTATTGCCAAAGGGA+AGG | + | chr1.2:2460133-2460152 | MS.gene27321:CDS | 40.0% | |
| AAGGAGACACTTACCATTAG+GGG | - | chr1.2:2459538-2459557 | None:intergenic | 40.0% | |
| ACAGAAATGGGACCTAATAG+TGG | + | chr1.2:2457942-2457961 | MS.gene27321:CDS | 40.0% | |
| ACTACGAGTAGTTCTTTGGT+AGG | - | chr1.2:2460278-2460297 | None:intergenic | 40.0% | |
| AGAAGGAGACACTTACCATT+AGG | - | chr1.2:2459540-2459559 | None:intergenic | 40.0% | |
| ATTCTGACCTTCCCCATTAA+AGG | + | chr1.2:2458966-2458985 | MS.gene27321:intron | 40.0% | |
| CACCAGTACTTGTCCTTTAA+TGG | - | chr1.2:2458982-2459001 | None:intergenic | 40.0% | |
| CATGCAACAGTCACACTTAT+AGG | - | chr1.2:2458842-2458861 | None:intergenic | 40.0% | |
| CCAGTACTTGTCCTTTAATG+GGG | - | chr1.2:2458980-2458999 | None:intergenic | 40.0% | |
| CCTTAGACAAATAAATGGGC+CGG | - | chr1.2:2459753-2459772 | None:intergenic | 40.0% | |
| CTATAAGTGTGACTGTTGCA+TGG | + | chr1.2:2458840-2458859 | MS.gene27321:intron | 40.0% | |
| CTGATCAGGAGCAAAATTGA+GGG | - | chr1.2:2459640-2459659 | None:intergenic | 40.0% | |
| CTTACCATTAGGGGAGATAT+TGG | - | chr1.2:2459529-2459548 | None:intergenic | 40.0% | |
| GAACTACTCGTAGTTTCAAG+AGG | + | chr1.2:2460284-2460303 | MS.gene27321:intron | 40.0% | |
| GAAGGAGACACTTACCATTA+GGG | - | chr1.2:2459539-2459558 | None:intergenic | 40.0% | |
| GGGCACCAATATGTATTTGA+TGG | - | chr1.2:2459725-2459744 | None:intergenic | 40.0% | |
| TACTTGTCCTTTAATGGGGA+AGG | - | chr1.2:2458976-2458995 | None:intergenic | 40.0% | |
| TGATCAGGAGCAAAATTGAG+GGG | - | chr1.2:2459639-2459658 | None:intergenic | 40.0% | |
| TTCAATGCTGGAGTAAGAGT+TGG | + | chr1.2:2460190-2460209 | MS.gene27321:intron | 40.0% | |
| TTGTGACACTCATAAGCACT+TGG | - | chr1.2:2460006-2460025 | None:intergenic | 40.0% | |
| ! | TCATTTTCTGTGCCCTTCAA+AGG | + | chr1.2:2460511-2460530 | MS.gene27321:intron | 40.0% |
| ! | TGATCATGGACTTGTTTCAC+AGG | + | chr1.2:2458157-2458176 | MS.gene27321:CDS | 40.0% |
| !! | AAAGGACAAGTACTGGTGTT+GGG | + | chr1.2:2458984-2459003 | MS.gene27321:intron | 40.0% |
| !! | CTTTGTAGGAGTTGGTATAG+GGG | + | chr1.2:2460234-2460253 | MS.gene27321:intron | 40.0% |
| !! | GTAAGAGTTGGTGTTGGAAT+TGG | + | chr1.2:2460202-2460221 | MS.gene27321:intron | 40.0% |
| !! | TAAAGGACAAGTACTGGTGT+TGG | + | chr1.2:2458983-2459002 | MS.gene27321:intron | 40.0% |
| !! | TATGAAGCACTGATACTCCT+CGG | - | chr1.2:2459247-2459266 | None:intergenic | 40.0% |
| ACACAATGTGCACTACCTAG+TGG | - | chr1.2:2460384-2460403 | None:intergenic | 45.0% | |
| ATTGGACTCGGCATCTTTGT+AGG | + | chr1.2:2460220-2460239 | MS.gene27321:intron | 45.0% | |
| CAAATAAATGGGCCGGATAG+AGG | - | chr1.2:2459746-2459765 | None:intergenic | 45.0% | |
| CACTGTGATTACGTCAGACA+AGG | + | chr1.2:2458292-2458311 | MS.gene27321:intron | 45.0% | |
| CCCCATTAAAGGACAAGTAC+TGG | + | chr1.2:2458977-2458996 | MS.gene27321:intron | 45.0% | |
| CCGGCCCATTTATTTGTCTA+AGG | + | chr1.2:2459750-2459769 | MS.gene27321:intron | 45.0% | |
| CCTGATCAGGAGCAAAATTG+AGG | - | chr1.2:2459641-2459660 | None:intergenic | 45.0% | |
| CTACTCGTAGTTTCAAGAGG+AGG | + | chr1.2:2460287-2460306 | MS.gene27321:intron | 45.0% | |
| GAGCTATCATGGTTCAATGC+TGG | + | chr1.2:2460178-2460197 | MS.gene27321:intron | 45.0% | |
| GATGCATCATCATGCAATGG+AGG | + | chr1.2:2457495-2457514 | MS.gene27321:CDS | 45.0% | |
| GATTAGGCGTGTCCTAGTAT+CGG | - | chr1.2:2459225-2459244 | None:intergenic | 45.0% | |
| GCATGTTTGGATTAACAGGG+AGG | - | chr1.2:2458493-2458512 | None:intergenic | 45.0% | |
| TATATAAGCATGCGTGGCTG+TGG | + | chr1.2:2456919-2456938 | MS.gene27321:intron | 45.0% | |
| TGGAAGATGGTGAGCTATCA+TGG | + | chr1.2:2460167-2460186 | MS.gene27321:intron | 45.0% | |
| ! | ACAGTGTGCCGTCATGATTT+TGG | - | chr1.2:2458278-2458297 | None:intergenic | 45.0% |
| ! | ACATATTGGTGCCCTCTATC+CGG | + | chr1.2:2459731-2459750 | MS.gene27321:intron | 45.0% |
| ! | ATCAGGTTGTAACTCCCGAT+CGG | + | chr1.2:2459655-2459674 | MS.gene27321:intron | 45.0% |
| ! | CCTCAATTTTGCTCCTGATC+AGG | + | chr1.2:2459638-2459657 | MS.gene27321:intron | 45.0% |
| !! | AAGGACAAGTACTGGTGTTG+GGG | + | chr1.2:2458985-2459004 | MS.gene27321:intron | 45.0% |
| !! | GTTGGTGTTGGAATTGGACT+CGG | + | chr1.2:2460208-2460227 | MS.gene27321:intron | 45.0% |
| !!! | AATAATTTTTAAAAATAAGT+GGG | + | chr1.2:2458322-2458341 | MS.gene27321:intron | 5.0% |
| !!! | ACTTATTTTTAAAAATTATT+AGG | - | chr1.2:2458322-2458341 | None:intergenic | 5.0% |
| !!! | TAATAATTTTTAAAAATAAG+TGG | + | chr1.2:2458321-2458340 | MS.gene27321:intron | 5.0% |
| CTCGGCATCTTTGTAGGAGT+TGG | + | chr1.2:2460226-2460245 | MS.gene27321:intron | 50.0% | |
| GGACACTGCAGATCAATTGC+AGG | + | chr1.2:2458051-2458070 | MS.gene27321:CDS | 50.0% | |
| GTGATTACGTCAGACAAGGC+CGG | + | chr1.2:2458296-2458315 | MS.gene27321:intron | 50.0% | |
| TCGGGAGTTACAACCTGATC+AGG | - | chr1.2:2459654-2459673 | None:intergenic | 50.0% | |
| TTTGGTAGGAACGTGCCAAG+AGG | - | chr1.2:2460264-2460283 | None:intergenic | 50.0% | |
| ! | GCACTGATACTCCTCGGATT+AGG | - | chr1.2:2459241-2459260 | None:intergenic | 50.0% |
| !! | GCTGGAGTAAGAGTTGGTGT+TGG | + | chr1.2:2460196-2460215 | MS.gene27321:intron | 50.0% |
| AACAGGGAGGTCTGACGTCA+GGG | - | chr1.2:2458480-2458499 | None:intergenic | 55.0% | |
| ACTAGGACACGCCTAATCCG+AGG | + | chr1.2:2459227-2459246 | MS.gene27321:intron | 55.0% | |
| AGCATGCGTGGCTGTGGTAA+AGG | + | chr1.2:2456925-2456944 | MS.gene27321:intron | 55.0% | |
| AGTGTGACTGTTGCATGGGC+AGG | + | chr1.2:2458845-2458864 | MS.gene27321:intron | 55.0% | |
| TAACAGGGAGGTCTGACGTC+AGG | - | chr1.2:2458481-2458500 | None:intergenic | 55.0% | |
| TGGTATAGGGGTCAGCCTCT+TGG | + | chr1.2:2460246-2460265 | MS.gene27321:intron | 55.0% | |
| ! | TCCTAGTATCGGACACGCGT+CGG | - | chr1.2:2459214-2459233 | None:intergenic | 55.0% |
| !! | GACAAGTACTGGTGTTGGGG+AGG | + | chr1.2:2458988-2459007 | MS.gene27321:intron | 55.0% |
| !! | GTTTTGGCGGCCTTACCCTT+AGG | + | chr1.2:2458450-2458469 | MS.gene27321:intron | 55.0% |
| ACCGACGCGTGTCCGATACT+AGG | + | chr1.2:2459210-2459229 | MS.gene27321:intron | 60.0% | |
| TCAGGGTCGGCCTAAGGGTA+AGG | - | chr1.2:2458463-2458482 | None:intergenic | 60.0% | |
| TGACGTCAGGGTCGGCCTAA+GGG | - | chr1.2:2458468-2458487 | None:intergenic | 60.0% | |
| TGTTGTGGGGCCTAACGCGA+GGG | + | chr1.2:2458428-2458447 | MS.gene27321:intron | 60.0% | |
| TTGTTGTGGGGCCTAACGCG+AGG | + | chr1.2:2458427-2458446 | MS.gene27321:intron | 60.0% | |
| !! | GCCTAACGCGAGGGTTTTGG+CGG | + | chr1.2:2458437-2458456 | MS.gene27321:intron | 60.0% |
| CTGACGTCAGGGTCGGCCTA+AGG | - | chr1.2:2458469-2458488 | None:intergenic | 65.0% | |
| GCCGCCAAAACCCTCGCGTT+AGG | - | chr1.2:2458441-2458460 | None:intergenic | 65.0% | |
| GGGAGGTCTGACGTCAGGGT+CGG | - | chr1.2:2458476-2458495 | None:intergenic | 65.0% | |
| ! | GGGGCCTAACGCGAGGGTTT+TGG | + | chr1.2:2458434-2458453 | MS.gene27321:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 2456885 | 2460634 | 2456885 | ID=MS.gene27321 |
| chr1.2 | mRNA | 2456885 | 2460634 | 2456885 | ID=MS.gene27321.t1;Parent=MS.gene27321 |
| chr1.2 | exon | 2456885 | 2456891 | 2456885 | ID=MS.gene27321.t1.exon1;Parent=MS.gene27321.t1 |
| chr1.2 | CDS | 2456885 | 2456891 | 2456885 | ID=cds.MS.gene27321.t1;Parent=MS.gene27321.t1 |
| chr1.2 | exon | 2457292 | 2458178 | 2457292 | ID=MS.gene27321.t1.exon2;Parent=MS.gene27321.t1 |
| chr1.2 | CDS | 2457292 | 2458178 | 2457292 | ID=cds.MS.gene27321.t1;Parent=MS.gene27321.t1 |
| chr1.2 | exon | 2460085 | 2460175 | 2460085 | ID=MS.gene27321.t1.exon3;Parent=MS.gene27321.t1 |
| chr1.2 | CDS | 2460085 | 2460175 | 2460085 | ID=cds.MS.gene27321.t1;Parent=MS.gene27321.t1 |
| chr1.2 | exon | 2460567 | 2460634 | 2460567 | ID=MS.gene27321.t1.exon4;Parent=MS.gene27321.t1 |
| chr1.2 | CDS | 2460567 | 2460634 | 2460567 | ID=cds.MS.gene27321.t1;Parent=MS.gene27321.t1 |
| Gene Sequence |
| Protein sequence |
