Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053301.t1 | XP_013466092.1 | 93.8 | 276 | 16 | 1 | 55 | 330 | 18 | 292 | 3.30E-148 | 534.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053301.t1 | Q8GUH2 | 35.5 | 276 | 148 | 12 | 78 | 330 | 14 | 282 | 7.3e-27 | 122.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053301.t1 | A0A072VEU8 | 93.8 | 276 | 16 | 1 | 55 | 330 | 23 | 297 | 2.4e-148 | 534.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053301 | MS.gene070491 | 0.801355 | 9.36E-49 | -1.69E-46 |
| MS.gene053301 | MS.gene073452 | 0.807086 | 6.00E-50 | -1.69E-46 |
| MS.gene053301 | MS.gene24288 | 0.892123 | 2.12E-74 | -1.69E-46 |
| MS.gene053301 | MS.gene26956 | 0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene053301 | MS.gene27321 | 0.945658 | 2.02E-104 | -1.69E-46 |
| MS.gene053301 | MS.gene37910 | 0.808905 | 2.46E-50 | -1.69E-46 |
| MS.gene053301 | MS.gene44430 | 0.808793 | 2.60E-50 | -1.69E-46 |
| MS.gene053301 | MS.gene45619 | 0.808675 | 2.76E-50 | -1.69E-46 |
| MS.gene053301 | MS.gene60166 | 0.811124 | 8.19E-51 | -1.69E-46 |
| MS.gene053301 | MS.gene60167 | 0.802522 | 5.39E-49 | -1.69E-46 |
| MS.gene053301 | MS.gene64029 | 0.820105 | 8.17E-53 | -1.69E-46 |
| MS.gene053301 | MS.gene64032 | 0.851685 | 7.56E-61 | -1.69E-46 |
| MS.gene053301 | MS.gene81602 | 0.800473 | 1.42E-48 | -1.69E-46 |
| MS.gene053301 | MS.gene89675 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene053301 | MS.gene90950 | 0.813681 | 2.26E-51 | -1.69E-46 |
| MS.gene053301 | MS.gene99802 | 0.811433 | 7.02E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053301.t1 | MTR_1g022190 | 93.841 | 276 | 16 | 1 | 55 | 330 | 18 | 292 | 0.0 | 539 |
| MS.gene053301.t1 | MTR_1g022190 | 93.841 | 276 | 16 | 1 | 55 | 330 | 23 | 297 | 0.0 | 537 |
| MS.gene053301.t1 | MTR_1g022190 | 94.382 | 267 | 15 | 0 | 64 | 330 | 1 | 267 | 0.0 | 530 |
| MS.gene053301.t1 | MTR_1g022190 | 94.694 | 245 | 12 | 1 | 55 | 299 | 18 | 261 | 1.30e-170 | 475 |
| MS.gene053301.t1 | MTR_4g070020 | 42.069 | 290 | 142 | 9 | 76 | 348 | 8 | 288 | 1.50e-67 | 215 |
| MS.gene053301.t1 | MTR_4g070020 | 47.321 | 224 | 101 | 5 | 76 | 286 | 8 | 227 | 4.25e-63 | 201 |
| MS.gene053301.t1 | MTR_8g028630 | 34.201 | 269 | 154 | 10 | 100 | 348 | 15 | 280 | 3.32e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053301.t1 | AT1G75180 | 49.609 | 256 | 106 | 7 | 111 | 348 | 42 | 292 | 4.47e-71 | 224 |
| MS.gene053301.t1 | AT1G75180 | 49.609 | 256 | 106 | 7 | 111 | 348 | 42 | 292 | 4.47e-71 | 224 |
| MS.gene053301.t1 | AT1G19400 | 47.619 | 252 | 111 | 7 | 82 | 321 | 11 | 253 | 2.22e-70 | 222 |
| MS.gene053301.t1 | AT1G19400 | 47.619 | 252 | 111 | 7 | 82 | 321 | 11 | 253 | 2.22e-70 | 222 |
| MS.gene053301.t1 | AT1G19400 | 47.619 | 252 | 111 | 7 | 82 | 321 | 11 | 253 | 2.22e-70 | 222 |
| MS.gene053301.t1 | AT1G19400 | 50.220 | 227 | 95 | 5 | 74 | 289 | 7 | 226 | 1.47e-69 | 218 |
| MS.gene053301.t1 | AT1G75180 | 55.263 | 190 | 70 | 4 | 111 | 286 | 42 | 230 | 3.57e-63 | 201 |
| MS.gene053301.t1 | AT1G75180 | 54.737 | 190 | 71 | 3 | 111 | 286 | 42 | 230 | 3.19e-62 | 200 |
| MS.gene053301.t1 | AT1G01500 | 34.944 | 269 | 143 | 12 | 106 | 348 | 42 | 304 | 5.63e-33 | 125 |
Find 39 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAGATGTTTCATATTC+TGG | 0.154223 | 1.4:-2193519 | None:intergenic |
| TTGTAATGCTCTTCTTCTTC+TGG | 0.227081 | 1.4:-2195514 | None:intergenic |
| TCGAGTTTGTACAATATTTC+AGG | 0.240366 | 1.4:+2192743 | MS.gene053301:CDS |
| AAAAGTGTATCAGGACTTAA+AGG | 0.253465 | 1.4:-2193093 | None:intergenic |
| ACAATCAACGAAACAGTTAA+AGG | 0.256351 | 1.4:-2192784 | None:intergenic |
| GCAACATAAACTTCAATTTC+AGG | 0.260900 | 1.4:-2193399 | None:intergenic |
| AGTGTCCTAGTTAAGATTAT+AGG | 0.277513 | 1.4:-2193441 | None:intergenic |
| ACAGATAGTATAAGAATAAA+TGG | 0.288585 | 1.4:+2193219 | MS.gene053301:CDS |
| ATGATAATGAGAAGAGATAT+TGG | 0.323687 | 1.4:+2193310 | MS.gene053301:CDS |
| AAAAGTTTAATTGTTGTCAT+TGG | 0.330187 | 1.4:+2195983 | MS.gene053301:CDS |
| TGTTTCGTTGATTGTGAAAC+AGG | 0.345089 | 1.4:+2192792 | MS.gene053301:CDS |
| ATTGCAGGAAGAAACATAAT+AGG | 0.362814 | 1.4:+2193472 | MS.gene053301:CDS |
| GAAATTGAAGTTTATGTTGC+TGG | 0.381875 | 1.4:+2193402 | MS.gene053301:CDS |
| TATGAATTGTGAAACAGAAA+TGG | 0.385595 | 1.4:+2193335 | MS.gene053301:CDS |
| TTTACCTCTAAAAGTGTATC+AGG | 0.386768 | 1.4:-2193102 | None:intergenic |
| AAGATTCTTCAATTCTAAGA+AGG | 0.437779 | 1.4:+2193154 | MS.gene053301:CDS |
| GGACACTGCAGATCAATTGC+AGG | 0.447539 | 1.4:+2193457 | MS.gene053301:CDS |
| TTAATGCATGATGGATCATA+AGG | 0.452740 | 1.4:-2192964 | None:intergenic |
| AAGGGAAGGATATATAGATA+TGG | 0.456712 | 1.4:+2195552 | MS.gene053301:CDS |
| ATGAATTGTGAAACAGAAAT+GGG | 0.487805 | 1.4:+2193336 | MS.gene053301:CDS |
| GATGTTTGTGATCATGATCA+TGG | 0.514929 | 1.4:+2193549 | MS.gene053301:CDS |
| AATGATAATTTAATGCATGA+TGG | 0.535072 | 1.4:-2192973 | None:intergenic |
| ACAGAAATGGGACCTAATAG+TGG | 0.538208 | 1.4:+2193348 | MS.gene053301:CDS |
| CAACAACATGTATTGCGAAA+GGG | 0.540291 | 1.4:+2195534 | MS.gene053301:CDS |
| TGATCATGGACTTGTTTCAC+AGG | 0.556098 | 1.4:+2193563 | MS.gene053301:CDS |
| GGATATATAGATATGGAAGA+TGG | 0.561870 | 1.4:+2195559 | MS.gene053301:CDS |
| AGATTCTTCAATTCTAAGAA+GGG | 0.575943 | 1.4:+2193155 | MS.gene053301:CDS |
| ACAACAACATGTATTGCGAA+AGG | 0.581150 | 1.4:+2195533 | MS.gene053301:CDS |
| GAAAACCTATAATCTTAACT+AGG | 0.581947 | 1.4:+2193436 | MS.gene053301:CDS |
| TGATGAAGATATAGAAATTG+TGG | 0.597506 | 1.4:-2193066 | None:intergenic |
| TTCAGGCAAAATTACATCAG+CGG | 0.600431 | 1.4:+2192760 | MS.gene053301:CDS |
| TATGATGCATCATCATGCAA+TGG | 0.618243 | 1.4:+2192898 | MS.gene053301:CDS |
| GATGCATCATCATGCAATGG+AGG | 0.630369 | 1.4:+2192901 | MS.gene053301:CDS |
| ACAACACTTCTGTATGAATG+TGG | 0.643795 | 1.4:+2196012 | MS.gene053301:CDS |
| TAATAGGAAAGTGTGCATGT+TGG | 0.650786 | 1.4:+2193488 | MS.gene053301:CDS |
| ATGTGGACAGAAGATATGAA+AGG | 0.656271 | 1.4:+2192276 | None:intergenic |
| AAGATATAGAAATTGTGGTG+TGG | 0.664213 | 1.4:-2193061 | None:intergenic |
| AACATGTATTGCGAAAGGGA+AGG | 0.668520 | 1.4:+2195538 | MS.gene053301:CDS |
| AAAACTCTTACATCAAACCA+AGG | 0.678998 | 1.4:-2193003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTATTTATATTT+AGG | + | chr1.4:2194706-2194725 | MS.gene053301:intron | 0.0% |
| !!! | AAAAAATTATTTTTTGTTGT+GGG | + | chr1.4:2193821-2193840 | MS.gene053301:intron | 10.0% |
| !!! | ATAATTTTTAAAAATAAGTG+GGG | + | chr1.4:2193729-2193748 | MS.gene053301:intron | 10.0% |
| !!! | TAAAAAATTATTTTTTGTTG+TGG | + | chr1.4:2193820-2193839 | MS.gene053301:intron | 10.0% |
| !! | AAATTAGAATGAAAATGAAA+TGG | - | chr1.4:2192574-2192593 | None:intergenic | 15.0% |
| !! | AATAAATTTCATCTTACAAA+AGG | - | chr1.4:2195734-2195753 | None:intergenic | 15.0% |
| !! | AATTATATTATTATCTGTGT+CGG | - | chr1.4:2194561-2194580 | None:intergenic | 15.0% |
| !! | AATTTAAATTCCTATATTTC+AGG | - | chr1.4:2192433-2192452 | None:intergenic | 15.0% |
| !! | ACAAGAAAAACAAATTAAAA+AGG | - | chr1.4:2192717-2192736 | None:intergenic | 15.0% |
| !! | ACTATCTATTAGATTAAATT+TGG | + | chr1.4:2194671-2194690 | MS.gene053301:intron | 15.0% |
| !! | ATTGTAACTATATACATATA+TGG | + | chr1.4:2195006-2195025 | MS.gene053301:intron | 15.0% |
| !! | TTTATGCATTAATATATACA+TGG | + | chr1.4:2195265-2195284 | MS.gene053301:intron | 15.0% |
| !!! | AAAAATTATTTTTTGTTGTG+GGG | + | chr1.4:2193822-2193841 | MS.gene053301:intron | 15.0% |
| !!! | ACATATCTTTTATTAACTAT+TGG | + | chr1.4:2194290-2194309 | MS.gene053301:intron | 15.0% |
| !!! | ATCATAATTTTCATATTCAT+GGG | + | chr1.4:2193960-2193979 | MS.gene053301:intron | 15.0% |
| !!! | ATTAACAATTTTAGTGATTT+TGG | + | chr1.4:2192855-2192874 | MS.gene053301:CDS | 15.0% |
| !!! | ATTTTTAAAAATTATTAGGC+CGG | - | chr1.4:2193724-2193743 | None:intergenic | 15.0% |
| !!! | CATATCTTTTATTAACTATT+GGG | + | chr1.4:2194291-2194310 | MS.gene053301:intron | 15.0% |
| !!! | GTTTTTTTAATTAGAATATG+AGG | + | chr1.4:2193776-2193795 | MS.gene053301:intron | 15.0% |
| !!! | TATCATAATTTTCATATTCA+TGG | + | chr1.4:2193959-2193978 | MS.gene053301:intron | 15.0% |
| !!! | TATTAATGTTATCTATGTTT+TGG | + | chr1.4:2194175-2194194 | MS.gene053301:intron | 15.0% |
| !! | AAAAGTTTAATTGTTGTCAT+TGG | + | chr1.4:2195983-2196002 | MS.gene053301:CDS | 20.0% |
| !! | AACCAAACAAGTTATATAAT+AGG | - | chr1.4:2195458-2195477 | None:intergenic | 20.0% |
| !! | AATAAAAGATATGTGTATTG+TGG | - | chr1.4:2194284-2194303 | None:intergenic | 20.0% |
| !! | AATGATAATTTAATGCATGA+TGG | - | chr1.4:2192976-2192995 | None:intergenic | 20.0% |
| !! | ACAAAAAATCAGTATTATCA+AGG | - | chr1.4:2194097-2194116 | None:intergenic | 20.0% |
| !! | ACACAAAATATGAAATCTAA+AGG | - | chr1.4:2192694-2192713 | None:intergenic | 20.0% |
| !! | ACAGATAGTATAAGAATAAA+TGG | + | chr1.4:2193219-2193238 | MS.gene053301:CDS | 20.0% |
| !! | ATATAATTCAGTGTAATCAT+AGG | + | chr1.4:2194573-2194592 | MS.gene053301:intron | 20.0% |
| !! | CAAAAAATCAGTATTATCAA+GGG | - | chr1.4:2194096-2194115 | None:intergenic | 20.0% |
| !! | CAAATCTATGTGTTTATTTA+AGG | - | chr1.4:2192467-2192486 | None:intergenic | 20.0% |
| !! | CAAATTTGTATCATAATAGA+AGG | - | chr1.4:2194791-2194810 | None:intergenic | 20.0% |
| !! | CACAAAATATGAAATCTAAA+GGG | - | chr1.4:2192693-2192712 | None:intergenic | 20.0% |
| !! | GCTTAACATAAAAGTTATTA+CGG | - | chr1.4:2195434-2195453 | None:intergenic | 20.0% |
| !! | TAAAACAAGCTTAAATACAT+GGG | + | chr1.4:2193754-2193773 | MS.gene053301:intron | 20.0% |
| !! | TGATTCCTAGATATAAAAAA+GGG | + | chr1.4:2195843-2195862 | MS.gene053301:intron | 20.0% |
| !! | TTAAAACAAGCTTAAATACA+TGG | + | chr1.4:2193753-2193772 | MS.gene053301:intron | 20.0% |
| !! | TTGATTCCTAGATATAAAAA+AGG | + | chr1.4:2195842-2195861 | MS.gene053301:intron | 20.0% |
| !!! | AAATTTTACAGATGCTTAAA+AGG | - | chr1.4:2195330-2195349 | None:intergenic | 20.0% |
| !!! | AATTATCATTTTCATTACCT+TGG | + | chr1.4:2192986-2193005 | MS.gene053301:CDS | 20.0% |
| !!! | ATATATACATGGATTTTCTT+AGG | + | chr1.4:2195276-2195295 | MS.gene053301:intron | 20.0% |
| !!! | ATGAATAGTTCAATTTTTCA+TGG | + | chr1.4:2192394-2192413 | MS.gene053301:intron | 20.0% |
| !!! | TAGGAATTTAAATTTGTTTG+TGG | + | chr1.4:2192439-2192458 | MS.gene053301:intron | 20.0% |
| !!! | TATATAACTTGTTTGGTTTT+TGG | + | chr1.4:2195460-2195479 | MS.gene053301:intron | 20.0% |
| !!! | TATTTTGTCAAAAAACCTTA+TGG | - | chr1.4:2194907-2194926 | None:intergenic | 20.0% |
| !!! | TGACTAATTGACTATATTTT+CGG | + | chr1.4:2194046-2194065 | MS.gene053301:intron | 20.0% |
| !!! | TTTTGTTTATATTTGAGACA+GGG | - | chr1.4:2194479-2194498 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATATTTGAGAC+AGG | - | chr1.4:2194480-2194499 | None:intergenic | 20.0% |
| ! | AAAAATGATGTAGACTTTGA+TGG | + | chr1.4:2192832-2192851 | MS.gene053301:CDS | 25.0% |
| ! | AAAGATTGTGTACTAAACAA+GGG | - | chr1.4:2195900-2195919 | None:intergenic | 25.0% |
| ! | AATTTATCTACCATGTTACT+TGG | + | chr1.4:2195345-2195364 | MS.gene053301:intron | 25.0% |
| ! | AGTAATACGTTTATTTCCTT+AGG | - | chr1.4:2194836-2194855 | None:intergenic | 25.0% |
| ! | ATGAATTGTGAAACAGAAAT+GGG | + | chr1.4:2193336-2193355 | MS.gene053301:CDS | 25.0% |
| ! | ATTTATAAAAATAGCCGATC+GGG | - | chr1.4:2195077-2195096 | None:intergenic | 25.0% |
| ! | ATTTCAGATGTTTCATATTC+TGG | - | chr1.4:2193522-2193541 | None:intergenic | 25.0% |
| ! | CACTTCATATAGTAATTACT+AGG | - | chr1.4:2192493-2192512 | None:intergenic | 25.0% |
| ! | CATTTATAAAAATAGCCGAT+CGG | - | chr1.4:2195078-2195097 | None:intergenic | 25.0% |
| ! | GAAAACCTATAATCTTAACT+AGG | + | chr1.4:2193436-2193455 | MS.gene053301:CDS | 25.0% |
| ! | GAATGAAAATGAAATGGAAA+AGG | - | chr1.4:2192568-2192587 | None:intergenic | 25.0% |
| ! | GAGTTTATTTCCTGAAATAT+AGG | + | chr1.4:2192420-2192439 | MS.gene053301:intron | 25.0% |
| ! | TACAAGTCACAAGATAAAAA+TGG | - | chr1.4:2192624-2192643 | None:intergenic | 25.0% |
| ! | TACATATATGGTTACTCAAT+AGG | + | chr1.4:2195018-2195037 | MS.gene053301:intron | 25.0% |
| ! | TATGAATTGTGAAACAGAAA+TGG | + | chr1.4:2193335-2193354 | MS.gene053301:CDS | 25.0% |
| ! | TATTATCCACAAAAATTGCA+TGG | - | chr1.4:2194004-2194023 | None:intergenic | 25.0% |
| ! | TGATGAAGATATAGAAATTG+TGG | - | chr1.4:2193069-2193088 | None:intergenic | 25.0% |
| ! | TTAGTACCTTTAGATGATAT+TGG | + | chr1.4:2194208-2194227 | MS.gene053301:intron | 25.0% |
| ! | TTATATCTAGGAATCAAACT+CGG | - | chr1.4:2195839-2195858 | None:intergenic | 25.0% |
| !! | AAGATTCTTCAATTCTAAGA+AGG | + | chr1.4:2193154-2193173 | MS.gene053301:CDS | 25.0% |
| !! | ACTTATAGGATAGGATTTTT+GGG | - | chr1.4:2194235-2194254 | None:intergenic | 25.0% |
| !! | AGATTCTTCAATTCTAAGAA+GGG | + | chr1.4:2193155-2193174 | MS.gene053301:CDS | 25.0% |
| !! | ATAAATGTGAGCAATTTTGA+GGG | + | chr1.4:2195091-2195110 | MS.gene053301:intron | 25.0% |
| !! | ATGATAATGAGAAGAGATAT+TGG | + | chr1.4:2193310-2193329 | MS.gene053301:CDS | 25.0% |
| !! | ATTGACTATATTTTCGGATT+TGG | + | chr1.4:2194052-2194071 | MS.gene053301:intron | 25.0% |
| !! | ATTTCTTTAAAAGCCTTTGA+AGG | - | chr1.4:2195935-2195954 | None:intergenic | 25.0% |
| !! | TATAAATGTGAGCAATTTTG+AGG | + | chr1.4:2195090-2195109 | MS.gene053301:intron | 25.0% |
| !! | TTTCTTTAAAAGCCTTTGAA+GGG | - | chr1.4:2195934-2195953 | None:intergenic | 25.0% |
| !!! | ACAACTTTTAAGTGCATTTA+TGG | + | chr1.4:2193595-2193614 | MS.gene053301:intron | 25.0% |
| !!! | ATCTAAAGGTACTAAATTAG+AGG | - | chr1.4:2194203-2194222 | None:intergenic | 25.0% |
| !!! | ATGTTCTTGTTTTGTTTTGA+AGG | + | chr1.4:2195953-2195972 | MS.gene053301:intron | 25.0% |
| !!! | CACCTATTATATAACTTGTT+TGG | + | chr1.4:2195453-2195472 | MS.gene053301:intron | 25.0% |
| !!! | GTTTTTTATGTAAGAGTTAG+TGG | + | chr1.4:2193021-2193040 | MS.gene053301:CDS | 25.0% |
| !!! | TCTAAAGGTACTAAATTAGA+GGG | - | chr1.4:2194202-2194221 | None:intergenic | 25.0% |
| !!! | TGCTTAAAAGGTTTGTTAAA+TGG | - | chr1.4:2195318-2195337 | None:intergenic | 25.0% |
| AAAACTCTTACATCAAACCA+AGG | - | chr1.4:2193006-2193025 | None:intergenic | 30.0% | |
| AAGATATAGAAATTGTGGTG+TGG | - | chr1.4:2193064-2193083 | None:intergenic | 30.0% | |
| AAGGGAAGGATATATAGATA+TGG | + | chr1.4:2195552-2195571 | MS.gene053301:CDS | 30.0% | |
| AAGGTCAGAATCTATTAACA+AGG | - | chr1.4:2194364-2194383 | None:intergenic | 30.0% | |
| AATCTATTAACAAGGGACAT+TGG | - | chr1.4:2194356-2194375 | None:intergenic | 30.0% | |
| AATGTTCCATTTGGTCTATA+AGG | + | chr1.4:2193932-2193951 | MS.gene053301:intron | 30.0% | |
| AATTTGCGAAATGTTCCATT+TGG | + | chr1.4:2193923-2193942 | MS.gene053301:intron | 30.0% | |
| ACAATCAACGAAACAGTTAA+AGG | - | chr1.4:2192787-2192806 | None:intergenic | 30.0% | |
| ACTTGGAAATATGTTGTTGA+AGG | - | chr1.4:2195394-2195413 | None:intergenic | 30.0% | |
| AGCAACCATCAAATACATAT+TGG | + | chr1.4:2195122-2195141 | MS.gene053301:intron | 30.0% | |
| AGGTCAGAATCTATTAACAA+GGG | - | chr1.4:2194363-2194382 | None:intergenic | 30.0% | |
| AGTGTCCTAGTTAAGATTAT+AGG | - | chr1.4:2193444-2193463 | None:intergenic | 30.0% | |
| ATGAAATCTAAAGGGAAGAA+AGG | - | chr1.4:2192685-2192704 | None:intergenic | 30.0% | |
| ATGAGTTTGATGAAATCACA+GGG | + | chr1.4:2193625-2193644 | MS.gene053301:intron | 30.0% | |
| ATGTTCCATTTGGTCTATAA+GGG | + | chr1.4:2193933-2193952 | MS.gene053301:intron | 30.0% | |
| ATTGCAGGAAGAAACATAAT+AGG | + | chr1.4:2193472-2193491 | MS.gene053301:CDS | 30.0% | |
| CAAATTAAGTCCAAGTAACA+TGG | - | chr1.4:2195358-2195377 | None:intergenic | 30.0% | |
| CTAAAAGCAGATACTATGTT+AGG | - | chr1.4:2195194-2195213 | None:intergenic | 30.0% | |
| GAAAGATTGTGTACTAAACA+AGG | - | chr1.4:2195901-2195920 | None:intergenic | 30.0% | |
| GAAATTGAAGTTTATGTTGC+TGG | + | chr1.4:2193402-2193421 | MS.gene053301:CDS | 30.0% | |
| GACACAACATACAGAAAATA+AGG | - | chr1.4:2194421-2194440 | None:intergenic | 30.0% | |
| GAGAAAAGGTAGTTATAAGA+AGG | - | chr1.4:2194962-2194981 | None:intergenic | 30.0% | |
| GCAACATAAACTTCAATTTC+AGG | - | chr1.4:2193402-2193421 | None:intergenic | 30.0% | |
| GCAATCAAATTCTTAAACCA+AGG | - | chr1.4:2192304-2192323 | None:intergenic | 30.0% | |
| GGAAATAAACGTATTACTGA+AGG | + | chr1.4:2194838-2194857 | MS.gene053301:intron | 30.0% | |
| GGATATATAGATATGGAAGA+TGG | + | chr1.4:2195559-2195578 | MS.gene053301:CDS | 30.0% | |
| TATAGTTACAATTGCTGATG+TGG | - | chr1.4:2194998-2195017 | None:intergenic | 30.0% | |
| TATATCCCTTATAGACCAAA+TGG | - | chr1.4:2193941-2193960 | None:intergenic | 30.0% | |
| TATGAGTTTGATGAAATCAC+AGG | + | chr1.4:2193624-2193643 | MS.gene053301:intron | 30.0% | |
| TCAATTACTTATCTACCACT+AGG | + | chr1.4:2195774-2195793 | MS.gene053301:intron | 30.0% | |
| TCGAGTTTGTACAATATTTC+AGG | + | chr1.4:2192743-2192762 | MS.gene053301:CDS | 30.0% | |
| TGGACCTTAGACAAATAAAT+GGG | - | chr1.4:2195162-2195181 | None:intergenic | 30.0% | |
| TTGGACCTTAGACAAATAAA+TGG | - | chr1.4:2195163-2195182 | None:intergenic | 30.0% | |
| ! | AAAAGTGTATCAGGACTTAA+AGG | - | chr1.4:2193096-2193115 | None:intergenic | 30.0% |
| ! | AAGGAGTAGATTGAAAGTTT+TGG | - | chr1.4:2194772-2194791 | None:intergenic | 30.0% |
| ! | AGTGATTTTGGATATGAAGA+TGG | + | chr1.4:2192867-2192886 | MS.gene053301:CDS | 30.0% |
| ! | CACTTATAGGATAGGATTTT+TGG | - | chr1.4:2194236-2194255 | None:intergenic | 30.0% |
| ! | CCTTTGAAAAAACCACTATT+AGG | - | chr1.4:2193363-2193382 | None:intergenic | 30.0% |
| ! | CTTTTACCATGCAATTTTTG+TGG | + | chr1.4:2193995-2194014 | MS.gene053301:intron | 30.0% |
| ! | GTGATTTTGGATATGAAGAT+GGG | + | chr1.4:2192868-2192887 | MS.gene053301:CDS | 30.0% |
| ! | TAAATGTGAGCAATTTTGAG+GGG | + | chr1.4:2195092-2195111 | MS.gene053301:intron | 30.0% |
| ! | TTTACCTCTAAAAGTGTATC+AGG | - | chr1.4:2193105-2193124 | None:intergenic | 30.0% |
| !! | ACTATGTTAGGTATTGGATT+TGG | - | chr1.4:2195182-2195201 | None:intergenic | 30.0% |
| !! | GATACACTTTTAGAGGTAAA+TGG | + | chr1.4:2193105-2193124 | MS.gene053301:CDS | 30.0% |
| !! | TTAATGCATGATGGATCATA+AGG | - | chr1.4:2192967-2192986 | None:intergenic | 30.0% |
| !!! | AGTTGCCCTTTTTTATATCT+AGG | - | chr1.4:2195851-2195870 | None:intergenic | 30.0% |
| !!! | CCTAATAGTGGTTTTTTCAA+AGG | + | chr1.4:2193360-2193379 | MS.gene053301:CDS | 30.0% |
| !!! | TTGTTTGGTTTTTGGTTCAT+AGG | + | chr1.4:2195468-2195487 | MS.gene053301:intron | 30.0% |
| AACAGTCACACTTATAGGAT+AGG | - | chr1.4:2194244-2194263 | None:intergenic | 35.0% | |
| AAGAAAGAGAACTTGAGTGA+AGG | - | chr1.4:2192654-2192673 | None:intergenic | 35.0% | |
| ACAACAACATGTATTGCGAA+AGG | + | chr1.4:2195533-2195552 | MS.gene053301:CDS | 35.0% | |
| ACAACACTTCTGTATGAATG+TGG | + | chr1.4:2196012-2196031 | MS.gene053301:CDS | 35.0% | |
| ACCAGTACTTGTCCTTTAAT+GGG | - | chr1.4:2194388-2194407 | None:intergenic | 35.0% | |
| AGTGCATGTTTGGATTAACA+GGG | - | chr1.4:2193903-2193922 | None:intergenic | 35.0% | |
| ATAACCAATATCTCCCCTAA+TGG | + | chr1.4:2194927-2194946 | MS.gene053301:intron | 35.0% | |
| ATGAAGCACAAACATAGACA+CGG | + | chr1.4:2194513-2194532 | MS.gene053301:intron | 35.0% | |
| ATTGCATATATAAGCATGCG+TGG | + | chr1.4:2192319-2192338 | MS.gene053301:intron | 35.0% | |
| CAACAACATGTATTGCGAAA+GGG | + | chr1.4:2195534-2195553 | MS.gene053301:CDS | 35.0% | |
| CTACTTATCTGTGGAAAACT+TGG | + | chr1.4:2195869-2195888 | MS.gene053301:intron | 35.0% | |
| CTCTTTCTGTCTAAACCATA+AGG | + | chr1.4:2194889-2194908 | MS.gene053301:intron | 35.0% | |
| GATGTTTGTGATCATGATCA+TGG | + | chr1.4:2193549-2193568 | MS.gene053301:CDS | 35.0% | |
| GCAGATACTATGTTAGGTAT+TGG | - | chr1.4:2195188-2195207 | None:intergenic | 35.0% | |
| GTCAATATGCTTGAGAGAAA+AGG | - | chr1.4:2194976-2194995 | None:intergenic | 35.0% | |
| GTTGTTGAAGGACTAATACT+AGG | - | chr1.4:2195382-2195401 | None:intergenic | 35.0% | |
| TAGTGCATGTTTGGATTAAC+AGG | - | chr1.4:2193904-2193923 | None:intergenic | 35.0% | |
| TATAAGTGTGACTGTTGCAT+GGG | + | chr1.4:2194248-2194267 | MS.gene053301:intron | 35.0% | |
| TATGATGCATCATCATGCAA+TGG | + | chr1.4:2192898-2192917 | MS.gene053301:CDS | 35.0% | |
| TGAAACTACGAGTAGTTCTT+TGG | - | chr1.4:2195687-2195706 | None:intergenic | 35.0% | |
| TTCAGGCAAAATTACATCAG+CGG | + | chr1.4:2192760-2192779 | MS.gene053301:CDS | 35.0% | |
| TTCGCAAATTAGTGCATGTT+TGG | - | chr1.4:2193913-2193932 | None:intergenic | 35.0% | |
| TTGAGTGTGATAGTAACCTA+AGG | + | chr1.4:2194817-2194836 | MS.gene053301:intron | 35.0% | |
| TTGGGACCAATATCATCTAA+AGG | - | chr1.4:2194217-2194236 | None:intergenic | 35.0% | |
| TTGTAATGCTCTTCTTCTTC+TGG | - | chr1.4:2195517-2195536 | None:intergenic | 35.0% | |
| ! | AAGTCCTGATACACTTTTAG+AGG | + | chr1.4:2193098-2193117 | MS.gene053301:CDS | 35.0% |
| ! | AGCTTTTGGCAAAATCATGA+CGG | + | chr1.4:2193673-2193692 | MS.gene053301:intron | 35.0% |
| ! | ATTTTGGATATGAAGATGGG+AGG | + | chr1.4:2192871-2192890 | MS.gene053301:CDS | 35.0% |
| ! | GTATTTGATGGTTGCTCAAT+AGG | - | chr1.4:2195118-2195137 | None:intergenic | 35.0% |
| ! | TAATAGGAAAGTGTGCATGT+TGG | + | chr1.4:2193488-2193507 | MS.gene053301:CDS | 35.0% |
| ! | TGTAATCATAGGTATCGTGT+TGG | + | chr1.4:2194584-2194603 | MS.gene053301:intron | 35.0% |
| ! | TGTTTCGTTGATTGTGAAAC+AGG | + | chr1.4:2192792-2192811 | MS.gene053301:CDS | 35.0% |
| ! | TTCGGATTTGGAATAAGATG+TGG | + | chr1.4:2194064-2194083 | MS.gene053301:intron | 35.0% |
| ! | TTGTTGAAGCATGTAGCTTT+TGG | + | chr1.4:2193659-2193678 | MS.gene053301:intron | 35.0% |
| !! | ATCTTTGTAGGAGTTGGTAT+AGG | + | chr1.4:2195637-2195656 | MS.gene053301:intron | 35.0% |
| !! | TCTTTGTAGGAGTTGGTATA+GGG | + | chr1.4:2195638-2195657 | MS.gene053301:intron | 35.0% |
| AAAGAGAACTTGAGTGAAGG+TGG | - | chr1.4:2192651-2192670 | None:intergenic | 40.0% | |
| AAAGGGCAACTACTTATCTG+TGG | + | chr1.4:2195860-2195879 | MS.gene053301:intron | 40.0% | |
| AAATAAATGGGCCGGATAGA+GGG | - | chr1.4:2195150-2195169 | None:intergenic | 40.0% | |
| AACATGTATTGCGAAAGGGA+AGG | + | chr1.4:2195538-2195557 | MS.gene053301:CDS | 40.0% | |
| AAGGAGACACTTACCATTAG+GGG | - | chr1.4:2194943-2194962 | None:intergenic | 40.0% | |
| ACAGAAATGGGACCTAATAG+TGG | + | chr1.4:2193348-2193367 | MS.gene053301:CDS | 40.0% | |
| ACTACGAGTAGTTCTTTGGT+AGG | - | chr1.4:2195683-2195702 | None:intergenic | 40.0% | |
| AGAAGGAGACACTTACCATT+AGG | - | chr1.4:2194945-2194964 | None:intergenic | 40.0% | |
| ATTCTGACCTTCCCCATTAA+AGG | + | chr1.4:2194373-2194392 | MS.gene053301:intron | 40.0% | |
| ATTGGACTTGGCATCTTTGT+AGG | + | chr1.4:2195625-2195644 | MS.gene053301:intron | 40.0% | |
| CACCAGTACTTGTCCTTTAA+TGG | - | chr1.4:2194389-2194408 | None:intergenic | 40.0% | |
| CAGATGAATGTGCAACTAGA+AGG | + | chr1.4:2194731-2194750 | MS.gene053301:intron | 40.0% | |
| CATGCAACAGTCACACTTAT+AGG | - | chr1.4:2194249-2194268 | None:intergenic | 40.0% | |
| CCAGTACTTGTCCTTTAATG+GGG | - | chr1.4:2194387-2194406 | None:intergenic | 40.0% | |
| CCTTAGACAAATAAATGGGC+CGG | - | chr1.4:2195158-2195177 | None:intergenic | 40.0% | |
| CTATAAGTGTGACTGTTGCA+TGG | + | chr1.4:2194247-2194266 | MS.gene053301:intron | 40.0% | |
| CTGATCAGGAGCAAAATTGA+GGG | - | chr1.4:2195045-2195064 | None:intergenic | 40.0% | |
| CTTACCATTAGGGGAGATAT+TGG | - | chr1.4:2194934-2194953 | None:intergenic | 40.0% | |
| GAACTACTCGTAGTTTCAAG+AGG | + | chr1.4:2195689-2195708 | MS.gene053301:intron | 40.0% | |
| GAAGGAGACACTTACCATTA+GGG | - | chr1.4:2194944-2194963 | None:intergenic | 40.0% | |
| GGGCACCAATATGTATTTGA+TGG | - | chr1.4:2195130-2195149 | None:intergenic | 40.0% | |
| TACTTGTCCTTTAATGGGGA+AGG | - | chr1.4:2194383-2194402 | None:intergenic | 40.0% | |
| TGATCAGGAGCAAAATTGAG+GGG | - | chr1.4:2195044-2195063 | None:intergenic | 40.0% | |
| TTCAATGCTGGAGTAAGAGT+TGG | + | chr1.4:2195595-2195614 | MS.gene053301:intron | 40.0% | |
| TTGTGACACTCATAAGCACT+TGG | - | chr1.4:2195411-2195430 | None:intergenic | 40.0% | |
| ! | CTTCTAGTTGCACATTCATC+TGG | - | chr1.4:2194733-2194752 | None:intergenic | 40.0% |
| ! | TCATTTTCTGTGCCCTTCAA+AGG | + | chr1.4:2195919-2195938 | MS.gene053301:intron | 40.0% |
| ! | TGATCATGGACTTGTTTCAC+AGG | + | chr1.4:2193563-2193582 | MS.gene053301:CDS | 40.0% |
| !! | AAAGGACAAGTACTGGTGTT+GGG | + | chr1.4:2194391-2194410 | MS.gene053301:intron | 40.0% |
| !! | CTTTGTAGGAGTTGGTATAG+GGG | + | chr1.4:2195639-2195658 | MS.gene053301:intron | 40.0% |
| !! | GTAAGAGTTGGTGTTGGAAT+TGG | + | chr1.4:2195607-2195626 | MS.gene053301:intron | 40.0% |
| !! | TAAAGGACAAGTACTGGTGT+TGG | + | chr1.4:2194390-2194409 | MS.gene053301:intron | 40.0% |
| !! | TATGAAGCACTGATACTCCT+CGG | - | chr1.4:2194652-2194671 | None:intergenic | 40.0% |
| ACACAATGTGCACTACCTAG+TGG | - | chr1.4:2195792-2195811 | None:intergenic | 45.0% | |
| ACATAGACACGGACACAACA+CGG | + | chr1.4:2194524-2194543 | MS.gene053301:intron | 45.0% | |
| CAAATAAATGGGCCGGATAG+AGG | - | chr1.4:2195151-2195170 | None:intergenic | 45.0% | |
| CACTGTGATTGTGTCAGACA+AGG | + | chr1.4:2193698-2193717 | MS.gene053301:intron | 45.0% | |
| CCCCATTAAAGGACAAGTAC+TGG | + | chr1.4:2194384-2194403 | MS.gene053301:intron | 45.0% | |
| CCGGCCCATTTATTTGTCTA+AGG | + | chr1.4:2195155-2195174 | MS.gene053301:intron | 45.0% | |
| CCTGATCAGGAGCAAAATTG+AGG | - | chr1.4:2195046-2195065 | None:intergenic | 45.0% | |
| CTACTCGTAGTTTCAAGAGG+AGG | + | chr1.4:2195692-2195711 | MS.gene053301:intron | 45.0% | |
| CTTGGCATCTTTGTAGGAGT+TGG | + | chr1.4:2195631-2195650 | MS.gene053301:intron | 45.0% | |
| GAGCTATCATGGTTCAATGC+TGG | + | chr1.4:2195583-2195602 | MS.gene053301:intron | 45.0% | |
| GATGCATCATCATGCAATGG+AGG | + | chr1.4:2192901-2192920 | MS.gene053301:CDS | 45.0% | |
| GATTAGGCGTGTCCTAGTAT+CGG | - | chr1.4:2194630-2194649 | None:intergenic | 45.0% | |
| GCATGTTTGGATTAACAGGG+AGG | - | chr1.4:2193900-2193919 | None:intergenic | 45.0% | |
| TATATAAGCATGCGTGGCTG+TGG | + | chr1.4:2192325-2192344 | MS.gene053301:intron | 45.0% | |
| TGGAAGATGGTGAGCTATCA+TGG | + | chr1.4:2195572-2195591 | MS.gene053301:intron | 45.0% | |
| ! | ACATATTGGTGCCCTCTATC+CGG | + | chr1.4:2195136-2195155 | MS.gene053301:intron | 45.0% |
| ! | ATCAGGTTGTAACTCCCGAT+CGG | + | chr1.4:2195060-2195079 | MS.gene053301:intron | 45.0% |
| ! | CCTCAATTTTGCTCCTGATC+AGG | + | chr1.4:2195043-2195062 | MS.gene053301:intron | 45.0% |
| !! | AAGGACAAGTACTGGTGTTG+GGG | + | chr1.4:2194392-2194411 | MS.gene053301:intron | 45.0% |
| !! | GTTGGTGTTGGAATTGGACT+TGG | + | chr1.4:2195613-2195632 | MS.gene053301:intron | 45.0% |
| !!! | AATAATTTTTAAAAATAAGT+GGG | + | chr1.4:2193728-2193747 | MS.gene053301:intron | 5.0% |
| !!! | ACTTATTTTTAAAAATTATT+AGG | - | chr1.4:2193728-2193747 | None:intergenic | 5.0% |
| !!! | TAATAATTTTTAAAAATAAG+TGG | + | chr1.4:2193727-2193746 | MS.gene053301:intron | 5.0% |
| GGACACTGCAGATCAATTGC+AGG | + | chr1.4:2193457-2193476 | MS.gene053301:CDS | 50.0% | |
| GTGATTGTGTCAGACAAGGC+CGG | + | chr1.4:2193702-2193721 | MS.gene053301:intron | 50.0% | |
| TCGGGAGTTACAACCTGATC+AGG | - | chr1.4:2195059-2195078 | None:intergenic | 50.0% | |
| TTTGGTAGGAACGTGCCAAG+AGG | - | chr1.4:2195669-2195688 | None:intergenic | 50.0% | |
| ! | GCACTGATACTCCTCGGATT+AGG | - | chr1.4:2194646-2194665 | None:intergenic | 50.0% |
| !! | GCTGGAGTAAGAGTTGGTGT+TGG | + | chr1.4:2195601-2195620 | MS.gene053301:intron | 50.0% |
| AACAGGGAGGTCTGACGTCA+GGG | - | chr1.4:2193887-2193906 | None:intergenic | 55.0% | |
| ACTAGGACACGCCTAATCCG+AGG | + | chr1.4:2194632-2194651 | MS.gene053301:intron | 55.0% | |
| AGCATGCGTGGCTGTGGTAA+AGG | + | chr1.4:2192331-2192350 | MS.gene053301:intron | 55.0% | |
| AGTGTGACTGTTGCATGGGC+AGG | + | chr1.4:2194252-2194271 | MS.gene053301:intron | 55.0% | |
| TAACAGGGAGGTCTGACGTC+AGG | - | chr1.4:2193888-2193907 | None:intergenic | 55.0% | |
| TGGTATAGGGGTCAGCCTCT+TGG | + | chr1.4:2195651-2195670 | MS.gene053301:intron | 55.0% | |
| ! | TCCTAGTATCGGACACGCGT+CGG | - | chr1.4:2194619-2194638 | None:intergenic | 55.0% |
| !! | GACAAGTACTGGTGTTGGGG+AGG | + | chr1.4:2194395-2194414 | MS.gene053301:intron | 55.0% |
| !! | GTTTTGGCGGCCTTACCCTT+AGG | + | chr1.4:2193857-2193876 | MS.gene053301:intron | 55.0% |
| ACCGACGCGTGTCCGATACT+AGG | + | chr1.4:2194615-2194634 | MS.gene053301:intron | 60.0% | |
| TCAGGGTCGGCCTAAGGGTA+AGG | - | chr1.4:2193870-2193889 | None:intergenic | 60.0% | |
| TGACGTCAGGGTCGGCCTAA+GGG | - | chr1.4:2193875-2193894 | None:intergenic | 60.0% | |
| TGTTGTGGGGCCTAACGCGA+GGG | + | chr1.4:2193835-2193854 | MS.gene053301:intron | 60.0% | |
| TTGTTGTGGGGCCTAACGCG+AGG | + | chr1.4:2193834-2193853 | MS.gene053301:intron | 60.0% | |
| !! | GCCTAACGCGAGGGTTTTGG+CGG | + | chr1.4:2193844-2193863 | MS.gene053301:intron | 60.0% |
| CTGACGTCAGGGTCGGCCTA+AGG | - | chr1.4:2193876-2193895 | None:intergenic | 65.0% | |
| GCCGCCAAAACCCTCGCGTT+AGG | - | chr1.4:2193848-2193867 | None:intergenic | 65.0% | |
| GGGAGGTCTGACGTCAGGGT+CGG | - | chr1.4:2193883-2193902 | None:intergenic | 65.0% | |
| ! | GGGGCCTAACGCGAGGGTTT+TGG | + | chr1.4:2193841-2193860 | MS.gene053301:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2192291 | 2196042 | 2192291 | ID=MS.gene053301 |
| chr1.4 | mRNA | 2192291 | 2196042 | 2192291 | ID=MS.gene053301.t1;Parent=MS.gene053301 |
| chr1.4 | exon | 2192291 | 2192297 | 2192291 | ID=MS.gene053301.t1.exon1;Parent=MS.gene053301.t1 |
| chr1.4 | CDS | 2192291 | 2192297 | 2192291 | ID=cds.MS.gene053301.t1;Parent=MS.gene053301.t1 |
| chr1.4 | exon | 2192698 | 2193584 | 2192698 | ID=MS.gene053301.t1.exon2;Parent=MS.gene053301.t1 |
| chr1.4 | CDS | 2192698 | 2193584 | 2192698 | ID=cds.MS.gene053301.t1;Parent=MS.gene053301.t1 |
| chr1.4 | exon | 2195490 | 2195580 | 2195490 | ID=MS.gene053301.t1.exon3;Parent=MS.gene053301.t1 |
| chr1.4 | CDS | 2195490 | 2195580 | 2195490 | ID=cds.MS.gene053301.t1;Parent=MS.gene053301.t1 |
| chr1.4 | exon | 2195975 | 2196042 | 2195975 | ID=MS.gene053301.t1.exon4;Parent=MS.gene053301.t1 |
| chr1.4 | CDS | 2195975 | 2196042 | 2195975 | ID=cds.MS.gene053301.t1;Parent=MS.gene053301.t1 |
| Gene Sequence |
| Protein sequence |
