AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27369

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27369.t1 MTR_1g021500 93.320 509 15 4 1 508 1 491 0.0 965
MS.gene27369.t1 MTR_1g021500 93.435 457 12 3 1 457 1 439 0.0 872
MS.gene27369.t1 MTR_1g021440 49.357 389 160 10 10 393 6 362 1.29e-110 334
MS.gene27369.t1 MTR_1g021440 48.454 388 147 10 10 393 6 344 1.72e-106 323
MS.gene27369.t1 MTR_1g021440 63.035 257 76 5 10 264 6 245 7.13e-105 316
MS.gene27369.t1 MTR_1g021440 62.205 254 77 5 10 261 6 242 2.07e-102 309
MS.gene27369.t1 MTR_1g021330 44.961 387 160 9 10 393 9 345 1.21e-96 298
MS.gene27369.t1 MTR_1g021320 43.779 434 185 12 11 396 168 590 6.56e-96 309
MS.gene27369.t1 MTR_1g021320 69.942 173 44 3 6 177 4 169 7.78e-73 247
MS.gene27369.t1 MTR_1g021350 56.757 259 82 5 7 264 2 231 1.09e-89 278
MS.gene27369.t1 MTR_1g021400 43.262 423 142 16 4 409 8 349 2.55e-89 278
MS.gene27369.t1 MTR_1g021435 44.417 403 145 14 7 393 2 341 2.73e-88 276
MS.gene27369.t1 MTR_1g021410 40.931 408 172 11 10 414 6 347 2.85e-81 257
MS.gene27369.t1 MTR_1g021380 40.152 396 142 9 10 393 5 317 8.31e-80 253
MS.gene27369.t1 MTR_1g021360 42.228 386 122 12 11 393 168 455 1.05e-77 251
MS.gene27369.t1 MTR_1g021360 67.045 176 49 2 2 177 3 169 2.82e-70 232
MS.gene27369.t1 MTR_1g021290 61.714 175 57 4 15 187 145 311 1.23e-63 211
MS.gene27369.t1 MTR_1g021290 72.059 136 38 0 2 137 3 138 1.93e-63 210
MS.gene27369.t1 MTR_1g021270 37.255 102 63 1 26 127 15 115 6.31e-15 77.8
MS.gene27369.t1 MTR_3g098790 35.484 93 59 1 25 116 11 103 1.64e-14 75.1
MS.gene27369.t1 MTR_7g050640 34.021 97 63 1 21 116 7 103 4.94e-14 68.9
MS.gene27369.t1 MTR_7g050580 38.144 97 56 1 20 116 11 103 1.13e-13 72.4
MS.gene27369.t1 MTR_7g050710 35.870 92 58 1 25 115 11 102 1.94e-13 71.6
MS.gene27369.t1 MTR_7g050720 36.957 92 57 1 26 116 9 100 9.18e-13 69.7
MS.gene27369.t1 MTR_7g050590 36.709 79 50 0 42 120 2 80 2.63e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27369.t1 AT4G33280 34.878 410 232 10 4 410 3 380 1.99e-68 225
MS.gene27369.t1 AT4G33280 48.780 164 81 3 4 166 3 164 5.61e-47 165
MS.gene27369.t1 AT4G33280 52.817 142 64 3 4 144 3 142 4.25e-45 161
MS.gene27369.t1 AT4G33280 27.727 220 130 5 216 410 104 319 5.36e-19 88.6
MS.gene27369.t1 AT3G18990 24.543 383 225 13 38 415 18 341 4.37e-23 100
MS.gene27369.t1 AT3G18990 24.538 379 222 13 38 411 18 337 1.42e-22 99.8
MS.gene27369.t1 AT4G34400 31.293 147 94 2 27 173 17 156 1.89e-18 87.8
MS.gene27369.t1 AT4G34400 31.293 147 94 2 27 173 17 156 1.89e-18 87.8
MS.gene27369.t1 AT3G06160 28.017 232 124 8 27 255 11 202 3.26e-16 80.1
MS.gene27369.t1 AT3G06160 28.017 232 124 8 27 255 11 202 3.26e-16 80.1
MS.gene27369.t1 AT3G06160 28.017 232 124 8 27 255 11 202 3.26e-16 80.1
MS.gene27369.t1 AT3G06160 27.155 232 126 7 27 255 26 217 3.61e-16 80.1
MS.gene27369.t1 AT3G06160 27.155 232 126 8 27 255 70 261 3.75e-16 80.5
MS.gene27369.t1 AT3G06220 33.000 100 65 2 27 126 11 108 3.17e-14 71.2
MS.gene27369.t1 AT1G49480 28.824 170 111 5 247 415 66 226 1.12e-12 68.2
MS.gene27369.t1 AT1G49480 28.824 170 111 5 247 415 66 226 1.12e-12 68.2
MS.gene27369.t1 AT1G49480 28.824 170 111 5 247 415 66 226 1.12e-12 68.2
MS.gene27369.t1 AT3G53310 37.500 80 50 0 37 116 21 100 3.04e-12 67.8
MS.gene27369.t1 AT5G57720 35.955 89 56 1 27 114 13 101 4.64e-11 64.3

Find 132 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTAGTATCCACTTATT+AGG 0.155011 1.2:+3118094 None:intergenic
CACATAATCCTTGAGGTATT+TGG 0.165984 1.2:+3116658 None:intergenic
CTCAGGAGAAAGCTCTTAAT+TGG 0.185662 1.2:-3119359 MS.gene27369:CDS
CAATGGCCTCCAGTTCTGTT+TGG 0.239462 1.2:+3117747 None:intergenic
CTTGGGAAGAAGACATTTAT+TGG 0.243378 1.2:-3120860 MS.gene27369:CDS
TGAAATGAATGAATTGAAAA+TGG 0.249343 1.2:+3120835 None:intergenic
GACATTGTTTGAAAATGTTT+TGG 0.262691 1.2:+3120004 None:intergenic
GTATATAGTTCCTGCGTCTT+TGG 0.290182 1.2:+3118418 None:intergenic
CTCAAGCCCCTCTTCTTTCC+TGG 0.311310 1.2:+3117818 None:intergenic
ATCCACCACCTTGTTCAGTT+TGG 0.318706 1.2:+3119715 None:intergenic
TGTGACAGGCCTTCTATTTG+AGG 0.325138 1.2:+3118396 None:intergenic
CGTAACAATGGAGGACTTAC+TGG 0.329858 1.2:-3117992 MS.gene27369:CDS
AATGGCCTCCAGTTCTGTTT+GGG 0.333107 1.2:+3117748 None:intergenic
GGTTTAGTATCCACTTATTA+GGG 0.333478 1.2:+3118095 None:intergenic
TCCACCACCTTGTTCAGTTT+GGG 0.342784 1.2:+3119716 None:intergenic
TTGTCCGTTTACCAGTTGTT+TGG 0.357600 1.2:+3119451 None:intergenic
CCTGAAAATGTGGTCCTAAA+AGG 0.366161 1.2:-3119969 MS.gene27369:CDS
TTCAGTTTGGGCGGCAGCCT+CGG 0.376086 1.2:+3119728 None:intergenic
TGTCCGTTTACCAGTTGTTT+GGG 0.377248 1.2:+3119452 None:intergenic
GGTGGAGTGACATGGAATAT+AGG 0.380908 1.2:-3119942 MS.gene27369:CDS
TGCGTCTTTGGAGAGCCCTT+TGG 0.384532 1.2:+3118430 None:intergenic
GTACCTTCTGAAACTACTAA+TGG 0.385556 1.2:-3119567 MS.gene27369:CDS
CACCGTTGTACTTAAAGAAC+AGG 0.391008 1.2:+3119835 None:intergenic
GGAGAGCCCTTTGGAGACGC+TGG 0.392912 1.2:+3118439 None:intergenic
GTGGTGGGTGCAGCAGATCT+TGG 0.408686 1.2:-3120878 MS.gene27369:CDS
ATGAACTCTTATCTCAAATA+CGG 0.420688 1.2:-3116706 MS.gene27369:CDS
GGTCTTCCTCTCTTCTTACT+CGG 0.421285 1.2:+3119399 None:intergenic
CGGTGCTGCCCAAACAGAAC+TGG 0.423283 1.2:-3117756 MS.gene27369:CDS
CCCTTTGGAGACGCTGGGGC+AGG 0.428621 1.2:+3118445 None:intergenic
GAAGTCAATACTCCTTCTAA+TGG 0.429462 1.2:-3119654 MS.gene27369:CDS
AACACACGTCAAACTCTTCA+AGG 0.430454 1.2:+3117939 None:intergenic
ACACAATTACGCACCTTCAA+TGG 0.435249 1.2:+3117730 None:intergenic
AACTATATACCTCAAATAGA+AGG 0.436916 1.2:-3118405 MS.gene27369:CDS
GCATCAGACATTAATTGCTC+AGG 0.442937 1.2:+3119510 None:intergenic
TGGTGGGTGCAGCAGATCTT+GGG 0.446281 1.2:-3120877 MS.gene27369:CDS
GTGGAGTGACATGGAATATA+GGG 0.454700 1.2:-3119941 MS.gene27369:CDS
CAATTGTTGAGCAAAATCAT+TGG 0.454715 1.2:+3120797 None:intergenic
CAGTTCTGTTTGGGCAGCAC+CGG 0.454969 1.2:+3117757 None:intergenic
AAAACCAGCTTAGATCTAGA+AGG 0.457413 1.2:-3116623 MS.gene27369:CDS
GAGAGCCCTTTGGAGACGCT+GGG 0.458201 1.2:+3118440 None:intergenic
CGTCCCAAACAACTGGTAAA+CGG 0.458610 1.2:-3119455 MS.gene27369:CDS
ACTGTTCCGTCCCAAACAAC+TGG 0.462388 1.2:-3119462 MS.gene27369:CDS
CCTTCATCAACACCATTAGA+AGG 0.467182 1.2:+3119642 None:intergenic
AAGAGGGGCTTGAGTTCTAC+AGG 0.469641 1.2:-3117809 MS.gene27369:CDS
TCCTGAGAATTAGACGTTCG+TGG 0.469709 1.2:+3119375 None:intergenic
ACCACGAACGTCTAATTCTC+AGG 0.472756 1.2:-3119376 MS.gene27369:CDS
TCAGGAGAAAGCTCTTAATT+GGG 0.480968 1.2:-3119358 MS.gene27369:CDS
GGAGAATGCACCGCAGTAAG+AGG 0.480989 1.2:+3117839 None:intergenic
AGGAGCTGAGACAGACGAGC+AGG 0.482943 1.2:-3116747 MS.gene27369:CDS
ACAGACGCAACAGCATAAAC+AGG 0.486042 1.2:+3119423 None:intergenic
ACAGAACTGGAGGCCATTGA+AGG 0.495326 1.2:-3117743 MS.gene27369:intron
TACGCATGGGTAAGAATGAA+TGG 0.495657 1.2:-3118042 MS.gene27369:CDS
CTTACTGCGGTGCATTCTCC+AGG 0.496763 1.2:-3117836 MS.gene27369:CDS
TGGGTAAGAATGAATGGCTT+GGG 0.497908 1.2:-3118036 MS.gene27369:CDS
ATGGGTAAGAATGAATGGCT+TGG 0.510570 1.2:-3118037 MS.gene27369:CDS
GTTTGGGACGGAACAGTTGT+TGG 0.513367 1.2:+3119468 None:intergenic
ACCTGCCCCAGCGTCTCCAA+AGG 0.514129 1.2:-3118446 MS.gene27369:CDS
GTCTTCCTCTCTTCTTACTC+GGG 0.516995 1.2:+3119400 None:intergenic
GAAATGAATGAATTGAAAAT+GGG 0.517659 1.2:+3120836 None:intergenic
CCTTCTAATGGTGTTGATGA+AGG 0.519085 1.2:-3119642 MS.gene27369:CDS
ACTAGTCATTCCCTAATAAG+TGG 0.519210 1.2:-3118105 MS.gene27369:intron
GTTTCAGAAGGTACAGCAAA+TGG 0.520424 1.2:+3119576 None:intergenic
CTTCAAATGGGATTACAAAA+CGG 0.520715 1.2:-3120900 None:intergenic
GGTGCCTTCTAGATCTAAGC+TGG 0.524684 1.2:+3116619 None:intergenic
CAACGGTGAATCGTTGTTTG+AGG 0.529531 1.2:-3119820 MS.gene27369:CDS
AAAGCTCTTAATTGGGTGAC+TGG 0.530787 1.2:-3119351 MS.gene27369:intron
ATATTCCATGTCACTCCACC+AGG 0.530935 1.2:+3119945 None:intergenic
ATGGGATTACAAAACGGTGG+TGG 0.534211 1.2:-3120894 MS.gene27369:CDS
CCTGCCCCAGCGTCTCCAAA+GGG 0.534279 1.2:-3118445 MS.gene27369:CDS
CAAATACCTCAAGGATTATG+TGG 0.537700 1.2:-3116657 MS.gene27369:CDS
ATGTCATGCAAATGACCAGC+TGG 0.547589 1.2:+3117908 None:intergenic
TCAAGATGTGATATTACGCA+TGG 0.548312 1.2:-3118056 MS.gene27369:CDS
CATCAGACATTAATTGCTCA+GGG 0.548758 1.2:+3119511 None:intergenic
CGTTTACCAGTTGTTTGGGA+CGG 0.549463 1.2:+3119456 None:intergenic
TGGCGAGAGTTTCTGTGAGA+AGG 0.555646 1.2:-3119784 MS.gene27369:CDS
AAGGTCCTGGTGGAGTGACA+TGG 0.566287 1.2:-3119950 MS.gene27369:CDS
TGTATACAAGAGATTCTTCG+TGG 0.566958 1.2:-3118290 MS.gene27369:intron
AGTCGTTCTCTTTCAAAGAG+TGG 0.570224 1.2:+3119859 None:intergenic
AATCTCTTGTATACATGTGA+AGG 0.571018 1.2:+3118298 None:intergenic
CTTGAGACGATGGAGCAAGA+TGG 0.572879 1.2:+3118074 None:intergenic
TTTCCATTAGTAGTTTCAGA+AGG 0.573429 1.2:+3119564 None:intergenic
GAGTTCTACAGGAAAGAAGA+GGG 0.574907 1.2:-3117798 MS.gene27369:CDS
AAAGAAGCTGCCTGAAAATG+TGG 0.583717 1.2:-3119979 MS.gene27369:CDS
GTGTGTTTGTTCAAACCAGC+TGG 0.583771 1.2:-3117923 MS.gene27369:CDS
GCTGCCGCCCAAACTGAACA+AGG 0.584723 1.2:-3119723 MS.gene27369:CDS
GCATTCTCCAGGAAAGAAGA+GGG 0.592388 1.2:-3117825 MS.gene27369:CDS
TTCCTGTTCTTTAAGTACAA+CGG 0.596255 1.2:-3119837 MS.gene27369:CDS
AAAATCATCCAAATACCTCA+AGG 0.596480 1.2:-3116666 MS.gene27369:CDS
TGAACTCTTATCTCAAATAC+GGG 0.597831 1.2:-3116705 MS.gene27369:CDS
AAACAACTGGTAAACGGACA+AGG 0.598332 1.2:-3119449 MS.gene27369:CDS
TGCATTCTCCAGGAAAGAAG+AGG 0.603183 1.2:-3117826 MS.gene27369:CDS
TGCTGCCCAAACAGAACTGG+AGG 0.604957 1.2:-3117753 MS.gene27369:CDS
AGTTACAAGCAAGCTCTCCT+CGG 0.605075 1.2:+3118327 None:intergenic
AAGGTACAGCAAATGGCACT+CGG 0.606956 1.2:+3119583 None:intergenic
CATAATATTCGTAACAATGG+AGG 0.607755 1.2:-3118001 MS.gene27369:CDS
AGGTGGTGGATGTTCTAGCA+AGG 0.607880 1.2:-3119703 MS.gene27369:CDS
GCCCAAACTGAACAAGGTGG+TGG 0.609494 1.2:-3119717 MS.gene27369:CDS
AATGTGGTCCTAAAAGGTCC+TGG 0.611828 1.2:-3119963 MS.gene27369:CDS
GTGGATGTTCTAGCAAGGGA+AGG 0.613993 1.2:-3119698 MS.gene27369:CDS
TGAGTTCTACAGGAAAGAAG+AGG 0.614505 1.2:-3117799 MS.gene27369:CDS
TGGGATTACAAAACGGTGGT+GGG 0.615464 1.2:-3120893 MS.gene27369:CDS
AACAATGGAGGACTTACTGG+TGG 0.616719 1.2:-3117989 MS.gene27369:CDS
TATCATAATATTCGTAACAA+TGG 0.617731 1.2:-3118004 MS.gene27369:CDS
ACCACCTTGTTCAGTTTGGG+CGG 0.621987 1.2:+3119719 None:intergenic
GGTGGTGGATGTTCTAGCAA+GGG 0.623883 1.2:-3119702 MS.gene27369:CDS
AAAGGGCTCTCCAAAGACGC+AGG 0.627367 1.2:-3118428 MS.gene27369:CDS
CAAGATGTGATATTACGCAT+GGG 0.629761 1.2:-3118055 MS.gene27369:CDS
AGACATTAATTGCTCAGGGG+TGG 0.633255 1.2:+3119515 None:intergenic
ATGGAGGACTTACTGGTGGG+TGG 0.638391 1.2:-3117985 MS.gene27369:CDS
AATATCACATCTTGAGACGA+TGG 0.639490 1.2:+3118064 None:intergenic
GGAGATTACTCCTCTTACTG+CGG 0.639926 1.2:-3117849 MS.gene27369:CDS
AGAGCCCTTTGGAGACGCTG+GGG 0.640012 1.2:+3118441 None:intergenic
TCGGAAATGTGGGCACGCCG+AGG 0.642864 1.2:-3119745 MS.gene27369:CDS
CGAGAGTTTCTGTGAGAAGG+CGG 0.644557 1.2:-3119781 MS.gene27369:CDS
GGAGTTAAGAGAACACTGAC+CGG 0.646401 1.2:-3117776 MS.gene27369:CDS
TGGATGTTCTAGCAAGGGAA+GGG 0.650202 1.2:-3119697 MS.gene27369:CDS
AAGGGACACAAACAATTCTG+TGG 0.651587 1.2:-3119679 MS.gene27369:CDS
GGAGCTGAGACAGACGAGCA+GGG 0.652803 1.2:-3116746 MS.gene27369:CDS
TTGGTACCACATAATCCTTG+AGG 0.659780 1.2:+3116651 None:intergenic
GGCTCAGGCAGCATGTACCG+AGG 0.663486 1.2:-3118344 MS.gene27369:CDS
GTGGTCCTAAAAGGTCCTGG+TGG 0.664078 1.2:-3119960 MS.gene27369:CDS
ATAGGGCTGACAAGTAGAGA+CGG 0.678435 1.2:-3119924 MS.gene27369:CDS
ACAATGGAGGACTTACTGGT+GGG 0.682704 1.2:-3117988 MS.gene27369:CDS
TCTGTCCCGAGTAAGAAGAG+AGG 0.684134 1.2:-3119405 MS.gene27369:CDS
AGTTCTACAGGAAAGAAGAG+GGG 0.697073 1.2:-3117797 MS.gene27369:CDS
CAAATGGGATTACAAAACGG+TGG 0.705155 1.2:-3120897 MS.gene27369:CDS
CATTCTCCAGGAAAGAAGAG+GGG 0.708428 1.2:-3117824 MS.gene27369:CDS
TGAGAATTAGACGTTCGTGG+TGG 0.713597 1.2:+3119378 None:intergenic
GGTGACGACTCAGCTAGCAG+AGG 0.724066 1.2:+3116598 None:intergenic
GCCGCCCAAACTGAACAAGG+TGG 0.731431 1.2:-3119720 MS.gene27369:CDS
ATCAGACATTAATTGCTCAG+GGG 0.741591 1.2:+3119512 None:intergenic
CAACTGGTAAACGGACAAGG+AGG 0.752519 1.2:-3119446 MS.gene27369:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATAAAAATAATCATAAT+TGG - chr1.2:3118614-3118633 MS.gene27369:intron 10.0%
!!! TTAATTGTACATTATTTTTA+TGG - chr1.2:3120727-3120746 MS.gene27369:intron 10.0%
!! AAGTTAAAAAAGTAAAGTAA+GGG + chr1.2:3119250-3119269 None:intergenic 15.0%
!! ATAAAAATAAAAACACAATG+AGG + chr1.2:3119307-3119326 None:intergenic 15.0%
!! TATAATAAAGTTAAAAATGC+AGG + chr1.2:3119340-3119359 None:intergenic 15.0%
!!! ATGAATAATTTTATTACATG+AGG + chr1.2:3120643-3120662 None:intergenic 15.0%
!!! TTATTTTGATTTTGAATAAC+CGG - chr1.2:3118425-3118444 MS.gene27369:CDS 15.0%
!! AACTAAAATCATGTAAAACA+AGG - chr1.2:3120360-3120379 MS.gene27369:intron 20.0%
!! AATCTCTCATTACTAAAATT+TGG + chr1.2:3118643-3118662 None:intergenic 20.0%
!! CAAGTTAAAAAAGTAAAGTA+AGG + chr1.2:3119251-3119270 None:intergenic 20.0%
!! CATATACTTGATATTATGAA+TGG - chr1.2:3117278-3117297 MS.gene27369:intron 20.0%
!! CTTTCAGAAAAAAAATTATG+TGG + chr1.2:3116907-3116926 None:intergenic 20.0%
!! GAAATGAATGAATTGAAAAT+GGG + chr1.2:3116668-3116687 None:intergenic 20.0%
!! TATCATAATATTCGTAACAA+TGG - chr1.2:3119497-3119516 MS.gene27369:CDS 20.0%
!! TGAAATGAATGAATTGAAAA+TGG + chr1.2:3116669-3116688 None:intergenic 20.0%
!!! ACATTGTTTGAAAATGTTTT+GGG + chr1.2:3117499-3117518 None:intergenic 20.0%
!!! GTCTTTTTAAATAATGTTGT+AGG - chr1.2:3117065-3117084 MS.gene27369:intron 20.0%
!!! TACATTATTTTTATGGATCA+AGG - chr1.2:3120734-3120753 MS.gene27369:intron 20.0%
!!! TCAGTTTTGCAAAATAATTA+GGG + chr1.2:3120019-3120038 None:intergenic 20.0%
!!! TGATTTTACTATGTTTCTTT+TGG + chr1.2:3120822-3120841 None:intergenic 20.0%
!!! TTCAGTTTTGCAAAATAATT+AGG + chr1.2:3120020-3120039 None:intergenic 20.0%
!!! TTTAGTAATGAGAGATTTTT+GGG - chr1.2:3118646-3118665 MS.gene27369:intron 20.0%
!!! TTTGAGGTTTTAATATTTGA+TGG - chr1.2:3117697-3117716 MS.gene27369:intron 20.0%
!!! TTTTAGTAATGAGAGATTTT+TGG - chr1.2:3118645-3118664 MS.gene27369:intron 20.0%
! AAAGAAACATTTAACACTTG+TGG - chr1.2:3118201-3118220 MS.gene27369:intron 25.0%
! AACTATATACCTCAAATAGA+AGG - chr1.2:3119096-3119115 MS.gene27369:intron 25.0%
! AGTTACATGAAATTGGAATT+TGG + chr1.2:3118467-3118486 None:intergenic 25.0%
! ATGAACTCTTATCTCAAATA+CGG - chr1.2:3120795-3120814 MS.gene27369:intron 25.0%
! CCAATTTCATGTAACTATAT+AGG - chr1.2:3118471-3118490 MS.gene27369:intron 25.0%
! CCTATATAGTTACATGAAAT+TGG + chr1.2:3118474-3118493 None:intergenic 25.0%
! TATATGTTAACAGTTGTGTT+AGG - chr1.2:3119831-3119850 MS.gene27369:CDS 25.0%
! TGTAAATACTGCATTACAAA+TGG + chr1.2:3120215-3120234 None:intergenic 25.0%
!! ATCGTTTTATGTCTATGTTT+TGG - chr1.2:3119876-3119895 MS.gene27369:CDS 25.0%
!! GAACTATGCATTTACATTTT+AGG - chr1.2:3117165-3117184 MS.gene27369:intron 25.0%
!! GACATTGTTTGAAAATGTTT+TGG + chr1.2:3117500-3117519 None:intergenic 25.0%
!! TTTTTACTTATGAATGACGA+CGG - chr1.2:3118178-3118197 MS.gene27369:intron 25.0%
!!! GAAGTTTATATTTTGTTTGC+AGG - chr1.2:3117468-3117487 MS.gene27369:intron 25.0%
!!! GATATTCCATCATTACTTTT+TGG - chr1.2:3118536-3118555 MS.gene27369:intron 25.0%
!!! GTAGGTTATAATTGACTTTT+AGG - chr1.2:3117384-3117403 MS.gene27369:intron 25.0%
!!! GTGACATTTGTTGTTTATAA+TGG + chr1.2:3118327-3118346 None:intergenic 25.0%
!!! TGTCAAGTTTTTTTGATGAA+AGG - chr1.2:3116998-3117017 MS.gene27369:intron 25.0%
AAAATCATCCAAATACCTCA+AGG - chr1.2:3120835-3120854 MS.gene27369:CDS 30.0%
AAACATTAAAAACAGCCGTT+TGG - chr1.2:3120522-3120541 MS.gene27369:intron 30.0%
AAATTTCATCACTTTCAGAG+GGG + chr1.2:3116804-3116823 None:intergenic 30.0%
AATCTCTTGTATACATGTGA+AGG + chr1.2:3119206-3119225 None:intergenic 30.0%
CAAATTTCATCACTTTCAGA+GGG + chr1.2:3116805-3116824 None:intergenic 30.0%
CAATTGTTGAGCAAAATCAT+TGG + chr1.2:3116707-3116726 None:intergenic 30.0%
CACTCATTCATTCAAACATT+CGG + chr1.2:3118516-3118535 None:intergenic 30.0%
CATAATATTCGTAACAATGG+AGG - chr1.2:3119500-3119519 MS.gene27369:CDS 30.0%
CATGTAACTATATAGGTGAT+AGG - chr1.2:3118478-3118497 MS.gene27369:intron 30.0%
CTCTCATTACTAAAATTTGG+TGG + chr1.2:3118640-3118659 None:intergenic 30.0%
CTGTTATCCCAATTAAATAG+AGG - chr1.2:3120582-3120601 MS.gene27369:intron 30.0%
GCTGACATGAATTTCTTTAT+TGG - chr1.2:3120390-3120409 MS.gene27369:intron 30.0%
GGTTTAGTATCCACTTATTA+GGG + chr1.2:3119409-3119428 None:intergenic 30.0%
GTCTTAACTATTGCATTCAT+TGG + chr1.2:3118286-3118305 None:intergenic 30.0%
TAATATTGACATGTTGACAC+CGG + chr1.2:3117340-3117359 None:intergenic 30.0%
TATGCATTTAGTAGTGTGTT+AGG - chr1.2:3120489-3120508 MS.gene27369:intron 30.0%
TGAACTCTTATCTCAAATAC+GGG - chr1.2:3120796-3120815 MS.gene27369:intron 30.0%
TGAGATTGAAAAAACTCTTC+AGG - chr1.2:3119133-3119152 MS.gene27369:intron 30.0%
TGATTTATGTGGTTGATCTT+GGG - chr1.2:3117225-3117244 MS.gene27369:intron 30.0%
TGGTTTAGTATCCACTTATT+AGG + chr1.2:3119410-3119429 None:intergenic 30.0%
TTACACATAGTGAATTACCT+AGG + chr1.2:3119939-3119958 None:intergenic 30.0%
TTCCTGTTCTTTAAGTACAA+CGG - chr1.2:3117664-3117683 MS.gene27369:intron 30.0%
TTGCAAGAAAGTTTGATCTT+TGG - chr1.2:3116958-3116977 MS.gene27369:intron 30.0%
TTTAACACTTGTGGTAAAAG+CGG - chr1.2:3118210-3118229 MS.gene27369:intron 30.0%
TTTCCATTAGTAGTTTCAGA+AGG + chr1.2:3117940-3117959 None:intergenic 30.0%
! AATAACCGGAACATTTTCAA+AGG - chr1.2:3118439-3118458 MS.gene27369:CDS 30.0%
! ATAACCGGAACATTTTCAAA+GGG - chr1.2:3118440-3118459 MS.gene27369:CDS 30.0%
! CAATGATTTTGCTCAACAAT+TGG - chr1.2:3116705-3116724 MS.gene27369:CDS 30.0%
! CTCTGAAAGTGATGAAATTT+GGG - chr1.2:3116804-3116823 MS.gene27369:intron 30.0%
! GTTTTGCAAAATAATTAGGG+TGG + chr1.2:3120016-3120035 None:intergenic 30.0%
! TGTGGTCTAGAATTAAATTG+AGG + chr1.2:3118565-3118584 None:intergenic 30.0%
!! CTATGTTTTGGATGTTATGA+TGG - chr1.2:3119888-3119907 MS.gene27369:CDS 30.0%
!! TTGTTGTTTATAATGGTCCA+CGG + chr1.2:3118320-3118339 None:intergenic 30.0%
!!! ATGAATGGCTGTTTTTGAAT+CGG - chr1.2:3117293-3117312 MS.gene27369:intron 30.0%
!!! CTTATTTTGTTCGGAAATGT+GGG - chr1.2:3117746-3117765 MS.gene27369:CDS 30.0%
AAAACCAGCTTAGATCTAGA+AGG - chr1.2:3120878-3120897 MS.gene27369:CDS 35.0%
AATATCACATCTTGAGACGA+TGG + chr1.2:3119440-3119459 None:intergenic 35.0%
ACCTTCATATTCTCATTCAC+GGG - chr1.2:3120102-3120121 MS.gene27369:intron 35.0%
ACTAGTCATTCCCTAATAAG+TGG - chr1.2:3119396-3119415 MS.gene27369:CDS 35.0%
ACTTGTCTAATCTTCTACCT+AGG - chr1.2:3119919-3119938 MS.gene27369:CDS 35.0%
AGGACTCCAAAAAGTAATGA+TGG + chr1.2:3118545-3118564 None:intergenic 35.0%
AGGCATTTAGTCTACTAAGA+TGG - chr1.2:3117404-3117423 MS.gene27369:intron 35.0%
ATATAGGTGATAGGCAAAAG+TGG - chr1.2:3118487-3118506 MS.gene27369:intron 35.0%
ATCAGACATTAATTGCTCAG+GGG + chr1.2:3117992-3118011 None:intergenic 35.0%
CAAATACCTCAAGGATTATG+TGG - chr1.2:3120844-3120863 MS.gene27369:CDS 35.0%
CAAGATGTGATATTACGCAT+GGG - chr1.2:3119446-3119465 MS.gene27369:CDS 35.0%
CAAGTTTACTATGCTTCTTG+TGG + chr1.2:3118583-3118602 None:intergenic 35.0%
CACCTTCATATTCTCATTCA+CGG - chr1.2:3120101-3120120 MS.gene27369:intron 35.0%
CAGTAGACAGATATGTTTCT+TGG + chr1.2:3118349-3118368 None:intergenic 35.0%
CATCAGACATTAATTGCTCA+GGG + chr1.2:3117993-3118012 None:intergenic 35.0%
CCAAATTTCATCACTTTCAG+AGG + chr1.2:3116806-3116825 None:intergenic 35.0%
CGAATGTTTGAATGAATGAG+TGG - chr1.2:3118514-3118533 MS.gene27369:intron 35.0%
CTTGGGAAGAAGACATTTAT+TGG - chr1.2:3116641-3116660 MS.gene27369:CDS 35.0%
GAAGTCAATACTCCTTCTAA+TGG - chr1.2:3117847-3117866 MS.gene27369:CDS 35.0%
GATTGAAAAAACTCTTCAGG+TGG - chr1.2:3119136-3119155 MS.gene27369:intron 35.0%
GGTCATGTTTGTGATTTATG+TGG - chr1.2:3117214-3117233 MS.gene27369:intron 35.0%
GTGATTTATGTGGTTGATCT+TGG - chr1.2:3117224-3117243 MS.gene27369:intron 35.0%
TATAGGTGATAGGCAAAAGT+GGG - chr1.2:3118488-3118507 MS.gene27369:intron 35.0%
TCAAGATGTGATATTACGCA+TGG - chr1.2:3119445-3119464 MS.gene27369:CDS 35.0%
TCAGGAGAAAGCTCTTAATT+GGG - chr1.2:3118143-3118162 MS.gene27369:intron 35.0%
TCCATGTTTCAAGAAAGCAA+TGG + chr1.2:3120078-3120097 None:intergenic 35.0%
TCCATTGCTTTCTTGAAACA+TGG - chr1.2:3120074-3120093 MS.gene27369:intron 35.0%
TCTTTATTGGAACTCTGTGT+TGG - chr1.2:3120403-3120422 MS.gene27369:intron 35.0%
TGTATACAAGAGATTCTTCG+TGG - chr1.2:3119211-3119230 MS.gene27369:intron 35.0%
TTCATGCATGTGTCATGATA+GGG - chr1.2:3117193-3117212 MS.gene27369:intron 35.0%
TTTCATGCATGTGTCATGAT+AGG - chr1.2:3117192-3117211 MS.gene27369:intron 35.0%
! CACATAATCCTTGAGGTATT+TGG + chr1.2:3120846-3120865 None:intergenic 35.0%
! CCTCTGAAAGTGATGAAATT+TGG - chr1.2:3116803-3116822 MS.gene27369:intron 35.0%
! GCAGTTTTCTCACTTATCAA+AGG - chr1.2:3118831-3118850 MS.gene27369:intron 35.0%
! TAACCGGAACATTTTCAAAG+GGG - chr1.2:3118441-3118460 MS.gene27369:CDS 35.0%
! TCAATCTCATCTTTTGTGAC+AGG + chr1.2:3119122-3119141 None:intergenic 35.0%
! TTAACAGAAAGAGTACACTG+AGG - chr1.2:3120451-3120470 MS.gene27369:intron 35.0%
!! ACACTTAGCTGATGTTTTTG+TGG - chr1.2:3118782-3118801 MS.gene27369:intron 35.0%
!! GTACCTTCTGAAACTACTAA+TGG - chr1.2:3117934-3117953 MS.gene27369:CDS 35.0%
!!! AGATTTTTGGGTAGAAACAG+TGG - chr1.2:3118658-3118677 MS.gene27369:intron 35.0%
!!! GAGCATTTTTAGAGTTGTTG+AGG - chr1.2:3119631-3119650 MS.gene27369:CDS 35.0%
!!! GCAGTAGCTAGACTTTTTTA+AGG - chr1.2:3119969-3119988 MS.gene27369:CDS 35.0%
!!! GCTTATTTTGTTCGGAAATG+TGG - chr1.2:3117745-3117764 MS.gene27369:CDS 35.0%
!!! TCTAAGCTGGTTTTCTTCTT+TGG + chr1.2:3120872-3120891 None:intergenic 35.0%
AAACAACTGGTAAACGGACA+AGG - chr1.2:3118052-3118071 MS.gene27369:CDS 40.0%
AAAGAAGCTGCCTGAAAATG+TGG - chr1.2:3117522-3117541 MS.gene27369:intron 40.0%
AAAGCTCTTAATTGGGTGAC+TGG - chr1.2:3118150-3118169 MS.gene27369:intron 40.0%
AACACACGTCAAACTCTTCA+AGG + chr1.2:3119565-3119584 None:intergenic 40.0%
AAGGGACACAAACAATTCTG+TGG - chr1.2:3117822-3117841 MS.gene27369:CDS 40.0%
ACACAATTACGCACCTTCAA+TGG + chr1.2:3119774-3119793 None:intergenic 40.0%
ACATGTCAATATTAGTGCCG+TGG - chr1.2:3117346-3117365 MS.gene27369:intron 40.0%
AGTCGTTCTCTTTCAAAGAG+TGG + chr1.2:3117645-3117664 None:intergenic 40.0%
AGTTATGATCTTCGTAACGC+CGG - chr1.2:3117318-3117337 MS.gene27369:intron 40.0%
AGTTCTACAGGAAAGAAGAG+GGG - chr1.2:3119704-3119723 MS.gene27369:CDS 40.0%
ATGGGTAAGAATGAATGGCT+TGG - chr1.2:3119464-3119483 MS.gene27369:CDS 40.0%
CACCGTTGTACTTAAAGAAC+AGG + chr1.2:3117669-3117688 None:intergenic 40.0%
CCTGAAAATGTGGTCCTAAA+AGG - chr1.2:3117532-3117551 MS.gene27369:intron 40.0%
CCTTCATCAACACCATTAGA+AGG + chr1.2:3117862-3117881 None:intergenic 40.0%
CGTGAATGAGAATATGAAGG+TGG + chr1.2:3120103-3120122 None:intergenic 40.0%
CTCAGGAGAAAGCTCTTAAT+TGG - chr1.2:3118142-3118161 MS.gene27369:intron 40.0%
GAAAGCAATGGACAAACACT+TGG + chr1.2:3120066-3120085 None:intergenic 40.0%
GAGTTCTACAGGAAAGAAGA+GGG - chr1.2:3119703-3119722 MS.gene27369:CDS 40.0%
GCATCAGACATTAATTGCTC+AGG + chr1.2:3117994-3118013 None:intergenic 40.0%
GTATATAGTTCCTGCGTCTT+TGG + chr1.2:3119086-3119105 None:intergenic 40.0%
GTGGAGTGACATGGAATATA+GGG - chr1.2:3117560-3117579 MS.gene27369:intron 40.0%
TACGCATGGGTAAGAATGAA+TGG - chr1.2:3119459-3119478 MS.gene27369:CDS 40.0%
TCAGCTAAGTGTCACAATGT+TGG + chr1.2:3118774-3118793 None:intergenic 40.0%
TGAGTTCTACAGGAAAGAAG+AGG - chr1.2:3119702-3119721 MS.gene27369:CDS 40.0%
TGGGTAAGAATGAATGGCTT+GGG - chr1.2:3119465-3119484 MS.gene27369:CDS 40.0%
TGTCCGTTTACCAGTTGTTT+GGG + chr1.2:3118052-3118071 None:intergenic 40.0%
TGTCTGTGTTGTGTTTGTGT+TGG - chr1.2:3118936-3118955 MS.gene27369:intron 40.0%
TTGGTACCACATAATCCTTG+AGG + chr1.2:3120853-3120872 None:intergenic 40.0%
TTGTCCGTTTACCAGTTGTT+TGG + chr1.2:3118053-3118072 None:intergenic 40.0%
! ACTTATCAAAGGTGTGTCCA+GGG - chr1.2:3118842-3118861 MS.gene27369:intron 40.0%
! ATTTTACTTCACGCAAGGGT+GGG - chr1.2:3117603-3117622 MS.gene27369:intron 40.0%
! GCACATTTTACTTCACGCAA+GGG - chr1.2:3117599-3117618 MS.gene27369:intron 40.0%
! GTTTCAGAAGGTACAGCAAA+TGG + chr1.2:3117928-3117947 None:intergenic 40.0%
! TTTTACCAGTGTCACATGTC+TGG - chr1.2:3118913-3118932 MS.gene27369:intron 40.0%
!! ACATGGACTTGCTGTTAATG+TGG - chr1.2:3119000-3119019 MS.gene27369:intron 40.0%
!! CCTTCTAATGGTGTTGATGA+AGG - chr1.2:3117859-3117878 MS.gene27369:CDS 40.0%
!! GATTTGTTATGTGAACCGCA+TGG - chr1.2:3118691-3118710 MS.gene27369:intron 40.0%
!!! CCTTTTAGGACCACATTTTC+AGG + chr1.2:3117535-3117554 None:intergenic 40.0%
!!! TCTCATTCACGGGCATTTTT+TGG - chr1.2:3120112-3120131 MS.gene27369:intron 40.0%
AAAAACTCTTCAGGTGGCTC+AGG - chr1.2:3119142-3119161 MS.gene27369:intron 45.0%
AACAATGGAGGACTTACTGG+TGG - chr1.2:3119512-3119531 MS.gene27369:CDS 45.0%
AAGGTACAGCAAATGGCACT+CGG + chr1.2:3117921-3117940 None:intergenic 45.0%
AATGGCCTCCAGTTCTGTTT+GGG + chr1.2:3119756-3119775 None:intergenic 45.0%
AATGTGGTCCTAAAAGGTCC+TGG - chr1.2:3117538-3117557 MS.gene27369:intron 45.0%
ACAATGGAGGACTTACTGGT+GGG - chr1.2:3119513-3119532 MS.gene27369:CDS 45.0%
ACAGACGCAACAGCATAAAC+AGG + chr1.2:3118081-3118100 None:intergenic 45.0%
ACCACGAACGTCTAATTCTC+AGG - chr1.2:3118125-3118144 MS.gene27369:intron 45.0%
AGACATTAATTGCTCAGGGG+TGG + chr1.2:3117989-3118008 None:intergenic 45.0%
AGTTACAAGCAAGCTCTCCT+CGG + chr1.2:3119177-3119196 None:intergenic 45.0%
ATAGGGCTGACAAGTAGAGA+CGG - chr1.2:3117577-3117596 MS.gene27369:intron 45.0%
ATATTCCATGTCACTCCACC+AGG + chr1.2:3117559-3117578 None:intergenic 45.0%
ATCCACCACCTTGTTCAGTT+TGG + chr1.2:3117789-3117808 None:intergenic 45.0%
ATGGGATTACAAAACGGTGG+TGG - chr1.2:3116607-3116626 MS.gene27369:CDS 45.0%
ATGTCATGCAAATGACCAGC+TGG + chr1.2:3119596-3119615 None:intergenic 45.0%
CAAATCAATGTCCTGCCATG+CGG + chr1.2:3118709-3118728 None:intergenic 45.0%
CAACGGTGAATCGTTGTTTG+AGG - chr1.2:3117681-3117700 MS.gene27369:intron 45.0%
CATTCTCCAGGAAAGAAGAG+GGG - chr1.2:3119677-3119696 MS.gene27369:CDS 45.0%
CGTAACAATGGAGGACTTAC+TGG - chr1.2:3119509-3119528 MS.gene27369:CDS 45.0%
CGTCCCAAACAACTGGTAAA+CGG - chr1.2:3118046-3118065 MS.gene27369:CDS 45.0%
CGTTTACCAGTTGTTTGGGA+CGG + chr1.2:3118048-3118067 None:intergenic 45.0%
GAGCCATGTGAAGAACCAAA+CGG + chr1.2:3120540-3120559 None:intergenic 45.0%
GCATTCTCCAGGAAAGAAGA+GGG - chr1.2:3119676-3119695 MS.gene27369:CDS 45.0%
GCCCGTGAATGAGAATATGA+AGG + chr1.2:3120106-3120125 None:intergenic 45.0%
GGAACTCTGTGTTGGACTTT+CGG - chr1.2:3120411-3120430 MS.gene27369:intron 45.0%
GGAGATTACTCCTCTTACTG+CGG - chr1.2:3119652-3119671 MS.gene27369:CDS 45.0%
GGAGTTAAGAGAACACTGAC+CGG - chr1.2:3119725-3119744 MS.gene27369:CDS 45.0%
GGTCTTCCTCTCTTCTTACT+CGG + chr1.2:3118105-3118124 None:intergenic 45.0%
GGTGGAGTGACATGGAATAT+AGG - chr1.2:3117559-3117578 MS.gene27369:intron 45.0%
GTCTGAGGAAGTTACGTTGT+TGG - chr1.2:3119795-3119814 MS.gene27369:CDS 45.0%
GTCTTCCTCTCTTCTTACTC+GGG + chr1.2:3118104-3118123 None:intergenic 45.0%
GTGTGTTTGTTCAAACCAGC+TGG - chr1.2:3119578-3119597 MS.gene27369:CDS 45.0%
TAAGACTATCTGCGTATCCG+TGG - chr1.2:3118300-3118319 MS.gene27369:CDS 45.0%
TCCACCACCTTGTTCAGTTT+GGG + chr1.2:3117788-3117807 None:intergenic 45.0%
TCCTGAGAATTAGACGTTCG+TGG + chr1.2:3118129-3118148 None:intergenic 45.0%
TGAGAATTAGACGTTCGTGG+TGG + chr1.2:3118126-3118145 None:intergenic 45.0%
TGCATTCTCCAGGAAAGAAG+AGG - chr1.2:3119675-3119694 MS.gene27369:CDS 45.0%
TGGATGTTCTAGCAAGGGAA+GGG - chr1.2:3117804-3117823 MS.gene27369:CDS 45.0%
TGGGATTACAAAACGGTGGT+GGG - chr1.2:3116608-3116627 MS.gene27369:CDS 45.0%
TGTGACAGGCCTTCTATTTG+AGG + chr1.2:3119108-3119127 None:intergenic 45.0%
! ATTAGTGCCGTGGTTTGTGT+GGG - chr1.2:3117356-3117375 MS.gene27369:intron 45.0%
! CACTTATCAAAGGTGTGTCC+AGG - chr1.2:3118841-3118860 MS.gene27369:intron 45.0%
! CATTTTACTTCACGCAAGGG+TGG - chr1.2:3117602-3117621 MS.gene27369:intron 45.0%
! GGCACATTTTACTTCACGCA+AGG - chr1.2:3117598-3117617 MS.gene27369:intron 45.0%
! TATTAGTGCCGTGGTTTGTG+TGG - chr1.2:3117355-3117374 MS.gene27369:intron 45.0%
! TGGCCCCTTTGAAAATGTTC+CGG + chr1.2:3118447-3118466 None:intergenic 45.0%
!! TGTGTTGGACTTTCGGTGTT+AGG - chr1.2:3120418-3120437 MS.gene27369:intron 45.0%
!!! AGGCGGCAGCTTATTTTGTT+CGG - chr1.2:3117737-3117756 MS.gene27369:intron 45.0%
!!! ATATTTTGATTAATTAATTT+AGG + chr1.2:3120282-3120301 None:intergenic 5.0%
!!! TTTTTATTAAAATTAATACA+TGG - chr1.2:3118983-3119002 MS.gene27369:intron 5.0%
AAGAGGGGCTTGAGTTCTAC+AGG - chr1.2:3119692-3119711 MS.gene27369:CDS 50.0%
ACAGAACTGGAGGCCATTGA+AGG - chr1.2:3119758-3119777 MS.gene27369:CDS 50.0%
ACCACCTTGTTCAGTTTGGG+CGG + chr1.2:3117785-3117804 None:intergenic 50.0%
ACGAAGACCCACACAAACCA+CGG + chr1.2:3117366-3117385 None:intergenic 50.0%
ACTGTTCCGTCCCAAACAAC+TGG - chr1.2:3118039-3118058 MS.gene27369:CDS 50.0%
AGAATGAAGTCACGCGTGTC+AGG + chr1.2:3118874-3118893 None:intergenic 50.0%
AGACACCAGACATGTGACAC+TGG + chr1.2:3118921-3118940 None:intergenic 50.0%
CAACTGGTAAACGGACAAGG+AGG - chr1.2:3118055-3118074 MS.gene27369:CDS 50.0%
CAATGGCCTCCAGTTCTGTT+TGG + chr1.2:3119757-3119776 None:intergenic 50.0%
CGAGAGTTTCTGTGAGAAGG+CGG - chr1.2:3117720-3117739 MS.gene27369:intron 50.0%
CTTGAGACGATGGAGCAAGA+TGG + chr1.2:3119430-3119449 None:intergenic 50.0%
GAATGAAGTCACGCGTGTCA+GGG + chr1.2:3118873-3118892 None:intergenic 50.0%
GGTGCCTTCTAGATCTAAGC+TGG + chr1.2:3120885-3120904 None:intergenic 50.0%
GTGCGTAATTGTGTCGTCTG+AGG - chr1.2:3119780-3119799 MS.gene27369:CDS 50.0%
GTGGATGTTCTAGCAAGGGA+AGG - chr1.2:3117803-3117822 MS.gene27369:CDS 50.0%
TCTGTCCCGAGTAAGAAGAG+AGG - chr1.2:3118096-3118115 MS.gene27369:CDS 50.0%
TGGCGAGAGTTTCTGTGAGA+AGG - chr1.2:3117717-3117736 MS.gene27369:intron 50.0%
TGTTATGTGAACCGCATGGC+AGG - chr1.2:3118695-3118714 MS.gene27369:intron 50.0%
! GTTTGGGACGGAACAGTTGT+TGG + chr1.2:3118036-3118055 None:intergenic 50.0%
! TCACTCCACCAGGACCTTTT+AGG + chr1.2:3117549-3117568 None:intergenic 50.0%
! TGGTTTGTGTGGGTCTTCGT+AGG - chr1.2:3117366-3117385 MS.gene27369:intron 50.0%
!! AGGTGGTGGATGTTCTAGCA+AGG - chr1.2:3117798-3117817 MS.gene27369:CDS 50.0%
!! CAGCCGTTTGGTTCTTCACA+TGG - chr1.2:3120534-3120553 MS.gene27369:intron 50.0%
!! GGTGGTGGATGTTCTAGCAA+GGG - chr1.2:3117799-3117818 MS.gene27369:CDS 50.0%
AAAGGGCTCTCCAAAGACGC+AGG - chr1.2:3119073-3119092 MS.gene27369:intron 55.0%
AAGGTCCTGGTGGAGTGACA+TGG - chr1.2:3117551-3117570 MS.gene27369:intron 55.0%
ATGGAGGACTTACTGGTGGG+TGG - chr1.2:3119516-3119535 MS.gene27369:CDS 55.0%
CAGTTCTGTTTGGGCAGCAC+CGG + chr1.2:3119747-3119766 None:intergenic 55.0%
CTCAAGCCCCTCTTCTTTCC+TGG + chr1.2:3119686-3119705 None:intergenic 55.0%
CTTACTGCGGTGCATTCTCC+AGG - chr1.2:3119665-3119684 MS.gene27369:CDS 55.0%
GCCCAAACTGAACAAGGTGG+TGG - chr1.2:3117784-3117803 MS.gene27369:CDS 55.0%
GGAGAATGCACCGCAGTAAG+AGG + chr1.2:3119665-3119684 None:intergenic 55.0%
GTGGTCCTAAAAGGTCCTGG+TGG - chr1.2:3117541-3117560 MS.gene27369:intron 55.0%
TGCTGCCCAAACAGAACTGG+AGG - chr1.2:3119748-3119767 MS.gene27369:CDS 55.0%
! TGCGTCTTTGGAGAGCCCTT+TGG + chr1.2:3119074-3119093 None:intergenic 55.0%
! TGGTGGGTGCAGCAGATCTT+GGG - chr1.2:3116624-3116643 MS.gene27369:CDS 55.0%
AGGAGCTGAGACAGACGAGC+AGG - chr1.2:3120754-3120773 MS.gene27369:intron 60.0%
GAAGTCACGCGTGTCAGGGT+CGG + chr1.2:3118869-3118888 None:intergenic 60.0%
GCCGCCCAAACTGAACAAGG+TGG - chr1.2:3117781-3117800 MS.gene27369:CDS 60.0%
GCTGCCGCCCAAACTGAACA+AGG - chr1.2:3117778-3117797 MS.gene27369:CDS 60.0%
GGAGCTGAGACAGACGAGCA+GGG - chr1.2:3120755-3120774 MS.gene27369:intron 60.0%
TTCAGTTTGGGCGGCAGCCT+CGG + chr1.2:3117776-3117795 None:intergenic 60.0%
! AGAGCCCTTTGGAGACGCTG+GGG + chr1.2:3119063-3119082 None:intergenic 60.0%
! GAGAGCCCTTTGGAGACGCT+GGG + chr1.2:3119064-3119083 None:intergenic 60.0%
!! CGGTGCTGCCCAAACAGAAC+TGG - chr1.2:3119745-3119764 MS.gene27369:CDS 60.0%
!! GTGGTGGGTGCAGCAGATCT+TGG - chr1.2:3116623-3116642 MS.gene27369:CDS 60.0%
ACCTGCCCCAGCGTCTCCAA+AGG - chr1.2:3119055-3119074 MS.gene27369:intron 65.0%
CCTGCCCCAGCGTCTCCAAA+GGG - chr1.2:3119056-3119075 MS.gene27369:intron 65.0%
GGCTCAGGCAGCATGTACCG+AGG - chr1.2:3119157-3119176 MS.gene27369:intron 65.0%
TCGGAAATGTGGGCACGCCG+AGG - chr1.2:3117756-3117775 MS.gene27369:CDS 65.0%
! GGAGAGCCCTTTGGAGACGC+TGG + chr1.2:3119065-3119084 None:intergenic 65.0%
! CCCTTTGGAGACGCTGGGGC+AGG + chr1.2:3119059-3119078 None:intergenic 70.0%
CGCGTGTCAGGGTCGGACCC+TGG + chr1.2:3118862-3118881 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 3116607 3120916 3116607 ID=MS.gene27369
chr1.2 mRNA 3116607 3120916 3116607 ID=MS.gene27369.t1;Parent=MS.gene27369
chr1.2 exon 3120797 3120916 3120797 ID=MS.gene27369.t1.exon1;Parent=MS.gene27369.t1
chr1.2 CDS 3120797 3120916 3120797 ID=cds.MS.gene27369.t1;Parent=MS.gene27369.t1
chr1.2 exon 3119352 3120033 3119352 ID=MS.gene27369.t1.exon2;Parent=MS.gene27369.t1
chr1.2 CDS 3119352 3120033 3119352 ID=cds.MS.gene27369.t1;Parent=MS.gene27369.t1
chr1.2 exon 3118291 3118475 3118291 ID=MS.gene27369.t1.exon3;Parent=MS.gene27369.t1
chr1.2 CDS 3118291 3118475 3118291 ID=cds.MS.gene27369.t1;Parent=MS.gene27369.t1
chr1.2 exon 3117744 3118122 3117744 ID=MS.gene27369.t1.exon4;Parent=MS.gene27369.t1
chr1.2 CDS 3117744 3118122 3117744 ID=cds.MS.gene27369.t1;Parent=MS.gene27369.t1
chr1.2 exon 3116607 3116767 3116607 ID=MS.gene27369.t1.exon5;Parent=MS.gene27369.t1
chr1.2 CDS 3116607 3116767 3116607 ID=cds.MS.gene27369.t1;Parent=MS.gene27369.t1
Gene Sequence

>MS.gene27369

ATGGGATTACAAAACGGTGGTGGGTGCAGCAGATCTTGGGAAGAAGACATTTATTGGACCCATTTTCAATTCATTCATTTCACTCAATTTCTTCGCTCCAATGATTTTGCTCAACAATTGGTAAGTTTTCTCTTCTTTCATTTTGTAAATAAAAATTAAACATTTTTTTTTCTTTTTTTTGACAAAAGATGAAACCCCTCTGAAAGTGATGAAATTTGGGTGTTTGTTGCATGCATTTCATTTCATGTTCATACATTTTTTTTCTTCACATTGTTTTAATTTTTTTAATTAATTTAACCACATAATTTTTTTTCTGAAAGTTTCTTTTTTTAACAAGCTGTTGTCAATTTTTTGCAAGAAAGTTTGATCTTTGGATAAGCTATTGTACTGCTGTCAAGTTTTTTTGATGAAAGGTTTGAGCTTTGTATAATCTGTTTTTTTAACTTTTATAAAAATGTGTCTTTTTAAATAATGTTGTAGGTTTTGTGAAATTAGATGTTGATCTGCATTGTGTTTGTTTTTGTGACACTTTTGATTTTAGATTGCATTGTTAAAGATGAACTATGCATTTACATTTTAGGTTATTTTCATGCATGTGTCATGATAGGGTCATGTTTGTGATTTATGTGGTTGATCTTGGGTTGTTATTATGTTATGACAACTATGTAAGTCATATACTTGATATTATGAATGGCTGTTTTTGAATCGGATAGTTATGATCTTCGTAACGCCGGTGTCAACATGTCAATATTAGTGCCGTGGTTTGTGTGGGTCTTCGTAGGTTATAATTGACTTTTAGGCATTTAGTCTACTAAGATGGAAATTCTGCAGCTCAAGCTTGTTGTATTTTATTCTGAAATAGAAGTTTATATTTTGTTTGCAGGCACTTCCCAAAACATTTTCAAACAATGTCAAAAAGAAGCTGCCTGAAAATGTGGTCCTAAAAGGTCCTGGTGGAGTGACATGGAATATAGGGCTGACAAGTAGAGACGGCACATTTTACTTCACGCAAGGGTGGGAACAATTTGTTAAAGACCACTCTTTGAAAGAGAACGACTTCCTGTTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATATTTGATGGCGAGAGTTTCTGTGAGAAGGCGGCAGCTTATTTTGTTCGGAAATGTGGGCACGCCGAGGCTGCCGCCCAAACTGAACAAGGTGGTGGATGTTCTAGCAAGGGAAGGGACACAAACAATTCTGTGGATGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACATGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCATTTGCTGTACCTTCTGAAACTACTAATGGAAAGACTTCTAATGCAGCTGTTGAATCTGCCACCCCTGAGCAATTAATGTCTGATGCAGCAGTCACTGAGACTGAGCCAACAACTGTTCCGTCCCAAACAACTGGTAAACGGACAAGGAGGCCTGTTTATGCTGTTGCGTCTGTCCCGAGTAAGAAGAGAGGAAGACCACCACGAACGTCTAATTCTCAGGAGAAAGCTCTTAATTGGGTGACTGGTATTATTTTTACTTATGAATGACGACGGAAAGAAACATTTAACACTTGTGGTAAAAGCGGTGCACTGATCACATTGTTTTAACTATTGCATAATAAATCATCTATATTATCCAATGAATGCAATAGTTAAGACTATCTGCGTATCCGTGGACCATTATAAACAACAAATGTCACCAAGAAACATATCTGTCTACTGTTTTATCGACATTTCTTTATCTTTTTTTCAGTTGAATGAGTGAAATTTCTTACTAATTATTTTGATTTTGAATAACCGGAACATTTTCAAAGGGGCCAAATTCCAATTTCATGTAACTATATAGGTGATAGGCAAAAGTGGGCGCCGAATGTTTGAATGAATGAGTGGATATTCCATCATTACTTTTTGGAGTCCTCAATTTAATTCTAGACCACAAGAAGCATAGTAAACTTGCTGATACAACAGTAATAAAAATAATCATAATTGGCCACCAAATTTTAGTAATGAGAGATTTTTGGGTAGAAACAGTGGATTTTTGAGAGATTTGTTATGTGAACCGCATGGCAGGACATTGATTTGATAATAATTTGACATTATTGTTTATTGTGTGCTTGTTTTAGTCCAACATTGTGACACTTAGCTGATGTTTTTGTGGAATCAATTAAAGAAGCAAATTAAAAAGCAGTTTTCTCACTTATCAAAGGTGTGTCCAGGGTCCGACCCTGACACGCGTGACTTCATTCTATAAATTCATTTTCTCAAATTTTACCAGTGTCACATGTCTGGTGTCTGTGTTGTGTTTGTGTTGGCTCTTCATAACTTTTTTTTGATTATTTTTATTAAAATTAATACATGGACTTGCTGTTAATGTGGTAACTTATTTTGATCATTTTTTTAGATGCTGAACCTGCCCCAGCGTCTCCAAAGGGCTCTCCAAAGACGCAGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAGATGAGATTGAAAAAACTCTTCAGGTGGCTCAGGCAGCATGTACCGAGGAGAGCTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTTCGTGGTAAACTACTTCTTCCCTTACTTTACTTTTTTAACTTGTTTTTAATCTTAATATATTATGCTAAATAAATGCCTCATTGTGTTTTTATTTTTATTTTTATAATTCCTGCATTTTTAACTTTATTATACATTGTTACTTACTAATTGTATGAACTTTTTTTGTTACTAGTCATTCCCTAATAAGTGGATACTAAACCATCTTGCTCCATCGTCTCAAGATGTGATATTACGCATGGGTAAGAATGAATGGCTTGGGAAATACTGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAGTATTTTGCGCTCGACAACAACCTTGAAGAGTTTGACGTGTGTTTGTTCAAACCAGCTGGTCATTTGCATGACATATTGATCTTAGAAATGAGCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTCCAGGAAAGAAGAGGGGCTTGAGTTCTACAGGAAAGAAGAGGGGAGTTAAGAGAACACTGACCGGTGCTGCCCAAACAGAACTGGAGGCCATTGAAGGTGCGTAATTGTGTCGTCTGAGGAAGTTACGTTGTTGGAATTATGCAATAGTATATGTTAACAGTTGTGTTAGGTCTGCAGACTAAGTTGCGTTATATCGTTTTATGTCTATGTTTTGGATGTTATGATGGATTGTTTAACTTGTCTAATCTTCTACCTAGGTAATTCACTATGTGTAAACTTTCTATTGCAGTAGCTAGACTTTTTTAAGGTTAAAGTTTGAATTGATTTATCCACCCTAATTATTTTGCAAAACTGAATTTCAACATAAAAGAAATTTTGACCAAGTGTTTGTCCATTGCTTTCTTGAAACATGGACACCACCTTCATATTCTCATTCACGGGCATTTTTTGGCAATTTTTTTGTTTTTGAAATCAAACAAAGTTTAATAGAACGTGTATGAAAGTAATATGCAAAATAAAAAGTGTACTCCATTTGTAATGCAGTATTTACAATTACGTTTGTTTGACAGCAAGTATTTTTACAGTTAAGTTGATACCTAAATTAATTAATCAAAATATAAACAAAACAACAAATTCTGTAGTAATTTGATGTTTTTTGTTGTTTGCAATGCTTGATAACTAAAATCATGTAAAACAAGGAATTAATGCTGACATGAATTTCTTTATTGGAACTCTGTGTTGGACTTTCGGTGTTAGGTATTAAAAAATTAACAGAAAGAGTACACTGAGGTTATCATAAAATTAATATGCATTTAGTAGTGTGTTAGGAACATATATAAAACATTAAAAACAGCCGTTTGGTTCTTCACATGGCTCTTTCATTGTTAATTTATTGTTTCTGTTATCCCAATTAAATAGAGGCACGCTAATTCACAACAAAGCAAGAGACACTCATTCCTCATGTAATAAAATTATTCATTCTCTTAAAAATTGAACTAAATATGCATTTTGCTGATGTAACATGAAAGTTATGTATGAAGTTATTAATTGTACATTATTTTTATGGATCAAGGAGCTGAGACAGACGAGCAGGGACTGCAAGCTGAAGATGATGAACTCTTATCTCAAATACGGGCCAAAAGAAACATAGTAAAATCATCCAAATACCTCAAGGATTATGTGGTACCAAAGAAGAAAACCAGCTTAGATCTAGAAGGCACCTCTGCTAGCTGA
Protein sequence

>MS.gene27369.t1

MGLQNGGGCSRSWEEDIYWTHFQFIHFTQFLRSNDFAQQLALPKTFSNNVKKKLPENVVLKGPGGVTWNIGLTSRDGTFYFTQGWEQFVKDHSLKENDFLFFKYNGESLFEVLIFDGESFCEKAAAYFVRKCGHAEAAAQTEQGGGCSSKGRDTNNSVDEVNTPSNGVDEGVSHEKSLHLNSIRVPFAVPSETTNGKTSNAAVESATPEQLMSDAAVTETEPTTVPSQTTGKRTRRPVYAVASVPSKKRGRPPRTSNSQEKALNWVTDAEPAPASPKGSPKTQELYTSNRRPVTKDEIEKTLQVAQAACTEESLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRVVEEITPLTAVHSPGKKRGLSSTGKKRGVKRTLTGAAQTELEAIEGAETDEQGLQAEDDELLSQIRAKRNIVKSSKYLKDYVVPKKKTSLDLEGTSAS