AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053122


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053122.t1 MTR_4g009100 93.176 425 21 4 1 419 1 423 0.0 744
MS.gene053122.t1 MTR_4g009100 92.077 366 21 4 1 360 1 364 0.0 619
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053122.t1 AT1G15810 62.019 208 69 3 199 405 219 417 4.39e-81 256
MS.gene053122.t1 AT1G80620 41.355 428 187 13 16 407 15 414 5.85e-81 255

Find 108 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGCCAATCTCGTTTC+AGG 0.197152 4.1:+86674051 MS.gene053122:CDS
TCAGCAGAGGACATGTTATC+TGG 0.221149 4.1:-86675994 None:intergenic
TATGTTGGGGTTTATTTAAT+TGG 0.228847 4.1:-86678542 None:intergenic
TTTGCTCAAGATATCATCTT+TGG 0.250670 4.1:-86673972 None:intergenic
GGAATCAGGTGCGGTGGTTT+TGG 0.276997 4.1:-86674011 None:intergenic
CGGGCTTTATAAGTATATTC+TGG 0.291890 4.1:-86678496 None:intergenic
TTAGCCAAGGTGAATGATTC+AGG 0.297727 4.1:+86674310 MS.gene053122:CDS
GTGAATGATTCAGGGAGTTT+TGG 0.301942 4.1:+86674319 MS.gene053122:CDS
CGTATCCGAAGCGGAATCTT+TGG 0.307010 4.1:-86674101 None:intergenic
TTATATATGCATGGTGAATT+AGG 0.318193 4.1:+86674352 MS.gene053122:CDS
TACTAACATGAAGCTTTATT+AGG 0.327657 4.1:-86674574 None:intergenic
TTGTTACCGGATTCGATGTT+TGG 0.341309 4.1:+86674268 MS.gene053122:CDS
AGTGGTGGAGAGTAGGGTTT+GGG 0.342066 4.1:-86673791 None:intergenic
CGATGTTTGGGAAGGAGATA+AGG 0.345042 4.1:+86674281 MS.gene053122:CDS
AGCTTGGAGTTCCACCAATC+AGG 0.379248 4.1:-86675431 None:intergenic
AGGAGAAGGTGTTGTGTTTG+AGG 0.387280 4.1:-86673924 None:intergenic
TAAAGCCCGGACTGGTAAAT+CGG 0.389131 4.1:+86678510 MS.gene053122:CDS
TCTGACTTGTTGTAAGGATT+CGG 0.391613 4.1:-86673879 None:intergenic
AATATGTCAGCGGGGAATAG+TGG 0.398052 4.1:+86674238 MS.gene053122:CDS
TGATGGAGTGGTGGAGAGTA+GGG 0.398977 4.1:-86673797 None:intergenic
CTATTCCCCGCTGACATATT+CGG 0.403136 4.1:-86674235 None:intergenic
TAGTGGGACGAGTTTGTTAC+CGG 0.405301 4.1:+86674255 MS.gene053122:CDS
GAGTGGTGGAGAGTAGGGTT+TGG 0.415098 4.1:-86673792 None:intergenic
GTGATGGAGTGGTGGAGAGT+AGG 0.417770 4.1:-86673798 None:intergenic
TGCTTTAGGATGTGCATTCT+CGG 0.419325 4.1:+86678362 MS.gene053122:intron
TGTGGCTCTGCTCGTGTTCA+AGG 0.419529 4.1:+86676075 MS.gene053122:CDS
TAAAGAGCATCTTGTTGAAA+AGG 0.423407 4.1:+86675470 MS.gene053122:CDS
CTTAGAGAGAACAAAACAAT+AGG 0.423531 4.1:-86678455 None:intergenic
CTCAAGTGAAAGGAAAAGAT+TGG 0.434328 4.1:+86674398 MS.gene053122:CDS
GTTAATAGATCATCGGAATC+AGG 0.434445 4.1:-86674025 None:intergenic
TGGAGGTGGAGAAGAGGTGA+TGG 0.434925 4.1:-86673814 None:intergenic
AAAACTACCATCGGTGGTGG+TGG 0.439256 4.1:+86674127 MS.gene053122:CDS
GTTGAAGAAAGTGAGGGAAA+TGG 0.440483 4.1:+86674447 MS.gene053122:CDS
TGTTACCGGATTCGATGTTT+GGG 0.445980 4.1:+86674269 MS.gene053122:CDS
TGATGATAGATGCTTAATCT+TGG 0.455799 4.1:-86676292 None:intergenic
GATGTTTGGGAAGGAGATAA+GGG 0.455958 4.1:+86674282 MS.gene053122:CDS
GGTCTCCACCTCGGCGTCAC+CGG 0.457444 4.1:-86674214 None:intergenic
CTCTTCTCCACCTCCAACTC+CGG 0.457603 4.1:+86673821 MS.gene053122:CDS
ACCGTCATTGTCACCGGAGT+TGG 0.459507 4.1:-86673834 None:intergenic
GTTGAACACTTTATTTGTAT+CGG 0.460097 4.1:-86674503 None:intergenic
AACTACCATCGGTGGTGGTG+GGG 0.461512 4.1:+86674129 MS.gene053122:CDS
GGAGGCTTTGACAAGTAGCT+TGG 0.462551 4.1:-86675447 None:intergenic
GAAGGTGTTGTGTTTGAGGT+TGG 0.464761 4.1:-86673920 None:intergenic
ATTGATATGTTGTCCCTGAT+TGG 0.468754 4.1:+86675417 MS.gene053122:CDS
TACATATCCTGAAACGAGAT+TGG 0.469151 4.1:-86674058 None:intergenic
ACTACCATCGGTGGTGGTGG+GGG 0.471057 4.1:+86674130 MS.gene053122:CDS
TGAGCTTCTGACTTGTTGTA+AGG 0.477275 4.1:-86673885 None:intergenic
AAACTACCATCGGTGGTGGT+GGG 0.493683 4.1:+86674128 MS.gene053122:CDS
TGCGAGGGAGAGAGAGGAGA+AGG 0.494280 4.1:-86673938 None:intergenic
TCCTTCCCAAACATCGAATC+CGG 0.494755 4.1:-86674274 None:intergenic
GTCGCCACCGTCATTGTCAC+CGG 0.497517 4.1:-86673840 None:intergenic
GTGAGAGGTTGAAGAAAGTG+AGG 0.507809 4.1:+86674440 MS.gene053122:CDS
GTCATTGTCACCGGAGTTGG+AGG 0.510211 4.1:-86673831 None:intergenic
CAGCAGAGGACATGTTATCT+GGG 0.517850 4.1:-86675993 None:intergenic
ATTGTCACCGGAGTTGGAGG+TGG 0.527310 4.1:-86673828 None:intergenic
AAAGCCCGGACTGGTAAATC+GGG 0.529645 4.1:+86678511 MS.gene053122:CDS
GTGGAGAAGAGGTGATGGAG+TGG 0.532903 4.1:-86673809 None:intergenic
ATATGTCAGCGGGGAATAGT+GGG 0.534656 4.1:+86674239 MS.gene053122:CDS
TCAACAAGATGCTCTTTAGG+AGG 0.535728 4.1:-86675465 None:intergenic
TGGAGACCGAATATGTCAGC+GGG 0.537439 4.1:+86674229 MS.gene053122:CDS
GAGAAGAGGTGATGGAGTGG+TGG 0.540124 4.1:-86673806 None:intergenic
CTTCTGAGTTAATAGATCAT+CGG 0.542609 4.1:-86674032 None:intergenic
TAGGATGTGCATTCTCGGAA+AGG 0.545917 4.1:+86678367 MS.gene053122:intron
GCTTGGAGTTCCACCAATCA+GGG 0.546915 4.1:-86675430 None:intergenic
TGTAAGGATTCGGAGAAGGA+GGG 0.550289 4.1:-86673869 None:intergenic
ATCATCAGTTCTACACAAGA+AGG 0.554571 4.1:+86676308 MS.gene053122:CDS
CTTCAACCTCTCACTCAACT+CGG 0.554778 4.1:-86674431 None:intergenic
GTCACCCGATTTACCAGTCC+GGG 0.556020 4.1:-86678515 None:intergenic
CGATTGCCGAGTTGAGTGAG+AGG 0.557053 4.1:+86674425 MS.gene053122:CDS
TTGTAAGGATTCGGAGAAGG+AGG 0.557469 4.1:-86673870 None:intergenic
CGGAGTTGGAGGTGGAGAAG+AGG 0.562478 4.1:-86673820 None:intergenic
ACCGGATTCGATGTTTGGGA+AGG 0.563280 4.1:+86674273 MS.gene053122:CDS
TGATAGCAATGGTTCAAAAG+AGG 0.564231 4.1:+86678392 MS.gene053122:CDS
TTGTTGTAAGGATTCGGAGA+AGG 0.565751 4.1:-86673873 None:intergenic
TAGCCAAGGTGAATGATTCA+GGG 0.570378 4.1:+86674311 MS.gene053122:CDS
CGTCACCCGATTTACCAGTC+CGG 0.571673 4.1:-86678516 None:intergenic
TCGATCCAAAGATTCCGCTT+CGG 0.574006 4.1:+86674096 MS.gene053122:CDS
ATTGGACTTGATGTGATTCG+TGG 0.579464 4.1:+86674154 MS.gene053122:CDS
AAGATGTCCGAGTCAGATTG+TGG 0.579927 4.1:+86676057 MS.gene053122:CDS
CAGAATATACTTATAAAGCC+CGG 0.580244 4.1:+86678497 MS.gene053122:CDS
TGAGAGGTTGAAGAAAGTGA+GGG 0.583053 4.1:+86674441 MS.gene053122:CDS
TATACTTATAAAGCCCGGAC+TGG 0.588412 4.1:+86678502 MS.gene053122:CDS
TTGGGAAGGAGATAAGGGAT+AGG 0.591410 4.1:+86674287 MS.gene053122:CDS
AAATTGAGACCTCAAGTGAA+AGG 0.593143 4.1:+86674388 MS.gene053122:CDS
ATTGAAAATTGAGCTGACAA+AGG 0.594958 4.1:+86676020 MS.gene053122:CDS
AATCCCAGTCGGTTCTTCTG+AGG 0.595536 4.1:-86678432 None:intergenic
TCGAAAACTACCATCGGTGG+TGG 0.596020 4.1:+86674124 MS.gene053122:CDS
AATACCTCAGAAGAACCGAC+TGG 0.596907 4.1:+86678428 MS.gene053122:CDS
GATAAGGGATAGGTTAGCCA+AGG 0.602083 4.1:+86674297 MS.gene053122:CDS
TCCAACTCCGGTGACAATGA+CGG 0.604175 4.1:+86673833 MS.gene053122:CDS
GATATGTTGTCCCTGATTGG+TGG 0.604709 4.1:+86675420 MS.gene053122:CDS
GACATATTCGGTCTCCACCT+CGG 0.607216 4.1:-86674223 None:intergenic
AGACGCCGGTGACGCCGAGG+TGG 0.621545 4.1:+86674209 MS.gene053122:CDS
AGCAGAGCCACAATCTGACT+CGG 0.621918 4.1:-86676064 None:intergenic
ATCATCGGAATCAGGTGCGG+TGG 0.623646 4.1:-86674017 None:intergenic
ACTCCCTGAATCATTCACCT+TGG 0.637166 4.1:-86674314 None:intergenic
ACTGTTAGGTTATATATGCA+TGG 0.640796 4.1:+86674343 MS.gene053122:CDS
TCGGAAAGGTCTGATAGCAA+TGG 0.642289 4.1:+86678381 MS.gene053122:CDS
ATCAGACGCCGGTGACGCCG+AGG 0.642782 4.1:+86674206 MS.gene053122:CDS
GATACGTCGAAAACTACCAT+CGG 0.667277 4.1:+86674118 MS.gene053122:CDS
ATACCTCAGAAGAACCGACT+GGG 0.671133 4.1:+86678429 MS.gene053122:CDS
TAGATCATCGGAATCAGGTG+CGG 0.679666 4.1:-86674020 None:intergenic
AAATTCGACGAATCAGACGC+CGG 0.695623 4.1:+86674195 MS.gene053122:CDS
ACGTCGAAAACTACCATCGG+TGG 0.701049 4.1:+86674121 MS.gene053122:CDS
GTGGAGACCGAATATGTCAG+CGG 0.711187 4.1:+86674228 MS.gene053122:CDS
AAAACAATAGGAATCCCAGT+CGG 0.725069 4.1:-86678443 None:intergenic
AACTCCGGTGACAATGACGG+TGG 0.731984 4.1:+86673836 MS.gene053122:CDS
GGAGACCGAATATGTCAGCG+GGG 0.770843 4.1:+86674230 MS.gene053122:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTAATGTTTGACTA+TGG - chr4.1:86675706-86675725 None:intergenic 15.0%
!! TAAAATAAATCTATTGTAGA+TGG + chr4.1:86675278-86675297 MS.gene053122:intron 15.0%
!! TATATGAAAAATATAAGTGA+TGG + chr4.1:86675373-86675392 MS.gene053122:intron 15.0%
!!! TCTATTTTTAATCATGTAAT+TGG - chr4.1:86677837-86677856 None:intergenic 15.0%
!!! TTCTTTTAAATCTAGTATAA+CGG + chr4.1:86676504-86676523 MS.gene053122:intron 15.0%
!!! TTTTTGAATTTTAAGTTTGT+TGG - chr4.1:86677611-86677630 None:intergenic 15.0%
!! AAAAAAATTAGTACTAGAGT+TGG - chr4.1:86676633-86676652 None:intergenic 20.0%
!! ACTGGTAAAGATTAAAAATA+AGG - chr4.1:86677020-86677039 None:intergenic 20.0%
!! ACTTTATAAATATTCTGCAA+AGG + chr4.1:86676826-86676845 MS.gene053122:intron 20.0%
!! ATGAACATAAGAATTTAATC+AGG - chr4.1:86678054-86678073 None:intergenic 20.0%
!! ATGACCAAAATATATTTGTT+TGG - chr4.1:86675052-86675071 None:intergenic 20.0%
!! CCAATTCAAAATTATATTGA+AGG - chr4.1:86678118-86678137 None:intergenic 20.0%
!! CTGGTAAAGATTAAAAATAA+GGG - chr4.1:86677019-86677038 None:intergenic 20.0%
!! GAATATTTATAAAGTTGTAC+AGG - chr4.1:86676821-86676840 None:intergenic 20.0%
!! GTAATAGCTTAAAAAAAAGT+GGG - chr4.1:86675743-86675762 None:intergenic 20.0%
!! TAAAGTATAGCAAACATATT+TGG - chr4.1:86676162-86676181 None:intergenic 20.0%
!! TAATAGCTTAAAAAAAAGTG+GGG - chr4.1:86675742-86675761 None:intergenic 20.0%
!! TCATAAAAATCATAGCTTAA+AGG + chr4.1:86677492-86677511 MS.gene053122:intron 20.0%
!! TCTTAGTAAAAGAATATTGT+TGG + chr4.1:86677663-86677682 MS.gene053122:intron 20.0%
!! TGAACATAAGAATTTAATCA+GGG - chr4.1:86678053-86678072 None:intergenic 20.0%
!! TGTAATAGCTTAAAAAAAAG+TGG - chr4.1:86675744-86675763 None:intergenic 20.0%
!! TGTTCGATATTAAATTTAGA+CGG + chr4.1:86676134-86676153 MS.gene053122:intron 20.0%
!! TTATGAGAAATGAAATACTA+GGG - chr4.1:86677920-86677939 None:intergenic 20.0%
!! TTTATCATTGATACTAGATA+AGG + chr4.1:86674871-86674890 MS.gene053122:intron 20.0%
!!! AACAAATATATTTTGGTCAT+AGG + chr4.1:86675052-86675071 MS.gene053122:intron 20.0%
!!! ACAAATATATTTTGGTCATA+GGG + chr4.1:86675053-86675072 MS.gene053122:intron 20.0%
!!! ACAATATTCTTTTACTAAGA+TGG - chr4.1:86677663-86677682 None:intergenic 20.0%
!!! AGCATTTTAGATTAATTGAA+TGG - chr4.1:86675661-86675680 None:intergenic 20.0%
!!! AGTGTTTGGAATATATTAAT+AGG + chr4.1:86676207-86676226 MS.gene053122:intron 20.0%
!!! CCTTCAATATAATTTTGAAT+TGG + chr4.1:86678115-86678134 MS.gene053122:intron 20.0%
!!! GAAAATTGTTTTAGTTAACA+TGG - chr4.1:86677229-86677248 None:intergenic 20.0%
!!! TACTAATTTTCTTTCATGAT+TGG + chr4.1:86676180-86676199 MS.gene053122:intron 20.0%
!!! TGTTAACTAAAACAATTTTC+AGG + chr4.1:86677229-86677248 MS.gene053122:intron 20.0%
! AAAATTACAACTTCCAACAT+AGG - chr4.1:86677963-86677982 None:intergenic 25.0%
! AACAATGTTTGTACATCAAA+TGG - chr4.1:86676428-86676447 None:intergenic 25.0%
! AACATACAAATCTTCTATTG+AGG - chr4.1:86676402-86676421 None:intergenic 25.0%
! AATATAGAGTTATAAACCAC+AGG - chr4.1:86675616-86675635 None:intergenic 25.0%
! AATATCATTCACATCGAAAT+AGG + chr4.1:86677808-86677827 MS.gene053122:intron 25.0%
! ATATAGCATAAATTGAAGCA+AGG - chr4.1:86678191-86678210 None:intergenic 25.0%
! ATCACAGAAAGAATTTAATC+AGG - chr4.1:86678343-86678362 None:intergenic 25.0%
! ATCATCGTATCATAACTAAA+AGG - chr4.1:86674654-86674673 None:intergenic 25.0%
! ATTGACAACACTTTATACTA+AGG - chr4.1:86675129-86675148 None:intergenic 25.0%
! ATTGGGTATTATTATGAAGA+TGG + chr4.1:86677441-86677460 MS.gene053122:intron 25.0%
! CTATGTTTGGTAAAAAATAG+TGG + chr4.1:86674816-86674835 MS.gene053122:intron 25.0%
! CTTATGAGAAATGAAATACT+AGG - chr4.1:86677921-86677940 None:intergenic 25.0%
! GGTTAATTCAAAATATCAAG+CGG - chr4.1:86675853-86675872 None:intergenic 25.0%
! GTTCGATATTAAATTTAGAC+GGG + chr4.1:86676135-86676154 MS.gene053122:intron 25.0%
! TATCTCAGACAAATTAAGAT+GGG + chr4.1:86677260-86677279 MS.gene053122:intron 25.0%
! TCACAGAAAGAATTTAATCA+GGG - chr4.1:86678342-86678361 None:intergenic 25.0%
! TGATTAAAAATAGACTGACA+TGG + chr4.1:86677843-86677862 MS.gene053122:intron 25.0%
! TTATATATGCATGGTGAATT+AGG + chr4.1:86674352-86674371 MS.gene053122:CDS 25.0%
! TTATTGTTACTCATGTCTAT+GGG - chr4.1:86677550-86677569 None:intergenic 25.0%
! TTGCTACATAAACAATATGT+TGG - chr4.1:86677196-86677215 None:intergenic 25.0%
! TTGGGTATTATTATGAAGAT+GGG + chr4.1:86677442-86677461 MS.gene053122:intron 25.0%
! TTTAATCTTTACCAGTTAAC+TGG + chr4.1:86677024-86677043 MS.gene053122:intron 25.0%
!! AAAGAATATTGTTGGTAGAT+TGG + chr4.1:86677671-86677690 MS.gene053122:intron 25.0%
!! AGTTCATCATTAGTTTAACA+TGG + chr4.1:86677995-86678014 MS.gene053122:intron 25.0%
!! ATTTTACAGACTATGAAAAC+TGG - chr4.1:86676543-86676562 None:intergenic 25.0%
!! GTTCATCATTAGTTTAACAT+GGG + chr4.1:86677996-86678015 MS.gene053122:intron 25.0%
!! GTTGAACACTTTATTTGTAT+CGG - chr4.1:86674506-86674525 None:intergenic 25.0%
!! TGTGCCAAACAAATATATTT+TGG + chr4.1:86675045-86675064 MS.gene053122:intron 25.0%
!! TTCATCATTAGTTTAACATG+GGG + chr4.1:86677997-86678016 MS.gene053122:intron 25.0%
!!! AATTTTCAATTTTTCAGCAG+AGG - chr4.1:86676010-86676029 None:intergenic 25.0%
!!! ACAAGTTTAAGCTTTTTTAC+TGG - chr4.1:86675015-86675034 None:intergenic 25.0%
!!! AGTATAAAGTGTTGTCAATT+AGG + chr4.1:86675130-86675149 MS.gene053122:intron 25.0%
!!! CAAATATATTTTGGTCATAG+GGG + chr4.1:86675054-86675073 MS.gene053122:intron 25.0%
!!! CTCATAGTTGATAAATTAGT+GGG + chr4.1:86674916-86674935 MS.gene053122:intron 25.0%
!!! GGCACATTTTGTTTTTTTAA+TGG + chr4.1:86675914-86675933 MS.gene053122:intron 25.0%
!!! GTATAAAGTGTTGTCAATTA+GGG + chr4.1:86675131-86675150 MS.gene053122:intron 25.0%
!!! TACTAACATGAAGCTTTATT+AGG - chr4.1:86674577-86674596 None:intergenic 25.0%
!!! TATAAAGTGTTGTCAATTAG+GGG + chr4.1:86675132-86675151 MS.gene053122:intron 25.0%
!!! TTGTTTTGCAATACATGTTT+AGG + chr4.1:86674793-86674812 MS.gene053122:intron 25.0%
AATCAACAAATAGCAAGAGA+TGG - chr4.1:86675797-86675816 None:intergenic 30.0%
AATTCTTTCTGTGATGCTTT+AGG + chr4.1:86678348-86678367 MS.gene053122:intron 30.0%
ACTGTTAGGTTATATATGCA+TGG + chr4.1:86674343-86674362 MS.gene053122:CDS 30.0%
ACTTGATGAATTTCATCATG+AGG - chr4.1:86675768-86675787 None:intergenic 30.0%
AGACAAATTAAGATGGGTAT+TGG + chr4.1:86677266-86677285 MS.gene053122:intron 30.0%
ATACATGTTTAGGCTATGTT+TGG + chr4.1:86674803-86674822 MS.gene053122:intron 30.0%
ATCATTGTATATTGCATCTC+TGG + chr4.1:86675232-86675251 MS.gene053122:intron 30.0%
ATCGGATATACTAACTCAAA+AGG - chr4.1:86674724-86674743 None:intergenic 30.0%
ATTGAAAATTGAGCTGACAA+AGG + chr4.1:86676020-86676039 MS.gene053122:CDS 30.0%
CAACATAGAGTGGAAATATT+AGG - chr4.1:86675958-86675977 None:intergenic 30.0%
CAGAATATACTTATAAAGCC+CGG + chr4.1:86678497-86678516 MS.gene053122:CDS 30.0%
CTTAGAGAGAACAAAACAAT+AGG - chr4.1:86678458-86678477 None:intergenic 30.0%
CTTCTGAGTTAATAGATCAT+CGG - chr4.1:86674035-86674054 None:intergenic 30.0%
GAATTTAATCAGGGATCAAA+TGG - chr4.1:86678044-86678063 None:intergenic 30.0%
GACAAATTAAGATGGGTATT+GGG + chr4.1:86677267-86677286 MS.gene053122:intron 30.0%
GTATCTCAGACAAATTAAGA+TGG + chr4.1:86677259-86677278 MS.gene053122:intron 30.0%
GTTATTGTTACTCATGTCTA+TGG - chr4.1:86677551-86677570 None:intergenic 30.0%
TATTTGAATGTGCTTCTGTT+AGG + chr4.1:86676579-86676598 MS.gene053122:intron 30.0%
TCGGATATACTAACTCAAAA+GGG - chr4.1:86674723-86674742 None:intergenic 30.0%
TGATGATAGATGCTTAATCT+TGG - chr4.1:86676295-86676314 None:intergenic 30.0%
TGTGAACAAAATCTTAACCT+CGG + chr4.1:86678092-86678111 MS.gene053122:intron 30.0%
TTCCAACATAGGAACTAAAA+TGG - chr4.1:86677952-86677971 None:intergenic 30.0%
TTTATCTCTCTGAACTTACA+GGG - chr4.1:86677050-86677069 None:intergenic 30.0%
TTTGCTCAAGATATCATCTT+TGG - chr4.1:86673975-86673994 None:intergenic 30.0%
! AGCTATGATTTTTATGACTC+TGG - chr4.1:86677489-86677508 None:intergenic 30.0%
! GAAAAATATAAGTGATGGTG+TGG + chr4.1:86675378-86675397 MS.gene053122:intron 30.0%
! GTTTGGTAAAAAATAGTGGA+TGG + chr4.1:86674820-86674839 MS.gene053122:intron 30.0%
! TAGTCTGTAAAATTTTCGTC+TGG + chr4.1:86676550-86676569 MS.gene053122:intron 30.0%
! TCATAACCAGTGTTGTTAAA+TGG + chr4.1:86676682-86676701 MS.gene053122:intron 30.0%
! TCTTTTTATAAAAGCTTCCG+AGG + chr4.1:86676936-86676955 MS.gene053122:intron 30.0%
! TTTTATCTCTCTGAACTTAC+AGG - chr4.1:86677051-86677070 None:intergenic 30.0%
! TTTTCAACAAGATGCTCTTT+AGG - chr4.1:86675471-86675490 None:intergenic 30.0%
!! ACAAATTTCTGAGGTTATAG+AGG - chr4.1:86675092-86675111 None:intergenic 30.0%
!! ATAAATTAGTGGGTTGAATG+GGG + chr4.1:86674926-86674945 MS.gene053122:intron 30.0%
!! GATAAATTAGTGGGTTGAAT+GGG + chr4.1:86674925-86674944 MS.gene053122:intron 30.0%
!! GATATTTTGAATTAACCTCG+TGG + chr4.1:86675856-86675875 MS.gene053122:intron 30.0%
!! GCTCATAGTTGATAAATTAG+TGG + chr4.1:86674915-86674934 MS.gene053122:intron 30.0%
!! TAAAGAGCATCTTGTTGAAA+AGG + chr4.1:86675470-86675489 MS.gene053122:CDS 30.0%
!! TGATAAATTAGTGGGTTGAA+TGG + chr4.1:86674924-86674943 MS.gene053122:intron 30.0%
!! TGTTTTGTTCTCTCTAAGTT+AGG + chr4.1:86678460-86678479 MS.gene053122:CDS 30.0%
!! TTGCTATTTGTTGATTGCTT+TGG + chr4.1:86675801-86675820 MS.gene053122:intron 30.0%
!!! GATTTTTTGACAACCACTAT+AGG + chr4.1:86676718-86676737 MS.gene053122:intron 30.0%
!!! GTGTTTATATGACGGATTTT+TGG + chr4.1:86676767-86676786 MS.gene053122:intron 30.0%
AAAACAATAGGAATCCCAGT+CGG - chr4.1:86678446-86678465 None:intergenic 35.0%
AAATATTCTGCAAAGGAGAC+TGG + chr4.1:86676833-86676852 MS.gene053122:intron 35.0%
AAATTGAGACCTCAAGTGAA+AGG + chr4.1:86674388-86674407 MS.gene053122:CDS 35.0%
AATAGTAATACTAGCCAGAC+CGG - chr4.1:86678315-86678334 None:intergenic 35.0%
AATATTCTGCAAAGGAGACT+GGG + chr4.1:86676834-86676853 MS.gene053122:intron 35.0%
AATTCATGTGACTAGTGATG+AGG - chr4.1:86678240-86678259 None:intergenic 35.0%
ACATAGGAACTAAAATGGAG+TGG - chr4.1:86677947-86677966 None:intergenic 35.0%
ACTGACATGGCTTAATAGAT+GGG + chr4.1:86677856-86677875 MS.gene053122:intron 35.0%
ATAGATGGGAATGTGTTTAC+AGG + chr4.1:86677870-86677889 MS.gene053122:intron 35.0%
ATAGGTCCACTATTGTTTAG+TGG + chr4.1:86675157-86675176 MS.gene053122:intron 35.0%
ATATTCAGTGATGTCAATCG+CGG - chr4.1:86675212-86675231 None:intergenic 35.0%
ATCATCAGTTCTACACAAGA+AGG + chr4.1:86676308-86676327 MS.gene053122:CDS 35.0%
ATCTCAATCTCAATCTCACT+TGG + chr4.1:86677146-86677165 MS.gene053122:intron 35.0%
ATTCATGTGACTAGTGATGA+GGG - chr4.1:86678239-86678258 None:intergenic 35.0%
ATTGATATGTTGTCCCTGAT+TGG + chr4.1:86675417-86675436 MS.gene053122:CDS 35.0%
ATTGTTTATGTAGCAAGCTC+TGG + chr4.1:86677200-86677219 MS.gene053122:intron 35.0%
CAAAATTATATTGAAGGCCG+AGG - chr4.1:86678112-86678131 None:intergenic 35.0%
CAATTGTAGCTATCAGATGA+AGG - chr4.1:86675574-86675593 None:intergenic 35.0%
CCAATTCCACTAAACAATAG+TGG - chr4.1:86675166-86675185 None:intergenic 35.0%
CCACTATTGTTTAGTGGAAT+TGG + chr4.1:86675163-86675182 MS.gene053122:intron 35.0%
CTCAAGTGAAAGGAAAAGAT+TGG + chr4.1:86674398-86674417 MS.gene053122:CDS 35.0%
CTTTATACTAAGGCTCTGTT+TGG - chr4.1:86675119-86675138 None:intergenic 35.0%
GATTGAGATTGAGATTGAGA+TGG - chr4.1:86677141-86677160 None:intergenic 35.0%
GTTAATAGATCATCGGAATC+AGG - chr4.1:86674028-86674047 None:intergenic 35.0%
TACATATCCTGAAACGAGAT+TGG - chr4.1:86674061-86674080 None:intergenic 35.0%
TATTCATTGCACACTAGGAT+GGG - chr4.1:86678215-86678234 None:intergenic 35.0%
TCTAGTAGTGTTTGAGCTTA+TGG - chr4.1:86674966-86674985 None:intergenic 35.0%
TCTTTGACTGGGAGTAATTA+AGG - chr4.1:86678272-86678291 None:intergenic 35.0%
TGATAAAGTTCATTCGCTGT+CGG - chr4.1:86674858-86674877 None:intergenic 35.0%
TGATAGCAATGGTTCAAAAG+AGG + chr4.1:86678392-86678411 MS.gene053122:CDS 35.0%
TTAATTACTCCCAGTCAAAG+AGG + chr4.1:86678271-86678290 MS.gene053122:intron 35.0%
TTTATAAAGCTCTTGCCAAG+TGG + chr4.1:86675310-86675329 MS.gene053122:intron 35.0%
TTTCCGTAATTGAGAGTTGT+AGG + chr4.1:86675827-86675846 MS.gene053122:intron 35.0%
TTTGGCAAGACAAATTTCTG+AGG - chr4.1:86675101-86675120 None:intergenic 35.0%
! ACTATAGGCATTTTGTGAAG+GGG + chr4.1:86676733-86676752 MS.gene053122:intron 35.0%
! ATCATTAGTTTAACATGGGG+TGG + chr4.1:86678000-86678019 MS.gene053122:intron 35.0%
! CAATCTTTTCCTTTCACTTG+AGG - chr4.1:86674400-86674419 None:intergenic 35.0%
! CACTATAGGCATTTTGTGAA+GGG + chr4.1:86676732-86676751 MS.gene053122:intron 35.0%
! CATTTCATCTTCCTCTAAAG+AGG + chr4.1:86674694-86674713 MS.gene053122:intron 35.0%
! CGGGCTTTATAAGTATATTC+TGG - chr4.1:86678499-86678518 None:intergenic 35.0%
! TATTTTGCTTCACATGTCGA+TGG + chr4.1:86675888-86675907 MS.gene053122:intron 35.0%
!! GTTAAATGGCATTGGTTTAG+CGG + chr4.1:86676696-86676715 MS.gene053122:intron 35.0%
!! TCTGACTTGTTGTAAGGATT+CGG - chr4.1:86673882-86673901 None:intergenic 35.0%
!!! CTCCATTTTAGTTCCTATGT+TGG + chr4.1:86677947-86677966 MS.gene053122:intron 35.0%
!!! TTTTTTAACACCCTACCGTA+TGG + chr4.1:86676652-86676671 MS.gene053122:intron 35.0%
AAAATAATCCAGACACCACG+AGG - chr4.1:86675874-86675893 None:intergenic 40.0%
AACATCAAAGTCAAAGCCTG+TGG + chr4.1:86675597-86675616 MS.gene053122:intron 40.0%
AGCAATCTTTCCTCTTTGAC+TGG - chr4.1:86678284-86678303 None:intergenic 40.0%
AGCACCTCAACAATTCAAGA+AGG - chr4.1:86675549-86675568 None:intergenic 40.0%
ATATTGCATCTCTGGTCATG+TGG + chr4.1:86675240-86675259 MS.gene053122:intron 40.0%
ATTGGACTTGATGTGATTCG+TGG + chr4.1:86674154-86674173 MS.gene053122:CDS 40.0%
CAAAAGGGTTTCCTCTTTAG+AGG - chr4.1:86674708-86674727 None:intergenic 40.0%
CCAATCATGATCGTGCATTA+TGG - chr4.1:86676861-86676880 None:intergenic 40.0%
CCAATGTTGTTAATGGCAGA+TGG - chr4.1:86676793-86676812 None:intergenic 40.0%
CCATAATGCACGATCATGAT+TGG + chr4.1:86676858-86676877 MS.gene053122:intron 40.0%
CCATCTGCCATTAACAACAT+TGG + chr4.1:86676790-86676809 MS.gene053122:intron 40.0%
CCTTCACAAAATGCCTATAG+TGG - chr4.1:86676734-86676753 None:intergenic 40.0%
CTAGATAAGGTAGCTGATAG+CGG + chr4.1:86674884-86674903 MS.gene053122:intron 40.0%
CTATTCATTGCACACTAGGA+TGG - chr4.1:86678216-86678235 None:intergenic 40.0%
CTGTCCTTCTTGAATTGTTG+AGG + chr4.1:86675542-86675561 MS.gene053122:intron 40.0%
GAAAGATTGCTACATAGCTC+CGG + chr4.1:86678293-86678312 MS.gene053122:intron 40.0%
GACTGACATGGCTTAATAGA+TGG + chr4.1:86677855-86677874 MS.gene053122:intron 40.0%
GAGATTGAGATGGTAGACAA+CGG - chr4.1:86677131-86677150 None:intergenic 40.0%
GATAAAGTTCATTCGCTGTC+GGG - chr4.1:86674857-86674876 None:intergenic 40.0%
GATACGTCGAAAACTACCAT+CGG + chr4.1:86674118-86674137 MS.gene053122:CDS 40.0%
GATGATAGACTAGAGAAGCT+TGG + chr4.1:86674671-86674690 MS.gene053122:intron 40.0%
GATGTTTGGGAAGGAGATAA+GGG + chr4.1:86674282-86674301 MS.gene053122:CDS 40.0%
GCAATCTTTCCTCTTTGACT+GGG - chr4.1:86678283-86678302 None:intergenic 40.0%
GCAGTGGTGTGTTTATATGA+CGG + chr4.1:86676759-86676778 MS.gene053122:intron 40.0%
GGTGTGACCAATGTTGTTAA+TGG - chr4.1:86676800-86676819 None:intergenic 40.0%
GTACTGGAATCAACATAGAG+TGG - chr4.1:86675968-86675987 None:intergenic 40.0%
GTCATATAAACACACCACTG+CGG - chr4.1:86676760-86676779 None:intergenic 40.0%
GTTGAAATTTAGCCGTTCCA+GGG + chr4.1:86677077-86677096 MS.gene053122:intron 40.0%
GTTGAAGAAAGTGAGGGAAA+TGG + chr4.1:86674447-86674466 MS.gene053122:CDS 40.0%
TAGCCAAGGTGAATGATTCA+GGG + chr4.1:86674311-86674330 MS.gene053122:CDS 40.0%
TATACTTATAAAGCCCGGAC+TGG + chr4.1:86678502-86678521 MS.gene053122:CDS 40.0%
TCAACAAGATGCTCTTTAGG+AGG - chr4.1:86675468-86675487 None:intergenic 40.0%
TCATGATTGGATCGAGTGTT+TGG + chr4.1:86676193-86676212 MS.gene053122:intron 40.0%
TGAATGTGCTTCTGTTAGGT+AGG + chr4.1:86676583-86676602 MS.gene053122:intron 40.0%
TGACTGGGAGTAATTAAGGA+CGG - chr4.1:86678268-86678287 None:intergenic 40.0%
TGAGAGGTTGAAGAAAGTGA+GGG + chr4.1:86674441-86674460 MS.gene053122:CDS 40.0%
TGGTAGATTGGATGAAAGCT+GGG + chr4.1:86677683-86677702 MS.gene053122:intron 40.0%
TGTTACCGGATTCGATGTTT+GGG + chr4.1:86674269-86674288 MS.gene053122:CDS 40.0%
TGTTGAAATTTAGCCGTTCC+AGG + chr4.1:86677076-86677095 MS.gene053122:intron 40.0%
TGTTGTCAATTAGGGGCTAT+AGG + chr4.1:86675139-86675158 MS.gene053122:intron 40.0%
TTAGCCAAGGTGAATGATTC+AGG + chr4.1:86674310-86674329 MS.gene053122:CDS 40.0%
TTGGTAGATTGGATGAAAGC+TGG + chr4.1:86677682-86677701 MS.gene053122:intron 40.0%
TTGTTACCGGATTCGATGTT+TGG + chr4.1:86674268-86674287 MS.gene053122:CDS 40.0%
TTGTTGTAAGGATTCGGAGA+AGG - chr4.1:86673876-86673895 None:intergenic 40.0%
! CCAATGCCATTTAACAACAC+TGG - chr4.1:86676691-86676710 None:intergenic 40.0%
! CCACTATAGGCATTTTGTGA+AGG + chr4.1:86676731-86676750 MS.gene053122:intron 40.0%
! CCAGTGTTGTTAAATGGCAT+TGG + chr4.1:86676688-86676707 MS.gene053122:intron 40.0%
! CTATAGGCATTTTGTGAAGG+GGG + chr4.1:86676734-86676753 MS.gene053122:intron 40.0%
! GTGAATGATTCAGGGAGTTT+TGG + chr4.1:86674319-86674338 MS.gene053122:CDS 40.0%
! TGTTATCTGGGTGAAAGTAC+TGG - chr4.1:86675984-86676003 None:intergenic 40.0%
!! TGAGCTTCTGACTTGTTGTA+AGG - chr4.1:86673888-86673907 None:intergenic 40.0%
!! TGCTTTAGGATGTGCATTCT+CGG + chr4.1:86678362-86678381 MS.gene053122:intron 40.0%
!! TTGGATTCGTTTTGTTGCGA+GGG - chr4.1:86673956-86673975 None:intergenic 40.0%
!! TTTGGATTCGTTTTGTTGCG+AGG - chr4.1:86673957-86673976 None:intergenic 40.0%
!!! TGGGTTTTGTGGTTTTGAGA+CGG - chr4.1:86673775-86673794 None:intergenic 40.0%
AAAAGCTTCCGAGGAATGCT+AGG + chr4.1:86676945-86676964 MS.gene053122:intron 45.0%
AAAGCTTCCGAGGAATGCTA+GGG + chr4.1:86676946-86676965 MS.gene053122:intron 45.0%
AAATTCGACGAATCAGACGC+CGG + chr4.1:86674195-86674214 MS.gene053122:CDS 45.0%
AACTTACAGGGCCAGTTAAC+TGG - chr4.1:86677038-86677057 None:intergenic 45.0%
AAGATGTCCGAGTCAGATTG+TGG + chr4.1:86676057-86676076 MS.gene053122:CDS 45.0%
AATACCTCAGAAGAACCGAC+TGG + chr4.1:86678428-86678447 MS.gene053122:CDS 45.0%
AATATGTCAGCGGGGAATAG+TGG + chr4.1:86674238-86674257 MS.gene053122:CDS 45.0%
ACTCCCTGAATCATTCACCT+TGG - chr4.1:86674317-86674336 None:intergenic 45.0%
AGATGGTAGACAACGGAAAG+CGG - chr4.1:86677124-86677143 None:intergenic 45.0%
AGGGCTATTCATTGCACACT+AGG - chr4.1:86678220-86678239 None:intergenic 45.0%
AGGGTTGTGGTCATGTTGTA+AGG + chr4.1:86675333-86675352 MS.gene053122:intron 45.0%
ATAAAGCTCTTGCCAAGTGG+AGG + chr4.1:86675313-86675332 MS.gene053122:intron 45.0%
ATACCTCAGAAGAACCGACT+GGG + chr4.1:86678429-86678448 MS.gene053122:CDS 45.0%
ATATGTCAGCGGGGAATAGT+GGG + chr4.1:86674239-86674258 MS.gene053122:CDS 45.0%
CAGCAGAGGACATGTTATCT+GGG - chr4.1:86675996-86676015 None:intergenic 45.0%
CGATGTTTGGGAAGGAGATA+AGG + chr4.1:86674281-86674300 MS.gene053122:CDS 45.0%
CGGCCTACAACTCTCAATTA+CGG - chr4.1:86675833-86675852 None:intergenic 45.0%
CTATTCCCCGCTGACATATT+CGG - chr4.1:86674238-86674257 None:intergenic 45.0%
CTGGAGATGGTGAGTATAGA+AGG + chr4.1:86677776-86677795 MS.gene053122:intron 45.0%
CTTCAACCTCTCACTCAACT+CGG - chr4.1:86674434-86674453 None:intergenic 45.0%
GAAGAAGCCAATCTCGTTTC+AGG + chr4.1:86674051-86674070 MS.gene053122:CDS 45.0%
GATATGTTGTCCCTGATTGG+TGG + chr4.1:86675420-86675439 MS.gene053122:CDS 45.0%
GGTAGATTGGATGAAAGCTG+GGG + chr4.1:86677684-86677703 MS.gene053122:intron 45.0%
GGTTATGATGACTCGCCATA+CGG - chr4.1:86676670-86676689 None:intergenic 45.0%
GTGAGAGGTTGAAGAAAGTG+AGG + chr4.1:86674440-86674459 MS.gene053122:CDS 45.0%
TAAAGCTCTTGCCAAGTGGA+GGG + chr4.1:86675314-86675333 MS.gene053122:intron 45.0%
TAGATCATCGGAATCAGGTG+CGG - chr4.1:86674023-86674042 None:intergenic 45.0%
TAGGATGTGCATTCTCGGAA+AGG + chr4.1:86678367-86678386 MS.gene053122:intron 45.0%
TCAGCAGAGGACATGTTATC+TGG - chr4.1:86675997-86676016 None:intergenic 45.0%
TCCTTCCCAAACATCGAATC+CGG - chr4.1:86674277-86674296 None:intergenic 45.0%
TCGATCCAAAGATTCCGCTT+CGG + chr4.1:86674096-86674115 MS.gene053122:CDS 45.0%
TCGGAAAGGTCTGATAGCAA+TGG + chr4.1:86678381-86678400 MS.gene053122:CDS 45.0%
TCTGCTCGTGTTCAAGGTAA+AGG + chr4.1:86676081-86676100 MS.gene053122:intron 45.0%
TGAATTAACCTCGTGGTGTC+TGG + chr4.1:86675863-86675882 MS.gene053122:intron 45.0%
TGCTTCACATGTCGATGGAT+AGG + chr4.1:86675893-86675912 MS.gene053122:intron 45.0%
TGTAAGGATTCGGAGAAGGA+GGG - chr4.1:86673872-86673891 None:intergenic 45.0%
TGTATGACCCTAGCATTCCT+CGG - chr4.1:86676956-86676975 None:intergenic 45.0%
TTGGGAAGGAGATAAGGGAT+AGG + chr4.1:86674287-86674306 MS.gene053122:CDS 45.0%
TTGTAAGGATTCGGAGAAGG+AGG - chr4.1:86673873-86673892 None:intergenic 45.0%
! AGTTTTCGACGTATCCGAAG+CGG - chr4.1:86674113-86674132 None:intergenic 45.0%
! GATAAGGGATAGGTTAGCCA+AGG + chr4.1:86674297-86674316 MS.gene053122:CDS 45.0%
! GTTTATGTAGCAAGCTCTGG+TGG + chr4.1:86677203-86677222 MS.gene053122:intron 45.0%
!! AGAGTAGGGTTTGGGTTTTG+TGG - chr4.1:86673786-86673805 None:intergenic 45.0%
!! AGGAGAAGGTGTTGTGTTTG+AGG - chr4.1:86673927-86673946 None:intergenic 45.0%
!! CAGGGAGTTTTGGTACTGTT+AGG + chr4.1:86674329-86674348 MS.gene053122:CDS 45.0%
!! GAAGGTGTTGTGTTTGAGGT+TGG - chr4.1:86673923-86673942 None:intergenic 45.0%
!! TAAAGCCCGGACTGGTAAAT+CGG + chr4.1:86678510-86678529 MS.gene053122:CDS 45.0%
!! TAGTGGGACGAGTTTGTTAC+CGG + chr4.1:86674255-86674274 MS.gene053122:CDS 45.0%
!!! TGGTTTTGGAACGGAAGCTT+TGG - chr4.1:86674000-86674019 None:intergenic 45.0%
ACCGGATTCGATGTTTGGGA+AGG + chr4.1:86674273-86674292 MS.gene053122:CDS 50.0%
ACGTCGAAAACTACCATCGG+TGG + chr4.1:86674121-86674140 MS.gene053122:CDS 50.0%
AGCAGAGCCACAATCTGACT+CGG - chr4.1:86676067-86676086 None:intergenic 50.0%
AGCTTGGAGTTCCACCAATC+AGG - chr4.1:86675434-86675453 None:intergenic 50.0%
ATGATGACTCGCCATACGGT+AGG - chr4.1:86676666-86676685 None:intergenic 50.0%
ATTGCTACATAGCTCCGGTC+TGG + chr4.1:86678298-86678317 MS.gene053122:intron 50.0%
CGTATCCGAAGCGGAATCTT+TGG - chr4.1:86674104-86674123 None:intergenic 50.0%
GACATATTCGGTCTCCACCT+CGG - chr4.1:86674226-86674245 None:intergenic 50.0%
GATGGTAGACAACGGAAAGC+GGG - chr4.1:86677123-86677142 None:intergenic 50.0%
GCGTCGCTATTCGACAACAT+CGG - chr4.1:86674742-86674761 None:intergenic 50.0%
GCTTGGAGTTCCACCAATCA+GGG - chr4.1:86675433-86675452 None:intergenic 50.0%
GGGGTGGACAATGTAATCTG+CGG + chr4.1:86678016-86678035 MS.gene053122:intron 50.0%
GTGGAGACCGAATATGTCAG+CGG + chr4.1:86674228-86674247 MS.gene053122:CDS 50.0%
TCCAACTCCGGTGACAATGA+CGG + chr4.1:86673833-86673852 MS.gene053122:CDS 50.0%
TCGAAAACTACCATCGGTGG+TGG + chr4.1:86674124-86674143 MS.gene053122:CDS 50.0%
TCGGGTGACGTAGCCAATTA+AGG + chr4.1:86678529-86678548 MS.gene053122:CDS 50.0%
TGATGACTCGCCATACGGTA+GGG - chr4.1:86676665-86676684 None:intergenic 50.0%
TGGAGACCGAATATGTCAGC+GGG + chr4.1:86674229-86674248 MS.gene053122:CDS 50.0%
! AAAACTACCATCGGTGGTGG+TGG + chr4.1:86674127-86674146 MS.gene053122:CDS 50.0%
! AAACTACCATCGGTGGTGGT+GGG + chr4.1:86674128-86674147 MS.gene053122:CDS 50.0%
! AATCCCAGTCGGTTCTTCTG+AGG - chr4.1:86678435-86678454 None:intergenic 50.0%
! AGTGGTGGAGAGTAGGGTTT+GGG - chr4.1:86673794-86673813 None:intergenic 50.0%
! GGAGGCTTTGACAAGTAGCT+TGG - chr4.1:86675450-86675469 None:intergenic 50.0%
! TGATGGAGTGGTGGAGAGTA+GGG - chr4.1:86673800-86673819 None:intergenic 50.0%
! TTTTGTTGCGAGGGAGAGAG+AGG - chr4.1:86673947-86673966 None:intergenic 50.0%
!! AAAGCCCGGACTGGTAAATC+GGG + chr4.1:86678511-86678530 MS.gene053122:CDS 50.0%
!! AGGACAGTTTTGGTGGAGAC+TGG + chr4.1:86677757-86677776 MS.gene053122:intron 50.0%
!! GTTTTGGTGGAGACTGGAGA+TGG + chr4.1:86677763-86677782 MS.gene053122:intron 50.0%
AACTCCGGTGACAATGACGG+TGG + chr4.1:86673836-86673855 MS.gene053122:CDS 55.0%
ACCGTCATTGTCACCGGAGT+TGG - chr4.1:86673837-86673856 None:intergenic 55.0%
ATCATCGGAATCAGGTGCGG+TGG - chr4.1:86674020-86674039 None:intergenic 55.0%
ATTGTCACCGGAGTTGGAGG+TGG - chr4.1:86673831-86673850 None:intergenic 55.0%
CATGACCACAACCCTCCACT+TGG - chr4.1:86675328-86675347 None:intergenic 55.0%
CGTCACCCGATTTACCAGTC+CGG - chr4.1:86678519-86678538 None:intergenic 55.0%
CTCTTCTCCACCTCCAACTC+CGG + chr4.1:86673821-86673840 MS.gene053122:CDS 55.0%
GGAGACCGAATATGTCAGCG+GGG + chr4.1:86674230-86674249 MS.gene053122:CDS 55.0%
GTCACCCGATTTACCAGTCC+GGG - chr4.1:86678518-86678537 None:intergenic 55.0%
GTCATTGTCACCGGAGTTGG+AGG - chr4.1:86673834-86673853 None:intergenic 55.0%
GTGATGTCAATCGCGGATCG+CGG - chr4.1:86675205-86675224 None:intergenic 55.0%
GTGGAGATGAGACCCTGGAA+CGG - chr4.1:86677092-86677111 None:intergenic 55.0%
TCTTGCCAAGTGGAGGGTTG+TGG + chr4.1:86675320-86675339 MS.gene053122:intron 55.0%
TGGAGGTGGAGAAGAGGTGA+TGG - chr4.1:86673817-86673836 None:intergenic 55.0%
! AACTACCATCGGTGGTGGTG+GGG + chr4.1:86674129-86674148 MS.gene053122:CDS 55.0%
! CGATTGCCGAGTTGAGTGAG+AGG + chr4.1:86674425-86674444 MS.gene053122:CDS 55.0%
! GAGTGGTGGAGAGTAGGGTT+TGG - chr4.1:86673795-86673814 None:intergenic 55.0%
! GGAATCAGGTGCGGTGGTTT+TGG - chr4.1:86674014-86674033 None:intergenic 55.0%
! GTGATGGAGTGGTGGAGAGT+AGG - chr4.1:86673801-86673820 None:intergenic 55.0%
! TGTGGCTCTGCTCGTGTTCA+AGG + chr4.1:86676075-86676094 MS.gene053122:CDS 55.0%
!! GAGAAGAGGTGATGGAGTGG+TGG - chr4.1:86673809-86673828 None:intergenic 55.0%
!! GTGGAGAAGAGGTGATGGAG+TGG - chr4.1:86673812-86673831 None:intergenic 55.0%
!!! CAGGTGCGGTGGTTTTGGAA+CGG - chr4.1:86674009-86674028 None:intergenic 55.0%
AATACCCCCACCACCACCGA+TGG - chr4.1:86674137-86674156 None:intergenic 60.0%
CGGAGTTGGAGGTGGAGAAG+AGG - chr4.1:86673823-86673842 None:intergenic 60.0%
GTCGCCACCGTCATTGTCAC+CGG - chr4.1:86673843-86673862 None:intergenic 60.0%
GTGTCGTGGAGATGAGACCC+TGG - chr4.1:86677097-86677116 None:intergenic 60.0%
TGCGAGGGAGAGAGAGGAGA+AGG - chr4.1:86673941-86673960 None:intergenic 60.0%
! TTTTGTGAAGGGGGCCGCAG+TGG + chr4.1:86676743-86676762 MS.gene053122:intron 60.0%
!! ACTACCATCGGTGGTGGTGG+GGG + chr4.1:86674130-86674149 MS.gene053122:CDS 60.0%
!! ATCGGTGGTGGTGGGGGTAT+TGG + chr4.1:86674136-86674155 MS.gene053122:CDS 60.0%
ATCAGACGCCGGTGACGCCG+AGG + chr4.1:86674206-86674225 MS.gene053122:CDS 70.0%
GGTCTCCACCTCGGCGTCAC+CGG - chr4.1:86674217-86674236 None:intergenic 70.0%
! CGGAAAGCGGGCTCGTGTCG+TGG - chr4.1:86677111-86677130 None:intergenic 70.0%
AGACGCCGGTGACGCCGAGG+TGG + chr4.1:86674209-86674228 MS.gene053122:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 86673758 86678549 86673758 ID=MS.gene053122
chr4.1 mRNA 86673758 86678549 86673758 ID=MS.gene053122.t1;Parent=MS.gene053122
chr4.1 exon 86673758 86674589 86673758 ID=MS.gene053122.t1.exon1;Parent=MS.gene053122.t1
chr4.1 CDS 86673758 86674589 86673758 ID=cds.MS.gene053122.t1;Parent=MS.gene053122.t1
chr4.1 exon 86675409 86675491 86675409 ID=MS.gene053122.t1.exon2;Parent=MS.gene053122.t1
chr4.1 CDS 86675409 86675491 86675409 ID=cds.MS.gene053122.t1;Parent=MS.gene053122.t1
chr4.1 exon 86675985 86676096 86675985 ID=MS.gene053122.t1.exon3;Parent=MS.gene053122.t1
chr4.1 CDS 86675985 86676096 86675985 ID=cds.MS.gene053122.t1;Parent=MS.gene053122.t1
chr4.1 exon 86676277 86676329 86676277 ID=MS.gene053122.t1.exon4;Parent=MS.gene053122.t1
chr4.1 CDS 86676277 86676329 86676277 ID=cds.MS.gene053122.t1;Parent=MS.gene053122.t1
chr4.1 exon 86678370 86678549 86678370 ID=MS.gene053122.t1.exon5;Parent=MS.gene053122.t1
chr4.1 CDS 86678370 86678549 86678370 ID=cds.MS.gene053122.t1;Parent=MS.gene053122.t1
Gene Sequence

>MS.gene053122

ATGGCGCTTCTTCTCCGTCTCAAAACCACAAAACCCAAACCCTACTCTCCACCACTCCATCACCTCTTCTCCACCTCCAACTCCGGTGACAATGACGGTGGCGACAAAAAACCCTCCTTCTCCGAATCCTTACAACAAGTCAGAAGCTCATTCAAACAACAACCAACCTCAAACACAACACCTTCTCCTCTCTCTCCCTCGCAACAAAACGAATCCAAAGATGATATCTTGAGCAAAATCCAAAGCTTCCGTTCCAAAACCACCGCACCTGATTCCGATGATCTATTAACTCAGAAGAAGCCAATCTCGTTTCAGGATATGTATAGTAGAATGCATAATCGATCCAAAGATTCCGCTTCGGATACGTCGAAAACTACCATCGGTGGTGGTGGGGGTATTGGACTTGATGTGATTCGTGGAAGTTTAAATCAGCTGAAAAATTCGACGAATCAGACGCCGGTGACGCCGAGGTGGAGACCGAATATGTCAGCGGGGAATAGTGGGACGAGTTTGTTACCGGATTCGATGTTTGGGAAGGAGATAAGGGATAGGTTAGCCAAGGTGAATGATTCAGGGAGTTTTGGTACTGTTAGGTTATATATGCATGGTGAATTAGGTGAGAAATTGAAGAAATTGAGACCTCAAGTGAAAGGAAAAGATTGGTTTTCGATTGCCGAGTTGAGTGAGAGGTTGAAGAAAGTGAGGGAAATGGATGAAATTGAAGCTAAGTCGAGTAAATCTAGTGCCGATACAAATAAAGTGTTCAACATTTTGAAAGATTCTGTTCAACATATCAAAGCTAAAGAAGCTGAGAAACCTAATAAAGCTTCATGTTAGTAATGTTTTTAATTTTGTTTGTTTTGTTGATTTGATTTGACACTGTTTCAGTTGTTCCTTTTAGTTATGATACGATGATGATAGACTAGAGAAGCTTGGCATTTCATCTTCCTCTAAAGAGGAAACCCTTTTGAGTTAGTATATCCGATGTTGTCGAATAGCGACGCTATATCATAGTTGAATTTGAAAAATTTGCTATTGTTTTGCAATACATGTTTAGGCTATGTTTGGTAAAAAATAGTGGATGGCTGAGAAGCTACCCGACAGCGAATGAACTTTATCATTGATACTAGATAAGGTAGCTGATAGCGGATAAACTAGCTCATAGTTGATAAATTAGTGGGTTGAATGGGGAAAGAGATGATAAGCCATAAGCTCAAACACTACTAGAAGTAGCTTATGAAGAAACTCTATATGCCAGTAAAAAAGCTTAAACTTGTGAGAGAAAATTGTGCCAAACAAATATATTTTGGTCATAGGGGCTTATATGCTATCCTCTATAACCTCAGAAATTTGTCTTGCCAAACAGAGCCTTAGTATAAAGTGTTGTCAATTAGGGGCTATAGGTCCACTATTGTTTAGTGGAATTGGAAGAAACAACTATTTTCCGCGATCCGCGATTGACATCACTGAATATATCATTGTATATTGCATCTCTGGTCATGTGGTAGTGTGATTGAATGTAAAATAAATCTATTGTAGATGGTAGTCTTGTTTTATAAAGCTCTTGCCAAGTGGAGGGTTGTGGTCATGTTGTAAGGCTATTATGATGTGATTTTATATGAAAAATATAAGTGATGGTGTGGTTTTTCAGCGCAGAGAATTGATATGTTGTCCCTGATTGGTGGAACTCCAAGCTACTTGTCAAAGCCTCCTAAAGAGCATCTTGTTGAAAAGGCAAGCATGTTTTTGTTTGATATATCTTATTTATAATTTTGATTTGTTGTCTGTCCTTCTTGAATTGTTGAGGTGCTGACCTTCATCTGATAGCTACAATTGTCAAACATCAAAGTCAAAGCCTGTGGTTTATAACTCTATATTTTATTTGTTCTCTGTTTTCTCTCCATTCAATTAATCTAAAATGCTGCTTATCTAGTGAATGTTGAATCCATAGTCAAACATTAATATATTGAAACATTTTTCTCCCCACTTTTTTTTAAGCTATTACAGCCTCATGATGAAATTCATCAAGTTATTGTCCATCTCTTGCTATTTGTTGATTGCTTTGGTCATTTCCGTAATTGAGAGTTGTAGGCCGCTTGATATTTTGAATTAACCTCGTGGTGTCTGGATTATTTTGCTTCACATGTCGATGGATAGGCACATTTTGTTTTTTTAATGGTGTTAATTAATTCACTGTCCTAATATTTCCACTCTATGTTGATTCCAGTACTTTCACCCAGATAACATGTCCTCTGCTGAAAAATTGAAAATTGAGCTGACAAAGGTTAGAGATGAATTTAAGATGTCCGAGTCAGATTGTGGCTCTGCTCGTGTTCAAGGTAAAGGAAACTACTATTCTTTAACTAATTTGTGAAGTGTTCGATATTAAATTTAGACGGGACCAAATATGTTTGCTATACTTTACTAATTTTCTTTCATGATTGGATCGAGTGTTTGGAATATATTAATAGGAACTTGTTAATGAATTAATACTAACTCACTAATGTAATGTTATGCAGTTGCGACACTGACAACCAAGATTAAGCATCTATCATCAGTTCTACACAAGAAGGTGAGTTGCTTCTTTGTTTGTCATTTTTCTGATATATTATTGCGTTTGTATATCAATGACTAGAATACACCTCAATAGAAGATTTGTATGTTCAACCATTTGATGTACAAACATTGTTGATAGTGTCTACTGTTCTGCTTTGTTTATGAAATACTGTTTTATTCTGTCACGTGTTTCTTTTAAATCTAGTATAACGGTGCTGTTCTTTTACCAGTTTTCATAGTCTGTAAAATTTTCGTCTGGCTGCGATATTTGAATGTGCTTCTGTTAGGTAGGAGTAGAGTTTCTAGTTACAATCAACCAACTCTAGTACTAATTTTTTTTTTTTAACACCCTACCGTATGGCGAGTCATCATAACCAGTGTTGTTAAATGGCATTGGTTTAGCGGATTTTTTGACAACCACTATAGGCATTTTGTGAAGGGGGCCGCAGTGGTGTGTTTATATGACGGATTTTTGGCCATCTGCCATTAACAACATTGGTCACACCTGTACAACTTTATAAATATTCTGCAAAGGAGACTGGGTCCATAATGCACGATCATGATTGGATTTTCTATCATTCAGTTAGAACTTTATCTTGAGCTAGTATTTTAATATATATGTTCTTTTTATAAAAGCTTCCGAGGAATGCTAGGGTCATACACATTTCTTTAAACACACACTCATCTATTAAGTCACATCAGCCCTTATTTTTAATCTTTACCAGTTAACTGGCCCTGTAAGTTCAGAGAGATAAAAAAATTTGTTGAAATTTAGCCGTTCCAGGGTCTCATCTCCACGACACGAGCCCGCTTTCCGTTGTCTACCATCTCAATCTCAATCTCAATCTCACTTGGTCGTCTCTATCATGTGCTCTGCTGCCAACATATTGTTTATGTAGCAAGCTCTGGTGGCCATGTTAACTAAAACAATTTTCAGGTTTCATTGTATCTCAGACAAATTAAGATGGGTATTGGGTATTATTATGACAATCTCAATCTCAATCTCACTTGGTCGTCTCTATCATGTGCTCTGCTGCCAACATATTGTTTATGTAGCAAGCTCTGGTGGCCATGTTAACTAAAACAATTTTCAGGTTTCATTGTATCTCAGACAAATTAAGATGGGTATTGGGTATTATTATGAAGATGGGTAAATTCAATTGCAATCTTAGCCAGAGTCATAAAAATCATAGCTTAAAGGTGCGAATACAAGAGATTTGACACTAACAATAACCCATAGACATGAGTAACAATAACATAAGCAGCGAGAATGAGTGCGAGATTTGCGAATAGACCAACAAACTTAAAATTCAAAAAGTAAGAGTAAACAACTTTTTTATACACAACCATCTTAGTAAAAGAATATTGTTGGTAGATTGGATGAAAGCTGGGGTCTATTGACAGAAAAAAATGTAGTGAACGACCAAGAGAACTTGCAAGAGCAGGACAGTTTTGGTGGAGACTGGAGATGGTGAGTATAGAAGGTGAAAGTTTAATATCATTCACATCGAAATAGGTAACCAATTACATGATTAAAAATAGACTGACATGGCTTAATAGATGGGAATGTGTTTACAGGAGTATACTAAAGAGTGTGATGTGACCCTAGTATTTCATTTCTCATAAGCTTCCACTCCATTTTAGTTCCTATGTTGGAAGTTGTAATTTTCTGTGTTCTATGAGTTCATCATTAGTTTAACATGGGGTGGACAATGTAATCTGCGGCTCCATTTGATCCCTGATTAAATTCTTATGTTCATACTTGCTATGACTTCTTCTGTGAACAAAATCTTAACCTCGGCCTTCAATATAATTTTGAATTGGTAACTGCATATGCTGTCAACATTTATATATTATGTTCTTTGTTTTACTCACCTTGCTTCAATTTATGCTATATGCCCATCCTAGTGTGCAATGAATAGCCCTCATCACTAGTCACATGAATTATTCTCCGTCCTTAATTACTCCCAGTCAAAGAGGAAAGATTGCTACATAGCTCCGGTCTGGCTAGTATTACTATTTTATCCCTGATTAAATTCTTTCTGTGATGCTTTAGGATGTGCATTCTCGGAAAGGTCTGATAGCAATGGTTCAAAAGAGGAAAAAGTTGCTGAAATACCTCAGAAGAACCGACTGGGATTCCTATTGTTTTGTTCTCTCTAAGTTAGGTCTACGTGATAATCCAGAATATACTTATAAAGCCCGGACTGGTAAATCGGGTGACGTAGCCAATTAA

Protein sequence

>MS.gene053122.t1

MALLLRLKTTKPKPYSPPLHHLFSTSNSGDNDGGDKKPSFSESLQQVRSSFKQQPTSNTTPSPLSPSQQNESKDDILSKIQSFRSKTTAPDSDDLLTQKKPISFQDMYSRMHNRSKDSASDTSKTTIGGGGGIGLDVIRGSLNQLKNSTNQTPVTPRWRPNMSAGNSGTSLLPDSMFGKEIRDRLAKVNDSGSFGTVRLYMHGELGEKLKKLRPQVKGKDWFSIAELSERLKKVREMDEIEAKSSKSSADTNKVFNILKDSVQHIKAKEAEKPNKASSQRIDMLSLIGGTPSYLSKPPKEHLVEKYFHPDNMSSAEKLKIELTKVRDEFKMSESDCGSARVQVATLTTKIKHLSSVLHKKDVHSRKGLIAMVQKRKKLLKYLRRTDWDSYCFVLSKLGLRDNPEYTYKARTGKSGDVAN