AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27432

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27432.t1 MTR_4g072350 79.755 326 61 1 1 326 1 321 0.0 538
MS.gene27432.t1 MTR_4g072360 76.308 325 72 1 1 325 1 320 0.0 515
MS.gene27432.t1 MTR_4g072320 75.385 325 69 3 1 325 1 314 0.0 506
MS.gene27432.t1 MTR_6g073110 59.133 323 127 1 1 323 1 318 4.20e-146 414
MS.gene27432.t1 MTR_0374s0050 50.610 328 146 3 1 325 1 315 2.74e-111 326
MS.gene27432.t1 MTR_3g083130 49.845 323 137 8 8 323 9 313 2.50e-102 303
MS.gene27432.t1 MTR_4g036845 46.440 323 161 7 5 325 2 314 3.17e-92 277
MS.gene27432.t1 MTR_5g097900 50.161 311 134 7 16 323 19 311 1.87e-91 275
MS.gene27432.t1 MTR_5g097910 51.903 289 127 5 16 302 19 297 2.89e-91 275
MS.gene27432.t1 MTR_5g097940 51.903 289 127 5 16 302 19 297 2.89e-91 275
MS.gene27432.t1 MTR_8g070095 45.768 319 159 7 11 325 10 318 5.71e-89 269
MS.gene27432.t1 MTR_6g072650 81.333 150 6 1 177 326 10 137 3.72e-83 248
MS.gene27432.t1 MTR_8g070115 43.385 325 170 6 3 325 2 314 1.74e-82 253
MS.gene27432.t1 MTR_4g021350 43.218 317 164 7 11 325 10 312 4.90e-80 246
MS.gene27432.t1 MTR_7g063580 43.769 329 169 7 1 325 37 353 2.24e-78 243
MS.gene27432.t1 MTR_4g021410 41.975 324 165 7 1 323 1 302 9.59e-74 230
MS.gene27432.t1 MTR_4g021350 43.793 290 148 6 11 299 10 285 4.13e-72 225
MS.gene27432.t1 MTR_4g021450 41.411 326 168 7 1 325 1 304 2.60e-71 223
MS.gene27432.t1 MTR_4g021410 43.617 282 139 6 43 323 3 265 2.78e-68 214
MS.gene27432.t1 MTR_7g070500 37.975 316 179 7 11 323 17 318 3.13e-68 216
MS.gene27432.t1 MTR_7g070500 37.755 294 169 5 11 304 17 296 2.31e-62 200
MS.gene27432.t1 MTR_4g072060 38.870 301 163 8 9 299 3 292 6.12e-59 192
MS.gene27432.t1 MTR_4g021410 43.033 244 120 5 81 323 1 226 1.96e-55 180
MS.gene27432.t1 MTR_4g021450 41.870 246 124 5 81 325 1 228 4.14e-53 174
MS.gene27432.t1 MTR_4g021450 46.111 180 92 2 147 325 10 185 4.10e-50 165
MS.gene27432.t1 MTR_6g072710 63.717 113 41 0 195 307 1 113 4.80e-49 160
MS.gene27432.t1 MTR_6g072705 88.889 45 5 0 113 157 41 85 6.66e-23 91.3
MS.gene27432.t1 MTR_3g449790 25.430 291 154 10 42 297 83 345 5.82e-13 69.3
MS.gene27432.t1 MTR_3g449790 25.086 291 161 10 42 297 83 351 1.03e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27432.t1 AT1G59960 50.323 310 148 2 17 325 21 325 3.04e-114 334
MS.gene27432.t1 AT1G59950 50.968 310 146 2 17 325 15 319 7.16e-109 320
MS.gene27432.t1 AT2G37790 48.418 316 150 5 11 325 10 313 2.81e-97 290
MS.gene27432.t1 AT2G37770 47.531 324 158 5 3 325 2 314 3.49e-94 282
MS.gene27432.t1 AT5G62420 44.969 318 162 8 11 325 8 315 5.10e-89 269
MS.gene27432.t1 AT3G53880 45.570 316 160 5 11 325 10 314 1.34e-87 266
MS.gene27432.t1 AT2G37760 45.886 316 155 5 11 325 10 310 3.42e-86 262
MS.gene27432.t1 AT2G37760 45.886 316 155 5 11 325 10 310 3.42e-86 262
MS.gene27432.t1 AT2G37760 46.048 291 142 4 11 301 10 285 1.09e-79 244
MS.gene27432.t1 AT2G37760 45.548 292 144 4 11 302 10 286 3.38e-79 243
MS.gene27432.t1 AT2G37760 45.548 292 144 4 11 302 10 286 3.38e-79 243
MS.gene27432.t1 AT3G53880 44.983 289 148 4 11 299 10 287 7.94e-77 238
MS.gene27432.t1 AT5G01670 39.077 325 181 8 2 323 9 319 1.30e-76 238
MS.gene27432.t1 AT5G01670 36.080 352 181 9 2 323 9 346 1.90e-70 223
MS.gene27432.t1 AT2G37760 45.693 267 136 4 60 325 6 264 4.38e-70 219
MS.gene27432.t1 AT2G37760 45.693 267 136 4 60 325 6 264 4.38e-70 219
MS.gene27432.t1 AT2G21260 39.073 302 163 8 8 299 2 292 5.80e-65 207
MS.gene27432.t1 AT2G21250 38.079 302 166 8 8 299 2 292 1.47e-63 204
MS.gene27432.t1 AT2G37770 49.296 213 97 4 3 215 2 203 5.00e-59 191
MS.gene27432.t1 AT2G21250 39.095 243 127 8 8 240 2 233 4.47e-47 159
MS.gene27432.t1 AT2G21260 35.714 224 127 6 86 299 8 224 4.88e-40 141

Find 70 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGCATACAAAGTATTT+TGG 0.154726 6.2:-74518990 MS.gene27432:CDS
TGAAGCTCTCACTTCAATTT+TGG 0.164436 6.2:-74519738 MS.gene27432:CDS
GTGATTCCCTTTGACATAAA+AGG 0.219739 6.2:-74519331 MS.gene27432:CDS
TTTGATACAGCTTCTATCTA+TGG 0.288397 6.2:-74519686 MS.gene27432:CDS
TAGAGAATGATGCTTGCTTT+AGG 0.303216 6.2:+74519522 None:intergenic
GCAGTTCCGAGTCCTATTAT+TGG 0.325919 6.2:+74519782 None:intergenic
TTGGGGCTCTAATGCTGTTA+TGG 0.334092 6.2:-74518971 MS.gene27432:CDS
GTTGCTAACACCAATAGATT+TGG 0.348806 6.2:+74519267 None:intergenic
GAAACTAAACCAAGAAGAAT+TGG 0.353464 6.2:-74518390 MS.gene27432:CDS
CATTTCACCGGCAGTTAATC+AGG 0.357915 6.2:-74519203 MS.gene27432:intron
TATGGAGAATCCTATTCTTC+AGG 0.366943 6.2:-74518953 MS.gene27432:CDS
GGGGAAAAGATGCCAATAAT+AGG 0.367023 6.2:-74519794 MS.gene27432:CDS
AGAGAATGATGCTTGCTTTA+GGG 0.367456 6.2:+74519523 None:intergenic
TCTATTGGTGTTAGCAACTT+TGG 0.367727 6.2:-74519262 MS.gene27432:CDS
ATGGAAGATTGTTATAGATT+AGG 0.378605 6.2:-74519295 MS.gene27432:CDS
AAAACCTTGAAATATTTGAT+TGG 0.391571 6.2:-74518412 MS.gene27432:CDS
GAAGTGAGAGCTTCATTTGA+TGG 0.392979 6.2:+74519746 None:intergenic
CATGAGGTGATACTAAATTC+AGG 0.395724 6.2:-74519815 MS.gene27432:CDS
TCAGCAATTTCCTGAAGAAT+AGG 0.400823 6.2:+74518943 None:intergenic
TGGATCTCTATTTGATTCAC+TGG 0.404097 6.2:-74519405 MS.gene27432:CDS
TTAGGCTTAGCCAAATCTAT+TGG 0.410561 6.2:-74519277 MS.gene27432:CDS
AGTTTCCCTTGTTGCCATGA+TGG 0.413836 6.2:+74519063 None:intergenic
GTTTCCAATCAAATATTTCA+AGG 0.435069 6.2:+74518408 None:intergenic
TCTTGCAGATAGCACTAAGA+TGG 0.451601 6.2:-74518493 MS.gene27432:intron
CTGATTAACTGCCGGTGAAA+TGG 0.455212 6.2:+74519204 None:intergenic
AAATGGACCTTACAAATCCT+TGG 0.461855 6.2:-74518309 MS.gene27432:CDS
TCCACAATGCAGACTTTACA+AGG 0.467068 6.2:-74518351 MS.gene27432:CDS
GTTGAAGGCTTTAACTTCAC+AGG 0.475700 6.2:-74519361 MS.gene27432:CDS
AGCTCTTCCAAGGATTTGTA+AGG 0.476136 6.2:+74518302 None:intergenic
AGGGAATTCTGCATGAAGAA+AGG 0.479737 6.2:-74519039 MS.gene27432:CDS
ACATCTTCTTTCAATCTCAC+TGG 0.482395 6.2:+74519382 None:intergenic
TGTGTGTGCGTGGTCACCAT+TGG 0.484763 6.2:-74519010 MS.gene27432:CDS
AGAGCTTCATTTGATGGAAG+AGG 0.490407 6.2:+74519752 None:intergenic
CATGGCAACAAGGGAAACTC+AGG 0.493453 6.2:-74519059 MS.gene27432:CDS
GGGAATTCTGCATGAAGAAA+GGG 0.499626 6.2:-74519038 MS.gene27432:CDS
TAGAAATAAGAGTGTAGCAC+AGG 0.501879 6.2:-74518917 MS.gene27432:intron
ATGAGGTGATACTAAATTCA+GGG 0.518353 6.2:-74519814 MS.gene27432:CDS
CAAATCCTTGGAAGAGCTGT+GGG 0.525762 6.2:-74518297 MS.gene27432:CDS
ATGTCTGTAGCCAATGTCAA+TGG 0.528985 6.2:+74519709 None:intergenic
TCTTATACCTGATTAACTGC+CGG 0.530912 6.2:+74519196 None:intergenic
TGAAAAGCTTTAACAAAGAG+AGG 0.531243 6.2:-74518442 MS.gene27432:CDS
CCTTTGACATAAAAGGAACA+TGG 0.535164 6.2:-74519324 MS.gene27432:CDS
GTGTGTGCGTGGTCACCATT+GGG 0.538596 6.2:-74519009 MS.gene27432:CDS
AAAAGGAACATGGAAAGCTA+TGG 0.539512 6.2:-74519314 MS.gene27432:CDS
GGTTGCATATTCCAAGAGTA+CGG 0.542847 6.2:+74519225 None:intergenic
AGATTGAAAGAAGATGTTGA+AGG 0.547100 6.2:-74519376 MS.gene27432:CDS
CTGAATTTAGTATCACCTCA+TGG 0.555888 6.2:+74519816 None:intergenic
GGAATATGCAACCATTTCAC+CGG 0.558951 6.2:-74519215 MS.gene27432:CDS
GTGTCAAAAGCTTTAGAGAT+CGG 0.568756 6.2:-74519638 MS.gene27432:CDS
TTGGTTGATGCCATTGACAT+TGG 0.577375 6.2:-74519719 MS.gene27432:CDS
GAATGATGCTTGCTTTAGGG+TGG 0.578769 6.2:+74519526 None:intergenic
ACCATCCCACAGCTCTTCCA+AGG 0.580081 6.2:+74518292 None:intergenic
ATGAATCCATCATGGCAACA+AGG 0.583038 6.2:-74519069 MS.gene27432:CDS
AGGTAGAAATGAATCCATCA+TGG 0.594785 6.2:-74519077 MS.gene27432:CDS
ACAAATCCTTGGAAGAGCTG+TGG 0.595019 6.2:-74518298 MS.gene27432:CDS
TGAATCCATCATGGCAACAA+GGG 0.596651 6.2:-74519068 MS.gene27432:CDS
AAGATGCCAATAATAGGACT+CGG 0.599398 6.2:-74519788 MS.gene27432:CDS
AGGCTTTAACTTCACAGGAG+AGG 0.613527 6.2:-74519356 MS.gene27432:CDS
ATGGTGACCACGCACACACA+TGG 0.618585 6.2:+74519013 None:intergenic
AATACTTTGTATGCTCCCAA+TGG 0.618795 6.2:+74518994 None:intergenic
GCCTTGTAAAGTCTGCATTG+TGG 0.628195 6.2:+74518350 None:intergenic
TATTCTTCAGGAAATTGCTG+AGG 0.632039 6.2:-74518941 MS.gene27432:CDS
CTAAGATGGATACATGAGCA+AGG 0.646695 6.2:-74518479 MS.gene27432:CDS
TGAGGTGATACTAAATTCAG+GGG 0.660799 6.2:-74519813 MS.gene27432:CDS
TAAGATGGATACATGAGCAA+GGG 0.664827 6.2:-74518478 MS.gene27432:CDS
TTTGACACAGCTACGCCTAG+AGG 0.668041 6.2:+74519653 None:intergenic
TCCTTGGAAGAGCTGTGGGA+TGG 0.668107 6.2:-74518293 MS.gene27432:CDS
ATGGCAACAAGGGAAACTCA+GGG 0.675053 6.2:-74519058 MS.gene27432:CDS
AAGGGATCCATGTGTGTGCG+TGG 0.685054 6.2:-74519020 MS.gene27432:CDS
GGAGGCAAATAAACTCCATG+AGG 0.708954 6.2:-74519831 MS.gene27432:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGTTGCAATTTTTT+AGG - chr6.2:74518669-74518688 MS.gene27432:intron 15.0%
!! AAAAAATGCAAACTGAAAAA+AGG + chr6.2:74518624-74518643 None:intergenic 20.0%
!! AAAACCTTGAAATATTTGAT+TGG - chr6.2:74519704-74519723 MS.gene27432:CDS 20.0%
!! AGCTTAAAATGTTAGATAAA+AGG - chr6.2:74519301-74519320 MS.gene27432:CDS 20.0%
!! AGTATTAACGTAATATTGAT+TGG + chr6.2:74518988-74519007 None:intergenic 20.0%
!!! GAAATGTTTTTATCTGAAAA+TGG - chr6.2:74519790-74519809 MS.gene27432:CDS 20.0%
!!! GCTTATACATAAGTAATTTT+AGG - chr6.2:74519531-74519550 MS.gene27432:CDS 20.0%
!!! TATCTAACATTTTAAGCTTT+TGG + chr6.2:74519299-74519318 None:intergenic 20.0%
!!! TTTTCATTACTTCTAAGTTA+TGG - chr6.2:74518524-74518543 MS.gene27432:intron 20.0%
! ATGGAAGATTGTTATAGATT+AGG - chr6.2:74518821-74518840 MS.gene27432:intron 25.0%
! GTTTCCAATCAAATATTTCA+AGG + chr6.2:74519711-74519730 None:intergenic 25.0%
! TTATGAAATTCACTCGATTT+AGG - chr6.2:74519019-74519038 MS.gene27432:CDS 25.0%
!!! TTATTTTGTCCAATTCTTCT+TGG + chr6.2:74519738-74519757 None:intergenic 25.0%
AAATGCAAACTGAAAAAAGG+AGG + chr6.2:74518621-74518640 None:intergenic 30.0%
AATGCAAACTGAAAAAAGGA+GGG + chr6.2:74518620-74518639 None:intergenic 30.0%
AGATTGAAAGAAGATGTTGA+AGG - chr6.2:74518740-74518759 MS.gene27432:intron 30.0%
ATGAGGTGATACTAAATTCA+GGG - chr6.2:74518302-74518321 MS.gene27432:CDS 30.0%
CTGCACTAAGAAATTTAAAG+AGG + chr6.2:74519327-74519346 None:intergenic 30.0%
GAAACTAAACCAAGAAGAAT+TGG - chr6.2:74519726-74519745 MS.gene27432:CDS 30.0%
TACGAACATAAATACTTGTG+AGG - chr6.2:74519353-74519372 MS.gene27432:CDS 30.0%
TTTGATACAGCTTCTATCTA+TGG - chr6.2:74518430-74518449 MS.gene27432:CDS 30.0%
! CATGTTCCTTTTATGTCAAA+GGG + chr6.2:74518794-74518813 None:intergenic 30.0%
! TGAAAAGCTTTAACAAAGAG+AGG - chr6.2:74519674-74519693 MS.gene27432:CDS 30.0%
!!! ATTTTTTAGGAATCTGAGGT+TGG - chr6.2:74518682-74518701 MS.gene27432:intron 30.0%
!!! TGCAATTTTTTAGGAATCTG+AGG - chr6.2:74518678-74518697 MS.gene27432:intron 30.0%
!!! TTTCATCGCGATTTTTTATG+AGG + chr6.2:74518504-74518523 None:intergenic 30.0%
AAAAGGAACATGGAAAGCTA+TGG - chr6.2:74518802-74518821 MS.gene27432:intron 35.0%
AAATGGACCTTACAAATCCT+TGG - chr6.2:74519807-74519826 MS.gene27432:CDS 35.0%
AAGATGCCAATAATAGGACT+CGG - chr6.2:74518328-74518347 MS.gene27432:CDS 35.0%
AATACTTTGTATGCTCCCAA+TGG + chr6.2:74519125-74519144 None:intergenic 35.0%
ACATCTTCTTTCAATCTCAC+TGG + chr6.2:74518737-74518756 None:intergenic 35.0%
AGAGAATGATGCTTGCTTTA+GGG + chr6.2:74518596-74518615 None:intergenic 35.0%
AGGTAGAAATGAATCCATCA+TGG - chr6.2:74519039-74519058 MS.gene27432:CDS 35.0%
ATTGGAAACAGCTAATGACA+TGG - chr6.2:74519403-74519422 MS.gene27432:CDS 35.0%
CATGAGGTGATACTAAATTC+AGG - chr6.2:74518301-74518320 MS.gene27432:CDS 35.0%
CCTTTGACATAAAAGGAACA+TGG - chr6.2:74518792-74518811 MS.gene27432:intron 35.0%
CTGAATTTAGTATCACCTCA+TGG + chr6.2:74518303-74518322 None:intergenic 35.0%
GTGATTCCCTTTGACATAAA+AGG - chr6.2:74518785-74518804 MS.gene27432:intron 35.0%
GTTGCTAACACCAATAGATT+TGG + chr6.2:74518852-74518871 None:intergenic 35.0%
TAAGATGGATACATGAGCAA+GGG - chr6.2:74519638-74519657 MS.gene27432:CDS 35.0%
TAGAGAATGATGCTTGCTTT+AGG + chr6.2:74518597-74518616 None:intergenic 35.0%
TATGGAGAATCCTATTCTTC+AGG - chr6.2:74519163-74519182 MS.gene27432:intron 35.0%
TATTCTTCAGGAAATTGCTG+AGG - chr6.2:74519175-74519194 MS.gene27432:intron 35.0%
TCAGCAATTTCCTGAAGAAT+AGG + chr6.2:74519176-74519195 None:intergenic 35.0%
TCTTATACCTGATTAACTGC+CGG + chr6.2:74518923-74518942 None:intergenic 35.0%
TGAGGTGATACTAAATTCAG+GGG - chr6.2:74518303-74518322 MS.gene27432:CDS 35.0%
TGGATCTCTATTTGATTCAC+TGG - chr6.2:74518711-74518730 MS.gene27432:intron 35.0%
TTAGGCTTAGCCAAATCTAT+TGG - chr6.2:74518839-74518858 MS.gene27432:intron 35.0%
TTATGACTTATGAGAGCTCA+TGG - chr6.2:74519380-74519399 MS.gene27432:CDS 35.0%
! CCATGTTCCTTTTATGTCAA+AGG + chr6.2:74518795-74518814 None:intergenic 35.0%
! TAGAAATAAGAGTGTAGCAC+AGG - chr6.2:74519199-74519218 MS.gene27432:intron 35.0%
! TGAAGCTCTCACTTCAATTT+TGG - chr6.2:74518378-74518397 MS.gene27432:CDS 35.0%
!! GGAGCATACAAAGTATTTTG+GGG - chr6.2:74519128-74519147 MS.gene27432:intron 35.0%
!! GGGAGCATACAAAGTATTTT+GGG - chr6.2:74519127-74519146 MS.gene27432:intron 35.0%
!! GTGTCAAAAGCTTTAGAGAT+CGG - chr6.2:74518478-74518497 MS.gene27432:CDS 35.0%
!! TCTATTGGTGTTAGCAACTT+TGG - chr6.2:74518854-74518873 MS.gene27432:intron 35.0%
!! TGGGAGCATACAAAGTATTT+TGG - chr6.2:74519126-74519145 MS.gene27432:intron 35.0%
!!! TTTTGAGAGCATTGAGAACA+AGG + chr6.2:74518570-74518589 None:intergenic 35.0%
AAACGACAGTGAAGAGCTTA+CGG + chr6.2:74519453-74519472 None:intergenic 40.0%
ACTTATGAGAGCTCATGGAT+TGG - chr6.2:74519385-74519404 MS.gene27432:CDS 40.0%
AGAGCTTCATTTGATGGAAG+AGG + chr6.2:74518367-74518386 None:intergenic 40.0%
AGCTCTTCCAAGGATTTGTA+AGG + chr6.2:74519817-74519836 None:intergenic 40.0%
AGGGAATTCTGCATGAAGAA+AGG - chr6.2:74519077-74519096 MS.gene27432:CDS 40.0%
ATGAATCCATCATGGCAACA+AGG - chr6.2:74519047-74519066 MS.gene27432:CDS 40.0%
ATGTCTGTAGCCAATGTCAA+TGG + chr6.2:74518410-74518429 None:intergenic 40.0%
CAAAAAGCTTTCCGTACTCT+TGG - chr6.2:74518880-74518899 MS.gene27432:intron 40.0%
CTAAGATGGATACATGAGCA+AGG - chr6.2:74519637-74519656 MS.gene27432:CDS 40.0%
GAAGTGAGAGCTTCATTTGA+TGG + chr6.2:74518373-74518392 None:intergenic 40.0%
GGAATATGCAACCATTTCAC+CGG - chr6.2:74518901-74518920 MS.gene27432:intron 40.0%
GGGAATTCTGCATGAAGAAA+GGG - chr6.2:74519078-74519097 MS.gene27432:CDS 40.0%
GGGGAAAAGATGCCAATAAT+AGG - chr6.2:74518322-74518341 MS.gene27432:CDS 40.0%
GGTTGCATATTCCAAGAGTA+CGG + chr6.2:74518894-74518913 None:intergenic 40.0%
TCCACAATGCAGACTTTACA+AGG - chr6.2:74519765-74519784 MS.gene27432:CDS 40.0%
TCTTGCAGATAGCACTAAGA+TGG - chr6.2:74519623-74519642 MS.gene27432:CDS 40.0%
TGAATCCATCATGGCAACAA+GGG - chr6.2:74519048-74519067 MS.gene27432:CDS 40.0%
! GTTGAAGGCTTTAACTTCAC+AGG - chr6.2:74518755-74518774 MS.gene27432:intron 40.0%
! TATGGTACCGAAAAACCTCT+AGG - chr6.2:74518448-74518467 MS.gene27432:CDS 40.0%
! TTGGTTGATGCCATTGACAT+TGG - chr6.2:74518397-74518416 MS.gene27432:CDS 40.0%
!!! GCTTTTGGAACAGTTTGTTC+TGG + chr6.2:74519284-74519303 None:intergenic 40.0%
ACAAATCCTTGGAAGAGCTG+TGG - chr6.2:74519818-74519837 MS.gene27432:CDS 45.0%
AGTTTCCCTTGTTGCCATGA+TGG + chr6.2:74519056-74519075 None:intergenic 45.0%
ATGGCAACAAGGGAAACTCA+GGG - chr6.2:74519058-74519077 MS.gene27432:CDS 45.0%
CAAATCCTTGGAAGAGCTGT+GGG - chr6.2:74519819-74519838 MS.gene27432:CDS 45.0%
CATTTCACCGGCAGTTAATC+AGG - chr6.2:74518913-74518932 MS.gene27432:intron 45.0%
CTGATTAACTGCCGGTGAAA+TGG + chr6.2:74518915-74518934 None:intergenic 45.0%
GCAGTTCCGAGTCCTATTAT+TGG + chr6.2:74518337-74518356 None:intergenic 45.0%
GCCTTGTAAAGTCTGCATTG+TGG + chr6.2:74519769-74519788 None:intergenic 45.0%
GGAGGCAAATAAACTCCATG+AGG - chr6.2:74518285-74518304 MS.gene27432:CDS 45.0%
! AGCTACGCCTAGAGGTTTTT+CGG + chr6.2:74518458-74518477 None:intergenic 45.0%
! AGGCTTTAACTTCACAGGAG+AGG - chr6.2:74518760-74518779 MS.gene27432:intron 45.0%
! GAATCTGAGGTTGGAGTATG+TGG - chr6.2:74518691-74518710 MS.gene27432:intron 45.0%
! TTGGGGCTCTAATGCTGTTA+TGG - chr6.2:74519145-74519164 MS.gene27432:intron 45.0%
!! GAATGATGCTTGCTTTAGGG+TGG + chr6.2:74518593-74518612 None:intergenic 45.0%
CATGGCAACAAGGGAAACTC+AGG - chr6.2:74519057-74519076 MS.gene27432:CDS 50.0%
TTTGACACAGCTACGCCTAG+AGG + chr6.2:74518466-74518485 None:intergenic 50.0%
AAGGGATCCATGTGTGTGCG+TGG - chr6.2:74519096-74519115 MS.gene27432:intron 55.0%
ACCATCCCACAGCTCTTCCA+AGG + chr6.2:74519827-74519846 None:intergenic 55.0%
ATGGTGACCACGCACACACA+TGG + chr6.2:74519106-74519125 None:intergenic 55.0%
GTGTGTGCGTGGTCACCATT+GGG - chr6.2:74519107-74519126 MS.gene27432:intron 55.0%
TCCTTGGAAGAGCTGTGGGA+TGG - chr6.2:74519823-74519842 MS.gene27432:CDS 55.0%
TGTGTGTGCGTGGTCACCAT+TGG - chr6.2:74519106-74519125 MS.gene27432:intron 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 74518283 74519855 74518283 ID=MS.gene27432
chr6.2 mRNA 74518283 74519855 74518283 ID=MS.gene27432.t1;Parent=MS.gene27432
chr6.2 exon 74519508 74519855 74519508 ID=MS.gene27432.t1.exon1;Parent=MS.gene27432.t1
chr6.2 CDS 74519508 74519855 74519508 ID=cds.MS.gene27432.t1;Parent=MS.gene27432.t1
chr6.2 exon 74519204 74519431 74519204 ID=MS.gene27432.t1.exon2;Parent=MS.gene27432.t1
chr6.2 CDS 74519204 74519431 74519204 ID=cds.MS.gene27432.t1;Parent=MS.gene27432.t1
chr6.2 exon 74518918 74519097 74518918 ID=MS.gene27432.t1.exon3;Parent=MS.gene27432.t1
chr6.2 CDS 74518918 74519097 74518918 ID=cds.MS.gene27432.t1;Parent=MS.gene27432.t1
chr6.2 exon 74518283 74518507 74518283 ID=MS.gene27432.t1.exon4;Parent=MS.gene27432.t1
chr6.2 CDS 74518283 74518507 74518283 ID=cds.MS.gene27432.t1;Parent=MS.gene27432.t1
Gene Sequence

>MS.gene27432

ATGGAGGCAAATAAACTCCATGAGGTGATACTAAATTCAGGGGAAAAGATGCCAATAATAGGACTCGGAACTGCTACATTTCCTCTTCCATCAAATGAAGCTCTCACTTCAATTTTGGTTGATGCCATTGACATTGGCTACAGACATTTTGATACAGCTTCTATCTATGGTACCGAAAAACCTCTAGGCGTAGCTGTGTCAAAAGCTTTAGAGATCGGCCTCATAAAAAATCGCGATGAAATTTTCATTACTTCTAAGTTATGGTGCACTGATGCTCATCATGACCTTGTTCTCAATGCTCTCAAAACCACCCTAAAGCAAGCATCATTCTCTACCCTCCTTTTTTCAGTTTGCATTTTTTCATTCTCTAATTTTTATTTTTTTATATTTTTTGTTGCAATTTTTTAGGAATCTGAGGTTGGAGTATGTGGATCTCTATTTGATTCACTGGCCAGTGAGATTGAAAGAAGATGTTGAAGGCTTTAACTTCACAGGAGAGGATGTGATTCCCTTTGACATAAAAGGAACATGGAAAGCTATGGAAGATTGTTATAGATTAGGCTTAGCCAAATCTATTGGTGTTAGCAACTTTGGTATCAAAAAGCTTTCCGTACTCTTGGAATATGCAACCATTTCACCGGCAGTTAATCAGGTATAAGAAGTAATCAAATGAATTAACTGAGTATTTGTACGAGTCATTAACCAATCAATATTACGTTAATACTAATATAACGTGTTATGAAATTCACTCGATTTAGGTAGAAATGAATCCATCATGGCAACAAGGGAAACTCAGGGAATTCTGCATGAAGAAAGGGATCCATGTGTGTGCGTGGTCACCATTGGGAGCATACAAAGTATTTTGGGGCTCTAATGCTGTTATGGAGAATCCTATTCTTCAGGAAATTGCTGAGGCTAGAAATAAGAGTGTAGCACAGGTGCAATTGATTTCATATTTCAAACTATTTTCAATCAAAACTTAGTACTATTGATCTTGTCCAGAACAAACTGTTCCAAAAGCTTAAAATGTTAGATAAAAGGCCTCTTTAAATTTCTTAGTGCAGCTTATCTACGAACATAAATACTTGTGAGGCAGATTATGACTTATGAGAGCTCATGGATTGGAAACAGCTAATGACATGGTCATAAGCTCTTTTCAGCTTATTTCCGTAAGCTCTTCACTGTCGTTTATGCAAATAATTTATAAGAAAAAAGTTTGACTTTATTTTAACTTTTGTTATAAAAATAGCTTATACATAAGTAATTTTAGGATAAACATCATATGCACACTAATTAATTGTGATGAGTGTTATGCTTAAAGTCAATGTCTAACTTGTTTATCTTGCAGATAGCACTAAGATGGATACATGAGCAAGGGACAAGTGTAATTGTGAAAAGCTTTAACAAAGAGAGGATGAAACAAAACCTTGAAATATTTGATTGGAAACTAAACCAAGAAGAATTGGACAAAATAAATAAGATTCCACAATGCAGACTTTACAAGGCTGAAATGTTTTTATCTGAAAATGGACCTTACAAATCCTTGGAAGAGCTGTGGGATGGTGACCCTTGA
Protein sequence

>MS.gene27432.t1

MEANKLHEVILNSGEKMPIIGLGTATFPLPSNEALTSILVDAIDIGYRHFDTASIYGTEKPLGVAVSKALEIGLIKNRDEIFITSKLWCTDAHHDLVLNALKTTLKQASFSTLLFSYVDLYLIHWPVRLKEDVEGFNFTGEDVIPFDIKGTWKAMEDCYRLGLAKSIGVSNFGIKKLSVLLEYATISPAVNQVEMNPSWQQGKLREFCMKKGIHVCAWSPLGAYKVFWGSNAVMENPILQEIAEARNKSVAQIALRWIHEQGTSVIVKSFNKERMKQNLEIFDWKLNQEELDKINKIPQCRLYKAEMFLSENGPYKSLEELWDGDP