Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27521.t1 | AES79871.2 | 97.3 | 328 | 8 | 1 | 1 | 328 | 1 | 327 | 8.80E-159 | 569.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27521.t1 | Q9C9Z2 | 73.6 | 231 | 57 | 2 | 86 | 313 | 98 | 327 | 7.6e-95 | 348.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27521.t1 | A0A072UBT7 | 97.3 | 328 | 8 | 1 | 1 | 328 | 1 | 327 | 6.3e-159 | 569.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057246 | MS.gene27521 | 0.803827 | 2.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27521.t1 | MTR_7g074090 | 96.646 | 328 | 10 | 1 | 1 | 328 | 19 | 345 | 0.0 | 634 |
| MS.gene27521.t1 | MTR_7g074090 | 96.646 | 328 | 10 | 1 | 1 | 328 | 1 | 327 | 0.0 | 633 |
| MS.gene27521.t1 | MTR_7g074090 | 96.646 | 328 | 10 | 1 | 1 | 328 | 1 | 327 | 0.0 | 632 |
| MS.gene27521.t1 | MTR_7g074070 | 77.410 | 332 | 64 | 4 | 1 | 322 | 1 | 331 | 3.89e-161 | 454 |
| MS.gene27521.t1 | MTR_7g064130 | 34.052 | 232 | 127 | 8 | 97 | 308 | 223 | 448 | 7.39e-29 | 115 |
| MS.gene27521.t1 | MTR_0013s0150 | 32.328 | 232 | 136 | 6 | 95 | 309 | 151 | 378 | 2.92e-28 | 113 |
| MS.gene27521.t1 | MTR_2g084605 | 33.190 | 232 | 129 | 8 | 97 | 308 | 167 | 392 | 5.25e-25 | 104 |
| MS.gene27521.t1 | MTR_4g077000 | 30.131 | 229 | 143 | 4 | 95 | 308 | 162 | 388 | 3.45e-23 | 99.4 |
| MS.gene27521.t1 | MTR_3g033620 | 28.879 | 232 | 142 | 7 | 95 | 309 | 163 | 388 | 3.81e-23 | 99.0 |
| MS.gene27521.t1 | MTR_3g071970 | 27.236 | 246 | 154 | 6 | 93 | 316 | 482 | 724 | 7.65e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27521.t1 | AT3G08640 | 69.323 | 251 | 69 | 3 | 78 | 325 | 90 | 335 | 2.24e-123 | 357 |
| MS.gene27521.t1 | AT3G08630 | 71.311 | 244 | 65 | 3 | 86 | 325 | 95 | 337 | 7.62e-120 | 348 |
| MS.gene27521.t1 | AT2G37860 | 32.258 | 248 | 141 | 8 | 83 | 308 | 190 | 432 | 3.54e-28 | 113 |
| MS.gene27521.t1 | AT2G37860 | 32.258 | 248 | 141 | 8 | 83 | 308 | 190 | 432 | 3.54e-28 | 113 |
| MS.gene27521.t1 | AT5G22790 | 34.061 | 229 | 132 | 7 | 97 | 308 | 207 | 433 | 8.93e-27 | 109 |
| MS.gene27521.t1 | AT5G12470 | 30.172 | 232 | 143 | 5 | 95 | 310 | 157 | 385 | 2.85e-24 | 102 |
| MS.gene27521.t1 | AT3G56140 | 26.667 | 240 | 157 | 5 | 89 | 309 | 251 | 490 | 1.22e-17 | 84.0 |
| MS.gene27521.t1 | AT2G40400 | 27.917 | 240 | 152 | 7 | 89 | 308 | 461 | 699 | 1.67e-17 | 84.0 |
| MS.gene27521.t1 | AT2G40400 | 27.917 | 240 | 152 | 7 | 89 | 308 | 461 | 699 | 1.67e-17 | 84.0 |
| MS.gene27521.t1 | AT3G56140 | 26.778 | 239 | 156 | 5 | 89 | 308 | 470 | 708 | 2.65e-17 | 83.2 |
| MS.gene27521.t1 | AT3G56140 | 26.778 | 239 | 156 | 5 | 89 | 308 | 470 | 708 | 2.65e-17 | 83.2 |
| MS.gene27521.t1 | AT2G37860 | 28.125 | 160 | 97 | 4 | 83 | 226 | 190 | 347 | 4.65e-12 | 66.6 |
| MS.gene27521.t1 | AT2G37860 | 28.125 | 160 | 97 | 4 | 83 | 226 | 190 | 347 | 4.65e-12 | 66.6 |
| MS.gene27521.t1 | AT2G40400 | 25.131 | 191 | 125 | 4 | 89 | 262 | 461 | 650 | 8.59e-12 | 66.6 |
| MS.gene27521.t1 | AT5G24690 | 29.508 | 183 | 102 | 5 | 99 | 267 | 240 | 409 | 1.04e-11 | 66.2 |
Find 106 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGGTGCCTATAGTTTAT+TGG | 0.200815 | 7.3:+31038967 | MS.gene27521:CDS |
| TGTTGGAGGGGATGGTGGTG+GGG | 0.239897 | 7.3:+31038574 | MS.gene27521:CDS |
| TCTCACTTGGGCTGCTCATA+TGG | 0.247103 | 7.3:+31039153 | MS.gene27521:CDS |
| ATGGCTACTAGGCCTAATTT+TGG | 0.248476 | 7.3:+31038794 | MS.gene27521:CDS |
| CGATCCACAGTTTCCTTTCA+AGG | 0.273759 | 7.3:+31038724 | MS.gene27521:CDS |
| TTTGTTGGAGGGGATGGTGG+TGG | 0.275850 | 7.3:+31038572 | MS.gene27521:CDS |
| AATGTAGGTGGAGGCTTGTT+TGG | 0.286617 | 7.3:-31039121 | None:intergenic |
| AAGTCAGGTGATTCATCTTT+TGG | 0.290733 | 7.3:+31038656 | MS.gene27521:CDS |
| AGTTCATTCAACCCAAAATT+AGG | 0.294007 | 7.3:-31038806 | None:intergenic |
| GTTGGAGGGGATGGTGGTGG+GGG | 0.308403 | 7.3:+31038575 | MS.gene27521:CDS |
| TTTGGAACTTTGGTGTATAA+AGG | 0.311619 | 7.3:+31038995 | MS.gene27521:CDS |
| GTTTCAACCTTTGAGGCAAA+TGG | 0.317585 | 7.3:-31038544 | None:intergenic |
| ATGTAGGTGGAGGCTTGTTT+GGG | 0.323476 | 7.3:-31039120 | None:intergenic |
| TGGTGGTGGAGATGGAAATT+CGG | 0.330418 | 7.3:+31038619 | MS.gene27521:CDS |
| GTTGGTCGTGGTGGTGGTGG+TGG | 0.332421 | 7.3:+31038599 | MS.gene27521:CDS |
| TTGTTGGAGGGGATGGTGGT+GGG | 0.333341 | 7.3:+31038573 | MS.gene27521:CDS |
| GGTTCAAACATGTGACTCTT+AGG | 0.337899 | 7.3:-31038947 | None:intergenic |
| TCACAATTGGAGGTTGGATT+AGG | 0.342575 | 7.3:+31039364 | MS.gene27521:CDS |
| GGAGTTGGTCGTGGTGGTGG+TGG | 0.354212 | 7.3:+31038596 | MS.gene27521:CDS |
| ACTCAACCCCATTGAGAGTT+TGG | 0.360058 | 7.3:-31039198 | None:intergenic |
| ATTGGATAGGTTTGGAACTT+TGG | 0.360848 | 7.3:+31038985 | MS.gene27521:CDS |
| TTCTGAATGGTTGGAGATCA+AGG | 0.362688 | 7.3:+31038693 | MS.gene27521:CDS |
| GGAGAAAGTGCTTAATCCTT+TGG | 0.363328 | 7.3:+31039228 | MS.gene27521:CDS |
| AACTGAGGTTGCGGAAATAA+TGG | 0.363963 | 7.3:-31038488 | None:intergenic |
| TACAGATCAAATGGAAACTA+TGG | 0.365842 | 7.3:+31038409 | None:intergenic |
| TATAGTTTATTGGATAGGTT+TGG | 0.365890 | 7.3:+31038977 | MS.gene27521:CDS |
| CTCACTTGGGCTGCTCATAT+GGG | 0.366434 | 7.3:+31039154 | MS.gene27521:CDS |
| GGGCTAGGTGCGGGTCTTGT+TGG | 0.369480 | 7.3:+31039037 | MS.gene27521:CDS |
| GGTGGTGGAGATGGAAATTC+GGG | 0.372633 | 7.3:+31038620 | MS.gene27521:CDS |
| CTTGTTTGGGGACTCAAAGC+TGG | 0.378323 | 7.3:-31039107 | None:intergenic |
| AAGCTAAGTTTCAACCTTTG+AGG | 0.381239 | 7.3:-31038551 | None:intergenic |
| AGACCTCAGTTGTGGTTCTC+AGG | 0.383144 | 7.3:+31039257 | MS.gene27521:CDS |
| TTGAGGCAAATGGGTTGGTT+TGG | 0.392267 | 7.3:-31038534 | None:intergenic |
| AGGTTGAAACTTAGCTTTGT+TGG | 0.393032 | 7.3:+31038557 | MS.gene27521:CDS |
| AGGTGTGCGAACAATGTTCT+TGG | 0.403297 | 7.3:+31039277 | MS.gene27521:CDS |
| CATTGCTGAATGGTCTCACT+TGG | 0.404560 | 7.3:+31039140 | MS.gene27521:CDS |
| GCCATTGTTGGGCTAGGTGC+GGG | 0.408601 | 7.3:+31039028 | MS.gene27521:CDS |
| CTTAGCTTTGTTGGAGGGGA+TGG | 0.412949 | 7.3:+31038566 | MS.gene27521:CDS |
| GTTGGAACAGCACTTTCAAA+TGG | 0.416673 | 7.3:+31039055 | MS.gene27521:CDS |
| GGTGTGCGAACAATGTTCTT+GGG | 0.418885 | 7.3:+31039278 | MS.gene27521:CDS |
| AAACCTATCCAATAAACTAT+AGG | 0.423191 | 7.3:-31038975 | None:intergenic |
| GGAAATTCGGGAGGTGATGA+TGG | 0.424238 | 7.3:+31038632 | MS.gene27521:CDS |
| GTGCCTATAGTTTATTGGAT+AGG | 0.425685 | 7.3:+31038972 | MS.gene27521:CDS |
| GTGATGTTGGCAAGGTTGAC+AGG | 0.427456 | 7.3:+31039313 | MS.gene27521:CDS |
| CTCAGGTACCAAACTCTCAA+TGG | 0.432392 | 7.3:+31039190 | MS.gene27521:CDS |
| TCAGGTACCAAACTCTCAAT+GGG | 0.440391 | 7.3:+31039191 | MS.gene27521:CDS |
| TGAGAAGAAGCCATCACAAT+TGG | 0.446713 | 7.3:+31039351 | MS.gene27521:CDS |
| CAAGGTTCTGAGCGAGGAGT+TGG | 0.461312 | 7.3:+31038742 | MS.gene27521:CDS |
| TATCTGTTGGCACCAACATT+GGG | 0.462339 | 7.3:+31038884 | MS.gene27521:CDS |
| TTTCAACCTTTGAGGCAAAT+GGG | 0.463281 | 7.3:-31038543 | None:intergenic |
| AACCAACCCATTTGCCTCAA+AGG | 0.474724 | 7.3:+31038537 | MS.gene27521:CDS |
| TGGGTACGTTTCTGAATGGT+TGG | 0.486586 | 7.3:+31038684 | MS.gene27521:CDS |
| AGCTTTGTTGGAGGGGATGG+TGG | 0.486688 | 7.3:+31038569 | MS.gene27521:CDS |
| TTGGAACAGCACTTTCAAAT+GGG | 0.488566 | 7.3:+31039056 | MS.gene27521:CDS |
| GGAGGTGATGATGGAAAGTC+AGG | 0.497516 | 7.3:+31038641 | MS.gene27521:CDS |
| TGCCATTGTTGGGCTAGGTG+CGG | 0.498406 | 7.3:+31039027 | MS.gene27521:CDS |
| AGTGCATGACTCTGACCAAA+TGG | 0.499488 | 7.3:-31038452 | None:intergenic |
| AACAGCACTTTCAAATGGGT+TGG | 0.504935 | 7.3:+31039060 | MS.gene27521:CDS |
| AACCTTTGAGGCAAATGGGT+TGG | 0.505493 | 7.3:-31038539 | None:intergenic |
| GTGAGACCATTCAGCAATGT+AGG | 0.514573 | 7.3:-31039136 | None:intergenic |
| GAAACTTAGCTTTGTTGGAG+GGG | 0.522668 | 7.3:+31038562 | MS.gene27521:CDS |
| GGTATTCAAGACCTCAGTTG+TGG | 0.525273 | 7.3:+31039249 | MS.gene27521:CDS |
| TTGAAACTTAGCTTTGTTGG+AGG | 0.527400 | 7.3:+31038560 | MS.gene27521:CDS |
| GTATCTGTTGGCACCAACAT+TGG | 0.527660 | 7.3:+31038883 | MS.gene27521:CDS |
| CAATTATGAAACTGAGGTTG+CGG | 0.533344 | 7.3:-31038497 | None:intergenic |
| TGGGTTTCAGCAGCAACCTC+AGG | 0.535353 | 7.3:+31039173 | MS.gene27521:CDS |
| CCTCCACCTACATTGCTGAA+TGG | 0.535956 | 7.3:+31039130 | MS.gene27521:CDS |
| TGAAACTTAGCTTTGTTGGA+GGG | 0.537812 | 7.3:+31038561 | MS.gene27521:CDS |
| GGAGGTTGGATTAGGTGAGA+AGG | 0.538906 | 7.3:+31039372 | MS.gene27521:CDS |
| GAAGAAGCCATCACAATTGG+AGG | 0.539032 | 7.3:+31039354 | MS.gene27521:CDS |
| TTGTTTGGGGACTCAAAGCT+GGG | 0.541835 | 7.3:-31039106 | None:intergenic |
| TCCTTTCAAGGTTCTGAGCG+AGG | 0.543017 | 7.3:+31038736 | MS.gene27521:CDS |
| TCCTCGCTCAGAACCTTGAA+AGG | 0.543217 | 7.3:-31038737 | None:intergenic |
| GGTCAGTACGAGGAAGAAGA+TGG | 0.546188 | 7.3:+31039081 | MS.gene27521:CDS |
| AAGCCATCACAATTGGAGGT+TGG | 0.549494 | 7.3:+31039358 | MS.gene27521:CDS |
| GTGTGCGAACAATGTTCTTG+GGG | 0.557898 | 7.3:+31039279 | MS.gene27521:CDS |
| TCTGAATGGTTGGAGATCAA+GGG | 0.560720 | 7.3:+31038694 | MS.gene27521:CDS |
| CAATGGGGTTGAGTTCATGT+TGG | 0.565831 | 7.3:+31039207 | MS.gene27521:CDS |
| TGGAGGATTAAAACGCAGAA+GGG | 0.566901 | 7.3:-31038432 | None:intergenic |
| CATTGAGAGTTTGGTACCTG+AGG | 0.567191 | 7.3:-31039189 | None:intergenic |
| GATTAGGTGAGAAGGTTGAA+AGG | 0.569180 | 7.3:+31039380 | MS.gene27521:CDS |
| CCATTCAGCAATGTAGGTGG+AGG | 0.577563 | 7.3:-31039130 | None:intergenic |
| ATGGAGGATTAAAACGCAGA+AGG | 0.579827 | 7.3:-31038433 | None:intergenic |
| GGACAAGATGCAAAGATAGC+CGG | 0.583704 | 7.3:-31038926 | None:intergenic |
| TTGACAGGGTCACAAAATGC+TGG | 0.588376 | 7.3:+31039328 | MS.gene27521:CDS |
| TGTAGGTGGAGGCTTGTTTG+GGG | 0.588831 | 7.3:-31039119 | None:intergenic |
| TCCAATAAACTATAGGCACC+AGG | 0.590594 | 7.3:-31038968 | None:intergenic |
| ACTGTAGCAGATCCCAATGT+TGG | 0.599025 | 7.3:-31038896 | None:intergenic |
| ATCTGCTACAGTCAAAGTGC+CGG | 0.599258 | 7.3:+31038907 | MS.gene27521:CDS |
| AAGAGTCACATGTTTGAACC+TGG | 0.604135 | 7.3:+31038950 | MS.gene27521:CDS |
| AATCCAACCTCCAATTGTGA+TGG | 0.614141 | 7.3:-31039361 | None:intergenic |
| TGATGTTGGCAAGGTTGACA+GGG | 0.615810 | 7.3:+31039314 | MS.gene27521:CDS |
| GTTCTGAGCGAGGAGTTGGT+TGG | 0.616099 | 7.3:+31038746 | MS.gene27521:CDS |
| ACTGAGGTCTTGAATACCAA+AGG | 0.620635 | 7.3:-31039244 | None:intergenic |
| ATTGCTGAATGGTCTCACTT+GGG | 0.621562 | 7.3:+31039141 | MS.gene27521:CDS |
| CAAATGGGTTGGTCAGTACG+AGG | 0.622120 | 7.3:+31039071 | MS.gene27521:CDS |
| ACCCGCACCTAGCCCAACAA+TGG | 0.625809 | 7.3:-31039029 | None:intergenic |
| AGACCATTCAGCAATGTAGG+TGG | 0.628094 | 7.3:-31039133 | None:intergenic |
| CTTGAAAGGAAACTGTGGAT+CGG | 0.632655 | 7.3:-31038723 | None:intergenic |
| AGAACCTTGAAAGGAAACTG+TGG | 0.643443 | 7.3:-31038728 | None:intergenic |
| ATAGAACAATTATGAAACTG+AGG | 0.657815 | 7.3:-31038503 | None:intergenic |
| GCATGACTCTGACCAAATGG+AGG | 0.663317 | 7.3:-31038449 | None:intergenic |
| TGTGCGAACAATGTTCTTGG+GGG | 0.675514 | 7.3:+31039280 | MS.gene27521:CDS |
| GGTGGAGATGGAAATTCGGG+AGG | 0.679926 | 7.3:+31038623 | MS.gene27521:CDS |
| ACACCTGAGAACCACAACTG+AGG | 0.691783 | 7.3:-31039260 | None:intergenic |
| CAGGTACCAAACTCTCAATG+GGG | 0.736143 | 7.3:+31039192 | MS.gene27521:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAACCTATCCAATAAACTAT+AGG | - | chr7.3:31038978-31038997 | None:intergenic | 25.0% |
| ! | ATAGAACAATTATGAAACTG+AGG | - | chr7.3:31038506-31038525 | None:intergenic | 25.0% |
| ! | TATAGTTTATTGGATAGGTT+TGG | + | chr7.3:31038977-31038996 | MS.gene27521:CDS | 25.0% |
| !!! | GATTCATCTTTTGGAATTTT+GGG | + | chr7.3:31038665-31038684 | MS.gene27521:CDS | 25.0% |
| !!! | TGATTCATCTTTTGGAATTT+TGG | + | chr7.3:31038664-31038683 | MS.gene27521:CDS | 25.0% |
| AGTTCATTCAACCCAAAATT+AGG | - | chr7.3:31038809-31038828 | None:intergenic | 30.0% | |
| ! | TTTGGAACTTTGGTGTATAA+AGG | + | chr7.3:31038995-31039014 | MS.gene27521:CDS | 30.0% |
| ! | TTTTACACTCATGTATCTGT+TGG | + | chr7.3:31038871-31038890 | MS.gene27521:CDS | 30.0% |
| !!! | GAACTATTTTTGCCATTGTT+GGG | + | chr7.3:31039017-31039036 | MS.gene27521:CDS | 30.0% |
| !!! | GTTTTTTCAACTCTTGTTGT+TGG | + | chr7.3:31038836-31038855 | MS.gene27521:CDS | 30.0% |
| AAGCTAAGTTTCAACCTTTG+AGG | - | chr7.3:31038554-31038573 | None:intergenic | 35.0% | |
| CAATTATGAAACTGAGGTTG+CGG | - | chr7.3:31038500-31038519 | None:intergenic | 35.0% | |
| GTGCCTATAGTTTATTGGAT+AGG | + | chr7.3:31038972-31038991 | MS.gene27521:CDS | 35.0% | |
| TTGGAACAGCACTTTCAAAT+GGG | + | chr7.3:31039056-31039075 | MS.gene27521:CDS | 35.0% | |
| ! | AAGTCAGGTGATTCATCTTT+TGG | + | chr7.3:31038656-31038675 | MS.gene27521:CDS | 35.0% |
| ! | ATTGGATAGGTTTGGAACTT+TGG | + | chr7.3:31038985-31039004 | MS.gene27521:CDS | 35.0% |
| !! | AGGTTGAAACTTAGCTTTGT+TGG | + | chr7.3:31038557-31038576 | MS.gene27521:CDS | 35.0% |
| !! | ATTTTGGGTACGTTTCTGAA+TGG | + | chr7.3:31038680-31038699 | MS.gene27521:CDS | 35.0% |
| !! | TGAAACTTAGCTTTGTTGGA+GGG | + | chr7.3:31038561-31038580 | MS.gene27521:CDS | 35.0% |
| !! | TTGAAACTTAGCTTTGTTGG+AGG | + | chr7.3:31038560-31038579 | MS.gene27521:CDS | 35.0% |
| !! | TTTCAACCTTTGAGGCAAAT+GGG | - | chr7.3:31038546-31038565 | None:intergenic | 35.0% |
| !!! | GGAACTATTTTTGCCATTGT+TGG | + | chr7.3:31039016-31039035 | MS.gene27521:CDS | 35.0% |
| AACAGCACTTTCAAATGGGT+TGG | + | chr7.3:31039060-31039079 | MS.gene27521:CDS | 40.0% | |
| AACTGAGGTTGCGGAAATAA+TGG | - | chr7.3:31038491-31038510 | None:intergenic | 40.0% | |
| AAGAGTCACATGTTTGAACC+TGG | + | chr7.3:31038950-31038969 | MS.gene27521:CDS | 40.0% | |
| AATCCAACCTCCAATTGTGA+TGG | - | chr7.3:31039364-31039383 | None:intergenic | 40.0% | |
| ACCTGGTGCCTATAGTTTAT+TGG | + | chr7.3:31038967-31038986 | MS.gene27521:CDS | 40.0% | |
| ACTGAGGTCTTGAATACCAA+AGG | - | chr7.3:31039247-31039266 | None:intergenic | 40.0% | |
| AGAACCTTGAAAGGAAACTG+TGG | - | chr7.3:31038731-31038750 | None:intergenic | 40.0% | |
| ATGGAGGATTAAAACGCAGA+AGG | - | chr7.3:31038436-31038455 | None:intergenic | 40.0% | |
| ATTGCTGAATGGTCTCACTT+GGG | + | chr7.3:31039141-31039160 | MS.gene27521:CDS | 40.0% | |
| CTTGAAAGGAAACTGTGGAT+CGG | - | chr7.3:31038726-31038745 | None:intergenic | 40.0% | |
| GATTAGGTGAGAAGGTTGAA+AGG | + | chr7.3:31039380-31039399 | MS.gene27521:CDS | 40.0% | |
| GGTTCAAACATGTGACTCTT+AGG | - | chr7.3:31038950-31038969 | None:intergenic | 40.0% | |
| GTTGGAACAGCACTTTCAAA+TGG | + | chr7.3:31039055-31039074 | MS.gene27521:CDS | 40.0% | |
| TATCTGTTGGCACCAACATT+GGG | + | chr7.3:31038884-31038903 | MS.gene27521:CDS | 40.0% | |
| TCACAATTGGAGGTTGGATT+AGG | + | chr7.3:31039364-31039383 | MS.gene27521:CDS | 40.0% | |
| TCAGGTACCAAACTCTCAAT+GGG | + | chr7.3:31039191-31039210 | MS.gene27521:CDS | 40.0% | |
| TCCAATAAACTATAGGCACC+AGG | - | chr7.3:31038971-31038990 | None:intergenic | 40.0% | |
| TCTGAATGGTTGGAGATCAA+GGG | + | chr7.3:31038694-31038713 | MS.gene27521:CDS | 40.0% | |
| TGAGAAGAAGCCATCACAAT+TGG | + | chr7.3:31039351-31039370 | MS.gene27521:CDS | 40.0% | |
| TGGAGGATTAAAACGCAGAA+GGG | - | chr7.3:31038435-31038454 | None:intergenic | 40.0% | |
| TTCTGAATGGTTGGAGATCA+AGG | + | chr7.3:31038693-31038712 | MS.gene27521:CDS | 40.0% | |
| ! | ATGGCTACTAGGCCTAATTT+TGG | + | chr7.3:31038794-31038813 | MS.gene27521:CDS | 40.0% |
| ! | ATTTTTGCCATTGTTGGGCT+AGG | + | chr7.3:31039022-31039041 | MS.gene27521:CDS | 40.0% |
| ! | GGGAATGACTTTTGTGATGT+TGG | + | chr7.3:31039300-31039319 | MS.gene27521:CDS | 40.0% |
| ! | TGACTTTTGTGATGTTGGCA+AGG | + | chr7.3:31039305-31039324 | MS.gene27521:CDS | 40.0% |
| ! | TGGCTACTAGGCCTAATTTT+GGG | + | chr7.3:31038795-31038814 | MS.gene27521:CDS | 40.0% |
| !! | CTGCGTTTTAATCCTCCATT+TGG | + | chr7.3:31038437-31038456 | MS.gene27521:CDS | 40.0% |
| !! | GAAACTTAGCTTTGTTGGAG+GGG | + | chr7.3:31038562-31038581 | MS.gene27521:CDS | 40.0% |
| !! | GGAGAAAGTGCTTAATCCTT+TGG | + | chr7.3:31039228-31039247 | MS.gene27521:CDS | 40.0% |
| !! | GTTTCAACCTTTGAGGCAAA+TGG | - | chr7.3:31038547-31038566 | None:intergenic | 40.0% |
| !! | TTTTAGGTGACATGGCTACT+AGG | + | chr7.3:31038783-31038802 | MS.gene27521:CDS | 40.0% |
| !!! | TTCTGCTGTTTTAGGTGACA+TGG | + | chr7.3:31038775-31038794 | MS.gene27521:CDS | 40.0% |
| AACCAACCCATTTGCCTCAA+AGG | + | chr7.3:31038537-31038556 | MS.gene27521:CDS | 45.0% | |
| AAGCCATCACAATTGGAGGT+TGG | + | chr7.3:31039358-31039377 | MS.gene27521:CDS | 45.0% | |
| ACTCAACCCCATTGAGAGTT+TGG | - | chr7.3:31039201-31039220 | None:intergenic | 45.0% | |
| ACTGTAGCAGATCCCAATGT+TGG | - | chr7.3:31038899-31038918 | None:intergenic | 45.0% | |
| AGACCATTCAGCAATGTAGG+TGG | - | chr7.3:31039136-31039155 | None:intergenic | 45.0% | |
| AGGTGTGCGAACAATGTTCT+TGG | + | chr7.3:31039277-31039296 | MS.gene27521:CDS | 45.0% | |
| AGTGCATGACTCTGACCAAA+TGG | - | chr7.3:31038455-31038474 | None:intergenic | 45.0% | |
| ATCTGCTACAGTCAAAGTGC+CGG | + | chr7.3:31038907-31038926 | MS.gene27521:CDS | 45.0% | |
| CAATGGGGTTGAGTTCATGT+TGG | + | chr7.3:31039207-31039226 | MS.gene27521:CDS | 45.0% | |
| CAGGTACCAAACTCTCAATG+GGG | + | chr7.3:31039192-31039211 | MS.gene27521:CDS | 45.0% | |
| CATTGAGAGTTTGGTACCTG+AGG | - | chr7.3:31039192-31039211 | None:intergenic | 45.0% | |
| CATTGCTGAATGGTCTCACT+TGG | + | chr7.3:31039140-31039159 | MS.gene27521:CDS | 45.0% | |
| CGATCCACAGTTTCCTTTCA+AGG | + | chr7.3:31038724-31038743 | MS.gene27521:CDS | 45.0% | |
| CTCAGGTACCAAACTCTCAA+TGG | + | chr7.3:31039190-31039209 | MS.gene27521:CDS | 45.0% | |
| GAAGAAGCCATCACAATTGG+AGG | + | chr7.3:31039354-31039373 | MS.gene27521:CDS | 45.0% | |
| GGACAAGATGCAAAGATAGC+CGG | - | chr7.3:31038929-31038948 | None:intergenic | 45.0% | |
| GGTATTCAAGACCTCAGTTG+TGG | + | chr7.3:31039249-31039268 | MS.gene27521:CDS | 45.0% | |
| GGTGTGCGAACAATGTTCTT+GGG | + | chr7.3:31039278-31039297 | MS.gene27521:CDS | 45.0% | |
| GTATCTGTTGGCACCAACAT+TGG | + | chr7.3:31038883-31038902 | MS.gene27521:CDS | 45.0% | |
| GTGAGACCATTCAGCAATGT+AGG | - | chr7.3:31039139-31039158 | None:intergenic | 45.0% | |
| GTGTGCGAACAATGTTCTTG+GGG | + | chr7.3:31039279-31039298 | MS.gene27521:CDS | 45.0% | |
| TGATGTTGGCAAGGTTGACA+GGG | + | chr7.3:31039314-31039333 | MS.gene27521:CDS | 45.0% | |
| TGGGTACGTTTCTGAATGGT+TGG | + | chr7.3:31038684-31038703 | MS.gene27521:CDS | 45.0% | |
| TGTGCGAACAATGTTCTTGG+GGG | + | chr7.3:31039280-31039299 | MS.gene27521:CDS | 45.0% | |
| TTGACAGGGTCACAAAATGC+TGG | + | chr7.3:31039328-31039347 | MS.gene27521:CDS | 45.0% | |
| TTGTTTGGGGACTCAAAGCT+GGG | - | chr7.3:31039109-31039128 | None:intergenic | 45.0% | |
| ! | AATGTAGGTGGAGGCTTGTT+TGG | - | chr7.3:31039124-31039143 | None:intergenic | 45.0% |
| ! | ATGTAGGTGGAGGCTTGTTT+GGG | - | chr7.3:31039123-31039142 | None:intergenic | 45.0% |
| !! | AACCTTTGAGGCAAATGGGT+TGG | - | chr7.3:31038542-31038561 | None:intergenic | 45.0% |
| !! | TGGTGGTGGAGATGGAAATT+CGG | + | chr7.3:31038619-31038638 | MS.gene27521:CDS | 45.0% |
| !! | TTGAGGCAAATGGGTTGGTT+TGG | - | chr7.3:31038537-31038556 | None:intergenic | 45.0% |
| !!! | GGTGTCAGTTCTGCTGTTTT+AGG | + | chr7.3:31038767-31038786 | MS.gene27521:CDS | 45.0% |
| ACACCTGAGAACCACAACTG+AGG | - | chr7.3:31039263-31039282 | None:intergenic | 50.0% | |
| AGACCTCAGTTGTGGTTCTC+AGG | + | chr7.3:31039257-31039276 | MS.gene27521:CDS | 50.0% | |
| CCATTCAGCAATGTAGGTGG+AGG | - | chr7.3:31039133-31039152 | None:intergenic | 50.0% | |
| CCTCCACCTACATTGCTGAA+TGG | + | chr7.3:31039130-31039149 | MS.gene27521:CDS | 50.0% | |
| CTCACTTGGGCTGCTCATAT+GGG | + | chr7.3:31039154-31039173 | MS.gene27521:CDS | 50.0% | |
| CTTGTTTGGGGACTCAAAGC+TGG | - | chr7.3:31039110-31039129 | None:intergenic | 50.0% | |
| GCATGACTCTGACCAAATGG+AGG | - | chr7.3:31038452-31038471 | None:intergenic | 50.0% | |
| GGAAATTCGGGAGGTGATGA+TGG | + | chr7.3:31038632-31038651 | MS.gene27521:CDS | 50.0% | |
| GGTCAGTACGAGGAAGAAGA+TGG | + | chr7.3:31039081-31039100 | MS.gene27521:CDS | 50.0% | |
| GTGATGTTGGCAAGGTTGAC+AGG | + | chr7.3:31039313-31039332 | MS.gene27521:CDS | 50.0% | |
| TCCTCGCTCAGAACCTTGAA+AGG | - | chr7.3:31038740-31038759 | None:intergenic | 50.0% | |
| TCTCACTTGGGCTGCTCATA+TGG | + | chr7.3:31039153-31039172 | MS.gene27521:CDS | 50.0% | |
| ! | GGAGGTTGGATTAGGTGAGA+AGG | + | chr7.3:31039372-31039391 | MS.gene27521:CDS | 50.0% |
| ! | TGTAGGTGGAGGCTTGTTTG+GGG | - | chr7.3:31039122-31039141 | None:intergenic | 50.0% |
| !! | CAAATGGGTTGGTCAGTACG+AGG | + | chr7.3:31039071-31039090 | MS.gene27521:CDS | 50.0% |
| !! | CTTAGCTTTGTTGGAGGGGA+TGG | + | chr7.3:31038566-31038585 | MS.gene27521:CDS | 50.0% |
| !! | GGAGGTGATGATGGAAAGTC+AGG | + | chr7.3:31038641-31038660 | MS.gene27521:CDS | 50.0% |
| !! | GGTGGTGGAGATGGAAATTC+GGG | + | chr7.3:31038620-31038639 | MS.gene27521:CDS | 50.0% |
| !! | TCCTTTCAAGGTTCTGAGCG+AGG | + | chr7.3:31038736-31038755 | MS.gene27521:CDS | 50.0% |
| GGTGGAGATGGAAATTCGGG+AGG | + | chr7.3:31038623-31038642 | MS.gene27521:CDS | 55.0% | |
| TGGGTTTCAGCAGCAACCTC+AGG | + | chr7.3:31039173-31039192 | MS.gene27521:CDS | 55.0% | |
| ! | GTTCTGAGCGAGGAGTTGGT+TGG | + | chr7.3:31038746-31038765 | MS.gene27521:CDS | 55.0% |
| ! | TGCCATTGTTGGGCTAGGTG+CGG | + | chr7.3:31039027-31039046 | MS.gene27521:CDS | 55.0% |
| ! | TTGTTGGAGGGGATGGTGGT+GGG | + | chr7.3:31038573-31038592 | MS.gene27521:CDS | 55.0% |
| ! | TTTGTTGGAGGGGATGGTGG+TGG | + | chr7.3:31038572-31038591 | MS.gene27521:CDS | 55.0% |
| !! | AGCTTTGTTGGAGGGGATGG+TGG | + | chr7.3:31038569-31038588 | MS.gene27521:CDS | 55.0% |
| !! | CAAGGTTCTGAGCGAGGAGT+TGG | + | chr7.3:31038742-31038761 | MS.gene27521:CDS | 55.0% |
| ACCCGCACCTAGCCCAACAA+TGG | - | chr7.3:31039032-31039051 | None:intergenic | 60.0% | |
| ! | GCCATTGTTGGGCTAGGTGC+GGG | + | chr7.3:31039028-31039047 | MS.gene27521:CDS | 60.0% |
| ! | TGTTGGAGGGGATGGTGGTG+GGG | + | chr7.3:31038574-31038593 | MS.gene27521:CDS | 60.0% |
| ! | GGGCTAGGTGCGGGTCTTGT+TGG | + | chr7.3:31039037-31039056 | MS.gene27521:CDS | 65.0% |
| !! | GGAGTTGGTCGTGGTGGTGG+TGG | + | chr7.3:31038596-31038615 | MS.gene27521:CDS | 65.0% |
| !! | GGTGGTGGTGGTGGTGGAGA+TGG | + | chr7.3:31038611-31038630 | MS.gene27521:CDS | 65.0% |
| !! | GTTGGAGGGGATGGTGGTGG+GGG | + | chr7.3:31038575-31038594 | MS.gene27521:CDS | 65.0% |
| !! | GTTGGTCGTGGTGGTGGTGG+TGG | + | chr7.3:31038599-31038618 | MS.gene27521:CDS | 65.0% |
| ! | GGGGGAGTTGGTCGTGGTGG+TGG | + | chr7.3:31038593-31038612 | MS.gene27521:CDS | 70.0% |
| ! | GGTGGGGGAGTTGGTCGTGG+TGG | + | chr7.3:31038590-31038609 | MS.gene27521:CDS | 70.0% |
| !! | CGTGGTGGTGGTGGTGGTGG+TGG | + | chr7.3:31038605-31038624 | MS.gene27521:CDS | 70.0% |
| !! | GGGGATGGTGGTGGGGGAGT+TGG | + | chr7.3:31038581-31038600 | MS.gene27521:CDS | 70.0% |
| !! | GGTCGTGGTGGTGGTGGTGG+TGG | + | chr7.3:31038602-31038621 | MS.gene27521:CDS | 70.0% |
| !! | GGTGGTGGGGGAGTTGGTCG+TGG | + | chr7.3:31038587-31038606 | MS.gene27521:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 31038419 | 31039405 | 31038419 | ID=MS.gene27521 |
| chr7.3 | mRNA | 31038419 | 31039405 | 31038419 | ID=MS.gene27521.t1;Parent=MS.gene27521 |
| chr7.3 | exon | 31038419 | 31039405 | 31038419 | ID=MS.gene27521.t1.exon1;Parent=MS.gene27521.t1 |
| chr7.3 | CDS | 31038419 | 31039405 | 31038419 | ID=cds.MS.gene27521.t1;Parent=MS.gene27521.t1 |
| Gene Sequence |
| Protein sequence |
