Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27543.t1 | XP_003623694.1 | 99.5 | 419 | 2 | 0 | 1 | 419 | 19 | 437 | 4.90E-239 | 836.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27543.t1 | Q8GXZ3 | 79.2 | 414 | 78 | 5 | 6 | 419 | 5 | 410 | 1.1e-181 | 637.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27543.t1 | G7KZ96 | 99.5 | 419 | 2 | 0 | 1 | 419 | 19 | 437 | 3.5e-239 | 836.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058535 | MS.gene27543 | 0.960875 | 4.70E-119 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGCCAAGCTTTCTGATTT+TGG | 0.093716 | 7.3:+30767814 | MS.gene27543:CDS |
| GCACCACCTGGTGAGCAATT+TGG | 0.177316 | 7.3:-30768961 | None:intergenic |
| TTTCGTGCTGATTATATTCT+TGG | 0.178780 | 7.3:+30766595 | MS.gene27543:CDS |
| TAGCTTCGGGGTTGTTCTTT+TGG | 0.221261 | 7.3:+30768540 | MS.gene27543:CDS |
| CACCACCTGGTGAGCAATTT+GGG | 0.230765 | 7.3:-30768960 | None:intergenic |
| ATCGCTTCCCGTTGCGGTTA+AGG | 0.240679 | 7.3:+30766681 | MS.gene27543:CDS |
| ATTCTTGTAGCCCATGTTAA+AGG | 0.256126 | 7.3:-30767590 | None:intergenic |
| TTACTGGCCTTTCAGCATTA+TGG | 0.261919 | 7.3:-30767652 | None:intergenic |
| CTCATTAGCGGCCTTGCTTT+GGG | 0.295579 | 7.3:-30768757 | None:intergenic |
| ACTCATTAGCGGCCTTGCTT+TGG | 0.303381 | 7.3:-30768758 | None:intergenic |
| ATACCAGTCATTACATATTC+TGG | 0.320288 | 7.3:-30767913 | None:intergenic |
| GTTTATGTTTCGAGGAAGTT+TGG | 0.321256 | 7.3:+30766918 | MS.gene27543:CDS |
| GGGTTTGGTACTGTTTATAA+AGG | 0.346693 | 7.3:+30766625 | MS.gene27543:CDS |
| CCTGGTGAGCAATTTGGGTT+TGG | 0.361214 | 7.3:-30768955 | None:intergenic |
| CCGAATCTTGTGAAGTTGAT+TGG | 0.363065 | 7.3:+30766856 | MS.gene27543:CDS |
| TCCTCTCGCCGGTGCCGGAA+AGG | 0.374839 | 7.3:-30766414 | None:intergenic |
| CCATGACTCGGGTGGATACA+TGG | 0.383988 | 7.3:-30767870 | None:intergenic |
| ATTCTTGGTGAAGGAGGGTT+TGG | 0.386135 | 7.3:+30766610 | MS.gene27543:CDS |
| AGGAACAAAGCTTGGTAGAT+TGG | 0.386135 | 7.3:+30768608 | MS.gene27543:CDS |
| GCTTTGTTCCTTACCCGGTC+TGG | 0.390818 | 7.3:-30768596 | None:intergenic |
| GCAGACGAAGTCTCATTATC+AGG | 0.393458 | 7.3:+30768826 | MS.gene27543:CDS |
| AGAAACCAAACCTCCCTTTC+CGG | 0.393499 | 7.3:+30766400 | MS.gene27543:CDS |
| GTGGTGCGCCTGCAGCATTA+CGG | 0.399495 | 7.3:+30768977 | MS.gene27543:CDS |
| TTGAAGTCACGATAGATTAC+TGG | 0.403142 | 7.3:-30767668 | None:intergenic |
| ATACATCACTCCTAGCTGTT+AGG | 0.410862 | 7.3:-30768516 | None:intergenic |
| TTGAATAAAGAAGGTCTTCA+AGG | 0.412245 | 7.3:+30766706 | MS.gene27543:CDS |
| ACAAATAATCGATCCAAGAT+TGG | 0.414256 | 7.3:+30768666 | MS.gene27543:CDS |
| ACCAACACTAGAACTTTGTA+AGG | 0.416456 | 7.3:-30768803 | None:intergenic |
| TTCAAAACCTTAACCGCAAC+GGG | 0.419283 | 7.3:-30766688 | None:intergenic |
| CCAATCAACTTCACAAGATT+CGG | 0.421504 | 7.3:-30766856 | None:intergenic |
| CCTCTCGCCGGTGCCGGAAA+GGG | 0.422726 | 7.3:-30766413 | None:intergenic |
| AGGAGTGATGTATATAGCTT+CGG | 0.424056 | 7.3:+30768526 | MS.gene27543:CDS |
| GGAGTGATGTATATAGCTTC+GGG | 0.424945 | 7.3:+30768527 | MS.gene27543:CDS |
| CGGTGCCGGAAAGGGAGGTT+TGG | 0.426382 | 7.3:-30766405 | None:intergenic |
| GGAACAAAGCTTGGTAGATT+GGG | 0.433031 | 7.3:+30768609 | MS.gene27543:CDS |
| CAAGACGTCTAATATATTGT+TGG | 0.437244 | 7.3:+30767688 | MS.gene27543:CDS |
| TACCAGTCATTACATATTCT+GGG | 0.437954 | 7.3:-30767912 | None:intergenic |
| TGGTGCGCCTGCAGCATTAC+GGG | 0.438333 | 7.3:+30768978 | MS.gene27543:CDS |
| ATCTTGGATCGATTATTTGT+AGG | 0.446767 | 7.3:-30768663 | None:intergenic |
| TTTCGCTTATCATTGAGCTT+TGG | 0.461031 | 7.3:-30768637 | None:intergenic |
| TCATTATCAGGATCAAATAG+TGG | 0.470729 | 7.3:+30768838 | MS.gene27543:CDS |
| CCAAACCCAAATTGCTCACC+AGG | 0.471531 | 7.3:+30768955 | MS.gene27543:CDS |
| GTTTATGAGTTTATGTTTCG+AGG | 0.472121 | 7.3:+30766910 | MS.gene27543:CDS |
| TGACAAAACCAGACCGGGTA+AGG | 0.472841 | 7.3:+30768588 | MS.gene27543:CDS |
| ATGGAGAAAAGCAAGTCCTT+TGG | 0.475652 | 7.3:-30767633 | None:intergenic |
| GCTTAGATCTGATGCAGAAT+CGG | 0.478386 | 7.3:-30766464 | None:intergenic |
| ACTTAAATCGCTTCCCGTTG+CGG | 0.480964 | 7.3:+30766675 | MS.gene27543:CDS |
| CCATGTATCCACCCGAGTCA+TGG | 0.482809 | 7.3:+30767870 | MS.gene27543:CDS |
| GGAGGTTTGGTTTCTAGCTC+CGG | 0.486867 | 7.3:-30766392 | None:intergenic |
| TTGGTCCAGGTGCAACTTGT+CGG | 0.488313 | 7.3:+30768929 | MS.gene27543:CDS |
| CATCTGACCCGTAATGCTGC+AGG | 0.497923 | 7.3:-30768985 | None:intergenic |
| CAAACCTCCCTTTCCGGCAC+CGG | 0.505234 | 7.3:+30766406 | MS.gene27543:CDS |
| TTGAAAACTTGTGACGCATT+CGG | 0.507062 | 7.3:-30768900 | None:intergenic |
| AGCACAGAAAGCATGTAGTC+TGG | 0.507315 | 7.3:+30768711 | MS.gene27543:CDS |
| CAACCCAAAATCAGAAAGCT+TGG | 0.513212 | 7.3:-30767818 | None:intergenic |
| CCCTTACAAAGTTCTAGTGT+TGG | 0.524224 | 7.3:+30768802 | MS.gene27543:CDS |
| AATGCTGCAGGCGCACCACC+TGG | 0.525262 | 7.3:-30768973 | None:intergenic |
| ATTGATGAGAATGTTAGAGT+TGG | 0.526160 | 7.3:+30766652 | MS.gene27543:CDS |
| AGGCAACTGTTCCTTTAACA+TGG | 0.527785 | 7.3:+30767579 | MS.gene27543:CDS |
| ACCAAGCTTTGTTCCTTACC+CGG | 0.530364 | 7.3:-30768601 | None:intergenic |
| AACCGTATGTACCCATGACT+CGG | 0.531156 | 7.3:-30767882 | None:intergenic |
| ACCGGGTAAGGAACAAAGCT+TGG | 0.534067 | 7.3:+30768600 | MS.gene27543:CDS |
| GCTGATTATATTCTTGGTGA+AGG | 0.534167 | 7.3:+30766601 | MS.gene27543:CDS |
| CATGTATCCACCCGAGTCAT+GGG | 0.536773 | 7.3:+30767871 | MS.gene27543:CDS |
| GGCAACTGTTCCTTTAACAT+GGG | 0.542068 | 7.3:+30767580 | MS.gene27543:CDS |
| CTCGCCGGTGCCGGAAAGGG+AGG | 0.545588 | 7.3:-30766410 | None:intergenic |
| ATTATATTCTTGGTGAAGGA+GGG | 0.553550 | 7.3:+30766605 | MS.gene27543:CDS |
| TTGGCTAAAGCAGGGCCTCA+AGG | 0.555724 | 7.3:+30767838 | MS.gene27543:CDS |
| GTCCGTTGACAAAACCAGAC+CGG | 0.561175 | 7.3:+30768582 | MS.gene27543:CDS |
| ATTCAAAACCTTAACCGCAA+CGG | 0.563141 | 7.3:-30766689 | None:intergenic |
| TGGTTTCTAGCTCCGGTAGG+TGG | 0.565266 | 7.3:-30766385 | None:intergenic |
| ATTGCACTTGGTGCTGCCAA+AGG | 0.566421 | 7.3:+30767617 | MS.gene27543:CDS |
| GTTTGGTTTCTAGCTCCGGT+AGG | 0.567335 | 7.3:-30766388 | None:intergenic |
| CCCTTTCCGGCACCGGCGAG+AGG | 0.569578 | 7.3:+30766413 | MS.gene27543:CDS |
| GATTATATTCTTGGTGAAGG+AGG | 0.571545 | 7.3:+30766604 | MS.gene27543:CDS |
| GGAGACCGACAAGTTGCACC+TGG | 0.572499 | 7.3:-30768934 | None:intergenic |
| ACAGTTCAGCATCCACCTAC+CGG | 0.574546 | 7.3:+30766373 | None:intergenic |
| ACCCGAGTCATGGGTACATA+CGG | 0.578252 | 7.3:+30767880 | MS.gene27543:CDS |
| TCGACTACATCACTCATTAG+CGG | 0.585989 | 7.3:-30768769 | None:intergenic |
| TCCGTTGACAAAACCAGACC+GGG | 0.594282 | 7.3:+30768583 | MS.gene27543:CDS |
| CATTATCAGGATCAAATAGT+GGG | 0.603050 | 7.3:+30768839 | MS.gene27543:CDS |
| CATGACTCGGGTGGATACAT+GGG | 0.603134 | 7.3:-30767869 | None:intergenic |
| ACCGTATGTACCCATGACTC+GGG | 0.607579 | 7.3:-30767881 | None:intergenic |
| GGTCAGGTCACCTAACAGCT+AGG | 0.608986 | 7.3:+30768506 | MS.gene27543:intron |
| GCCCCAGAATATGTAATGAC+TGG | 0.615898 | 7.3:+30767910 | MS.gene27543:CDS |
| GGATCAAATAGTGGGAGTAG+TGG | 0.620026 | 7.3:+30768847 | MS.gene27543:CDS |
| GGAAAATCAATATTCAGTGA+GGG | 0.621948 | 7.3:+30768687 | MS.gene27543:CDS |
| TGAGTCAAAATCCCAAAGCA+AGG | 0.624324 | 7.3:+30768746 | MS.gene27543:CDS |
| ACATGGGTTTCATCGCCTTG+AGG | 0.628614 | 7.3:-30767853 | None:intergenic |
| TGGAAAATCAATATTCAGTG+AGG | 0.630072 | 7.3:+30768686 | MS.gene27543:CDS |
| GTCTTCAAGGACATAGAGAG+TGG | 0.644772 | 7.3:+30766719 | MS.gene27543:CDS |
| ACCAGTCATTACATATTCTG+GGG | 0.650556 | 7.3:-30767911 | None:intergenic |
| CCAACACTAGAACTTTGTAA+GGG | 0.656270 | 7.3:-30768802 | None:intergenic |
| ACAAGAATGATGATTGCACT+TGG | 0.665680 | 7.3:+30767605 | MS.gene27543:CDS |
| GTATGTACCCATGACTCGGG+TGG | 0.668429 | 7.3:-30767878 | None:intergenic |
| GTTGATTGGTTATTGCTGTG+AGG | 0.677603 | 7.3:+30766870 | MS.gene27543:CDS |
| AACCCAAATTGCTCACCAGG+TGG | 0.679000 | 7.3:+30768958 | MS.gene27543:CDS |
| AGACTTGTTCAACGCCGCGG+TGG | 0.688124 | 7.3:+30766488 | MS.gene27543:CDS |
| GAGTGATGTATATAGCTTCG+GGG | 0.701633 | 7.3:+30768528 | MS.gene27543:CDS |
| GCGAGACTTGTTCAACGCCG+CGG | 0.714086 | 7.3:+30766485 | MS.gene27543:CDS |
| TTGTTCGCGTTGTTCCACCG+CGG | 0.758241 | 7.3:-30766502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAATCAATCTTATTA+TGG | - | chr7.3:30768117-30768136 | None:intergenic | 10.0% |
| !! | AAGAAATATAAAAAAATACT+TGG | - | chr7.3:30767756-30767775 | None:intergenic | 10.0% |
| !! | TCAAATTTATTAATATGCAT+TGG | - | chr7.3:30768050-30768069 | None:intergenic | 15.0% |
| !! | TGATTTGAAAATTAAATTTG+AGG | - | chr7.3:30768259-30768278 | None:intergenic | 15.0% |
| !!! | TTTTAGCATGATAAATTTTA+AGG | + | chr7.3:30767284-30767303 | MS.gene27543:intron | 15.0% |
| !! | AAAAAAAATGTCTGAAAGTA+TGG | + | chr7.3:30767976-30767995 | MS.gene27543:intron | 20.0% |
| !! | AAAACAAATTGCAAGATTAA+AGG | - | chr7.3:30768195-30768214 | None:intergenic | 20.0% |
| !!! | AAAAAAATGTCTGAAAGTAT+GGG | + | chr7.3:30767977-30767996 | MS.gene27543:intron | 20.0% |
| !!! | AAATTTGGCATATTTGAAAT+TGG | + | chr7.3:30768485-30768504 | MS.gene27543:intron | 20.0% |
| !!! | ATGATTTTTGAGAATTTGTT+AGG | + | chr7.3:30766988-30767007 | MS.gene27543:intron | 20.0% |
| !!! | TTGTTGAATTTTTGTTTGTT+TGG | + | chr7.3:30766795-30766814 | MS.gene27543:intron | 20.0% |
| ! | AAAGAAAATCAAGCATACTT+CGG | - | chr7.3:30766957-30766976 | None:intergenic | 25.0% |
| ! | ACAATACATTTCAATTGGAT+TGG | - | chr7.3:30767242-30767261 | None:intergenic | 25.0% |
| ! | CAATTGAAATGTATTGTAAC+TGG | + | chr7.3:30767245-30767264 | MS.gene27543:intron | 25.0% |
| ! | CAGTTACAATACATTTCAAT+TGG | - | chr7.3:30767247-30767266 | None:intergenic | 25.0% |
| ! | TTCTGGTATATTGAAGTTTA+GGG | + | chr7.3:30767722-30767741 | MS.gene27543:intron | 25.0% |
| ! | TTGTTAGGAATTGAATTGAA+TGG | + | chr7.3:30767003-30767022 | MS.gene27543:intron | 25.0% |
| ! | TTTAGCACAAAACATATACT+AGG | - | chr7.3:30768303-30768322 | None:intergenic | 25.0% |
| !! | AAATGTTTCTATCTCTTTAC+AGG | + | chr7.3:30768145-30768164 | MS.gene27543:intron | 25.0% |
| !! | GAGATTTTATTCATAGCAAA+AGG | - | chr7.3:30768874-30768893 | None:intergenic | 25.0% |
| !! | TTTCTGGTATATTGAAGTTT+AGG | + | chr7.3:30767721-30767740 | MS.gene27543:intron | 25.0% |
| !!! | GAATATTGATTTTCCAATCT+TGG | - | chr7.3:30768682-30768701 | None:intergenic | 25.0% |
| !!! | GTTAAGGTTTTGAATAAAGA+AGG | + | chr7.3:30766697-30766716 | MS.gene27543:CDS | 25.0% |
| !!! | TGCATATGTTTTAGTATGAA+TGG | + | chr7.3:30768452-30768471 | MS.gene27543:intron | 25.0% |
| AAAGGACTGGAAACAAAAAA+TGG | - | chr7.3:30768177-30768196 | None:intergenic | 30.0% | |
| AAATTGCAAGATTAAAGGAC+TGG | - | chr7.3:30768190-30768209 | None:intergenic | 30.0% | |
| AAGGACTGGAAACAAAAAAT+GGG | - | chr7.3:30768176-30768195 | None:intergenic | 30.0% | |
| AATGAATAAGACCAACTTCA+TGG | - | chr7.3:30768005-30768024 | None:intergenic | 30.0% | |
| AATGGATGCACATCTAAATT+TGG | + | chr7.3:30768470-30768489 | MS.gene27543:intron | 30.0% | |
| ACAAATAATCGATCCAAGAT+TGG | + | chr7.3:30768666-30768685 | MS.gene27543:CDS | 30.0% | |
| ATACCAGTCATTACATATTC+TGG | - | chr7.3:30767916-30767935 | None:intergenic | 30.0% | |
| ATCTTGGATCGATTATTTGT+AGG | - | chr7.3:30768666-30768685 | None:intergenic | 30.0% | |
| ATTATATTCTTGGTGAAGGA+GGG | + | chr7.3:30766605-30766624 | MS.gene27543:CDS | 30.0% | |
| ATTGATGAGAATGTTAGAGT+TGG | + | chr7.3:30766652-30766671 | MS.gene27543:CDS | 30.0% | |
| ATTTCCAAATTGAGCATGTT+TGG | - | chr7.3:30767951-30767970 | None:intergenic | 30.0% | |
| CAAGACGTCTAATATATTGT+TGG | + | chr7.3:30767688-30767707 | MS.gene27543:CDS | 30.0% | |
| CAATTTATAGCATGTTTGAC+CGG | - | chr7.3:30767380-30767399 | None:intergenic | 30.0% | |
| CATTATCAGGATCAAATAGT+GGG | + | chr7.3:30768839-30768858 | MS.gene27543:CDS | 30.0% | |
| GGAAAATCAATATTCAGTGA+GGG | + | chr7.3:30768687-30768706 | MS.gene27543:CDS | 30.0% | |
| GTCGGATAACATAGTTATTA+TGG | + | chr7.3:30768404-30768423 | MS.gene27543:intron | 30.0% | |
| GTTTATGAGTTTATGTTTCG+AGG | + | chr7.3:30766910-30766929 | MS.gene27543:CDS | 30.0% | |
| TACCAGTCATTACATATTCT+GGG | - | chr7.3:30767915-30767934 | None:intergenic | 30.0% | |
| TCATTATCAGGATCAAATAG+TGG | + | chr7.3:30768838-30768857 | MS.gene27543:CDS | 30.0% | |
| TGGAAAATCAATATTCAGTG+AGG | + | chr7.3:30768686-30768705 | MS.gene27543:CDS | 30.0% | |
| TTGAATAAAGAAGGTCTTCA+AGG | + | chr7.3:30766706-30766725 | MS.gene27543:CDS | 30.0% | |
| ! | GGAATTGAATTGAATGGATT+TGG | + | chr7.3:30767009-30767028 | MS.gene27543:intron | 30.0% |
| !! | AAGTTGGTCTTATTCATTGT+GGG | + | chr7.3:30768007-30768026 | MS.gene27543:intron | 30.0% |
| !! | TTTCGTGCTGATTATATTCT+TGG | + | chr7.3:30766595-30766614 | MS.gene27543:CDS | 30.0% |
| !!! | TTTTGTTTGTTTGGTGTAGA+CGG | + | chr7.3:30766804-30766823 | MS.gene27543:intron | 30.0% |
| ACAAGAATGATGATTGCACT+TGG | + | chr7.3:30767605-30767624 | MS.gene27543:CDS | 35.0% | |
| ACATAGTTTACAGTTCAAGC+TGG | + | chr7.3:30768350-30768369 | MS.gene27543:intron | 35.0% | |
| ACATATACTAGGAAAGACCA+TGG | - | chr7.3:30768292-30768311 | None:intergenic | 35.0% | |
| ACCAACACTAGAACTTTGTA+AGG | - | chr7.3:30768806-30768825 | None:intergenic | 35.0% | |
| ACCAGTCATTACATATTCTG+GGG | - | chr7.3:30767914-30767933 | None:intergenic | 35.0% | |
| AGGAGTGATGTATATAGCTT+CGG | + | chr7.3:30768526-30768545 | MS.gene27543:CDS | 35.0% | |
| ATGTTATCCGACATGCTTAA+TGG | - | chr7.3:30768396-30768415 | None:intergenic | 35.0% | |
| ATTCAAAACCTTAACCGCAA+CGG | - | chr7.3:30766692-30766711 | None:intergenic | 35.0% | |
| ATTCTTGTAGCCCATGTTAA+AGG | - | chr7.3:30767593-30767612 | None:intergenic | 35.0% | |
| CAAATCAATTTCCTGTTCCA+TGG | + | chr7.3:30768272-30768291 | MS.gene27543:intron | 35.0% | |
| CATAGTTATTATGGCTCTCA+TGG | + | chr7.3:30768413-30768432 | MS.gene27543:intron | 35.0% | |
| CATTGATATGAACTTTCCTG+AGG | + | chr7.3:30767549-30767568 | MS.gene27543:intron | 35.0% | |
| CCAACACTAGAACTTTGTAA+GGG | - | chr7.3:30768805-30768824 | None:intergenic | 35.0% | |
| CCAATCAACTTCACAAGATT+CGG | - | chr7.3:30766859-30766878 | None:intergenic | 35.0% | |
| GATTATATTCTTGGTGAAGG+AGG | + | chr7.3:30766604-30766623 | MS.gene27543:CDS | 35.0% | |
| GCTGATTATATTCTTGGTGA+AGG | + | chr7.3:30766601-30766620 | MS.gene27543:CDS | 35.0% | |
| GTCAGTTAGTCACGTAATAT+AGG | - | chr7.3:30768084-30768103 | None:intergenic | 35.0% | |
| GTTAGTCACGTAATATAGGA+AGG | - | chr7.3:30768080-30768099 | None:intergenic | 35.0% | |
| GTTTATGTTTCGAGGAAGTT+TGG | + | chr7.3:30766918-30766937 | MS.gene27543:CDS | 35.0% | |
| TAGCAAGAATTTCTCCTAAG+TGG | + | chr7.3:30767328-30767347 | MS.gene27543:intron | 35.0% | |
| TATATTAGCACTGCAGTGTA+GGG | + | chr7.3:30767121-30767140 | MS.gene27543:intron | 35.0% | |
| TGTTATCCGACATGCTTAAT+GGG | - | chr7.3:30768395-30768414 | None:intergenic | 35.0% | |
| TGTTCCAAACATGCTCAATT+TGG | + | chr7.3:30767944-30767963 | MS.gene27543:intron | 35.0% | |
| TTGAAAACTTGTGACGCATT+CGG | - | chr7.3:30768903-30768922 | None:intergenic | 35.0% | |
| TTGAAGTCACGATAGATTAC+TGG | - | chr7.3:30767671-30767690 | None:intergenic | 35.0% | |
| TTTCGCTTATCATTGAGCTT+TGG | - | chr7.3:30768640-30768659 | None:intergenic | 35.0% | |
| ! | AATTTCTCCTAAGTGGCTTT+TGG | + | chr7.3:30767335-30767354 | MS.gene27543:intron | 35.0% |
| ! | AGACGGAAGTGAATTTTCTT+GGG | + | chr7.3:30766821-30766840 | MS.gene27543:intron | 35.0% |
| ! | CACAAGTTTTCAAACAACGT+TGG | + | chr7.3:30768910-30768929 | MS.gene27543:CDS | 35.0% |
| ! | CTTTTCTCCATAATGCTGAA+AGG | + | chr7.3:30767645-30767664 | MS.gene27543:CDS | 35.0% |
| ! | GGGTTTGGTACTGTTTATAA+AGG | + | chr7.3:30766625-30766644 | MS.gene27543:CDS | 35.0% |
| ! | TAGACGGAAGTGAATTTTCT+TGG | + | chr7.3:30766820-30766839 | MS.gene27543:intron | 35.0% |
| ! | TGAATTTTCTTGGGCAGTTA+AGG | + | chr7.3:30766830-30766849 | MS.gene27543:CDS | 35.0% |
| ! | TGGCATATTTGAAATTGGTC+AGG | + | chr7.3:30768490-30768509 | MS.gene27543:intron | 35.0% |
| !! | GAAGTTGGTCTTATTCATTG+TGG | + | chr7.3:30768006-30768025 | MS.gene27543:intron | 35.0% |
| !!! | GTTCTTTTGGAGCTTTTAAC+AGG | + | chr7.3:30768553-30768572 | MS.gene27543:CDS | 35.0% |
| !!! | TACTTACTCTCTGTTGCTTT+TGG | + | chr7.3:30767777-30767796 | MS.gene27543:intron | 35.0% |
| !!! | TTTTGGAGCTTTTAACAGGA+AGG | + | chr7.3:30768557-30768576 | MS.gene27543:CDS | 35.0% |
| AAGTATGGGTACCATGAAGT+TGG | + | chr7.3:30767991-30768010 | MS.gene27543:intron | 40.0% | |
| AGGAACAAAGCTTGGTAGAT+TGG | + | chr7.3:30768608-30768627 | MS.gene27543:CDS | 40.0% | |
| AGGCAACTGTTCCTTTAACA+TGG | + | chr7.3:30767579-30767598 | MS.gene27543:CDS | 40.0% | |
| ATACATCACTCCTAGCTGTT+AGG | - | chr7.3:30768519-30768538 | None:intergenic | 40.0% | |
| ATATTAGCACTGCAGTGTAG+GGG | + | chr7.3:30767122-30767141 | MS.gene27543:intron | 40.0% | |
| ATGGAGAAAAGCAAGTCCTT+TGG | - | chr7.3:30767636-30767655 | None:intergenic | 40.0% | |
| CAACCCAAAATCAGAAAGCT+TGG | - | chr7.3:30767821-30767840 | None:intergenic | 40.0% | |
| CATGTACCCATTAAGCATGT+CGG | + | chr7.3:30768386-30768405 | MS.gene27543:intron | 40.0% | |
| CTATATTAGCACTGCAGTGT+AGG | + | chr7.3:30767120-30767139 | MS.gene27543:intron | 40.0% | |
| GAGTGATGTATATAGCTTCG+GGG | + | chr7.3:30768528-30768547 | MS.gene27543:CDS | 40.0% | |
| GCTTAGATCTGATGCAGAAT+CGG | - | chr7.3:30766467-30766486 | None:intergenic | 40.0% | |
| GGAACAAAGCTTGGTAGATT+GGG | + | chr7.3:30768609-30768628 | MS.gene27543:CDS | 40.0% | |
| GGAGTGATGTATATAGCTTC+GGG | + | chr7.3:30768527-30768546 | MS.gene27543:CDS | 40.0% | |
| GGCAACTGTTCCTTTAACAT+GGG | + | chr7.3:30767580-30767599 | MS.gene27543:CDS | 40.0% | |
| TCGACTACATCACTCATTAG+CGG | - | chr7.3:30768772-30768791 | None:intergenic | 40.0% | |
| TGAGTCAAAATCCCAAAGCA+AGG | + | chr7.3:30768746-30768765 | MS.gene27543:CDS | 40.0% | |
| TGTTGGACTCTGTAAGTTTC+TGG | + | chr7.3:30767705-30767724 | MS.gene27543:intron | 40.0% | |
| TTCAAAACCTTAACCGCAAC+GGG | - | chr7.3:30766691-30766710 | None:intergenic | 40.0% | |
| TTTATAGCATGTTTGACCGG+CGG | - | chr7.3:30767377-30767396 | None:intergenic | 40.0% | |
| ! | ACAGCCAAGCTTTCTGATTT+TGG | + | chr7.3:30767814-30767833 | MS.gene27543:CDS | 40.0% |
| ! | CAGCCAAGCTTTCTGATTTT+GGG | + | chr7.3:30767815-30767834 | MS.gene27543:CDS | 40.0% |
| ! | CCCTTACAAAGTTCTAGTGT+TGG | + | chr7.3:30768802-30768821 | MS.gene27543:CDS | 40.0% |
| ! | CCGAATCTTGTGAAGTTGAT+TGG | + | chr7.3:30766856-30766875 | MS.gene27543:CDS | 40.0% |
| ! | GTTGATTGGTTATTGCTGTG+AGG | + | chr7.3:30766870-30766889 | MS.gene27543:CDS | 40.0% |
| ! | TTTTCAAACAACGTTGGTCC+AGG | + | chr7.3:30768916-30768935 | MS.gene27543:CDS | 40.0% |
| !! | CAAGCTTTCTGATTTTGGGT+TGG | + | chr7.3:30767819-30767838 | MS.gene27543:CDS | 40.0% |
| !! | GATTGACAGCACTGATTCTT+AGG | + | chr7.3:30767178-30767197 | MS.gene27543:intron | 40.0% |
| !! | TTACTGGCCTTTCAGCATTA+TGG | - | chr7.3:30767655-30767674 | None:intergenic | 40.0% |
| !!! | ATTTTGGGTTGGCTAAAGCA+GGG | + | chr7.3:30767830-30767849 | MS.gene27543:CDS | 40.0% |
| AACCGTATGTACCCATGACT+CGG | - | chr7.3:30767885-30767904 | None:intergenic | 45.0% | |
| AACTTTCCTGAGGTTTCCAG+AGG | + | chr7.3:30767559-30767578 | MS.gene27543:intron | 45.0% | |
| ACTAGGAAAGACCATGGAAC+AGG | - | chr7.3:30768286-30768305 | None:intergenic | 45.0% | |
| ACTTAAATCGCTTCCCGTTG+CGG | + | chr7.3:30766675-30766694 | MS.gene27543:CDS | 45.0% | |
| AGAAACCAAACCTCCCTTTC+CGG | + | chr7.3:30766400-30766419 | MS.gene27543:CDS | 45.0% | |
| AGTGCAACCAAAAGCCACTT+AGG | - | chr7.3:30767345-30767364 | None:intergenic | 45.0% | |
| ATTCTTGGTGAAGGAGGGTT+TGG | + | chr7.3:30766610-30766629 | MS.gene27543:CDS | 45.0% | |
| CGAGTAGTGGTAAAATGCAG+TGG | + | chr7.3:30767065-30767084 | MS.gene27543:intron | 45.0% | |
| GCAGACGAAGTCTCATTATC+AGG | + | chr7.3:30768826-30768845 | MS.gene27543:CDS | 45.0% | |
| GCCCCAGAATATGTAATGAC+TGG | + | chr7.3:30767910-30767929 | MS.gene27543:CDS | 45.0% | |
| GTCTTCAAGGACATAGAGAG+TGG | + | chr7.3:30766719-30766738 | MS.gene27543:CDS | 45.0% | |
| GTTAAAGGAACAGTTGCCTC+TGG | - | chr7.3:30767578-30767597 | None:intergenic | 45.0% | |
| ! | AGCACAGAAAGCATGTAGTC+TGG | + | chr7.3:30768711-30768730 | MS.gene27543:CDS | 45.0% |
| ! | CATTGTGGGTTGTGATCAGA+TGG | + | chr7.3:30768021-30768040 | MS.gene27543:intron | 45.0% |
| ! | GGATCAAATAGTGGGAGTAG+TGG | + | chr7.3:30768847-30768866 | MS.gene27543:CDS | 45.0% |
| ! | TAGCTTCGGGGTTGTTCTTT+TGG | + | chr7.3:30768540-30768559 | MS.gene27543:CDS | 45.0% |
| !! | ACCAAGCTTTGTTCCTTACC+CGG | - | chr7.3:30768604-30768623 | None:intergenic | 45.0% |
| !!! | GATTTTGGGTTGGCTAAAGC+AGG | + | chr7.3:30767829-30767848 | MS.gene27543:CDS | 45.0% |
| !!! | TCTGTTGCTTTTGGCTCTAC+AGG | + | chr7.3:30767786-30767805 | MS.gene27543:intron | 45.0% |
| AACCCAAATTGCTCACCAGG+TGG | + | chr7.3:30768958-30768977 | MS.gene27543:CDS | 50.0% | |
| ACATGGGTTTCATCGCCTTG+AGG | - | chr7.3:30767856-30767875 | None:intergenic | 50.0% | |
| ACCCGAGTCATGGGTACATA+CGG | + | chr7.3:30767880-30767899 | MS.gene27543:CDS | 50.0% | |
| ACCGGGTAAGGAACAAAGCT+TGG | + | chr7.3:30768600-30768619 | MS.gene27543:CDS | 50.0% | |
| ACCGTATGTACCCATGACTC+GGG | - | chr7.3:30767884-30767903 | None:intergenic | 50.0% | |
| ACTCATTAGCGGCCTTGCTT+TGG | - | chr7.3:30768761-30768780 | None:intergenic | 50.0% | |
| CACCACCTGGTGAGCAATTT+GGG | - | chr7.3:30768963-30768982 | None:intergenic | 50.0% | |
| CATGTATCCACCCGAGTCAT+GGG | + | chr7.3:30767871-30767890 | MS.gene27543:CDS | 50.0% | |
| CCAAACCCAAATTGCTCACC+AGG | + | chr7.3:30768955-30768974 | MS.gene27543:CDS | 50.0% | |
| CTCATTAGCGGCCTTGCTTT+GGG | - | chr7.3:30768760-30768779 | None:intergenic | 50.0% | |
| GTAGCTGTGTTGTCGAGTAG+TGG | + | chr7.3:30767052-30767071 | MS.gene27543:intron | 50.0% | |
| GTCCGTTGACAAAACCAGAC+CGG | + | chr7.3:30768582-30768601 | MS.gene27543:CDS | 50.0% | |
| TCCGTTGACAAAACCAGACC+GGG | + | chr7.3:30768583-30768602 | MS.gene27543:CDS | 50.0% | |
| TGACAAAACCAGACCGGGTA+AGG | + | chr7.3:30768588-30768607 | MS.gene27543:CDS | 50.0% | |
| TTGGTCCAGGTGCAACTTGT+CGG | + | chr7.3:30768929-30768948 | MS.gene27543:CDS | 50.0% | |
| ! | CATGACTCGGGTGGATACAT+GGG | - | chr7.3:30767872-30767891 | None:intergenic | 50.0% |
| ! | CCTGGTGAGCAATTTGGGTT+TGG | - | chr7.3:30768958-30768977 | None:intergenic | 50.0% |
| ! | TGTGGGTTGTGATCAGATGG+AGG | + | chr7.3:30768024-30768043 | MS.gene27543:intron | 50.0% |
| !! | ATTGCACTTGGTGCTGCCAA+AGG | + | chr7.3:30767617-30767636 | MS.gene27543:CDS | 50.0% |
| !! | GGAGGTTTGGTTTCTAGCTC+CGG | - | chr7.3:30766395-30766414 | None:intergenic | 50.0% |
| !! | GTTTGGTTTCTAGCTCCGGT+AGG | - | chr7.3:30766391-30766410 | None:intergenic | 50.0% |
| !!! | ACCCGGTCTGGTTTTGTCAA+CGG | - | chr7.3:30768587-30768606 | None:intergenic | 50.0% |
| !!! | ACTGCTGTTTTTCCTCTCGC+CGG | - | chr7.3:30766428-30766447 | None:intergenic | 50.0% |
| ATCGCTTCCCGTTGCGGTTA+AGG | + | chr7.3:30766681-30766700 | MS.gene27543:CDS | 55.0% | |
| CATCTGACCCGTAATGCTGC+AGG | - | chr7.3:30768988-30769007 | None:intergenic | 55.0% | |
| CCATGTATCCACCCGAGTCA+TGG | + | chr7.3:30767870-30767889 | MS.gene27543:CDS | 55.0% | |
| GCACCACCTGGTGAGCAATT+TGG | - | chr7.3:30768964-30768983 | None:intergenic | 55.0% | |
| GGTCAGGTCACCTAACAGCT+AGG | + | chr7.3:30768506-30768525 | MS.gene27543:intron | 55.0% | |
| TTGCACTTGTTCTGTGCCGC+CGG | + | chr7.3:30767358-30767377 | MS.gene27543:intron | 55.0% | |
| TTGGCTAAAGCAGGGCCTCA+AGG | + | chr7.3:30767838-30767857 | MS.gene27543:CDS | 55.0% | |
| TTGTTCGCGTTGTTCCACCG+CGG | - | chr7.3:30766505-30766524 | None:intergenic | 55.0% | |
| ! | CAGTTGCCTCTGGAAACCTC+AGG | - | chr7.3:30767568-30767587 | None:intergenic | 55.0% |
| ! | CCATGACTCGGGTGGATACA+TGG | - | chr7.3:30767873-30767892 | None:intergenic | 55.0% |
| ! | GCTTTGTTCCTTACCCGGTC+TGG | - | chr7.3:30768599-30768618 | None:intergenic | 55.0% |
| ! | GTATGTACCCATGACTCGGG+TGG | - | chr7.3:30767881-30767900 | None:intergenic | 55.0% |
| !! | TGGTTTCTAGCTCCGGTAGG+TGG | - | chr7.3:30766388-30766407 | None:intergenic | 55.0% |
| CAAACCTCCCTTTCCGGCAC+CGG | + | chr7.3:30766406-30766425 | MS.gene27543:CDS | 60.0% | |
| GGAGACCGACAAGTTGCACC+TGG | - | chr7.3:30768937-30768956 | None:intergenic | 60.0% | |
| GTGGTGCGCCTGCAGCATTA+CGG | + | chr7.3:30768977-30768996 | MS.gene27543:CDS | 60.0% | |
| TGGTGCGCCTGCAGCATTAC+GGG | + | chr7.3:30768978-30768997 | MS.gene27543:CDS | 60.0% | |
| ! | AGACTTGTTCAACGCCGCGG+TGG | + | chr7.3:30766488-30766507 | MS.gene27543:CDS | 60.0% |
| ! | GCGAGACTTGTTCAACGCCG+CGG | + | chr7.3:30766485-30766504 | MS.gene27543:CDS | 60.0% |
| ! | GTTTTTCCTCTCGCCGGTGC+CGG | - | chr7.3:30766422-30766441 | None:intergenic | 60.0% |
| AATGCTGCAGGCGCACCACC+TGG | - | chr7.3:30768976-30768995 | None:intergenic | 65.0% | |
| ! | CGGTGCCGGAAAGGGAGGTT+TGG | - | chr7.3:30766408-30766427 | None:intergenic | 65.0% |
| ! | CCTCTCGCCGGTGCCGGAAA+GGG | - | chr7.3:30766416-30766435 | None:intergenic | 70.0% |
| ! | TCCTCTCGCCGGTGCCGGAA+AGG | - | chr7.3:30766417-30766436 | None:intergenic | 70.0% |
| ! | CTCGCCGGTGCCGGAAAGGG+AGG | - | chr7.3:30766413-30766432 | None:intergenic | 75.0% |
| !! | CCCTTTCCGGCACCGGCGAG+AGG | + | chr7.3:30766413-30766432 | MS.gene27543:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 30766377 | 30769008 | 30766377 | ID=MS.gene27543 |
| chr7.3 | mRNA | 30766377 | 30769008 | 30766377 | ID=MS.gene27543.t1;Parent=MS.gene27543 |
| chr7.3 | exon | 30766377 | 30766744 | 30766377 | ID=MS.gene27543.t1.exon1;Parent=MS.gene27543.t1 |
| chr7.3 | CDS | 30766377 | 30766744 | 30766377 | ID=cds.MS.gene27543.t1;Parent=MS.gene27543.t1 |
| chr7.3 | exon | 30766823 | 30766958 | 30766823 | ID=MS.gene27543.t1.exon2;Parent=MS.gene27543.t1 |
| chr7.3 | CDS | 30766823 | 30766958 | 30766823 | ID=cds.MS.gene27543.t1;Parent=MS.gene27543.t1 |
| chr7.3 | exon | 30767579 | 30767715 | 30767579 | ID=MS.gene27543.t1.exon3;Parent=MS.gene27543.t1 |
| chr7.3 | CDS | 30767579 | 30767715 | 30767579 | ID=cds.MS.gene27543.t1;Parent=MS.gene27543.t1 |
| chr7.3 | exon | 30767808 | 30767931 | 30767808 | ID=MS.gene27543.t1.exon4;Parent=MS.gene27543.t1 |
| chr7.3 | CDS | 30767808 | 30767931 | 30767808 | ID=cds.MS.gene27543.t1;Parent=MS.gene27543.t1 |
| chr7.3 | exon | 30768512 | 30769008 | 30768512 | ID=MS.gene27543.t1.exon5;Parent=MS.gene27543.t1 |
| chr7.3 | CDS | 30768512 | 30769008 | 30768512 | ID=cds.MS.gene27543.t1;Parent=MS.gene27543.t1 |
| Gene Sequence |
| Protein sequence |
