Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058535.t1 | XP_003623694.1 | 98.6 | 417 | 2 | 1 | 1 | 413 | 19 | 435 | 3.00E-233 | 817.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058535.t1 | Q8GXZ3 | 78.2 | 412 | 78 | 6 | 6 | 413 | 5 | 408 | 5.0e-176 | 618.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058535.t1 | G7KZ96 | 98.6 | 417 | 2 | 1 | 1 | 413 | 19 | 435 | 2.2e-233 | 817.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050667 | MS.gene058535 | 0.801013 | 1.10E-48 | -1.69E-46 |
| MS.gene058535 | MS.gene070324 | 0.809154 | 2.18E-50 | -1.69E-46 |
| MS.gene058535 | MS.gene27542 | 0.895691 | 7.54E-76 | -1.69E-46 |
| MS.gene058535 | MS.gene27543 | 0.960875 | 4.70E-119 | -1.69E-46 |
| MS.gene058535 | MS.gene29067 | 0.840062 | 1.09E-57 | -1.69E-46 |
| MS.gene058535 | MS.gene70704 | 0.819935 | 8.94E-53 | -1.69E-46 |
| MS.gene058535 | MS.gene92803 | 0.886485 | 3.28E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 99 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGCCAAGCTTTCTGATTT+TGG | 0.093716 | 7.3:-30685433 | MS.gene058535:CDS |
| GCACCACCTGGTGAGCAATT+TGG | 0.177316 | 7.3:+30684286 | None:intergenic |
| TTTCGTGCTGATTATATTCT+TGG | 0.178780 | 7.3:-30686652 | MS.gene058535:CDS |
| TAGCTTCGGGGTTGTTCTTT+TGG | 0.221261 | 7.3:-30684707 | MS.gene058535:CDS |
| CACCACCTGGTGAGCAATTT+GGG | 0.230765 | 7.3:+30684287 | None:intergenic |
| ATCGCTTCCCGTTGCGGTTA+AGG | 0.240679 | 7.3:-30686566 | MS.gene058535:CDS |
| ATTCTTGTAGCCCATGTTAA+AGG | 0.256126 | 7.3:+30685657 | None:intergenic |
| TTACTGGCCTTTCAGCATTA+TGG | 0.261919 | 7.3:+30685595 | None:intergenic |
| CTCATTAGCGGCCTTGCTTT+GGG | 0.295579 | 7.3:+30684490 | None:intergenic |
| ACTCATTAGCGGCCTTGCTT+TGG | 0.303381 | 7.3:+30684489 | None:intergenic |
| ATACCAGTCATTACATATTC+TGG | 0.320288 | 7.3:+30685334 | None:intergenic |
| GTTTATGTTTCGAGGAAGTT+TGG | 0.321256 | 7.3:-30686329 | MS.gene058535:CDS |
| GGGTTTGGTACTGTTTATAA+AGG | 0.346693 | 7.3:-30686622 | MS.gene058535:CDS |
| CCTGGTGAGCAATTTGGGTT+TGG | 0.361214 | 7.3:+30684292 | None:intergenic |
| CCGAATCTTGTGAAGTTGAT+TGG | 0.363065 | 7.3:-30686391 | MS.gene058535:CDS |
| TCCTCTCGCCGGTGCCGGAA+AGG | 0.374839 | 7.3:+30686833 | None:intergenic |
| CCATGACTCGGGTGGATACA+TGG | 0.383988 | 7.3:+30685377 | None:intergenic |
| AGGAACAAAGCTTGGTAGAT+TGG | 0.386135 | 7.3:-30684639 | MS.gene058535:CDS |
| ATTCTTGGTGAAGGAGGGTT+TGG | 0.386135 | 7.3:-30686637 | MS.gene058535:CDS |
| GCTTTGTTCCTTACCCGGTC+TGG | 0.390818 | 7.3:+30684651 | None:intergenic |
| GCAGACGAAGTCTCATTATC+AGG | 0.393458 | 7.3:-30684421 | MS.gene058535:CDS |
| AGAAACCAAACCTCCCTTTC+CGG | 0.393499 | 7.3:-30686847 | MS.gene058535:CDS |
| GTGGTGCGCCTGCAGCATTA+CGG | 0.399495 | 7.3:-30684270 | MS.gene058535:CDS |
| TTGAAGTCACGATAGATTAC+TGG | 0.403142 | 7.3:+30685579 | None:intergenic |
| TTGAATAAAGAAGGTCTTCA+AGG | 0.412245 | 7.3:-30686541 | MS.gene058535:CDS |
| ACAAATAATCGATCCAAGAT+TGG | 0.414256 | 7.3:-30684581 | MS.gene058535:CDS |
| ACCAACACTAGAACTTTGTA+AGG | 0.416456 | 7.3:+30684444 | None:intergenic |
| TTCAAAACCTTAACCGCAAC+GGG | 0.419283 | 7.3:+30686559 | None:intergenic |
| CCAATCAACTTCACAAGATT+CGG | 0.421504 | 7.3:+30686391 | None:intergenic |
| CCTCTCGCCGGTGCCGGAAA+GGG | 0.422726 | 7.3:+30686834 | None:intergenic |
| AGGAGTGATGTATATAGCTT+CGG | 0.424056 | 7.3:-30684721 | MS.gene058535:CDS |
| GGAGTGATGTATATAGCTTC+GGG | 0.424945 | 7.3:-30684720 | MS.gene058535:CDS |
| CGGTGCCGGAAAGGGAGGTT+TGG | 0.426382 | 7.3:+30686842 | None:intergenic |
| GGAACAAAGCTTGGTAGATT+GGG | 0.433031 | 7.3:-30684638 | MS.gene058535:CDS |
| CAAGACGTCTAATATATTGT+TGG | 0.437244 | 7.3:-30685559 | MS.gene058535:CDS |
| TACCAGTCATTACATATTCT+GGG | 0.437954 | 7.3:+30685335 | None:intergenic |
| TGGTGCGCCTGCAGCATTAC+GGG | 0.438333 | 7.3:-30684269 | None:intergenic |
| ATCTTGGATCGATTATTTGT+AGG | 0.446767 | 7.3:+30684584 | None:intergenic |
| TTTCGCTTATCATTGAGCTT+TGG | 0.461031 | 7.3:+30684610 | None:intergenic |
| TCATTATCAGGATCAAATAG+TGG | 0.470729 | 7.3:-30684409 | MS.gene058535:CDS |
| CCAAACCCAAATTGCTCACC+AGG | 0.471531 | 7.3:-30684292 | MS.gene058535:CDS |
| GTTTATGAGTTTATGTTTCG+AGG | 0.472121 | 7.3:-30686337 | MS.gene058535:CDS |
| TGACAAAACCAGACCGGGTA+AGG | 0.472841 | 7.3:-30684659 | MS.gene058535:CDS |
| ATGGAGAAAAGCAAGTCCTT+TGG | 0.475652 | 7.3:+30685614 | None:intergenic |
| GCTTAGATCTGATGCAGAAT+CGG | 0.478386 | 7.3:+30686783 | None:intergenic |
| ACTTAAATCGCTTCCCGTTG+CGG | 0.480964 | 7.3:-30686572 | MS.gene058535:CDS |
| CCATGTATCCACCCGAGTCA+TGG | 0.482809 | 7.3:-30685377 | MS.gene058535:CDS |
| GGAGGTTTGGTTTCTAGCTC+CGG | 0.486867 | 7.3:+30686855 | None:intergenic |
| TTGGTCCAGGTGCAACTTGT+CGG | 0.488313 | 7.3:-30684318 | MS.gene058535:CDS |
| CATCTGACCCGTAATGCTGC+AGG | 0.497923 | 7.3:+30684262 | None:intergenic |
| CAAACCTCCCTTTCCGGCAC+CGG | 0.505234 | 7.3:-30686841 | MS.gene058535:CDS |
| TTGAAAACTTGTGACGCATT+CGG | 0.507062 | 7.3:+30684347 | None:intergenic |
| AGCACAGAAAGCATGTAGTC+TGG | 0.507315 | 7.3:-30684536 | MS.gene058535:CDS |
| CAACCCAAAATCAGAAAGCT+TGG | 0.513212 | 7.3:+30685429 | None:intergenic |
| CCCTTACAAAGTTCTAGTGT+TGG | 0.524224 | 7.3:-30684445 | MS.gene058535:CDS |
| AATGCTGCAGGCGCACCACC+TGG | 0.525262 | 7.3:+30684274 | None:intergenic |
| ATTGATGAGAATGTTAGAGT+TGG | 0.526160 | 7.3:-30686595 | MS.gene058535:CDS |
| AGGCAACTGTTCCTTTAACA+TGG | 0.527785 | 7.3:-30685668 | MS.gene058535:CDS |
| ACCAAGCTTTGTTCCTTACC+CGG | 0.530364 | 7.3:+30684646 | None:intergenic |
| AACCGTATGTACCCATGACT+CGG | 0.531156 | 7.3:+30685365 | None:intergenic |
| ACCGGGTAAGGAACAAAGCT+TGG | 0.534067 | 7.3:-30684647 | MS.gene058535:CDS |
| GCTGATTATATTCTTGGTGA+AGG | 0.534167 | 7.3:-30686646 | MS.gene058535:CDS |
| CATGTATCCACCCGAGTCAT+GGG | 0.536773 | 7.3:-30685376 | MS.gene058535:CDS |
| GGCAACTGTTCCTTTAACAT+GGG | 0.542068 | 7.3:-30685667 | MS.gene058535:CDS |
| CTCGCCGGTGCCGGAAAGGG+AGG | 0.545588 | 7.3:+30686837 | None:intergenic |
| ATTATATTCTTGGTGAAGGA+GGG | 0.553550 | 7.3:-30686642 | MS.gene058535:CDS |
| TTGGCTAAAGCAGGGCCTCA+AGG | 0.555724 | 7.3:-30685409 | MS.gene058535:CDS |
| GTCCGTTGACAAAACCAGAC+CGG | 0.561175 | 7.3:-30684665 | MS.gene058535:CDS |
| ATTCAAAACCTTAACCGCAA+CGG | 0.563141 | 7.3:+30686558 | None:intergenic |
| TGGTTTCTAGCTCCGGTAGG+TGG | 0.565266 | 7.3:+30686862 | None:intergenic |
| ATTGCACTTGGTGCTGCCAA+AGG | 0.566421 | 7.3:-30685630 | MS.gene058535:CDS |
| GTTTGGTTTCTAGCTCCGGT+AGG | 0.567335 | 7.3:+30686859 | None:intergenic |
| CCCTTTCCGGCACCGGCGAG+AGG | 0.569578 | 7.3:-30686834 | MS.gene058535:CDS |
| GATTATATTCTTGGTGAAGG+AGG | 0.571545 | 7.3:-30686643 | MS.gene058535:CDS |
| GGAGACCGACAAGTTGCACC+TGG | 0.572499 | 7.3:+30684313 | None:intergenic |
| ACAGTTCAGCATCCACCTAC+CGG | 0.574546 | 7.3:-30686874 | None:intergenic |
| ACCCGAGTCATGGGTACATA+CGG | 0.578252 | 7.3:-30685367 | MS.gene058535:CDS |
| TCGACTACATCACTCATTAG+CGG | 0.585989 | 7.3:+30684478 | None:intergenic |
| TCCGTTGACAAAACCAGACC+GGG | 0.594282 | 7.3:-30684664 | MS.gene058535:CDS |
| CATTATCAGGATCAAATAGT+GGG | 0.603050 | 7.3:-30684408 | MS.gene058535:CDS |
| CATGACTCGGGTGGATACAT+GGG | 0.603134 | 7.3:+30685378 | None:intergenic |
| ACCGTATGTACCCATGACTC+GGG | 0.607579 | 7.3:+30685366 | None:intergenic |
| GCCCCAGAATATGTAATGAC+TGG | 0.615898 | 7.3:-30685337 | MS.gene058535:intron |
| GGATCAAATAGTGGGAGTAG+TGG | 0.620026 | 7.3:-30684400 | MS.gene058535:CDS |
| GGAAAATCAATATTCAGTGA+GGG | 0.621948 | 7.3:-30684560 | MS.gene058535:CDS |
| TGAGTCAAAATCCCAAAGCA+AGG | 0.624324 | 7.3:-30684501 | MS.gene058535:CDS |
| ACATGGGTTTCATCGCCTTG+AGG | 0.628614 | 7.3:+30685394 | None:intergenic |
| TGGAAAATCAATATTCAGTG+AGG | 0.630072 | 7.3:-30684561 | MS.gene058535:CDS |
| GTCTTCAAGGACATAGAGAG+TGG | 0.644772 | 7.3:-30686528 | MS.gene058535:CDS |
| ACCAGTCATTACATATTCTG+GGG | 0.650556 | 7.3:+30685336 | None:intergenic |
| CCAACACTAGAACTTTGTAA+GGG | 0.656270 | 7.3:+30684445 | None:intergenic |
| ACAAGAATGATGATTGCACT+TGG | 0.665680 | 7.3:-30685642 | MS.gene058535:CDS |
| GTATGTACCCATGACTCGGG+TGG | 0.668429 | 7.3:+30685369 | None:intergenic |
| GTTGATTGGTTATTGCTGTG+AGG | 0.677603 | 7.3:-30686377 | MS.gene058535:CDS |
| AACCCAAATTGCTCACCAGG+TGG | 0.679000 | 7.3:-30684289 | MS.gene058535:CDS |
| AGACTTGTTCAACGCCGCGG+TGG | 0.688124 | 7.3:-30686759 | MS.gene058535:CDS |
| GAGTGATGTATATAGCTTCG+GGG | 0.701633 | 7.3:-30684719 | MS.gene058535:CDS |
| GCGAGACTTGTTCAACGCCG+CGG | 0.714086 | 7.3:-30686762 | MS.gene058535:CDS |
| TTGTTCGCGTTGTTCCACCG+CGG | 0.758241 | 7.3:+30686745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAATCAATCTTATTA+TGG | + | chr7.3:30686010-30686029 | None:intergenic | 10.0% |
| !! | AAGAAATATAAAAAAATACT+TGG | + | chr7.3:30685649-30685668 | None:intergenic | 10.0% |
| !! | TCAAATTTATTAATATGCAT+TGG | + | chr7.3:30685943-30685962 | None:intergenic | 15.0% |
| !! | TGATTTGAAAATTAAATTTG+AGG | + | chr7.3:30686152-30686171 | None:intergenic | 15.0% |
| !!! | TTTTAGCATGATAAATTTTA+AGG | - | chr7.3:30685177-30685196 | MS.gene058535:intron | 15.0% |
| !! | AAAAAAAATGTCTGAAAGTA+TGG | - | chr7.3:30685869-30685888 | MS.gene058535:intron | 20.0% |
| !! | AAAACAAATTGCAAGATTAA+AGG | + | chr7.3:30686088-30686107 | None:intergenic | 20.0% |
| !!! | AAAAAAATGTCTGAAAGTAT+GGG | - | chr7.3:30685870-30685889 | MS.gene058535:intron | 20.0% |
| !!! | AAATTTGGCATATTTGAAAT+TGG | - | chr7.3:30686378-30686397 | MS.gene058535:CDS | 20.0% |
| !!! | ATGATTTTTGAGAATTTGTT+AGG | - | chr7.3:30684881-30684900 | MS.gene058535:intron | 20.0% |
| !!! | TTGTTGAATTTTTGTTTGTT+TGG | - | chr7.3:30684688-30684707 | MS.gene058535:CDS | 20.0% |
| ! | AAAGAAAATCAAGCATACTT+CGG | + | chr7.3:30684850-30684869 | None:intergenic | 25.0% |
| ! | ACAATACATTTCAATTGGAT+TGG | + | chr7.3:30685135-30685154 | None:intergenic | 25.0% |
| ! | CAATTGAAATGTATTGTAAC+TGG | - | chr7.3:30685138-30685157 | MS.gene058535:intron | 25.0% |
| ! | CAGTTACAATACATTTCAAT+TGG | + | chr7.3:30685140-30685159 | None:intergenic | 25.0% |
| ! | TTCTGGTATATTGAAGTTTA+GGG | - | chr7.3:30685615-30685634 | MS.gene058535:CDS | 25.0% |
| ! | TTGTTAGGAATTGAATTGAA+TGG | - | chr7.3:30684896-30684915 | MS.gene058535:intron | 25.0% |
| ! | TTTAGCACAAAACATATACT+AGG | + | chr7.3:30686196-30686215 | None:intergenic | 25.0% |
| !! | AAATGTTTCTATCTCTTTAC+AGG | - | chr7.3:30686038-30686057 | MS.gene058535:intron | 25.0% |
| !! | GAGATTTTATTCATAGCAAA+AGG | + | chr7.3:30686767-30686786 | None:intergenic | 25.0% |
| !! | TTTCTGGTATATTGAAGTTT+AGG | - | chr7.3:30685614-30685633 | MS.gene058535:CDS | 25.0% |
| !!! | GAATATTGATTTTCCAATCT+TGG | + | chr7.3:30686575-30686594 | None:intergenic | 25.0% |
| !!! | GTTAAGGTTTTGAATAAAGA+AGG | - | chr7.3:30684590-30684609 | MS.gene058535:CDS | 25.0% |
| !!! | TGCATATGTTTTAGTATGAA+TGG | - | chr7.3:30686345-30686364 | MS.gene058535:CDS | 25.0% |
| AAAGGACTGGAAACAAAAAA+TGG | + | chr7.3:30686070-30686089 | None:intergenic | 30.0% | |
| AAATTGCAAGATTAAAGGAC+TGG | + | chr7.3:30686083-30686102 | None:intergenic | 30.0% | |
| AAGGACTGGAAACAAAAAAT+GGG | + | chr7.3:30686069-30686088 | None:intergenic | 30.0% | |
| AATGAATAAGACCAACTTCA+TGG | + | chr7.3:30685898-30685917 | None:intergenic | 30.0% | |
| AATGGATGCACATCTAAATT+TGG | - | chr7.3:30686363-30686382 | MS.gene058535:CDS | 30.0% | |
| ACAAATAATCGATCCAAGAT+TGG | - | chr7.3:30686559-30686578 | MS.gene058535:CDS | 30.0% | |
| ATACCAGTCATTACATATTC+TGG | + | chr7.3:30685809-30685828 | None:intergenic | 30.0% | |
| ATCTTGGATCGATTATTTGT+AGG | + | chr7.3:30686559-30686578 | None:intergenic | 30.0% | |
| ATTATATTCTTGGTGAAGGA+GGG | - | chr7.3:30684498-30684517 | MS.gene058535:CDS | 30.0% | |
| ATTGATGAGAATGTTAGAGT+TGG | - | chr7.3:30684545-30684564 | MS.gene058535:CDS | 30.0% | |
| ATTTCCAAATTGAGCATGTT+TGG | + | chr7.3:30685844-30685863 | None:intergenic | 30.0% | |
| CAAGACGTCTAATATATTGT+TGG | - | chr7.3:30685581-30685600 | MS.gene058535:CDS | 30.0% | |
| CAATTTATAGCATGTTTGAC+CGG | + | chr7.3:30685273-30685292 | None:intergenic | 30.0% | |
| CATTATCAGGATCAAATAGT+GGG | - | chr7.3:30686732-30686751 | MS.gene058535:CDS | 30.0% | |
| GGAAAATCAATATTCAGTGA+GGG | - | chr7.3:30686580-30686599 | MS.gene058535:CDS | 30.0% | |
| GTCGGATAACATAGTTATTA+TGG | - | chr7.3:30686297-30686316 | MS.gene058535:intron | 30.0% | |
| GTTTATGAGTTTATGTTTCG+AGG | - | chr7.3:30684803-30684822 | MS.gene058535:intron | 30.0% | |
| TACCAGTCATTACATATTCT+GGG | + | chr7.3:30685808-30685827 | None:intergenic | 30.0% | |
| TCATTATCAGGATCAAATAG+TGG | - | chr7.3:30686731-30686750 | MS.gene058535:CDS | 30.0% | |
| TGGAAAATCAATATTCAGTG+AGG | - | chr7.3:30686579-30686598 | MS.gene058535:CDS | 30.0% | |
| TTGAATAAAGAAGGTCTTCA+AGG | - | chr7.3:30684599-30684618 | MS.gene058535:CDS | 30.0% | |
| ! | GGAATTGAATTGAATGGATT+TGG | - | chr7.3:30684902-30684921 | MS.gene058535:intron | 30.0% |
| !! | AAGTTGGTCTTATTCATTGT+GGG | - | chr7.3:30685900-30685919 | MS.gene058535:intron | 30.0% |
| !! | TTTCGTGCTGATTATATTCT+TGG | - | chr7.3:30684488-30684507 | MS.gene058535:CDS | 30.0% |
| !!! | TTTTGTTTGTTTGGTGTAGA+CGG | - | chr7.3:30684697-30684716 | MS.gene058535:CDS | 30.0% |
| ACAAGAATGATGATTGCACT+TGG | - | chr7.3:30685498-30685517 | MS.gene058535:intron | 35.0% | |
| ACATAGTTTACAGTTCAAGC+TGG | - | chr7.3:30686243-30686262 | MS.gene058535:intron | 35.0% | |
| ACATATACTAGGAAAGACCA+TGG | + | chr7.3:30686185-30686204 | None:intergenic | 35.0% | |
| ACCAACACTAGAACTTTGTA+AGG | + | chr7.3:30686699-30686718 | None:intergenic | 35.0% | |
| ACCAGTCATTACATATTCTG+GGG | + | chr7.3:30685807-30685826 | None:intergenic | 35.0% | |
| AGGAGTGATGTATATAGCTT+CGG | - | chr7.3:30686419-30686438 | MS.gene058535:CDS | 35.0% | |
| ATGTTATCCGACATGCTTAA+TGG | + | chr7.3:30686289-30686308 | None:intergenic | 35.0% | |
| ATTCAAAACCTTAACCGCAA+CGG | + | chr7.3:30684585-30684604 | None:intergenic | 35.0% | |
| ATTCTTGTAGCCCATGTTAA+AGG | + | chr7.3:30685486-30685505 | None:intergenic | 35.0% | |
| CAAATCAATTTCCTGTTCCA+TGG | - | chr7.3:30686165-30686184 | MS.gene058535:intron | 35.0% | |
| CATAGTTATTATGGCTCTCA+TGG | - | chr7.3:30686306-30686325 | MS.gene058535:intron | 35.0% | |
| CATTGATATGAACTTTCCTG+AGG | - | chr7.3:30685442-30685461 | MS.gene058535:CDS | 35.0% | |
| CCAACACTAGAACTTTGTAA+GGG | + | chr7.3:30686698-30686717 | None:intergenic | 35.0% | |
| CCAATCAACTTCACAAGATT+CGG | + | chr7.3:30684752-30684771 | None:intergenic | 35.0% | |
| GATTATATTCTTGGTGAAGG+AGG | - | chr7.3:30684497-30684516 | MS.gene058535:CDS | 35.0% | |
| GCTGATTATATTCTTGGTGA+AGG | - | chr7.3:30684494-30684513 | MS.gene058535:CDS | 35.0% | |
| GTCAGTTAGTCACGTAATAT+AGG | + | chr7.3:30685977-30685996 | None:intergenic | 35.0% | |
| GTTAGTCACGTAATATAGGA+AGG | + | chr7.3:30685973-30685992 | None:intergenic | 35.0% | |
| GTTTATGTTTCGAGGAAGTT+TGG | - | chr7.3:30684811-30684830 | MS.gene058535:intron | 35.0% | |
| TAGCAAGAATTTCTCCTAAG+TGG | - | chr7.3:30685221-30685240 | MS.gene058535:intron | 35.0% | |
| TATATTAGCACTGCAGTGTA+GGG | - | chr7.3:30685014-30685033 | MS.gene058535:intron | 35.0% | |
| TGTTATCCGACATGCTTAAT+GGG | + | chr7.3:30686288-30686307 | None:intergenic | 35.0% | |
| TGTTCCAAACATGCTCAATT+TGG | - | chr7.3:30685837-30685856 | MS.gene058535:intron | 35.0% | |
| TTGAAAACTTGTGACGCATT+CGG | + | chr7.3:30686796-30686815 | None:intergenic | 35.0% | |
| TTGAAGTCACGATAGATTAC+TGG | + | chr7.3:30685564-30685583 | None:intergenic | 35.0% | |
| TTTCGCTTATCATTGAGCTT+TGG | + | chr7.3:30686533-30686552 | None:intergenic | 35.0% | |
| ! | AATTTCTCCTAAGTGGCTTT+TGG | - | chr7.3:30685228-30685247 | MS.gene058535:intron | 35.0% |
| ! | AGACGGAAGTGAATTTTCTT+GGG | - | chr7.3:30684714-30684733 | MS.gene058535:CDS | 35.0% |
| ! | CACAAGTTTTCAAACAACGT+TGG | - | chr7.3:30686803-30686822 | MS.gene058535:CDS | 35.0% |
| ! | CTTTTCTCCATAATGCTGAA+AGG | - | chr7.3:30685538-30685557 | MS.gene058535:intron | 35.0% |
| ! | GGGTTTGGTACTGTTTATAA+AGG | - | chr7.3:30684518-30684537 | MS.gene058535:CDS | 35.0% |
| ! | TAGACGGAAGTGAATTTTCT+TGG | - | chr7.3:30684713-30684732 | MS.gene058535:CDS | 35.0% |
| ! | TGAATTTTCTTGGGCAGTTA+AGG | - | chr7.3:30684723-30684742 | MS.gene058535:CDS | 35.0% |
| ! | TGGCATATTTGAAATTGGTC+AGG | - | chr7.3:30686383-30686402 | MS.gene058535:CDS | 35.0% |
| !! | GAAGTTGGTCTTATTCATTG+TGG | - | chr7.3:30685899-30685918 | MS.gene058535:intron | 35.0% |
| !!! | GTTCTTTTGGAGCTTTTAAC+AGG | - | chr7.3:30686446-30686465 | MS.gene058535:intron | 35.0% |
| !!! | TACTTACTCTCTGTTGCTTT+TGG | - | chr7.3:30685670-30685689 | MS.gene058535:CDS | 35.0% |
| !!! | TTTTGGAGCTTTTAACAGGA+AGG | - | chr7.3:30686450-30686469 | MS.gene058535:intron | 35.0% |
| AAGTATGGGTACCATGAAGT+TGG | - | chr7.3:30685884-30685903 | MS.gene058535:intron | 40.0% | |
| AGGAACAAAGCTTGGTAGAT+TGG | - | chr7.3:30686501-30686520 | MS.gene058535:intron | 40.0% | |
| AGGCAACTGTTCCTTTAACA+TGG | - | chr7.3:30685472-30685491 | MS.gene058535:intron | 40.0% | |
| ATACATCACTCCTAGCTGTT+AGG | + | chr7.3:30686412-30686431 | None:intergenic | 40.0% | |
| ATATTAGCACTGCAGTGTAG+GGG | - | chr7.3:30685015-30685034 | MS.gene058535:intron | 40.0% | |
| ATGGAGAAAAGCAAGTCCTT+TGG | + | chr7.3:30685529-30685548 | None:intergenic | 40.0% | |
| CAACCCAAAATCAGAAAGCT+TGG | + | chr7.3:30685714-30685733 | None:intergenic | 40.0% | |
| CATGTACCCATTAAGCATGT+CGG | - | chr7.3:30686279-30686298 | MS.gene058535:intron | 40.0% | |
| CTATATTAGCACTGCAGTGT+AGG | - | chr7.3:30685013-30685032 | MS.gene058535:intron | 40.0% | |
| GAGTGATGTATATAGCTTCG+GGG | - | chr7.3:30686421-30686440 | MS.gene058535:CDS | 40.0% | |
| GCTTAGATCTGATGCAGAAT+CGG | + | chr7.3:30684360-30684379 | None:intergenic | 40.0% | |
| GGAACAAAGCTTGGTAGATT+GGG | - | chr7.3:30686502-30686521 | MS.gene058535:intron | 40.0% | |
| GGAGTGATGTATATAGCTTC+GGG | - | chr7.3:30686420-30686439 | MS.gene058535:CDS | 40.0% | |
| GGCAACTGTTCCTTTAACAT+GGG | - | chr7.3:30685473-30685492 | MS.gene058535:intron | 40.0% | |
| TCGACTACATCACTCATTAG+CGG | + | chr7.3:30686665-30686684 | None:intergenic | 40.0% | |
| TGAGTCAAAATCCCAAAGCA+AGG | - | chr7.3:30686639-30686658 | MS.gene058535:CDS | 40.0% | |
| TGTTGGACTCTGTAAGTTTC+TGG | - | chr7.3:30685598-30685617 | MS.gene058535:CDS | 40.0% | |
| TTCAAAACCTTAACCGCAAC+GGG | + | chr7.3:30684584-30684603 | None:intergenic | 40.0% | |
| TTTATAGCATGTTTGACCGG+CGG | + | chr7.3:30685270-30685289 | None:intergenic | 40.0% | |
| ! | ACAGCCAAGCTTTCTGATTT+TGG | - | chr7.3:30685707-30685726 | MS.gene058535:intron | 40.0% |
| ! | CAGCCAAGCTTTCTGATTTT+GGG | - | chr7.3:30685708-30685727 | MS.gene058535:intron | 40.0% |
| ! | CCCTTACAAAGTTCTAGTGT+TGG | - | chr7.3:30686695-30686714 | MS.gene058535:CDS | 40.0% |
| ! | CCGAATCTTGTGAAGTTGAT+TGG | - | chr7.3:30684749-30684768 | MS.gene058535:intron | 40.0% |
| ! | GTTGATTGGTTATTGCTGTG+AGG | - | chr7.3:30684763-30684782 | MS.gene058535:intron | 40.0% |
| ! | TTTTCAAACAACGTTGGTCC+AGG | - | chr7.3:30686809-30686828 | MS.gene058535:CDS | 40.0% |
| !! | CAAGCTTTCTGATTTTGGGT+TGG | - | chr7.3:30685712-30685731 | MS.gene058535:intron | 40.0% |
| !! | GATTGACAGCACTGATTCTT+AGG | - | chr7.3:30685071-30685090 | MS.gene058535:intron | 40.0% |
| !! | TTACTGGCCTTTCAGCATTA+TGG | + | chr7.3:30685548-30685567 | None:intergenic | 40.0% |
| !!! | ATTTTGGGTTGGCTAAAGCA+GGG | - | chr7.3:30685723-30685742 | MS.gene058535:intron | 40.0% |
| AACCGTATGTACCCATGACT+CGG | + | chr7.3:30685778-30685797 | None:intergenic | 45.0% | |
| AACTTTCCTGAGGTTTCCAG+AGG | - | chr7.3:30685452-30685471 | MS.gene058535:intron | 45.0% | |
| ACTAGGAAAGACCATGGAAC+AGG | + | chr7.3:30686179-30686198 | None:intergenic | 45.0% | |
| ACTTAAATCGCTTCCCGTTG+CGG | - | chr7.3:30684568-30684587 | MS.gene058535:CDS | 45.0% | |
| AGAAACCAAACCTCCCTTTC+CGG | - | chr7.3:30684293-30684312 | MS.gene058535:CDS | 45.0% | |
| AGTGCAACCAAAAGCCACTT+AGG | + | chr7.3:30685238-30685257 | None:intergenic | 45.0% | |
| ATTCTTGGTGAAGGAGGGTT+TGG | - | chr7.3:30684503-30684522 | MS.gene058535:CDS | 45.0% | |
| CGAGTAGTGGTAAAATGCAG+TGG | - | chr7.3:30684958-30684977 | MS.gene058535:intron | 45.0% | |
| GCAGACGAAGTCTCATTATC+AGG | - | chr7.3:30686719-30686738 | MS.gene058535:CDS | 45.0% | |
| GCCCCAGAATATGTAATGAC+TGG | - | chr7.3:30685803-30685822 | MS.gene058535:intron | 45.0% | |
| GTCTTCAAGGACATAGAGAG+TGG | - | chr7.3:30684612-30684631 | MS.gene058535:CDS | 45.0% | |
| GTTAAAGGAACAGTTGCCTC+TGG | + | chr7.3:30685471-30685490 | None:intergenic | 45.0% | |
| ! | AGCACAGAAAGCATGTAGTC+TGG | - | chr7.3:30686604-30686623 | MS.gene058535:CDS | 45.0% |
| ! | CATTGTGGGTTGTGATCAGA+TGG | - | chr7.3:30685914-30685933 | MS.gene058535:intron | 45.0% |
| ! | GGATCAAATAGTGGGAGTAG+TGG | - | chr7.3:30686740-30686759 | MS.gene058535:CDS | 45.0% |
| ! | TAGCTTCGGGGTTGTTCTTT+TGG | - | chr7.3:30686433-30686452 | MS.gene058535:intron | 45.0% |
| !! | ACCAAGCTTTGTTCCTTACC+CGG | + | chr7.3:30686497-30686516 | None:intergenic | 45.0% |
| !!! | GATTTTGGGTTGGCTAAAGC+AGG | - | chr7.3:30685722-30685741 | MS.gene058535:intron | 45.0% |
| !!! | TCTGTTGCTTTTGGCTCTAC+AGG | - | chr7.3:30685679-30685698 | MS.gene058535:intron | 45.0% |
| AACCCAAATTGCTCACCAGG+TGG | - | chr7.3:30686851-30686870 | MS.gene058535:CDS | 50.0% | |
| ACATGGGTTTCATCGCCTTG+AGG | + | chr7.3:30685749-30685768 | None:intergenic | 50.0% | |
| ACCCGAGTCATGGGTACATA+CGG | - | chr7.3:30685773-30685792 | MS.gene058535:intron | 50.0% | |
| ACCGGGTAAGGAACAAAGCT+TGG | - | chr7.3:30686493-30686512 | MS.gene058535:intron | 50.0% | |
| ACCGTATGTACCCATGACTC+GGG | + | chr7.3:30685777-30685796 | None:intergenic | 50.0% | |
| ACTCATTAGCGGCCTTGCTT+TGG | + | chr7.3:30686654-30686673 | None:intergenic | 50.0% | |
| CACCACCTGGTGAGCAATTT+GGG | + | chr7.3:30686856-30686875 | None:intergenic | 50.0% | |
| CATGTATCCACCCGAGTCAT+GGG | - | chr7.3:30685764-30685783 | MS.gene058535:intron | 50.0% | |
| CCAAACCCAAATTGCTCACC+AGG | - | chr7.3:30686848-30686867 | MS.gene058535:CDS | 50.0% | |
| CTCATTAGCGGCCTTGCTTT+GGG | + | chr7.3:30686653-30686672 | None:intergenic | 50.0% | |
| GTAGCTGTGTTGTCGAGTAG+TGG | - | chr7.3:30684945-30684964 | MS.gene058535:intron | 50.0% | |
| GTCCGTTGACAAAACCAGAC+CGG | - | chr7.3:30686475-30686494 | MS.gene058535:intron | 50.0% | |
| TCCGTTGACAAAACCAGACC+GGG | - | chr7.3:30686476-30686495 | MS.gene058535:intron | 50.0% | |
| TGACAAAACCAGACCGGGTA+AGG | - | chr7.3:30686481-30686500 | MS.gene058535:intron | 50.0% | |
| TTGGTCCAGGTGCAACTTGT+CGG | - | chr7.3:30686822-30686841 | MS.gene058535:CDS | 50.0% | |
| ! | CATGACTCGGGTGGATACAT+GGG | + | chr7.3:30685765-30685784 | None:intergenic | 50.0% |
| ! | CCTGGTGAGCAATTTGGGTT+TGG | + | chr7.3:30686851-30686870 | None:intergenic | 50.0% |
| ! | TGTGGGTTGTGATCAGATGG+AGG | - | chr7.3:30685917-30685936 | MS.gene058535:intron | 50.0% |
| !! | ATTGCACTTGGTGCTGCCAA+AGG | - | chr7.3:30685510-30685529 | MS.gene058535:intron | 50.0% |
| !! | GGAGGTTTGGTTTCTAGCTC+CGG | + | chr7.3:30684288-30684307 | None:intergenic | 50.0% |
| !! | GTTTGGTTTCTAGCTCCGGT+AGG | + | chr7.3:30684284-30684303 | None:intergenic | 50.0% |
| !!! | ACCCGGTCTGGTTTTGTCAA+CGG | + | chr7.3:30686480-30686499 | None:intergenic | 50.0% |
| !!! | ACTGCTGTTTTTCCTCTCGC+CGG | + | chr7.3:30684321-30684340 | None:intergenic | 50.0% |
| ATCGCTTCCCGTTGCGGTTA+AGG | - | chr7.3:30684574-30684593 | MS.gene058535:CDS | 55.0% | |
| CCATGTATCCACCCGAGTCA+TGG | - | chr7.3:30685763-30685782 | MS.gene058535:intron | 55.0% | |
| GCACCACCTGGTGAGCAATT+TGG | + | chr7.3:30686857-30686876 | None:intergenic | 55.0% | |
| GGTCAGGTCACCTAACAGCT+AGG | - | chr7.3:30686399-30686418 | MS.gene058535:CDS | 55.0% | |
| TTGCACTTGTTCTGTGCCGC+CGG | - | chr7.3:30685251-30685270 | MS.gene058535:intron | 55.0% | |
| TTGGCTAAAGCAGGGCCTCA+AGG | - | chr7.3:30685731-30685750 | MS.gene058535:intron | 55.0% | |
| TTGTTCGCGTTGTTCCACCG+CGG | + | chr7.3:30684398-30684417 | None:intergenic | 55.0% | |
| ! | CAGTTGCCTCTGGAAACCTC+AGG | + | chr7.3:30685461-30685480 | None:intergenic | 55.0% |
| ! | CCATGACTCGGGTGGATACA+TGG | + | chr7.3:30685766-30685785 | None:intergenic | 55.0% |
| ! | GCTTTGTTCCTTACCCGGTC+TGG | + | chr7.3:30686492-30686511 | None:intergenic | 55.0% |
| ! | GTATGTACCCATGACTCGGG+TGG | + | chr7.3:30685774-30685793 | None:intergenic | 55.0% |
| !! | TGGTTTCTAGCTCCGGTAGG+TGG | + | chr7.3:30684281-30684300 | None:intergenic | 55.0% |
| CAAACCTCCCTTTCCGGCAC+CGG | - | chr7.3:30684299-30684318 | MS.gene058535:CDS | 60.0% | |
| GGAGACCGACAAGTTGCACC+TGG | + | chr7.3:30686830-30686849 | None:intergenic | 60.0% | |
| GTGGTGCGCCTGCAGCATTA+CGG | - | chr7.3:30686870-30686889 | MS.gene058535:CDS | 60.0% | |
| ! | AGACTTGTTCAACGCCGCGG+TGG | - | chr7.3:30684381-30684400 | MS.gene058535:CDS | 60.0% |
| ! | GCGAGACTTGTTCAACGCCG+CGG | - | chr7.3:30684378-30684397 | MS.gene058535:CDS | 60.0% |
| ! | GTTTTTCCTCTCGCCGGTGC+CGG | + | chr7.3:30684315-30684334 | None:intergenic | 60.0% |
| AATGCTGCAGGCGCACCACC+TGG | + | chr7.3:30686869-30686888 | None:intergenic | 65.0% | |
| ! | CGGTGCCGGAAAGGGAGGTT+TGG | + | chr7.3:30684301-30684320 | None:intergenic | 65.0% |
| ! | CCTCTCGCCGGTGCCGGAAA+GGG | + | chr7.3:30684309-30684328 | None:intergenic | 70.0% |
| ! | TCCTCTCGCCGGTGCCGGAA+AGG | + | chr7.3:30684310-30684329 | None:intergenic | 70.0% |
| ! | CTCGCCGGTGCCGGAAAGGG+AGG | + | chr7.3:30684306-30684325 | None:intergenic | 75.0% |
| !! | CCCTTTCCGGCACCGGCGAG+AGG | - | chr7.3:30684306-30684325 | MS.gene058535:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 30684270 | 30686892 | 30684270 | ID=MS.gene058535 |
| chr7.3 | mRNA | 30684270 | 30686892 | 30684270 | ID=MS.gene058535.t1;Parent=MS.gene058535 |
| chr7.3 | exon | 30686525 | 30686892 | 30686525 | ID=MS.gene058535.t1.exon1;Parent=MS.gene058535.t1 |
| chr7.3 | CDS | 30686525 | 30686892 | 30686525 | ID=cds.MS.gene058535.t1;Parent=MS.gene058535.t1 |
| chr7.3 | exon | 30686311 | 30686446 | 30686311 | ID=MS.gene058535.t1.exon2;Parent=MS.gene058535.t1 |
| chr7.3 | CDS | 30686311 | 30686446 | 30686311 | ID=cds.MS.gene058535.t1;Parent=MS.gene058535.t1 |
| chr7.3 | exon | 30685554 | 30685690 | 30685554 | ID=MS.gene058535.t1.exon3;Parent=MS.gene058535.t1 |
| chr7.3 | CDS | 30685554 | 30685690 | 30685554 | ID=cds.MS.gene058535.t1;Parent=MS.gene058535.t1 |
| chr7.3 | exon | 30685338 | 30685461 | 30685338 | ID=MS.gene058535.t1.exon4;Parent=MS.gene058535.t1 |
| chr7.3 | CDS | 30685338 | 30685461 | 30685338 | ID=cds.MS.gene058535.t1;Parent=MS.gene058535.t1 |
| chr7.3 | exon | 30684270 | 30684745 | 30684270 | ID=MS.gene058535.t1.exon5;Parent=MS.gene058535.t1 |
| chr7.3 | CDS | 30684270 | 30684745 | 30684270 | ID=cds.MS.gene058535.t1;Parent=MS.gene058535.t1 |
| Gene Sequence |
| Protein sequence |
