AlfalfaGEDB | MS.gene27787

M. sativa cultivar XinJiangDaYe / MS.gene27787

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27787.t1	XP_013465933.1	97.8	92	2	0	37	128	155	246	1.30E-40	176

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27787.t1	P46604	71.1	97	26	1	37	133	151	245	3.7e-31	136.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27787.t1	A0A072VD79	97.8	92	2	0	37	128	155	246	9.6e-41	176.0

TFs/TRs:

Gene ID	Type	Classification
MS.gene27787.t1	TF	HB-HD-ZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051649	MS.gene27787	0.806313	8.74E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27787.t1	MTR_1g017090	95.726	117	4	1	37	152	155	271	2.30e-76	229
MS.gene27787.t1	MTR_5g014890	62.295	122	35	3	37	153	148	263	4.77e-45	149
MS.gene27787.t1	MTR_4g097600	74.444	90	21	1	37	126	152	239	2.00e-42	142
MS.gene27787.t1	MTR_1g054285	71.429	91	24	1	37	127	179	267	2.43e-41	140
MS.gene27787.t1	MTR_7g093430	71.429	91	24	1	37	127	185	273	3.25e-41	139
MS.gene27787.t1	MTR_2g061030	56.349	126	50	3	4	126	189	312	1.83e-39	136
MS.gene27787.t1	MTR_4g100550	57.522	113	38	3	37	148	145	248	4.47e-38	131
MS.gene27787.t1	MTR_5g013010	54.701	117	43	3	37	152	161	268	3.09e-37	129
MS.gene27787.t1	MTR_8g006705	67.416	89	26	2	37	124	171	257	5.73e-36	126
MS.gene27787.t1	MTR_3g103590	59.350	123	40	3	37	152	170	289	1.04e-33	120
MS.gene27787.t1	MTR_4g084750	54.455	101	41	2	29	124	81	181	7.02e-29	105
MS.gene27787.t1	MTR_2g038625	56.989	93	39	1	38	130	108	199	4.11e-26	98.6
MS.gene27787.t1	MTR_2g038580	56.989	93	39	1	38	130	108	199	4.11e-26	98.6
MS.gene27787.t1	MTR_4g126900	57.303	89	36	2	38	124	114	202	3.11e-24	94.0
MS.gene27787.t1	MTR_7g010020	50.000	70	28	1	37	99	105	174	2.65e-12	63.2
MS.gene27787.t1	MTR_6g007647	52.381	63	30	0	37	99	92	154	3.02e-12	62.8
MS.gene27787.t1	MTR_6g007647	52.381	63	30	0	37	99	58	120	3.45e-12	62.4
MS.gene27787.t1	MTR_5g039000	47.619	63	33	0	37	99	102	164	1.18e-11	61.2
MS.gene27787.t1	MTR_3g086790	36.441	118	65	2	37	147	85	199	1.77e-11	60.8
MS.gene27787.t1	MTR_3g080100	47.143	70	30	1	37	99	45	114	4.26e-11	58.9
MS.gene27787.t1	MTR_6g011610	50.725	69	27	1	37	98	121	189	5.08e-11	59.3
MS.gene27787.t1	MTR_8g468210	44.444	63	35	0	37	99	102	164	6.30e-11	59.3
MS.gene27787.t1	MTR_3g080100	47.143	70	30	1	37	99	84	153	6.40e-11	58.9
MS.gene27787.t1	MTR_6g011610	50.725	69	27	1	37	98	102	170	8.15e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27787.t1	AT4G37790	73.333	90	22	1	37	126	151	238	2.64e-42	142
MS.gene27787.t1	AT5G06710	65.049	103	31	2	37	139	215	312	1.41e-41	141
MS.gene27787.t1	AT2G22800	71.111	90	24	1	37	126	138	225	3.18e-39	134
MS.gene27787.t1	AT4G16780	56.637	113	39	3	37	148	154	257	1.27e-36	127
MS.gene27787.t1	AT5G47370	45.625	160	61	5	4	151	111	256	1.02e-34	122
MS.gene27787.t1	AT2G44910	64.835	91	29	2	37	126	188	276	1.50e-34	123
MS.gene27787.t1	AT3G60390	65.909	88	29	1	37	124	187	273	1.55e-34	122
MS.gene27787.t1	AT4G17460	60.870	92	35	1	37	128	160	250	9.88e-32	114
MS.gene27787.t1	AT2G01430	51.515	99	43	3	29	126	155	249	7.95e-25	96.7
MS.gene27787.t1	AT1G70920	48.000	100	39	2	37	134	64	152	1.22e-22	88.6
MS.gene27787.t1	AT1G70920	48.000	100	39	2	37	134	94	182	1.77e-22	89.0
MS.gene27787.t1	AT1G26960	41.111	90	49	2	38	127	97	182	1.42e-12	63.5
MS.gene27787.t1	AT5G15150	39.048	105	55	2	37	134	140	242	6.06e-11	59.3

Find 0 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AGAAAAAAAATTAAATTCTA+AGG	-	8583:27381-27400	MS.gene27787:intergenic	10.0%
!!	AAACAAAGAAGTAAAATATA+TGG	-	8583:27792-27811	MS.gene27787:intergenic	15.0%
!!	AAGTTTATAAAAATTGTTTC+AGG	-	8583:27286-27305	MS.gene27787:intergenic	15.0%
!!!	ACAATTTTTATAAACTTGTA+CGG	+	8583:27289-27308	MS.gene27787:intron	15.0%
!!!	ATTTTATTAGAATTAGATCT+TGG	+	8583:27076-27095	MS.gene27787:intron	15.0%
!!	AAATTTGTAATACATTGGAT+TGG	-	8583:27424-27443	MS.gene27787:intergenic	20.0%
!!	AGTTTCAAAATTTATTCTCT+TGG	+	8583:27157-27176	MS.gene27787:intron	20.0%
!!	ATATAATTTCACAAAATCTG+AGG	-	8583:28088-28107	MS.gene27787:intergenic	20.0%
!!	ATGAGAATATTGATGAATTA+AGG	-	8583:26791-26810	MS.gene27787:intergenic	20.0%
!!	CTACAAAATTTGTAATACAT+TGG	-	8583:27429-27448	MS.gene27787:intergenic	20.0%
!!	TTTCAGGAAATTATTTATTC+TGG	-	8583:27270-27289	MS.gene27787:intergenic	20.0%
!!!	ACTTCTTTGTTTTTTTTTAC+TGG	+	8583:27800-27819	MS.gene27787:intron	20.0%
!!!	CATTTTTTTAGAAATGTTTC+TGG	+	8583:27338-27357	MS.gene27787:intron	20.0%
!!!	GAAACATTTCTAAAAAAATG+AGG	-	8583:27338-27357	MS.gene27787:intergenic	20.0%
!	ACAAAAAATGTTAACAGCTA+GGG	+	8583:27994-28013	MS.gene27787:intron	25.0%
!	AGACGTTTAAAAAGTTTAGA+AGG	-	8583:28035-28054	MS.gene27787:intergenic	25.0%
!	ATATATATTGTTAGAGCGAA+AGG	+	8583:27903-27922	MS.gene27787:intron	25.0%
!	ATATTGATGAATTAAGGTAC+CGG	-	8583:26785-26804	MS.gene27787:intergenic	25.0%
!	CATCAATATTCTCATATCTT+TGG	+	8583:26796-26815	MS.gene27787:intron	25.0%
!!	AAAACAACAATCAGAAGTTT+TGG	+	8583:26727-26746	MS.gene27787:CDS	25.0%
!!	AATATCAAAACAAAAGTACG+TGG	-	8583:26851-26870	MS.gene27787:intergenic	25.0%
	AAAAGTTTAGAAGGAGGTTT+AGG	-	8583:28026-28045	MS.gene27786:intergenic	30.0%
	AAAGTTTAGAAGGAGGTTTA+GGG	-	8583:28025-28044	MS.gene27786:intergenic	30.0%
	ATCATCATGACAATTGCTAA+TGG	-	8583:27670-27689	MS.gene27787:intergenic	30.0%
	CACAAAAAATGTTAACAGCT+AGG	+	8583:27993-28012	MS.gene27787:intron	30.0%
	CGTTTAAAAAGTTTAGAAGG+AGG	-	8583:28032-28051	MS.gene27787:intergenic	30.0%
	GCTGGAATCTTCATATAAAA+GGG	-	8583:28279-28298	MS.gene27787:intergenic	30.0%
	GGTAAAATCTTGATATTCCT+AGG	+	8583:27219-27238	MS.gene27787:intron	30.0%
	TATGAAGCAAACTCAATCTA+AGG	-	8583:27138-27157	MS.gene27787:intergenic	30.0%
	TGCTGGAATCTTCATATAAA+AGG	-	8583:28280-28299	MS.gene27787:intergenic	30.0%
	TTAGAATTAGATCTTGGTCT+TGG	+	8583:27082-27101	MS.gene27787:intron	30.0%
	TTCACAAAATCTGAGGAATA+AGG	-	8583:28081-28100	MS.gene27787:intergenic	30.0%
!	AAAACAAAAGTACGTGGTAT+AGG	-	8583:26845-26864	MS.gene27787:intergenic	30.0%
!	ATTTTACCAAACACTTTGGT+GGG	-	8583:27207-27226	MS.gene27787:intergenic	30.0%
!	CAAGATTTTACCAAACACTT+TGG	-	8583:27211-27230	MS.gene27787:intergenic	30.0%
!	TCTCTTGGATTACATTTTCT+AGG	+	8583:27172-27191	MS.gene27787:intron	30.0%
	AAGGTAAAGTATGCGATCAA+AGG	-	8583:28062-28081	MS.gene27786:intergenic	35.0%
	AGGTAAAGTATGCGATCAAA+GGG	-	8583:28061-28080	MS.gene27787:intergenic	35.0%
	CAGAACAAAGCTGAAACAAA+CGG	+	8583:28143-28162	MS.gene27787:intron	35.0%
	CGATACTATCTTAAAACGCA+CGG	-	8583:27601-27620	MS.gene27787:intergenic	35.0%
	CTTGATATTCCTAGGAAAGT+TGG	+	8583:27227-27246	MS.gene27787:intron	35.0%
!	AGAGCATTCTACTCTTAATC+CGG	+	8583:26763-26782	MS.gene27787:CDS	35.0%
!	ATATTCCTAGGAAAGTTGGT+AGG	+	8583:27231-27250	MS.gene27787:intron	35.0%
!	ATTATTCCCACCAAAGTGTT+TGG	+	8583:27198-27217	MS.gene27787:intron	35.0%
!	GATTTTACCAAACACTTTGG+TGG	-	8583:27208-27227	MS.gene27787:intergenic	35.0%
!	TAGAGGTGTGGTTTCAAAAT+CGG	+	8583:27554-27573	MS.gene27787:CDS	35.0%
!	TCTAAGGTGTGTTTGTTTCA+AGG	-	8583:27365-27384	MS.gene27787:intergenic	35.0%
!!	ACAACAATCAGAAGTTTTGG+AGG	+	8583:26730-26749	MS.gene27787:CDS	35.0%
	AAGCAATGTTGTTGAGGGTA+AGG	-	8583:28361-28380	MS.gene27786:intergenic	40.0%
	AGCAAATAAGCTGAATCTGC+AGG	+	8583:27522-27541	MS.gene27787:CDS	40.0%
	AGGAGAAAACTTAGATGGCA+CGG	+	8583:27923-27942	MS.gene27787:intron	40.0%
	ATTTGTGGTGGCAACAACAA+TGG	+	8583:28333-28352	MS.gene27787:CDS	40.0%
	CCAGTAAGCAATGTTGTTGA+GGG	-	8583:28366-28385	MS.gene27787:intergenic	40.0%
	GCGAAAGGAGAAAACTTAGA+TGG	+	8583:27918-27937	MS.gene27787:intron	40.0%
	GGAGAACAAGAAGTTGCAAA+AGG	+	8583:28212-28231	MS.gene27787:CDS	40.0%
	TATTCTCTACGTGCGCAATA+TGG	-	8583:27960-27979	MS.gene27787:intergenic	40.0%
	TGAGCCTAAGTTTCTTCCTT+GGG	-	8583:26706-26725	MS.gene27787:intergenic	40.0%
!	CACGCACAGTATTTTTCTCA+TGG	+	8583:26978-26997	MS.gene27787:intron	40.0%
!	TGGTCTTGGTTGATTGTGTT+TGG	+	8583:27096-27115	MS.gene27787:intron	40.0%
	ACACACCTACCAACTTTCCT+AGG	-	8583:27239-27258	MS.gene27786:intergenic	45.0%
	CACAAATTGTCTCGCACGAA+GGG	-	8583:28320-28339	MS.gene27787:intergenic	45.0%
	CCCTCAACAACATTGCTTAC+TGG	+	8583:28363-28382	MS.gene27787:CDS	45.0%
	GCCAGTAAGCAATGTTGTTG+AGG	-	8583:28367-28386	MS.gene27787:intergenic	45.0%
	GTAGCCCAAGGAAGAAACTT+AGG	+	8583:26699-26718	MS.gene27787:CDS	45.0%
	GTGAGCCTAAGTTTCTTCCT+TGG	-	8583:26707-26726	MS.gene27787:intergenic	45.0%
	GTGTTGCGAATCTCTAACAG+AGG	+	8583:28191-28210	MS.gene27787:CDS	45.0%
	AGGCTAGACAAGTAGAGGTG+TGG	+	8583:27542-27561	MS.gene27787:CDS	50.0%
	CCACAAATTGTCTCGCACGA+AGG	-	8583:28321-28340	MS.gene27787:intergenic	50.0%
	CCTTCGTGCGAGACAATTTG+TGG	+	8583:28318-28337	MS.gene27787:CDS	50.0%
	GCACGGAGCAGTAAATTACC+TGG	-	8583:27584-27603	MS.gene27787:intergenic	50.0%
	GGTTTCAAAATCGGAGAGCC+AGG	+	8583:27563-27582	MS.gene27787:CDS	50.0%
	TCGTGCGAGACAATTTGTGG+TGG	+	8583:28321-28340	MS.gene27787:CDS	50.0%
	TCTGCAGGCTAGACAAGTAG+AGG	+	8583:27537-27556	MS.gene27787:CDS	50.0%
!	CAGATGGTAAGTGTTGCTGC+TGG	-	8583:28297-28316	MS.gene27787:intergenic	50.0%
	TGTCTCGCACGAAGGGCAGA+TGG	-	8583:28313-28332	MS.gene27787:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
8583	gene	26696	28419	26696	ID=MS.gene27787
8583	mRNA	26696	28419	26696	ID=MS.gene27787.t1;Parent=MS.gene27787
8583	exon	26696	26784	26696	ID=MS.gene27787.t1.exon1;Parent=MS.gene27787.t1
8583	CDS	26696	26784	26696	ID=cds.MS.gene27787.t1;Parent=MS.gene27787.t1
8583	exon	27486	27584	27486	ID=MS.gene27787.t1.exon2;Parent=MS.gene27787.t1
8583	CDS	27486	27584	27486	ID=cds.MS.gene27787.t1;Parent=MS.gene27787.t1
8583	exon	28146	28419	28146	ID=MS.gene27787.t1.exon3;Parent=MS.gene27787.t1
8583	CDS	28146	28419	28146	ID=cds.MS.gene27787.t1;Parent=MS.gene27787.t1

Gene Sequence

>MS.gene27787

ATGGTAGCCCAAGGAAGAAACTTAGGCTCACAAAACAACAATCAGAAGTTTTGGAGGAAAACTTCAAAGAGCATTCTACTCTTAATCCGGTACCTTAATTCATCAATATTCTCATATCTTTGGTTGCTTTAAATAATTCTTTTGCTCCTATACCACGTACTTTTGTTTTGATATTTTTATTTTAGTACTAATAACTATTTTATATATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGACACACACGCACAGTATTTTTCTCATGGCACACTAATTGTGTGTAGCATATAGTAAATGAAGAATATGATATCATTTTAAACGAGTTTTCTCGATGATATTTGATTTTATTAGAATTAGATCTTGGTCTTGGTTGATTGTGTTTGGTCTAAAACTGAGAAGACCTTAGATTGAGTTTGCTTCATAGTTTCAAAATTTATTCTCTTGGATTACATTTTCTAGGAATATTATTCCCACCAAAGTGTTTGGTAAAATCTTGATATTCCTAGGAAAGTTGGTAGGTGTGTTTTATTTTCCAGAATAAATAATTTCCTGAAACAATTTTTATAAACTTGTACGGAATATAATAATATTAAATTCTAACCTCATTTTTTTAGAAATGTTTCTGGACCTTGAAACAAACACACCTTAGAATTTAATTTTTTTTCTAATTTGTGCAATTGCTACATCCAATCCAATGTATTACAAATTTTGTAGCATGAGTATATGTTGCTTTGTTATTATTAATAAAAAGAAAATCTCATTTTCTTCAGAAGCAAAAGCAAGCATTAGCAAATAAGCTGAATCTGCAGGCTAGACAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGTAATTTACTGCTCCGTGCGTTTTAAGATAGTATCGTTTAAAGTTCTTTTATATAGATTAAAAAATTTACAAAACTGTTTATCCATTAGCAATTGTCATGATGATGCATAACAAAATATAATGTCTTGAGACTTATGTACACACAAAAAGTTGTGATAAAATTGAAATAATGAAATTATACTATTGATGTTACATTAAAAAGTACCATATATTTTACTTCTTTGTTTTTTTTTACTGGATCGCACATACTTTACTTTATTGCTTCTTTAATAGATAAATGTTACTTTTTTTAATAATAAATAAATGTTACTTGTTAGTATATATATTGTTAGAGCGAAAGGAGAAAACTTAGATGGCACGGATCTCAACTCTCCATATTGCGCACGTAGAGAATACTCGATTTACACACACAAAAAATGTTAACAGCTAGGGTCAAACCCTAAACCTCCTTCTAAACTTTTTAAACGTCTCGACCCTTTGATCGCATACTTTACCTTATTCCTCAGATTTTGTGAAATTATATTTCTTGCATATACTAATGATTACTATATACATGTTCAGAACAAAGCTGAAACAAACGGAATCTGATTGTGAAATACTGAAGAAGTGTTGCGAATCTCTAACAGAGGAGAACAAGAAGTTGCAAAAGGAGCTACAAGAACTAAAGTCAATGCAAACAGTAGCAGCAGCACCCTTTTATATGAAGATTCCAGCAGCAACACTTACCATCTGCCCTTCGTGCGAGACAATTTGTGGTGGCAACAACAATGGCTCCTTACCCTCAACAACATTGCTTACTGGCTCAAAGAATCATCATTTCCATAAAAACTTTTTG

Protein sequence

>MS.gene27787.t1

MVAQGRNLGSQNNNQKFWRKTSKSILLLIRKSHFLQKQKQALANKLNLQARQVEVWFQNRRARTKLKQTESDCEILKKCCESLTEENKKLQKELQELKSMQTVAAAPFYMKIPAATLTICPSCETICGGNNNGSLPSTTLLTGSKNHHFHKNFL