Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28252.t1 | RHN66111.1 | 93.2 | 44 | 3 | 0 | 2 | 45 | 1 | 44 | 5.00E-10 | 75.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28252.t1 | A0A072UUW0 | 93.2 | 44 | 3 | 0 | 2 | 45 | 1 | 44 | 3.6e-10 | 75.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057717 | MS.gene28252 | 0.807715 | 4.41E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28252.t1 | MTR_3g026290 | 78.889 | 360 | 30 | 1 | 2 | 315 | 1 | 360 | 9.55e-160 | 450 |
| MS.gene28252.t1 | MTR_3g026330 | 75.000 | 360 | 28 | 3 | 2 | 315 | 1 | 344 | 1.60e-144 | 411 |
| MS.gene28252.t1 | MTR_3g026230 | 62.975 | 316 | 51 | 8 | 2 | 315 | 1 | 252 | 4.75e-89 | 266 |
| MS.gene28252.t1 | MTR_3g026160 | 71.351 | 185 | 37 | 7 | 2 | 177 | 1 | 178 | 6.10e-57 | 182 |
| MS.gene28252.t1 | MTR_3g026160 | 72.667 | 150 | 31 | 4 | 176 | 315 | 35 | 184 | 3.19e-42 | 144 |
| MS.gene28252.t1 | MTR_3g026160 | 68.000 | 150 | 34 | 3 | 107 | 253 | 39 | 177 | 1.68e-39 | 137 |
| MS.gene28252.t1 | MTR_3g026240 | 50.000 | 108 | 41 | 2 | 2 | 98 | 1 | 106 | 5.61e-23 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28252.t1 | AT5G09530 | 53.372 | 341 | 116 | 8 | 9 | 308 | 2 | 340 | 2.11e-70 | 223 |
| MS.gene28252.t1 | AT5G09530 | 55.631 | 293 | 87 | 9 | 36 | 307 | 100 | 370 | 1.46e-58 | 192 |
| MS.gene28252.t1 | AT5G09530 | 58.537 | 246 | 70 | 4 | 81 | 309 | 39 | 269 | 4.53e-58 | 191 |
| MS.gene28252.t1 | AT5G09520 | 55.238 | 105 | 42 | 1 | 200 | 304 | 31 | 130 | 2.22e-19 | 82.8 |
| MS.gene28252.t1 | AT5G09520 | 59.596 | 99 | 31 | 2 | 103 | 201 | 37 | 126 | 1.09e-18 | 81.3 |
| MS.gene28252.t1 | AT5G09520 | 56.701 | 97 | 37 | 1 | 186 | 282 | 39 | 130 | 9.03e-18 | 78.6 |
| MS.gene28252.t1 | AT5G09520 | 41.176 | 153 | 52 | 4 | 8 | 156 | 9 | 127 | 3.54e-17 | 77.0 |
| MS.gene28252.t1 | AT5G09520 | 60.256 | 78 | 26 | 1 | 231 | 308 | 40 | 112 | 9.10e-16 | 73.2 |
| MS.gene28252.t1 | AT5G09520 | 52.885 | 104 | 42 | 2 | 146 | 249 | 34 | 130 | 1.59e-14 | 69.7 |
| MS.gene28252.t1 | AT5G09520 | 47.826 | 115 | 42 | 2 | 124 | 238 | 34 | 130 | 9.12e-14 | 67.8 |
Find 102 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTAGATTTGGCATTTC+AGG | 0.197804 | 3.3:+18275505 | None:intergenic |
| AGTTCAGGCTTTGGCATTTC+AGG | 0.201344 | 3.3:+18275334 | None:intergenic |
| TGCTCTAGCTTAGGTGATTC+AGG | 0.217501 | 3.3:+18275400 | None:intergenic |
| CTCGGGGACTTTAGGGAGTT+TGG | 0.229602 | 3.3:+18275015 | None:intergenic |
| TCAGGTACTTTAGGAATTTC+AGG | 0.229861 | 3.3:+18275352 | None:intergenic |
| TTAGGTAACTCGGGGACTTT+AGG | 0.244084 | 3.3:+18275007 | None:intergenic |
| CTCTGGTACTTTAGGAATCT+TGG | 0.245270 | 3.3:+18274949 | None:intergenic |
| TCAGGTACCTTTGGAAAATC+TGG | 0.263505 | 3.3:+18275595 | None:intergenic |
| TAGTTCAGGCTTTGGTAATT+CGG | 0.273135 | 3.3:+18275471 | None:intergenic |
| TTTGGAGTTTCTGGGACTTT+AGG | 0.275111 | 3.3:+18274875 | None:intergenic |
| TCAGGTACCTCAGGGGCTTT+AGG | 0.279754 | 3.3:+18275205 | None:intergenic |
| TTAGGTAACTCTGGTACTTT+AGG | 0.280417 | 3.3:+18274941 | None:intergenic |
| TTTGGCATTTCAGGTACTTT+AGG | 0.284794 | 3.3:+18275343 | None:intergenic |
| AAATCTGGCTTTGGTAATTC+AGG | 0.286277 | 3.3:+18275610 | None:intergenic |
| AGCTCGAGTTTCGGCAGTTC+AGG | 0.287779 | 3.3:+18275295 | None:intergenic |
| TTCAGGTACATTTGGTAAAT+CGG | 0.295675 | 3.3:+18275522 | None:intergenic |
| TTTGGTAATTCGGGCCCTTT+AGG | 0.297052 | 3.3:+18275481 | None:intergenic |
| ACTTTAGGGAGTTTGGGTTT+TGG | 0.297248 | 3.3:+18275022 | None:intergenic |
| TTAGGGAATTCAGGGGCTTT+AGG | 0.299732 | 3.3:+18275271 | None:intergenic |
| TTAGGTAATTCAGGAACTTT+AGG | 0.308829 | 3.3:+18275073 | None:intergenic |
| ACTTTAGGTAGCTCAGGTTT+TGG | 0.309843 | 3.3:+18274890 | None:intergenic |
| ACATCAGGCTTTGGTAATTC+AGG | 0.321267 | 3.3:+18275577 | None:intergenic |
| ACATTTGGTAAATCGGGTTT+TGG | 0.322738 | 3.3:+18275529 | None:intergenic |
| ACTTTAGGAATTTCAGGTTT+TGG | 0.325465 | 3.3:+18275358 | None:intergenic |
| ACATCCGACTTAGGGAATTC+AGG | 0.330532 | 3.3:+18275262 | None:intergenic |
| CCTTTAGGAATTTCTAGATT+TGG | 0.339409 | 3.3:+18275496 | None:intergenic |
| ACCTTTGGAAAATCTGGCTT+TGG | 0.350834 | 3.3:+18275601 | None:intergenic |
| AACTTAGGTAGTTCAGGCTT+TGG | 0.356849 | 3.3:+18275325 | None:intergenic |
| ACATTAAACTTAGGTAGTTC+AGG | 0.365954 | 3.3:+18275319 | None:intergenic |
| TAGGTAACTCGGGGACTTTA+GGG | 0.367520 | 3.3:+18275008 | None:intergenic |
| AACTCAGGTTTAGGTAATTC+AGG | 0.368433 | 3.3:+18275064 | None:intergenic |
| AGTTCAGGCTTTGGTAATTC+GGG | 0.369186 | 3.3:+18275472 | None:intergenic |
| CAATTCAGGAACGCTAATCT+TGG | 0.371647 | 3.3:+18275447 | None:intergenic |
| TTTGGCATTTCAGGTACATT+TGG | 0.374470 | 3.3:+18275514 | None:intergenic |
| TCTGGTACTTTAGGAATCTT+GGG | 0.381324 | 3.3:+18274950 | None:intergenic |
| ACCTTAGGAACATCAGGCTT+TGG | 0.384574 | 3.3:+18275568 | None:intergenic |
| TCGGGGACTTTAGGGAGTTT+GGG | 0.388929 | 3.3:+18275016 | None:intergenic |
| AATGATTGTTGACAAATTGA+TGG | 0.389721 | 3.3:+18275765 | None:intergenic |
| ACCTTAGGCTGCTCTAGTTT+AGG | 0.391315 | 3.3:+18274989 | None:intergenic |
| ACGCTAATCTTGGGTAGTTC+AGG | 0.392885 | 3.3:+18275457 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+TGG | 0.398494 | 3.3:+18275586 | None:intergenic |
| GCTTTAGGAAGCTCATGTTT+TGG | 0.402936 | 3.3:+18275220 | None:intergenic |
| ACCTTAGATAGCCCTGGTTC+AGG | 0.407392 | 3.3:+18275187 | None:intergenic |
| AATAGTAACACAAGGGTTGC+CGG | 0.407920 | 3.3:-18275709 | MS.gene28252:CDS |
| AATTCAGGTAAAGATGGTTT+TGG | 0.410060 | 3.3:+18275625 | None:intergenic |
| AGAGGTGGAAAATCAAGTTT+TGG | 0.411861 | 3.3:+18275649 | None:intergenic |
| TCAGGTACATTTGGTAAATC+GGG | 0.418005 | 3.3:+18275523 | None:intergenic |
| GTGGTGGTTGGAACGACTTT+TGG | 0.422489 | 3.3:+18274857 | None:intergenic |
| ACCTGAACCAGGGCTATCTA+AGG | 0.429236 | 3.3:-18275188 | MS.gene28252:CDS |
| ATCCTAGGCAACTCAGGTTT+AGG | 0.429295 | 3.3:+18275055 | None:intergenic |
| AGCCCTGGTTCAGGTACCTC+AGG | 0.431178 | 3.3:+18275196 | None:intergenic |
| TTTGGAAGTTTAGGAACCTT+AGG | 0.433663 | 3.3:+18275238 | None:intergenic |
| TTTGTCAATTCAGGAACCTT+AGG | 0.435005 | 3.3:+18274974 | None:intergenic |
| ATCTTGGGTAGTTCAGGCTT+TGG | 0.438580 | 3.3:+18275463 | None:intergenic |
| TCTGGGACTTTAGGTAGCTC+AGG | 0.441189 | 3.3:+18274884 | None:intergenic |
| GCCCCTGAGGTACCTGAACC+AGG | 0.441907 | 3.3:-18275199 | MS.gene28252:CDS |
| TTTGGCAATTCAGGAACCTT+AGG | 0.442441 | 3.3:+18275376 | None:intergenic |
| TTTGGTAATTCAGGTAAAGA+TGG | 0.452436 | 3.3:+18275619 | None:intergenic |
| TTTGGAAATTCAGGAACCTT+AGG | 0.453696 | 3.3:+18274908 | None:intergenic |
| CATCCGACTTAGGGAATTCA+GGG | 0.455443 | 3.3:+18275263 | None:intergenic |
| ATAGTAACACAAGGGTTGCC+GGG | 0.455490 | 3.3:-18275708 | MS.gene28252:CDS |
| ACCTTAGGCAATTCTAGCTT+AGG | 0.455532 | 3.3:+18274923 | None:intergenic |
| TTTGGCATTTCGGGAATCCT+AGG | 0.456930 | 3.3:+18275040 | None:intergenic |
| CTGCTCTAGTTTAGGTAACT+CGG | 0.471107 | 3.3:+18274997 | None:intergenic |
| ACATTAACCTTAGGAACATC+AGG | 0.473012 | 3.3:+18275562 | None:intergenic |
| TGCTCTAGTTTAGGTAACTC+GGG | 0.474750 | 3.3:+18274998 | None:intergenic |
| GCTCTAGCTTAGGTGATTCA+GGG | 0.478301 | 3.3:+18275401 | None:intergenic |
| CAAATCTAGAAATTCCTAAA+GGG | 0.482792 | 3.3:-18275495 | MS.gene28252:CDS |
| CCCTAAGTCGGATGTTCCTA+AGG | 0.483588 | 3.3:-18275254 | MS.gene28252:CDS |
| CCAAATCTAGAAATTCCTAA+AGG | 0.493421 | 3.3:-18275496 | MS.gene28252:CDS |
| CCTTAGGAACATCCGACTTA+GGG | 0.496338 | 3.3:+18275254 | None:intergenic |
| ACCTTAGGAACATCCGACTT+AGG | 0.497442 | 3.3:+18275253 | None:intergenic |
| GCTTTAGGAAGCTCGAGTTT+CGG | 0.497852 | 3.3:+18275286 | None:intergenic |
| TCAGGAACTTTAGGCAACTC+AGG | 0.512033 | 3.3:+18275082 | None:intergenic |
| AGTTCAGGAACATTAAACTT+AGG | 0.512127 | 3.3:+18275310 | None:intergenic |
| CTCTAGAAGATTGCGTGCCC+CGG | 0.517761 | 3.3:+18275690 | None:intergenic |
| ACCAAAGCCTGATGTTCCTA+AGG | 0.518566 | 3.3:-18275569 | MS.gene28252:CDS |
| AATTCAGGAACGCTAATCTT+GGG | 0.520856 | 3.3:+18275448 | None:intergenic |
| AATTGTGGCTTAGGTAACTC+AGG | 0.521409 | 3.3:+18275130 | None:intergenic |
| GCCCTGGTTCAGGTACCTCA+GGG | 0.523768 | 3.3:+18275197 | None:intergenic |
| ACCTTAGGCTGCTCTAGCTT+AGG | 0.528580 | 3.3:+18275391 | None:intergenic |
| CCAACTTAAGGCGTGGTGGT+TGG | 0.535712 | 3.3:+18274845 | None:intergenic |
| TCGGGAATCCTAGGCAACTC+AGG | 0.539174 | 3.3:+18275049 | None:intergenic |
| AATTCTAGCTTAGGTAACTC+TGG | 0.540159 | 3.3:+18274932 | None:intergenic |
| TCAGAAACCTTAGATAGCCC+TGG | 0.540598 | 3.3:+18275181 | None:intergenic |
| TACCTAAACCTGAGTTGCCT+AGG | 0.549181 | 3.3:-18275057 | MS.gene28252:CDS |
| AACTCAGGAACATTAACCTT+AGG | 0.557377 | 3.3:+18275553 | None:intergenic |
| ACCTAAGCTAGAATTGCCTA+AGG | 0.583284 | 3.3:-18274924 | MS.gene28252:CDS |
| ACCTAAGCTAGAGCAGCCTA+AGG | 0.584617 | 3.3:-18275392 | MS.gene28252:CDS |
| AGCCCCTGAATTCCCTAAGT+CGG | 0.589665 | 3.3:-18275266 | MS.gene28252:CDS |
| CCAAGTTCCAACTTAAGGCG+TGG | 0.615492 | 3.3:+18274838 | None:intergenic |
| ACCTAAACTAGAGCAGCCTA+AGG | 0.623761 | 3.3:-18274990 | MS.gene28252:CDS |
| CCCCTGAGGTACCTGAACCA+GGG | 0.624156 | 3.3:-18275198 | MS.gene28252:CDS |
| TAGTAACACAAGGGTTGCCG+GGG | 0.629976 | 3.3:-18275707 | MS.gene28252:CDS |
| ATTGTGGCTTAGGTAACTCA+GGG | 0.633142 | 3.3:+18275131 | None:intergenic |
| TGTCAACAAATAGTAACACA+AGG | 0.643639 | 3.3:-18275717 | MS.gene28252:CDS |
| CCCTGGTTCAGGTACCTCAG+GGG | 0.652309 | 3.3:+18275198 | None:intergenic |
| GTCAACAAATAGTAACACAA+GGG | 0.665196 | 3.3:-18275716 | MS.gene28252:CDS |
| GCTCTAGTTTAGGTAACTCG+GGG | 0.677089 | 3.3:+18274999 | None:intergenic |
| AGTTCCAACTTAAGGCGTGG+TGG | 0.679624 | 3.3:+18274841 | None:intergenic |
| ATCCGACTTAGGGAATTCAG+GGG | 0.692397 | 3.3:+18275264 | None:intergenic |
| TGAGCTTCCTAAAGCCCCTG+AGG | 0.716497 | 3.3:-18275212 | MS.gene28252:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGATTGTTGACAAATTGA+TGG | + | chr3.3:18274863-18274882 | None:intergenic | 25.0% |
| ! | CAAATCTAGAAATTCCTAAA+GGG | - | chr3.3:18275130-18275149 | MS.gene28252:CDS | 25.0% |
| ACATTAAACTTAGGTAGTTC+AGG | + | chr3.3:18275309-18275328 | None:intergenic | 30.0% | |
| AGTTCAGGAACATTAAACTT+AGG | + | chr3.3:18275318-18275337 | None:intergenic | 30.0% | |
| CCAAATCTAGAAATTCCTAA+AGG | - | chr3.3:18275129-18275148 | MS.gene28252:CDS | 30.0% | |
| GTCAACAAATAGTAACACAA+GGG | - | chr3.3:18274909-18274928 | MS.gene28252:CDS | 30.0% | |
| TGTCAACAAATAGTAACACA+AGG | - | chr3.3:18274908-18274927 | MS.gene28252:CDS | 30.0% | |
| TTAGGTAATTCAGGAACTTT+AGG | + | chr3.3:18275555-18275574 | None:intergenic | 30.0% | |
| TTCAGGTACATTTGGTAAAT+CGG | + | chr3.3:18275106-18275125 | None:intergenic | 30.0% | |
| ! | AATTCAGGTAAAGATGGTTT+TGG | + | chr3.3:18275003-18275022 | None:intergenic | 30.0% |
| ! | ATTTCTAGATTTGGCATTTC+AGG | + | chr3.3:18275123-18275142 | None:intergenic | 30.0% |
| ! | CCTTTAGGAATTTCTAGATT+TGG | + | chr3.3:18275132-18275151 | None:intergenic | 30.0% |
| ! | TTTGGTAATTCAGGTAAAGA+TGG | + | chr3.3:18275009-18275028 | None:intergenic | 30.0% |
| ! | TTTGTCAATTCAGGAGTTTT+AGG | + | chr3.3:18275522-18275541 | None:intergenic | 30.0% |
| !! | ATTTTAGGCAATTCAGGTTT+TGG | + | chr3.3:18275474-18275493 | None:intergenic | 30.0% |
| !!! | ACTTTAGGAATTTCAGGTTT+TGG | + | chr3.3:18275270-18275289 | None:intergenic | 30.0% |
| AACTCAGGAACATTAACCTT+AGG | + | chr3.3:18275075-18275094 | None:intergenic | 35.0% | |
| AACTCAGGTTTAGGTAATTC+AGG | + | chr3.3:18275564-18275583 | None:intergenic | 35.0% | |
| AATTCAGGAACGCTAATCTT+GGG | + | chr3.3:18275180-18275199 | None:intergenic | 35.0% | |
| ACATTAACCTTAGGAACATC+AGG | + | chr3.3:18275066-18275085 | None:intergenic | 35.0% | |
| TCAGGTACATTTGGTAAATC+GGG | + | chr3.3:18275105-18275124 | None:intergenic | 35.0% | |
| TTAGGTAACTCTGGTACTTT+AGG | + | chr3.3:18275687-18275706 | None:intergenic | 35.0% | |
| TTTGGAAATTCAGGAACCTT+AGG | + | chr3.3:18275720-18275739 | None:intergenic | 35.0% | |
| TTTGGAAGTTTAGGAACCTT+AGG | + | chr3.3:18275390-18275409 | None:intergenic | 35.0% | |
| TTTGTCAATTCAGGAACCTT+AGG | + | chr3.3:18275654-18275673 | None:intergenic | 35.0% | |
| ! | ACATTTGGTAAATCGGGTTT+TGG | + | chr3.3:18275099-18275118 | None:intergenic | 35.0% |
| ! | AGAGGTGGAAAATCAAGTTT+TGG | + | chr3.3:18274979-18274998 | None:intergenic | 35.0% |
| ! | TAGTTCAGGCTTTGGTAATT+CGG | + | chr3.3:18275157-18275176 | None:intergenic | 35.0% |
| ! | TCAGGTACTTTAGGAATTTC+AGG | + | chr3.3:18275276-18275295 | None:intergenic | 35.0% |
| ! | TCTGGTACTTTAGGAATCTT+GGG | + | chr3.3:18275678-18275697 | None:intergenic | 35.0% |
| ! | TTAGGTAACTCAGGGATTTT+AGG | + | chr3.3:18275489-18275508 | None:intergenic | 35.0% |
| ! | TTAGGTGATTCAGGGATTTT+AGG | + | chr3.3:18275219-18275238 | None:intergenic | 35.0% |
| ! | TTTGGCATTTCAGGTACATT+TGG | + | chr3.3:18275114-18275133 | None:intergenic | 35.0% |
| ! | TTTGGCATTTCAGGTACTTT+AGG | + | chr3.3:18275285-18275304 | None:intergenic | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+TGG | + | chr3.3:18275042-18275061 | None:intergenic | 35.0% |
| !! | AAATCTGGCTTTGGTAATTC+AGG | + | chr3.3:18275018-18275037 | None:intergenic | 35.0% |
| !! | AACTCAGGTTTTGTCAATTC+AGG | + | chr3.3:18275531-18275550 | None:intergenic | 35.0% |
| !! | AATTCTAGCTTAGGTAACTC+TGG | + | chr3.3:18275696-18275715 | None:intergenic | 35.0% |
| !! | ATCTTGGGTTTTGTCAATTC+AGG | + | chr3.3:18275663-18275682 | None:intergenic | 35.0% |
| !!! | AGCTCATGTTTTGGAAGTTT+AGG | + | chr3.3:18275399-18275418 | None:intergenic | 35.0% |
| !!! | ATTTCAGGTTTTGGCAATTC+AGG | + | chr3.3:18275261-18275280 | None:intergenic | 35.0% |
| AACTTAGGTAGTTCAGGCTT+TGG | + | chr3.3:18275303-18275322 | None:intergenic | 40.0% | |
| AATAGTAACACAAGGGTTGC+CGG | - | chr3.3:18274916-18274935 | MS.gene28252:CDS | 40.0% | |
| AATTGTGGCTTAGGTAACTC+AGG | + | chr3.3:18275498-18275517 | None:intergenic | 40.0% | |
| ACCTAAGCTAGAATTGCCTA+AGG | - | chr3.3:18275701-18275720 | MS.gene28252:CDS | 40.0% | |
| ATTGTGGCTTAGGTAACTCA+GGG | + | chr3.3:18275497-18275516 | None:intergenic | 40.0% | |
| CAATTCAGGAACGCTAATCT+TGG | + | chr3.3:18275181-18275200 | None:intergenic | 40.0% | |
| TTTGGCAATTCAGGAACCTT+AGG | + | chr3.3:18275252-18275271 | None:intergenic | 40.0% | |
| ! | ACATCAGGCTTTGGTAATTC+AGG | + | chr3.3:18275051-18275070 | None:intergenic | 40.0% |
| ! | ACCAAAGCCAGATTTTCCAA+AGG | - | chr3.3:18275023-18275042 | MS.gene28252:CDS | 40.0% |
| ! | ACCTTTGGAAAATCTGGCTT+TGG | + | chr3.3:18275027-18275046 | None:intergenic | 40.0% |
| ! | ACTTTAGGTAGCTCAGGTTT+TGG | + | chr3.3:18275738-18275757 | None:intergenic | 40.0% |
| ! | AGTTCAGGCTTTGGTAATTC+GGG | + | chr3.3:18275156-18275175 | None:intergenic | 40.0% |
| ! | CTCTGGTACTTTAGGAATCT+TGG | + | chr3.3:18275679-18275698 | None:intergenic | 40.0% |
| ! | CTGCTCTAGTTTAGGTAACT+CGG | + | chr3.3:18275631-18275650 | None:intergenic | 40.0% |
| ! | TCAGGGATTTTAGGCAATTC+AGG | + | chr3.3:18275480-18275499 | None:intergenic | 40.0% |
| ! | TCAGGTACCTTTGGAAAATC+TGG | + | chr3.3:18275033-18275052 | None:intergenic | 40.0% |
| ! | TGCTCTAGTTTAGGTAACTC+GGG | + | chr3.3:18275630-18275649 | None:intergenic | 40.0% |
| !! | ACCTTAGGCAATTCTAGCTT+AGG | + | chr3.3:18275705-18275724 | None:intergenic | 40.0% |
| !! | ACTTTAGGGAGTTTGGGTTT+TGG | + | chr3.3:18275606-18275625 | None:intergenic | 40.0% |
| !! | AGTTTGGGTTTTGGCATTTC+GGG | + | chr3.3:18275597-18275616 | None:intergenic | 40.0% |
| !! | ATTTTAGGTAGCTCGGGTTT+TGG | + | chr3.3:18275204-18275223 | None:intergenic | 40.0% |
| !! | GAGTTTGGGTTTTGGCATTT+CGG | + | chr3.3:18275598-18275617 | None:intergenic | 40.0% |
| !! | GGTGGAAAATCAAGTTTTGG+AGG | + | chr3.3:18274976-18274995 | None:intergenic | 40.0% |
| !! | GTTTTAGGCAATTGTGGCTT+AGG | + | chr3.3:18275507-18275526 | None:intergenic | 40.0% |
| !! | TTCAGGGATTTTAGGTAGCT+CGG | + | chr3.3:18275211-18275230 | None:intergenic | 40.0% |
| !! | TTTGGAGTTTCTGGGACTTT+AGG | + | chr3.3:18275753-18275772 | None:intergenic | 40.0% |
| !!! | AAAGATGGTTTTGGTAGAGG+TGG | + | chr3.3:18274994-18275013 | None:intergenic | 40.0% |
| !!! | AAATCAAGTTTTGGAGGCTG+AGG | + | chr3.3:18274970-18274989 | None:intergenic | 40.0% |
| !!! | AGCTCAGGTTTTGGAAATTC+AGG | + | chr3.3:18275729-18275748 | None:intergenic | 40.0% |
| !!! | GAACGACTTTTGGAGTTTCT+GGG | + | chr3.3:18275761-18275780 | None:intergenic | 40.0% |
| !!! | GCTTTAGGAAGCTCATGTTT+TGG | + | chr3.3:18275408-18275427 | None:intergenic | 40.0% |
| !!! | GGTAAAGATGGTTTTGGTAG+AGG | + | chr3.3:18274997-18275016 | None:intergenic | 40.0% |
| !!! | TCAGGAGTTTTAGGCAATTG+TGG | + | chr3.3:18275513-18275532 | None:intergenic | 40.0% |
| ACATCCGACTTAGGGAATTC+AGG | + | chr3.3:18275366-18275385 | None:intergenic | 45.0% | |
| ACCAAAGCCTGATGTTCCTA+AGG | - | chr3.3:18275056-18275075 | MS.gene28252:CDS | 45.0% | |
| ACCTAAACTAGAGCAGCCTA+AGG | - | chr3.3:18275635-18275654 | MS.gene28252:CDS | 45.0% | |
| ACCTTAGGAACATCAGGCTT+TGG | + | chr3.3:18275060-18275079 | None:intergenic | 45.0% | |
| ACCTTAGGAACATCCGACTT+AGG | + | chr3.3:18275375-18275394 | None:intergenic | 45.0% | |
| ACGCTAATCTTGGGTAGTTC+AGG | + | chr3.3:18275171-18275190 | None:intergenic | 45.0% | |
| ATAGTAACACAAGGGTTGCC+GGG | - | chr3.3:18274917-18274936 | MS.gene28252:CDS | 45.0% | |
| ATCCGACTTAGGGAATTCAG+GGG | + | chr3.3:18275364-18275383 | None:intergenic | 45.0% | |
| ATCCTAGGCAACTCAGGTTT+AGG | + | chr3.3:18275573-18275592 | None:intergenic | 45.0% | |
| ATCTTGGGTAGTTCAGGCTT+TGG | + | chr3.3:18275165-18275184 | None:intergenic | 45.0% | |
| CATCCGACTTAGGGAATTCA+GGG | + | chr3.3:18275365-18275384 | None:intergenic | 45.0% | |
| CCTTAGGAACATCCGACTTA+GGG | + | chr3.3:18275374-18275393 | None:intergenic | 45.0% | |
| TACCTAAACCTGAGTTGCCT+AGG | - | chr3.3:18275568-18275587 | MS.gene28252:CDS | 45.0% | |
| TAGGTAACTCGGGGACTTTA+GGG | + | chr3.3:18275620-18275639 | None:intergenic | 45.0% | |
| TCAGAAACCTTAGATAGCCC+TGG | + | chr3.3:18275447-18275466 | None:intergenic | 45.0% | |
| TCAGGAACTTTAGGCAACTC+AGG | + | chr3.3:18275546-18275565 | None:intergenic | 45.0% | |
| TTAGGGAATTCAGGGGCTTT+AGG | + | chr3.3:18275357-18275376 | None:intergenic | 45.0% | |
| TTAGGTAACTCGGGGACTTT+AGG | + | chr3.3:18275621-18275640 | None:intergenic | 45.0% | |
| TTTGGCATTTCGGGAATCCT+AGG | + | chr3.3:18275588-18275607 | None:intergenic | 45.0% | |
| ! | ACCTTAGGCTGCTCTAGTTT+AGG | + | chr3.3:18275639-18275658 | None:intergenic | 45.0% |
| ! | AGTTCAGGCTTTGGCATTTC+AGG | + | chr3.3:18275294-18275313 | None:intergenic | 45.0% |
| ! | GCTCTAGCTTAGGTGATTCA+GGG | + | chr3.3:18275227-18275246 | None:intergenic | 45.0% |
| ! | GCTCTAGTTTAGGTAACTCG+GGG | + | chr3.3:18275629-18275648 | None:intergenic | 45.0% |
| ! | TGCTCTAGCTTAGGTGATTC+AGG | + | chr3.3:18275228-18275247 | None:intergenic | 45.0% |
| ! | TTTGGTAATTCGGGCCCTTT+AGG | + | chr3.3:18275147-18275166 | None:intergenic | 45.0% |
| !! | AAATCGGGTTTTGGCAACTC+AGG | + | chr3.3:18275090-18275109 | None:intergenic | 45.0% |
| !! | GCTTTAGGAAGCTCGAGTTT+CGG | + | chr3.3:18275342-18275361 | None:intergenic | 45.0% |
| !! | TCAGGGATTTTAGGTAGCTC+GGG | + | chr3.3:18275210-18275229 | None:intergenic | 45.0% |
| !!! | GGAACGACTTTTGGAGTTTC+TGG | + | chr3.3:18275762-18275781 | None:intergenic | 45.0% |
| ACCTAAGCTAGAGCAGCCTA+AGG | - | chr3.3:18275233-18275252 | MS.gene28252:CDS | 50.0% | |
| ACCTGAACCAGGGCTATCTA+AGG | - | chr3.3:18275437-18275456 | MS.gene28252:CDS | 50.0% | |
| ACCTTAGATAGCCCTGGTTC+AGG | + | chr3.3:18275441-18275460 | None:intergenic | 50.0% | |
| AGCCCCTGAATTCCCTAAGT+CGG | - | chr3.3:18275359-18275378 | MS.gene28252:CDS | 50.0% | |
| CCCTAAGTCGGATGTTCCTA+AGG | - | chr3.3:18275371-18275390 | MS.gene28252:CDS | 50.0% | |
| TAGTAACACAAGGGTTGCCG+GGG | - | chr3.3:18274918-18274937 | MS.gene28252:CDS | 50.0% | |
| ! | ACCTTAGGCTGCTCTAGCTT+AGG | + | chr3.3:18275237-18275256 | None:intergenic | 50.0% |
| ! | GTGGTGGTTGGAACGACTTT+TGG | + | chr3.3:18275771-18275790 | None:intergenic | 50.0% |
| ! | TCGGGGACTTTAGGGAGTTT+GGG | + | chr3.3:18275612-18275631 | None:intergenic | 50.0% |
| ! | TCTGGGACTTTAGGTAGCTC+AGG | + | chr3.3:18275744-18275763 | None:intergenic | 50.0% |
| !! | AGCTCGGGTTTTGGCAATTC+AGG | + | chr3.3:18275195-18275214 | None:intergenic | 50.0% |
| AGCTCGAGTTTCGGCAGTTC+AGG | + | chr3.3:18275333-18275352 | None:intergenic | 55.0% | |
| TCAGGTACCTCAGGGGCTTT+AGG | + | chr3.3:18275423-18275442 | None:intergenic | 55.0% | |
| TCGGGAATCCTAGGCAACTC+AGG | + | chr3.3:18275579-18275598 | None:intergenic | 55.0% | |
| TGAGCTTCCTAAAGCCCCTG+AGG | - | chr3.3:18275413-18275432 | MS.gene28252:CDS | 55.0% | |
| ! | CTCGGGGACTTTAGGGAGTT+TGG | + | chr3.3:18275613-18275632 | None:intergenic | 55.0% |
| ! | CTCTAGAAGATTGCGTGCCC+CGG | + | chr3.3:18274938-18274957 | None:intergenic | 55.0% |
| AGCCCTGGTTCAGGTACCTC+AGG | + | chr3.3:18275432-18275451 | None:intergenic | 60.0% | |
| CCCTGGTTCAGGTACCTCAG+GGG | + | chr3.3:18275430-18275449 | None:intergenic | 60.0% | |
| GCCCTGGTTCAGGTACCTCA+GGG | + | chr3.3:18275431-18275450 | None:intergenic | 60.0% | |
| ! | CCCCTGAGGTACCTGAACCA+GGG | - | chr3.3:18275427-18275446 | MS.gene28252:CDS | 60.0% |
| ! | GCCCCTGAGGTACCTGAACC+AGG | - | chr3.3:18275426-18275445 | MS.gene28252:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 18274850 | 18275797 | 18274850 | ID=MS.gene28252 |
| chr3.3 | mRNA | 18274850 | 18275797 | 18274850 | ID=MS.gene28252.t1;Parent=MS.gene28252 |
| chr3.3 | exon | 18274850 | 18275797 | 18274850 | ID=MS.gene28252.t1.exon1;Parent=MS.gene28252.t1 |
| chr3.3 | CDS | 18274850 | 18275797 | 18274850 | ID=cds.MS.gene28252.t1;Parent=MS.gene28252.t1 |
| Gene Sequence |
| Protein sequence |
