Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28779.t1 | XP_003625933.2 | 99.1 | 635 | 1 | 1 | 1 | 630 | 1 | 635 | 0.00E+00 | 1223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28779.t1 | A2XL32 | 77.9 | 592 | 126 | 1 | 2 | 588 | 1 | 592 | 1.3e-263 | 910.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28779.t1 | G7KSQ0 | 99.1 | 635 | 1 | 1 | 1 | 630 | 1 | 635 | 0.0e+00 | 1223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57306 | MS.gene28779 | PPI |
| MS.gene045131 | MS.gene28779 | PPI |
| MS.gene28779 | MS.gene030824 | PPI |
| MS.gene052190 | MS.gene28779 | PPI |
| MS.gene061793 | MS.gene28779 | PPI |
| MS.gene49566 | MS.gene28779 | PPI |
| MS.gene28779 | MS.gene91938 | PPI |
| MS.gene28779 | MS.gene28063 | PPI |
| MS.gene75490 | MS.gene28779 | PPI |
| MS.gene91939 | MS.gene28779 | PPI |
| MS.gene28779 | MS.gene032807 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28779.t1 | MTR_7g109150 | 99.055 | 635 | 1 | 1 | 1 | 630 | 1 | 635 | 0.0 | 1295 |
| MS.gene28779.t1 | MTR_4g031150 | 72.392 | 623 | 167 | 1 | 1 | 618 | 50 | 672 | 0.0 | 927 |
| MS.gene28779.t1 | MTR_1g073840 | 41.596 | 589 | 321 | 11 | 5 | 581 | 29 | 606 | 1.32e-134 | 412 |
| MS.gene28779.t1 | MTR_1g044210 | 39.336 | 572 | 323 | 12 | 5 | 562 | 28 | 589 | 1.16e-121 | 379 |
| MS.gene28779.t1 | MTR_7g116330 | 37.242 | 631 | 325 | 16 | 5 | 593 | 34 | 635 | 6.64e-116 | 363 |
| MS.gene28779.t1 | MTR_1g079790 | 37.304 | 638 | 358 | 16 | 3 | 618 | 26 | 643 | 3.27e-114 | 359 |
| MS.gene28779.t1 | MTR_1g079790 | 37.762 | 572 | 327 | 12 | 3 | 556 | 26 | 586 | 3.24e-109 | 342 |
| MS.gene28779.t1 | MTR_5g022470 | 33.721 | 258 | 145 | 4 | 329 | 562 | 499 | 754 | 1.13e-35 | 144 |
| MS.gene28779.t1 | MTR_5g022470 | 33.721 | 258 | 145 | 4 | 329 | 562 | 499 | 754 | 1.24e-35 | 144 |
| MS.gene28779.t1 | MTR_8g075340 | 32.031 | 256 | 152 | 3 | 329 | 562 | 461 | 716 | 6.10e-33 | 136 |
| MS.gene28779.t1 | MTR_3g105590 | 33.562 | 292 | 147 | 9 | 344 | 591 | 375 | 663 | 7.79e-33 | 135 |
| MS.gene28779.t1 | MTR_8g080770 | 30.357 | 280 | 162 | 4 | 330 | 577 | 274 | 552 | 2.44e-32 | 134 |
| MS.gene28779.t1 | MTR_8g080770 | 30.357 | 280 | 162 | 4 | 330 | 577 | 383 | 661 | 2.66e-32 | 134 |
| MS.gene28779.t1 | MTR_3g085130 | 28.333 | 300 | 175 | 5 | 330 | 593 | 438 | 733 | 1.00e-31 | 132 |
| MS.gene28779.t1 | MTR_3g085130 | 28.716 | 296 | 173 | 5 | 330 | 588 | 228 | 522 | 1.25e-31 | 131 |
| MS.gene28779.t1 | MTR_5g097410 | 30.389 | 283 | 158 | 5 | 333 | 577 | 611 | 892 | 6.57e-29 | 123 |
| MS.gene28779.t1 | MTR_8g106150 | 30.820 | 305 | 156 | 6 | 333 | 583 | 134 | 437 | 8.55e-29 | 122 |
| MS.gene28779.t1 | MTR_8g106150 | 30.820 | 305 | 156 | 6 | 333 | 583 | 377 | 680 | 1.04e-28 | 122 |
| MS.gene28779.t1 | MTR_1g013360 | 37.226 | 137 | 83 | 2 | 343 | 478 | 380 | 514 | 4.07e-20 | 95.5 |
| MS.gene28779.t1 | MTR_1g013360 | 38.393 | 112 | 64 | 3 | 479 | 587 | 585 | 694 | 1.19e-11 | 68.6 |
| MS.gene28779.t1 | MTR_1g087140 | 28.939 | 311 | 170 | 12 | 319 | 586 | 373 | 675 | 8.87e-19 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28779.t1 | AT2G40940 | 76.294 | 599 | 137 | 1 | 2 | 595 | 1 | 599 | 0.0 | 922 |
| MS.gene28779.t1 | AT1G66340 | 70.579 | 622 | 174 | 2 | 2 | 618 | 1 | 618 | 0.0 | 886 |
| MS.gene28779.t1 | AT3G23150 | 39.688 | 577 | 306 | 15 | 5 | 557 | 32 | 590 | 1.00e-114 | 356 |
| MS.gene28779.t1 | AT3G23150 | 39.863 | 582 | 308 | 15 | 5 | 562 | 32 | 595 | 5.26e-114 | 359 |
| MS.gene28779.t1 | AT3G04580 | 35.692 | 636 | 377 | 14 | 4 | 618 | 26 | 650 | 4.40e-108 | 343 |
| MS.gene28779.t1 | AT3G04580 | 35.692 | 636 | 377 | 14 | 4 | 618 | 26 | 650 | 4.40e-108 | 343 |
| MS.gene28779.t1 | AT1G04310 | 35.992 | 514 | 299 | 11 | 5 | 492 | 34 | 543 | 2.44e-86 | 283 |
| MS.gene28779.t1 | AT1G04310 | 35.992 | 514 | 299 | 11 | 5 | 492 | 34 | 543 | 2.44e-86 | 283 |
| MS.gene28779.t1 | AT5G10720 | 32.500 | 320 | 186 | 8 | 318 | 614 | 339 | 651 | 7.66e-38 | 150 |
| MS.gene28779.t1 | AT2G17820 | 32.246 | 276 | 161 | 5 | 309 | 562 | 472 | 743 | 3.79e-35 | 142 |
| MS.gene28779.t1 | AT1G27320 | 30.421 | 309 | 184 | 4 | 299 | 577 | 410 | 717 | 6.10e-35 | 142 |
| MS.gene28779.t1 | AT5G35750 | 30.405 | 296 | 165 | 7 | 330 | 588 | 578 | 869 | 4.36e-31 | 130 |
| MS.gene28779.t1 | AT2G01830 | 29.545 | 308 | 165 | 5 | 333 | 592 | 466 | 769 | 3.15e-30 | 127 |
| MS.gene28779.t1 | AT2G01830 | 29.545 | 308 | 165 | 5 | 333 | 592 | 455 | 758 | 3.26e-30 | 127 |
| MS.gene28779.t1 | AT2G01830 | 29.545 | 308 | 165 | 5 | 333 | 592 | 443 | 746 | 3.29e-30 | 127 |
| MS.gene28779.t1 | AT2G01830 | 29.545 | 308 | 165 | 5 | 333 | 592 | 443 | 746 | 3.29e-30 | 127 |
| MS.gene28779.t1 | AT2G01830 | 29.545 | 308 | 165 | 5 | 333 | 592 | 443 | 746 | 3.29e-30 | 127 |
| MS.gene28779.t1 | AT2G01830 | 29.545 | 308 | 165 | 5 | 333 | 592 | 443 | 746 | 3.29e-30 | 127 |
| MS.gene28779.t1 | AT2G47430 | 27.491 | 291 | 167 | 10 | 329 | 581 | 385 | 669 | 1.36e-16 | 84.7 |
| MS.gene28779.t1 | AT4G16250 | 23.577 | 246 | 161 | 8 | 321 | 562 | 914 | 1136 | 6.37e-11 | 66.2 |
Find 144 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCACATGCTGCTATTT+TGG | 0.127774 | 7.4:+6235366 | MS.gene28779:CDS |
| GCTCAGGCCAATCATTAATT+TGG | 0.179813 | 7.4:-6234187 | None:intergenic |
| TTTGTGCAGGTTAAGGATTC+TGG | 0.190806 | 7.4:+6236315 | MS.gene28779:intron |
| AATCAACCTTCATGGTGTTT+TGG | 0.215357 | 7.4:+6235696 | MS.gene28779:CDS |
| CTGCTTTCTTTCCATATAGA+TGG | 0.223591 | 7.4:+6233544 | MS.gene28779:CDS |
| GTGGAGTTGGGTAGGACTTT+AGG | 0.238818 | 7.4:+6233909 | MS.gene28779:CDS |
| GATGGGTTCTTATGCAGTTT+GGG | 0.252158 | 7.4:+6233562 | MS.gene28779:CDS |
| AGCATTGTCATCACTTCTTT+TGG | 0.253771 | 7.4:+6235537 | MS.gene28779:CDS |
| CGCCAATCCTGTAAGGATTC+TGG | 0.273695 | 7.4:-6236005 | None:intergenic |
| TTGGACTAGCTATTTGTAAA+AGG | 0.274567 | 7.4:+6236430 | MS.gene28779:CDS |
| GCTCTTCCGCCTTGTTCTTA+AGG | 0.299367 | 7.4:-6233770 | None:intergenic |
| AGATGGGTTCTTATGCAGTT+TGG | 0.302430 | 7.4:+6233561 | MS.gene28779:CDS |
| ACAAGGCGGAAGAGCTTGAT+AGG | 0.308682 | 7.4:+6233778 | MS.gene28779:CDS |
| TGCAAAACCAGAATCCTTAC+AGG | 0.315260 | 7.4:+6235998 | MS.gene28779:CDS |
| TTAAAGTATGAGAAAGTTGT+AGG | 0.315493 | 7.4:-6233977 | None:intergenic |
| TGCATAAGAACCCATCTATA+TGG | 0.316824 | 7.4:-6233555 | None:intergenic |
| CAACATTCTCACATGTCTTC+CGG | 0.319637 | 7.4:-6233832 | None:intergenic |
| ATCTCATGGGTGGGCACATA+TGG | 0.329280 | 7.4:+6236595 | MS.gene28779:CDS |
| TAATGATTGGCCTGAGCTTT+CGG | 0.339005 | 7.4:+6234193 | MS.gene28779:CDS |
| CACCTGAAGTTGTTGCGGTT+CGG | 0.344532 | 7.4:+6234138 | MS.gene28779:CDS |
| CAAATTTCCAAATTAATGAT+TGG | 0.349017 | 7.4:+6234180 | MS.gene28779:CDS |
| TCTAGCAGTGGTTCAGGTCT+TGG | 0.350863 | 7.4:+6236411 | MS.gene28779:CDS |
| ATTGAAGAGTAGTAATGTTT+TGG | 0.359573 | 7.4:+6235603 | MS.gene28779:CDS |
| CTGAAGACTTCATTGACAAT+AGG | 0.366052 | 7.4:-6234041 | None:intergenic |
| GAATGTTGACTCATGAAATT+AGG | 0.375510 | 7.4:+6233847 | MS.gene28779:CDS |
| GAGAGCGAGGGTCACGATAA+AGG | 0.377013 | 7.4:+6236621 | MS.gene28779:CDS |
| ACCTGAAGTTGTTGCGGTTC+GGG | 0.378789 | 7.4:+6234139 | MS.gene28779:CDS |
| CTCTCGCCGAGCTAAATCTA+AGG | 0.393829 | 7.4:-6235434 | None:intergenic |
| AGAAGTTCATCTGGAGGATA+AGG | 0.403750 | 7.4:-6233435 | None:intergenic |
| GAAGTTCATCTGGAGGATAA+GGG | 0.403757 | 7.4:-6233434 | None:intergenic |
| ATGGCATGAGTAGGTAGATC+AGG | 0.413426 | 7.4:-6235879 | None:intergenic |
| GTTCGATCTAGCAGTGGTTC+AGG | 0.425531 | 7.4:+6236405 | MS.gene28779:CDS |
| CTCCACTTCCACTATATGCT+TGG | 0.434484 | 7.4:-6236722 | None:intergenic |
| AAATTAGGAGCACTCTTGAT+AGG | 0.435699 | 7.4:+6233862 | MS.gene28779:CDS |
| GGGGCAAGAATTAAAGTAAT+GGG | 0.436802 | 7.4:-6235858 | None:intergenic |
| TATTTGACAAGAAGTTCATC+TGG | 0.438266 | 7.4:-6233444 | None:intergenic |
| GAGTTGATCCCGGGCTCGCA+TGG | 0.439303 | 7.4:-6235395 | None:intergenic |
| AGCTCGGCGAGAGGCTGAAA+TGG | 0.447274 | 7.4:+6235444 | MS.gene28779:CDS |
| AGGTTCAAACCACTTCTTGA+TGG | 0.447911 | 7.4:-6233957 | None:intergenic |
| GCTACATTTGTAGTCAAACT+TGG | 0.452125 | 7.4:+6236651 | MS.gene28779:CDS |
| GGGTAGGACTTTAGGATTGG+AGG | 0.452722 | 7.4:+6233917 | MS.gene28779:CDS |
| ACCCGAACCGCAACAACTTC+AGG | 0.453206 | 7.4:-6234140 | None:intergenic |
| GGCCAAGCATATAGTGGAAG+TGG | 0.455936 | 7.4:+6236720 | MS.gene28779:CDS |
| ATTCAGATTTGTAAATCTCA+TGG | 0.457675 | 7.4:+6236581 | MS.gene28779:intron |
| ATTCTTACTCAGGAAGAAAC+CGG | 0.461381 | 7.4:+6233813 | MS.gene28779:CDS |
| CCAAAATAGCAGCATGTGAA+AGG | 0.461533 | 7.4:-6235366 | None:intergenic |
| TTGTTCCATGAGTTGATCCC+GGG | 0.464658 | 7.4:-6235404 | None:intergenic |
| AGCAGAGGCCAAGCATATAG+TGG | 0.467264 | 7.4:+6236714 | MS.gene28779:CDS |
| TTGACAATAGGAAGGTTTGT+TGG | 0.470136 | 7.4:-6234029 | None:intergenic |
| AAAGACCACTCTTGTGGAGT+TGG | 0.471472 | 7.4:+6233896 | MS.gene28779:CDS |
| TGGTAGCCTTGAATTAGAAA+TGG | 0.472836 | 7.4:+6235669 | MS.gene28779:CDS |
| GTAGTCAAACTTGGGATTTG+TGG | 0.473180 | 7.4:+6236660 | MS.gene28779:CDS |
| TGCTTTCTTTCCATATAGAT+GGG | 0.474314 | 7.4:+6233545 | MS.gene28779:CDS |
| TTTGTTCCATGAGTTGATCC+CGG | 0.480126 | 7.4:-6235405 | None:intergenic |
| AAGACCACTCTTGTGGAGTT+GGG | 0.480183 | 7.4:+6233897 | MS.gene28779:CDS |
| ACAAAATAAATGAGTTCGAC+AGG | 0.487975 | 7.4:-6233513 | None:intergenic |
| GTTGGGTAGGACTTTAGGAT+TGG | 0.493614 | 7.4:+6233914 | MS.gene28779:CDS |
| TGGAGGAGTCCATGCGAGCC+CGG | 0.494071 | 7.4:+6235386 | MS.gene28779:CDS |
| TGTGGTATACGCATAGCTCT+CGG | 0.503245 | 7.4:-6234068 | None:intergenic |
| TCTATCATAACCCTCTGCTC+TGG | 0.509698 | 7.4:-6235574 | None:intergenic |
| GAACCACTGCTAGATCGAAC+AGG | 0.510532 | 7.4:-6236402 | None:intergenic |
| GGAGGAGTCCATGCGAGCCC+GGG | 0.516805 | 7.4:+6235387 | MS.gene28779:CDS |
| GTTCTTAAGGAACAACTCAC+GGG | 0.520997 | 7.4:-6233757 | None:intergenic |
| AACCAGAATCCTTACAGGAT+TGG | 0.521860 | 7.4:+6236003 | MS.gene28779:CDS |
| TTCAGATTTGTAAATCTCAT+GGG | 0.524035 | 7.4:+6236582 | MS.gene28779:intron |
| TCTGCTTGCAGCTTGATGAT+CGG | 0.525516 | 7.4:-6236697 | None:intergenic |
| AGGAGGTCGCCAATCCTGTA+AGG | 0.525729 | 7.4:-6236012 | None:intergenic |
| AAATGACCATCACTTGATGC+TGG | 0.529879 | 7.4:-6236044 | None:intergenic |
| GGAAGAGCTTGATAGGGAGA+TGG | 0.530026 | 7.4:+6233785 | MS.gene28779:CDS |
| CTACATTTGTAGTCAAACTT+GGG | 0.530312 | 7.4:+6236652 | MS.gene28779:CDS |
| GTGGTATACGCATAGCTCTC+GGG | 0.531017 | 7.4:-6234067 | None:intergenic |
| TGTTCTTAAGGAACAACTCA+CGG | 0.533686 | 7.4:-6233758 | None:intergenic |
| CTGAACTGACTCCAGAGCAG+AGG | 0.535510 | 7.4:+6235563 | MS.gene28779:CDS |
| GATGGGACTTATTCTTACTC+AGG | 0.538781 | 7.4:+6233803 | MS.gene28779:CDS |
| ATGGGTTCTTATGCAGTTTG+GGG | 0.539955 | 7.4:+6233563 | MS.gene28779:CDS |
| TTAACTTATCATGTACAAGT+TGG | 0.540061 | 7.4:+6233996 | MS.gene28779:CDS |
| GATCTGTCCCGACTGGAAGA+TGG | 0.542916 | 7.4:+6235649 | MS.gene28779:CDS |
| TTACTCAATGATGACGACAT+AGG | 0.543430 | 7.4:+6236765 | MS.gene28779:CDS |
| AGGGGCAAGAATTAAAGTAA+TGG | 0.544261 | 7.4:-6235859 | None:intergenic |
| ACTCTGAGACTGAGTAAACT+TGG | 0.544636 | 7.4:-6236376 | None:intergenic |
| TCATTTCTATATACGAGTCC+AGG | 0.548157 | 7.4:+6236061 | MS.gene28779:CDS |
| GAAGAGCTTGATAGGGAGAT+GGG | 0.548570 | 7.4:+6233786 | MS.gene28779:CDS |
| CAATGCTGTCAAATATACTA+AGG | 0.548729 | 7.4:+6235947 | MS.gene28779:CDS |
| CATGGGTGGGCACATATGGA+TGG | 0.549664 | 7.4:+6236599 | MS.gene28779:CDS |
| GCGAGCCCGGGATCAACTCA+TGG | 0.550447 | 7.4:+6235399 | MS.gene28779:CDS |
| AAGGCTACCATCTTCCAGTC+GGG | 0.554665 | 7.4:-6235656 | None:intergenic |
| CAAAATAGCAGCATGTGAAA+GGG | 0.558668 | 7.4:-6235365 | None:intergenic |
| CACTTTCTAGCACTATCAGT+AGG | 0.560837 | 7.4:-6234248 | None:intergenic |
| CTTGATGCTGGATAAAACTC+AGG | 0.561674 | 7.4:-6236032 | None:intergenic |
| CAGGTTAAGGATTCTGGATG+TGG | 0.561926 | 7.4:+6236321 | MS.gene28779:intron |
| CTTGCAGCTTGATGATCGGA+TGG | 0.567335 | 7.4:-6236693 | None:intergenic |
| CAAGGCGGAAGAGCTTGATA+GGG | 0.569408 | 7.4:+6233779 | MS.gene28779:CDS |
| CATCGACAAGCTCCAACTCA+TGG | 0.570916 | 7.4:-6234277 | None:intergenic |
| TGGCATGAGTAGGTAGATCA+GGG | 0.573826 | 7.4:-6235878 | None:intergenic |
| AGATTTGTAAATCTCATGGG+TGG | 0.574861 | 7.4:+6236585 | MS.gene28779:intron |
| ACGTTGCCTTAGATTTAGCT+CGG | 0.574999 | 7.4:+6235428 | MS.gene28779:CDS |
| TGCTGTCAAATATACTAAGG+AGG | 0.577420 | 7.4:+6235950 | MS.gene28779:CDS |
| GCTGTCAAATATACTAAGGA+GGG | 0.577474 | 7.4:+6235951 | MS.gene28779:CDS |
| TATTCTAAAGACCACTCTTG+TGG | 0.580698 | 7.4:+6233890 | MS.gene28779:CDS |
| GTAAACTTGGTAAAGAGATG+TGG | 0.583173 | 7.4:-6236363 | None:intergenic |
| CTACTGATAGTGCTAGAAAG+TGG | 0.585604 | 7.4:+6234249 | MS.gene28779:CDS |
| GCTAGGATAAGACCTCTTGT+CGG | 0.586111 | 7.4:+6234104 | MS.gene28779:CDS |
| TGTTCTAGATCTGTCCCGAC+TGG | 0.586169 | 7.4:+6235642 | MS.gene28779:CDS |
| CACACACTTGTCCACTTGCT+AGG | 0.588144 | 7.4:+6234087 | MS.gene28779:CDS |
| TTTCATGATTCATGACTGCA+AGG | 0.589191 | 7.4:-6235489 | None:intergenic |
| CCACTCTTGTGGAGTTGGGT+AGG | 0.594476 | 7.4:+6233901 | MS.gene28779:CDS |
| GATTTGTAAATCTCATGGGT+GGG | 0.596709 | 7.4:+6236586 | MS.gene28779:intron |
| ACTTTCTAGCACTATCAGTA+GGG | 0.597780 | 7.4:-6234247 | None:intergenic |
| AGACTTCATTGACAATAGGA+AGG | 0.597850 | 7.4:-6234037 | None:intergenic |
| GTAAGTGCTTAAATCTAGCA+AGG | 0.598885 | 7.4:-6236746 | None:intergenic |
| CAAGGCTACCATCTTCCAGT+CGG | 0.599285 | 7.4:-6235657 | None:intergenic |
| AAGTTCATCTGGAGGATAAG+GGG | 0.601986 | 7.4:-6233433 | None:intergenic |
| TGAACTGACTCCAGAGCAGA+GGG | 0.605152 | 7.4:+6235564 | MS.gene28779:CDS |
| TGAGTTGTTCCTTAAGAACA+AGG | 0.610418 | 7.4:+6233761 | MS.gene28779:CDS |
| GCACATATGGATGGAGAGCG+AGG | 0.610844 | 7.4:+6236608 | MS.gene28779:CDS |
| GGCACATATCTTCCGACAAG+AGG | 0.613814 | 7.4:-6234116 | None:intergenic |
| AAGAGATGTGGAATATCTTG+TGG | 0.615014 | 7.4:-6236351 | None:intergenic |
| AGAGGTCTTATCCTAGCAAG+TGG | 0.615685 | 7.4:-6234098 | None:intergenic |
| TCATCACCGATGGCATGAGT+AGG | 0.616501 | 7.4:-6235888 | None:intergenic |
| CTTAGATTTAGCTCGGCGAG+AGG | 0.619358 | 7.4:+6235435 | MS.gene28779:CDS |
| AGCACACGACACTTTAGCGA+TGG | 0.621416 | 7.4:-6233670 | None:intergenic |
| AAAGTGGCGAGACCATGAGT+TGG | 0.625466 | 7.4:+6234265 | MS.gene28779:CDS |
| AAATTTGACAAATGTAGAAG+CGG | 0.631499 | 7.4:-6234164 | None:intergenic |
| GATCATCAAGCTGCAAGCAG+AGG | 0.631663 | 7.4:+6236699 | MS.gene28779:CDS |
| CGCAAGTGCGATTAGAACGT+CGG | 0.632134 | 7.4:-6233478 | None:intergenic |
| CAAGCATATAGTGGAAGTGG+AGG | 0.635632 | 7.4:+6236723 | MS.gene28779:CDS |
| ATGCCATCGGTGATGAAAAG+CGG | 0.635694 | 7.4:+6235895 | MS.gene28779:CDS |
| TGTGCCACCTGAAGTTGTTG+CGG | 0.636371 | 7.4:+6234133 | MS.gene28779:CDS |
| TTGACAAGAAGTTCATCTGG+AGG | 0.637150 | 7.4:-6233441 | None:intergenic |
| ATGAACAAGCATAAGTGCAG+TGG | 0.643228 | 7.4:-6233706 | None:intergenic |
| CCTACCCAACTCCACAAGAG+TGG | 0.646184 | 7.4:-6233901 | None:intergenic |
| GATCTACCTACTCATGCCAT+CGG | 0.647848 | 7.4:+6235882 | MS.gene28779:CDS |
| CCTCTCCCAAAACACCATGA+AGG | 0.651300 | 7.4:-6235702 | None:intergenic |
| CACATATGGATGGAGAGCGA+GGG | 0.654671 | 7.4:+6236609 | MS.gene28779:CDS |
| GGACCTGTTCGATCTAGCAG+TGG | 0.657911 | 7.4:+6236399 | MS.gene28779:CDS |
| CGAACCGCAACAACTTCAGG+TGG | 0.664993 | 7.4:-6234137 | None:intergenic |
| CTGTGGATGCCATCAAGAAG+TGG | 0.665478 | 7.4:+6233948 | MS.gene28779:CDS |
| GATGCTGGATAAAACTCAGG+AGG | 0.685050 | 7.4:-6236029 | None:intergenic |
| CTAGCAAGTGGACAAGTGTG+TGG | 0.685475 | 7.4:-6234086 | None:intergenic |
| AATGCTATAATTGCATGCAT+CGG | 0.690508 | 7.4:-6235520 | None:intergenic |
| GGCATGAGTAGGTAGATCAG+GGG | 0.696928 | 7.4:-6235877 | None:intergenic |
| AAGTTTACTCAGTCTCAGAG+TGG | 0.708425 | 7.4:+6236378 | MS.gene28779:CDS |
| GTTGTTCCTTAAGAACAAGG+CGG | 0.762407 | 7.4:+6233764 | MS.gene28779:CDS |
| GATTGGAGGAATGTGCACTG+TGG | 0.783064 | 7.4:+6233931 | MS.gene28779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATTTCTTTTATTTTAT+TGG | + | chr7.4:6234319-6234338 | MS.gene28779:intron | 10.0% |
| !! | AATAGTTGAAAATTAGGAAA+TGG | + | chr7.4:6234503-6234522 | MS.gene28779:intron | 20.0% |
| !! | AATTCAATCACATTAACATA+TGG | - | chr7.4:6236123-6236142 | None:intergenic | 20.0% |
| !! | AATTTCAAACACAGTTAATA+TGG | - | chr7.4:6235169-6235188 | None:intergenic | 20.0% |
| !! | CAAATTTCCAAATTAATGAT+TGG | + | chr7.4:6234180-6234199 | MS.gene28779:CDS | 20.0% |
| !! | GTATTAAATACAAATATCAC+AGG | - | chr7.4:6234711-6234730 | None:intergenic | 20.0% |
| !!! | AAACTTTTCATTCAATTGTA+TGG | + | chr7.4:6235107-6235126 | MS.gene28779:intron | 20.0% |
| !!! | AAAGTTTCAGGTATTTAATT+TGG | - | chr7.4:6235094-6235113 | None:intergenic | 20.0% |
| ! | AAATAACTATAAAGCCCAAA+TGG | - | chr7.4:6234543-6234562 | None:intergenic | 25.0% |
| ! | AAATTTACAACAAATGTGTG+TGG | + | chr7.4:6235009-6235028 | MS.gene28779:intron | 25.0% |
| ! | AAATTTGACAAATGTAGAAG+CGG | - | chr7.4:6234167-6234186 | None:intergenic | 25.0% |
| ! | AAGTCGATAACATAATGAAA+AGG | - | chr7.4:6236223-6236242 | None:intergenic | 25.0% |
| ! | AATAGAAAACAACGGAAATA+CGG | - | chr7.4:6234376-6234395 | None:intergenic | 25.0% |
| ! | AATTTACAACAAATGTGTGT+GGG | + | chr7.4:6235010-6235029 | MS.gene28779:intron | 25.0% |
| ! | ACAATTGAATGAAAAGTTTC+AGG | - | chr7.4:6235106-6235125 | None:intergenic | 25.0% |
| ! | ACTAAATTTAAGAACGAGAT+TGG | + | chr7.4:6234897-6234916 | MS.gene28779:intron | 25.0% |
| ! | AGAAAAGGAATAGAAAACAA+CGG | - | chr7.4:6234384-6234403 | None:intergenic | 25.0% |
| ! | ATACGGAATAGAAAATATTC+AGG | - | chr7.4:6234359-6234378 | None:intergenic | 25.0% |
| ! | ATTCAGATTTGTAAATCTCA+TGG | + | chr7.4:6236581-6236600 | MS.gene28779:intron | 25.0% |
| ! | CAACTGTTAGAAATTAATCT+AGG | + | chr7.4:6236253-6236272 | MS.gene28779:intron | 25.0% |
| ! | CTTAAGTAAAGAACCATATT+AGG | + | chr7.4:6234604-6234623 | MS.gene28779:intron | 25.0% |
| ! | GAATAAAACACTTAAAAGTC+AGG | - | chr7.4:6235037-6235056 | None:intergenic | 25.0% |
| ! | GCATAGAATAGTTGAAAATT+AGG | + | chr7.4:6234497-6234516 | MS.gene28779:intron | 25.0% |
| ! | GTTAATGTGATTGAATTCTT+GGG | + | chr7.4:6236126-6236145 | MS.gene28779:intron | 25.0% |
| ! | GTTTAAGCAATCAAAAGAAA+AGG | - | chr7.4:6234399-6234418 | None:intergenic | 25.0% |
| ! | TACGGAATAGAAAATATTCA+GGG | - | chr7.4:6234358-6234377 | None:intergenic | 25.0% |
| ! | TGTTAATGTGATTGAATTCT+TGG | + | chr7.4:6236125-6236144 | MS.gene28779:intron | 25.0% |
| ! | TTAAAGTATGAGAAAGTTGT+AGG | - | chr7.4:6233980-6233999 | None:intergenic | 25.0% |
| ! | TTAACTTATCATGTACAAGT+TGG | + | chr7.4:6233996-6234015 | MS.gene28779:CDS | 25.0% |
| ! | TTAATATGCATTTCACACAA+GGG | - | chr7.4:6236505-6236524 | None:intergenic | 25.0% |
| ! | TTCAGATTTGTAAATCTCAT+GGG | + | chr7.4:6236582-6236601 | MS.gene28779:intron | 25.0% |
| !! | ATTGAAGAGTAGTAATGTTT+TGG | + | chr7.4:6235603-6235622 | MS.gene28779:CDS | 25.0% |
| !! | CAACTCATTTTATAAATCTG+TGG | + | chr7.4:6233607-6233626 | MS.gene28779:CDS | 25.0% |
| !!! | GGTATTTAATTTGGTCTTTT+CGG | - | chr7.4:6235085-6235104 | None:intergenic | 25.0% |
| !!! | TTTTTGCCATTTCTAATTCA+AGG | - | chr7.4:6235678-6235697 | None:intergenic | 25.0% |
| AAGAACGAGATTGGAAAAAT+GGG | + | chr7.4:6234906-6234925 | MS.gene28779:intron | 30.0% | |
| AATGCTATAATTGCATGCAT+CGG | - | chr7.4:6235523-6235542 | None:intergenic | 30.0% | |
| ACAAAATAAATGAGTTCGAC+AGG | - | chr7.4:6233516-6233535 | None:intergenic | 30.0% | |
| ACTAGCTATTTGTAAAAGGT+AGG | + | chr7.4:6236434-6236453 | MS.gene28779:intron | 30.0% | |
| ATATCAGCACTAGAAAATGT+TGG | - | chr7.4:6235215-6235234 | None:intergenic | 30.0% | |
| CAATACATAAATGCTGTTCA+TGG | - | chr7.4:6235776-6235795 | None:intergenic | 30.0% | |
| CAATGCTGTCAAATATACTA+AGG | + | chr7.4:6235947-6235966 | MS.gene28779:CDS | 30.0% | |
| CTACATTTGTAGTCAAACTT+GGG | + | chr7.4:6236652-6236671 | MS.gene28779:CDS | 30.0% | |
| CTAGCTATTTGTAAAAGGTA+GGG | + | chr7.4:6236435-6236454 | MS.gene28779:intron | 30.0% | |
| GAAAAGAAAACGACATAAGA+TGG | - | chr7.4:6234782-6234801 | None:intergenic | 30.0% | |
| GAAAAGGTAGAGATATCTTT+GGG | - | chr7.4:6236207-6236226 | None:intergenic | 30.0% | |
| GGCAAAAAGTTATGCAATTA+TGG | + | chr7.4:6234214-6234233 | MS.gene28779:CDS | 30.0% | |
| GTTAATATGCATTTCACACA+AGG | - | chr7.4:6236506-6236525 | None:intergenic | 30.0% | |
| TAAGAACGAGATTGGAAAAA+TGG | + | chr7.4:6234905-6234924 | MS.gene28779:intron | 30.0% | |
| TATTTGACAAGAAGTTCATC+TGG | - | chr7.4:6233447-6233466 | None:intergenic | 30.0% | |
| TGAAAAGGTAGAGATATCTT+TGG | - | chr7.4:6236208-6236227 | None:intergenic | 30.0% | |
| TGCTTTCTTTCCATATAGAT+GGG | + | chr7.4:6233545-6233564 | MS.gene28779:CDS | 30.0% | |
| ! | AAATCAAAATTAGACTGGCT+CGG | - | chr7.4:6234819-6234838 | None:intergenic | 30.0% |
| ! | AACTAAATGGATTCAGCATA+CGG | - | chr7.4:6235326-6235345 | None:intergenic | 30.0% |
| ! | AATCCATTTAGTTTCCATAC+AGG | + | chr7.4:6235333-6235352 | MS.gene28779:intron | 30.0% |
| ! | CATTCAATTGTATGGCTTTT+AGG | + | chr7.4:6235115-6235134 | MS.gene28779:intron | 30.0% |
| ! | TGCTTTTCTATTGTTAATGC+AGG | + | chr7.4:6235794-6235813 | MS.gene28779:intron | 30.0% |
| ! | TTTTGGCCATTGAAGATATA+TGG | + | chr7.4:6234836-6234855 | MS.gene28779:intron | 30.0% |
| !! | GAATGTTGACTCATGAAATT+AGG | + | chr7.4:6233847-6233866 | MS.gene28779:CDS | 30.0% |
| !! | TAATTTGGTCTTTTCGGATT+AGG | - | chr7.4:6235079-6235098 | None:intergenic | 30.0% |
| !! | TAGTTATTTCTCAACCATCA+AGG | + | chr7.4:6234554-6234573 | MS.gene28779:intron | 30.0% |
| !! | TTGGACTAGCTATTTGTAAA+AGG | + | chr7.4:6236430-6236449 | MS.gene28779:CDS | 30.0% |
| !!! | AACATTTTCTAGTGCTGATA+TGG | + | chr7.4:6235214-6235233 | MS.gene28779:intron | 30.0% |
| !!! | AGCCAGTCTAATTTTGATTT+TGG | + | chr7.4:6234819-6234838 | MS.gene28779:intron | 30.0% |
| !!! | AGTTTTTTCACAGATGCTAT+AGG | - | chr7.4:6235837-6235856 | None:intergenic | 30.0% |
| AACCATATTAGGTATGCATG+TGG | + | chr7.4:6234615-6234634 | MS.gene28779:intron | 35.0% | |
| AAGAGATGTGGAATATCTTG+TGG | - | chr7.4:6236354-6236373 | None:intergenic | 35.0% | |
| AATAAGTGGCTAAAAAAGGG+AGG | + | chr7.4:6234664-6234683 | MS.gene28779:intron | 35.0% | |
| ACCATATTAGGTATGCATGT+GGG | + | chr7.4:6234616-6234635 | MS.gene28779:intron | 35.0% | |
| AGAACGAGATTGGAAAAATG+GGG | + | chr7.4:6234907-6234926 | MS.gene28779:intron | 35.0% | |
| AGACTTCATTGACAATAGGA+AGG | - | chr7.4:6234040-6234059 | None:intergenic | 35.0% | |
| AGATTTGTAAATCTCATGGG+TGG | + | chr7.4:6236585-6236604 | MS.gene28779:intron | 35.0% | |
| AGGAAATGGCTATCAATCAT+TGG | + | chr7.4:6234517-6234536 | MS.gene28779:intron | 35.0% | |
| AGGGGCAAGAATTAAAGTAA+TGG | - | chr7.4:6235862-6235881 | None:intergenic | 35.0% | |
| ATAAGTGGCTAAAAAAGGGA+GGG | + | chr7.4:6234665-6234684 | MS.gene28779:intron | 35.0% | |
| ATGGCAAAAATCAACCTTCA+TGG | + | chr7.4:6235688-6235707 | MS.gene28779:CDS | 35.0% | |
| ATGTGTAAACTATATCGCAG+AGG | - | chr7.4:6234754-6234773 | None:intergenic | 35.0% | |
| ATTCTTACTCAGGAAGAAAC+CGG | + | chr7.4:6233813-6233832 | MS.gene28779:CDS | 35.0% | |
| ATTTCACACAAGGGCAATAA+TGG | - | chr7.4:6236496-6236515 | None:intergenic | 35.0% | |
| CAAAATAGCAGCATGTGAAA+GGG | - | chr7.4:6235368-6235387 | None:intergenic | 35.0% | |
| CCCAATAAGTGGCTAAAAAA+GGG | + | chr7.4:6234661-6234680 | MS.gene28779:intron | 35.0% | |
| CTACCTGTATGGAAACTAAA+TGG | - | chr7.4:6235339-6235358 | None:intergenic | 35.0% | |
| CTATCAATCATTGGCCATTT+GGG | + | chr7.4:6234526-6234545 | MS.gene28779:intron | 35.0% | |
| CTCAATATCAAGACTGAGAT+AGG | + | chr7.4:6234862-6234881 | MS.gene28779:intron | 35.0% | |
| CTGAAGACTTCATTGACAAT+AGG | - | chr7.4:6234044-6234063 | None:intergenic | 35.0% | |
| CTGCTTTCTTTCCATATAGA+TGG | + | chr7.4:6233544-6233563 | MS.gene28779:CDS | 35.0% | |
| CTTTCCTAGAAATGTAGGTA+TGG | - | chr7.4:6236182-6236201 | None:intergenic | 35.0% | |
| GATTTGTAAATCTCATGGGT+GGG | + | chr7.4:6236586-6236605 | MS.gene28779:intron | 35.0% | |
| GCTACATTTGTAGTCAAACT+TGG | + | chr7.4:6236651-6236670 | MS.gene28779:CDS | 35.0% | |
| GCTGTCAAATATACTAAGGA+GGG | + | chr7.4:6235951-6235970 | MS.gene28779:CDS | 35.0% | |
| GGCCAAAATCAAAATTAGAC+TGG | - | chr7.4:6234824-6234843 | None:intergenic | 35.0% | |
| GGGGCAAGAATTAAAGTAAT+GGG | - | chr7.4:6235861-6235880 | None:intergenic | 35.0% | |
| GGTTCTTTACTTAAGTCACT+AGG | - | chr7.4:6234599-6234618 | None:intergenic | 35.0% | |
| GTAAACTTGGTAAAGAGATG+TGG | - | chr7.4:6236366-6236385 | None:intergenic | 35.0% | |
| GTAAGTGCTTAAATCTAGCA+AGG | - | chr7.4:6236749-6236768 | None:intergenic | 35.0% | |
| TATTCTGTCTTCTACCTTGA+TGG | - | chr7.4:6234571-6234590 | None:intergenic | 35.0% | |
| TCATCCATACCTACATTTCT+AGG | + | chr7.4:6236175-6236194 | MS.gene28779:intron | 35.0% | |
| TCATTTCTATATACGAGTCC+AGG | + | chr7.4:6236061-6236080 | MS.gene28779:CDS | 35.0% | |
| TCCCAATAAGTGGCTAAAAA+AGG | + | chr7.4:6234660-6234679 | MS.gene28779:intron | 35.0% | |
| TCTGCGATATAGTTTACACA+TGG | + | chr7.4:6234753-6234772 | MS.gene28779:intron | 35.0% | |
| TGAGTTGTTCCTTAAGAACA+AGG | + | chr7.4:6233761-6233780 | MS.gene28779:CDS | 35.0% | |
| TGCATAAGAACCCATCTATA+TGG | - | chr7.4:6233558-6233577 | None:intergenic | 35.0% | |
| TGCTGTCAAATATACTAAGG+AGG | + | chr7.4:6235950-6235969 | MS.gene28779:CDS | 35.0% | |
| TGTTCTTAAGGAACAACTCA+CGG | - | chr7.4:6233761-6233780 | None:intergenic | 35.0% | |
| TTGACAATAGGAAGGTTTGT+TGG | - | chr7.4:6234032-6234051 | None:intergenic | 35.0% | |
| TTTCATGATTCATGACTGCA+AGG | - | chr7.4:6235492-6235511 | None:intergenic | 35.0% | |
| ! | AATCAACCTTCATGGTGTTT+TGG | + | chr7.4:6235696-6235715 | MS.gene28779:CDS | 35.0% |
| ! | ACTTTCTAGCACTATCAGTA+GGG | - | chr7.4:6234250-6234269 | None:intergenic | 35.0% |
| ! | AGCATTGTCATCACTTCTTT+TGG | + | chr7.4:6235537-6235556 | MS.gene28779:CDS | 35.0% |
| ! | ATCAACCTTCATGGTGTTTT+GGG | + | chr7.4:6235697-6235716 | MS.gene28779:CDS | 35.0% |
| ! | CAGACACTTTTGAATGTTGT+GGG | + | chr7.4:6235924-6235943 | MS.gene28779:CDS | 35.0% |
| ! | TATTCTAAAGACCACTCTTG+TGG | + | chr7.4:6233890-6233909 | MS.gene28779:CDS | 35.0% |
| ! | TGGTAGCCTTGAATTAGAAA+TGG | + | chr7.4:6235669-6235688 | MS.gene28779:CDS | 35.0% |
| ! | TTACTCAATGATGACGACAT+AGG | + | chr7.4:6236765-6236784 | MS.gene28779:CDS | 35.0% |
| ! | TTTTATCCAGCATCAAGTGA+TGG | + | chr7.4:6236038-6236057 | MS.gene28779:CDS | 35.0% |
| !! | AAATTAGGAGCACTCTTGAT+AGG | + | chr7.4:6233862-6233881 | MS.gene28779:CDS | 35.0% |
| !! | ATGTTGGCGACATTTTGAAA+CGG | - | chr7.4:6235199-6235218 | None:intergenic | 35.0% |
| !! | CTATTGCTGTGAACTTGTTT+TGG | + | chr7.4:6234466-6234485 | MS.gene28779:intron | 35.0% |
| !! | GGTTTTAACACTCAACAGAT+CGG | - | chr7.4:6233739-6233758 | None:intergenic | 35.0% |
| !! | GTTTTAACACTCAACAGATC+GGG | - | chr7.4:6233738-6233757 | None:intergenic | 35.0% |
| !!! | CCCTTTTTTAGCCACTTATT+GGG | - | chr7.4:6234664-6234683 | None:intergenic | 35.0% |
| !!! | TCCCTTTTTTAGCCACTTAT+TGG | - | chr7.4:6234665-6234684 | None:intergenic | 35.0% |
| !!! | TGTGAACTTGTTTTGGAGTT+TGG | + | chr7.4:6234473-6234492 | MS.gene28779:intron | 35.0% |
| AAATGACCATCACTTGATGC+TGG | - | chr7.4:6236047-6236066 | None:intergenic | 40.0% | |
| AACCAGAATCCTTACAGGAT+TGG | + | chr7.4:6236003-6236022 | MS.gene28779:CDS | 40.0% | |
| AAGTTCATCTGGAGGATAAG+GGG | - | chr7.4:6233436-6233455 | None:intergenic | 40.0% | |
| AAGTTTACTCAGTCTCAGAG+TGG | + | chr7.4:6236378-6236397 | MS.gene28779:CDS | 40.0% | |
| AATCTGATGCAGATCTGTCT+AGG | + | chr7.4:6234984-6235003 | MS.gene28779:intron | 40.0% | |
| ACGTTGCCTTAGATTTAGCT+CGG | + | chr7.4:6235428-6235447 | MS.gene28779:CDS | 40.0% | |
| AGAAGTTCATCTGGAGGATA+AGG | - | chr7.4:6233438-6233457 | None:intergenic | 40.0% | |
| AGACTCAGAACAGAACTTAC+AGG | - | chr7.4:6234444-6234463 | None:intergenic | 40.0% | |
| AGGTTCAAACCACTTCTTGA+TGG | - | chr7.4:6233960-6233979 | None:intergenic | 40.0% | |
| ATCCTTAACCTGCACAAAGA+AGG | - | chr7.4:6236313-6236332 | None:intergenic | 40.0% | |
| ATCCTTCTTTGTGCAGGTTA+AGG | + | chr7.4:6236308-6236327 | MS.gene28779:intron | 40.0% | |
| ATGAACAAGCATAAGTGCAG+TGG | - | chr7.4:6233709-6233728 | None:intergenic | 40.0% | |
| ATGGGTTCTTATGCAGTTTG+GGG | + | chr7.4:6233563-6233582 | MS.gene28779:CDS | 40.0% | |
| CAACATTCTCACATGTCTTC+CGG | - | chr7.4:6233835-6233854 | None:intergenic | 40.0% | |
| CCAAAATAGCAGCATGTGAA+AGG | - | chr7.4:6235369-6235388 | None:intergenic | 40.0% | |
| CCATATTAGGTATGCATGTG+GGG | + | chr7.4:6234617-6234636 | MS.gene28779:intron | 40.0% | |
| CTGCACAAAGAAGGATGTTT+GGG | - | chr7.4:6236304-6236323 | None:intergenic | 40.0% | |
| CTTGATGCTGGATAAAACTC+AGG | - | chr7.4:6236035-6236054 | None:intergenic | 40.0% | |
| GAAGTTCATCTGGAGGATAA+GGG | - | chr7.4:6233437-6233456 | None:intergenic | 40.0% | |
| GAGCCACCATATATCTTCAA+TGG | - | chr7.4:6234845-6234864 | None:intergenic | 40.0% | |
| GATGGGACTTATTCTTACTC+AGG | + | chr7.4:6233803-6233822 | MS.gene28779:CDS | 40.0% | |
| GCTATCAATCATTGGCCATT+TGG | + | chr7.4:6234525-6234544 | MS.gene28779:intron | 40.0% | |
| GCTCAGGCCAATCATTAATT+TGG | - | chr7.4:6234190-6234209 | None:intergenic | 40.0% | |
| GTAGTCAAACTTGGGATTTG+TGG | + | chr7.4:6236660-6236679 | MS.gene28779:CDS | 40.0% | |
| GTTCTTAAGGAACAACTCAC+GGG | - | chr7.4:6233760-6233779 | None:intergenic | 40.0% | |
| GTTGTTCCTTAAGAACAAGG+CGG | + | chr7.4:6233764-6233783 | MS.gene28779:CDS | 40.0% | |
| TATCAAGACTGAGATAGGCT+CGG | + | chr7.4:6234867-6234886 | MS.gene28779:intron | 40.0% | |
| TGCAAAACCAGAATCCTTAC+AGG | + | chr7.4:6235998-6236017 | MS.gene28779:CDS | 40.0% | |
| TGCACAAAGAAGGATGTTTG+GGG | - | chr7.4:6236303-6236322 | None:intergenic | 40.0% | |
| TGGCCATTGAAGATATATGG+TGG | + | chr7.4:6234839-6234858 | MS.gene28779:intron | 40.0% | |
| TTGACAAGAAGTTCATCTGG+AGG | - | chr7.4:6233444-6233463 | None:intergenic | 40.0% | |
| TTTGTGCAGGTTAAGGATTC+TGG | + | chr7.4:6236315-6236334 | MS.gene28779:intron | 40.0% | |
| ! | AGATGGGTTCTTATGCAGTT+TGG | + | chr7.4:6233561-6233580 | MS.gene28779:CDS | 40.0% |
| ! | CACTTTCTAGCACTATCAGT+AGG | - | chr7.4:6234251-6234270 | None:intergenic | 40.0% |
| ! | CTACTGATAGTGCTAGAAAG+TGG | + | chr7.4:6234249-6234268 | MS.gene28779:CDS | 40.0% |
| ! | GATGGGTTCTTATGCAGTTT+GGG | + | chr7.4:6233562-6233581 | MS.gene28779:CDS | 40.0% |
| ! | GCAGACACTTTTGAATGTTG+TGG | + | chr7.4:6235923-6235942 | MS.gene28779:CDS | 40.0% |
| ! | GGGGCTTTTATTGTTCTATG+TGG | + | chr7.4:6233582-6233601 | MS.gene28779:CDS | 40.0% |
| ! | TAAATGGATTCAGCATACGG+AGG | - | chr7.4:6235323-6235342 | None:intergenic | 40.0% |
| ! | TAACTTTTTGCCGAAAGCTC+AGG | - | chr7.4:6234206-6234225 | None:intergenic | 40.0% |
| !! | ACTCTGAGACTGAGTAAACT+TGG | - | chr7.4:6236379-6236398 | None:intergenic | 40.0% |
| !! | CCTTTCACATGCTGCTATTT+TGG | + | chr7.4:6235366-6235385 | MS.gene28779:CDS | 40.0% |
| !! | TAATGATTGGCCTGAGCTTT+CGG | + | chr7.4:6234193-6234212 | MS.gene28779:CDS | 40.0% |
| !! | TTTGGTCTTTTCGGATTAGG+AGG | - | chr7.4:6235076-6235095 | None:intergenic | 40.0% |
| !! | TTTGTTCCATGAGTTGATCC+CGG | - | chr7.4:6235408-6235427 | None:intergenic | 40.0% |
| !!! | TTCACATGCTGCTATTTTGG+AGG | + | chr7.4:6235369-6235388 | MS.gene28779:CDS | 40.0% |
| AAAGACCACTCTTGTGGAGT+TGG | + | chr7.4:6233896-6233915 | MS.gene28779:CDS | 45.0% | |
| AAGACCACTCTTGTGGAGTT+GGG | + | chr7.4:6233897-6233916 | MS.gene28779:CDS | 45.0% | |
| ACGAGTCCAGGTTATGACTT+TGG | + | chr7.4:6236073-6236092 | MS.gene28779:intron | 45.0% | |
| AGCCACTTATTGGGATTCAG+CGG | - | chr7.4:6234655-6234674 | None:intergenic | 45.0% | |
| ATCAAGACTGAGATAGGCTC+GGG | + | chr7.4:6234868-6234887 | MS.gene28779:intron | 45.0% | |
| ATGCCATCGGTGATGAAAAG+CGG | + | chr7.4:6235895-6235914 | MS.gene28779:CDS | 45.0% | |
| ATGGCATGAGTAGGTAGATC+AGG | - | chr7.4:6235882-6235901 | None:intergenic | 45.0% | |
| CAGGTTAAGGATTCTGGATG+TGG | + | chr7.4:6236321-6236340 | MS.gene28779:intron | 45.0% | |
| CCAAACATCCTTCTTTGTGC+AGG | + | chr7.4:6236302-6236321 | MS.gene28779:intron | 45.0% | |
| CCCCACATGCATACCTAATA+TGG | - | chr7.4:6234620-6234639 | None:intergenic | 45.0% | |
| CCTGCACAAAGAAGGATGTT+TGG | - | chr7.4:6236305-6236324 | None:intergenic | 45.0% | |
| CTCCACTTCCACTATATGCT+TGG | - | chr7.4:6236725-6236744 | None:intergenic | 45.0% | |
| GAAGAGCTTGATAGGGAGAT+GGG | + | chr7.4:6233786-6233805 | MS.gene28779:CDS | 45.0% | |
| GAGATGCCAAAGTCATAACC+TGG | - | chr7.4:6236082-6236101 | None:intergenic | 45.0% | |
| GATCTACCTACTCATGCCAT+CGG | + | chr7.4:6235882-6235901 | MS.gene28779:CDS | 45.0% | |
| GATGCTGGATAAAACTCAGG+AGG | - | chr7.4:6236032-6236051 | None:intergenic | 45.0% | |
| GCTAGGATAAGACCTCTTGT+CGG | + | chr7.4:6234104-6234123 | MS.gene28779:CDS | 45.0% | |
| GGGCTCTTTCCTAGAAATGT+AGG | - | chr7.4:6236187-6236206 | None:intergenic | 45.0% | |
| TCTATCATAACCCTCTGCTC+TGG | - | chr7.4:6235577-6235596 | None:intergenic | 45.0% | |
| TGGCATGAGTAGGTAGATCA+GGG | - | chr7.4:6235881-6235900 | None:intergenic | 45.0% | |
| TGTCGATGTTGTTGCAGATC+AGG | + | chr7.4:6234292-6234311 | MS.gene28779:intron | 45.0% | |
| TGTGGTATACGCATAGCTCT+CGG | - | chr7.4:6234071-6234090 | None:intergenic | 45.0% | |
| ! | AGAGGTCTTATCCTAGCAAG+TGG | - | chr7.4:6234101-6234120 | None:intergenic | 45.0% |
| ! | CAAGCATATAGTGGAAGTGG+AGG | + | chr7.4:6236723-6236742 | MS.gene28779:CDS | 45.0% |
| ! | TCTGCTTGCAGCTTGATGAT+CGG | - | chr7.4:6236700-6236719 | None:intergenic | 45.0% |
| !! | GGCAATAATGGTGACTTGCT+AGG | - | chr7.4:6236484-6236503 | None:intergenic | 45.0% |
| !! | GTTGGGTAGGACTTTAGGAT+TGG | + | chr7.4:6233914-6233933 | MS.gene28779:CDS | 45.0% |
| !! | TTGTTCCATGAGTTGATCCC+GGG | - | chr7.4:6235407-6235426 | None:intergenic | 45.0% |
| AAAGTGGCGAGACCATGAGT+TGG | + | chr7.4:6234265-6234284 | MS.gene28779:CDS | 50.0% | |
| AAGGCTACCATCTTCCAGTC+GGG | - | chr7.4:6235659-6235678 | None:intergenic | 50.0% | |
| AAGGGCAACTGCTACCTGTA+TGG | - | chr7.4:6235350-6235369 | None:intergenic | 50.0% | |
| ACAAGGCGGAAGAGCTTGAT+AGG | + | chr7.4:6233778-6233797 | MS.gene28779:CDS | 50.0% | |
| ACCTGAAGTTGTTGCGGTTC+GGG | + | chr7.4:6234139-6234158 | MS.gene28779:CDS | 50.0% | |
| AGCACACGACACTTTAGCGA+TGG | - | chr7.4:6233673-6233692 | None:intergenic | 50.0% | |
| AGCAGAGGCCAAGCATATAG+TGG | + | chr7.4:6236714-6236733 | MS.gene28779:CDS | 50.0% | |
| ATCTCATGGGTGGGCACATA+TGG | + | chr7.4:6236595-6236614 | MS.gene28779:CDS | 50.0% | |
| CAAGGCGGAAGAGCTTGATA+GGG | + | chr7.4:6233779-6233798 | MS.gene28779:CDS | 50.0% | |
| CAAGGCTACCATCTTCCAGT+CGG | - | chr7.4:6235660-6235679 | None:intergenic | 50.0% | |
| CAATCATGTCCCCACATCTG+AGG | - | chr7.4:6235260-6235279 | None:intergenic | 50.0% | |
| CACACACTTGTCCACTTGCT+AGG | + | chr7.4:6234087-6234106 | MS.gene28779:CDS | 50.0% | |
| CACATATGGATGGAGAGCGA+GGG | + | chr7.4:6236609-6236628 | MS.gene28779:CDS | 50.0% | |
| CACCTGAAGTTGTTGCGGTT+CGG | + | chr7.4:6234138-6234157 | MS.gene28779:CDS | 50.0% | |
| CATCGACAAGCTCCAACTCA+TGG | - | chr7.4:6234280-6234299 | None:intergenic | 50.0% | |
| CCTCTCCCAAAACACCATGA+AGG | - | chr7.4:6235705-6235724 | None:intergenic | 50.0% | |
| CGCAAGTGCGATTAGAACGT+CGG | - | chr7.4:6233481-6233500 | None:intergenic | 50.0% | |
| CGCCAATCCTGTAAGGATTC+TGG | - | chr7.4:6236008-6236027 | None:intergenic | 50.0% | |
| CTAGCAAGTGGACAAGTGTG+TGG | - | chr7.4:6234089-6234108 | None:intergenic | 50.0% | |
| CTCACATGCACCTCAGATGT+GGG | + | chr7.4:6235247-6235266 | MS.gene28779:intron | 50.0% | |
| CTCTCGCCGAGCTAAATCTA+AGG | - | chr7.4:6235437-6235456 | None:intergenic | 50.0% | |
| CTGTGGATGCCATCAAGAAG+TGG | + | chr7.4:6233948-6233967 | MS.gene28779:CDS | 50.0% | |
| GAACCACTGCTAGATCGAAC+AGG | - | chr7.4:6236405-6236424 | None:intergenic | 50.0% | |
| GATCATCAAGCTGCAAGCAG+AGG | + | chr7.4:6236699-6236718 | MS.gene28779:CDS | 50.0% | |
| GATTGGAGGAATGTGCACTG+TGG | + | chr7.4:6233931-6233950 | MS.gene28779:CDS | 50.0% | |
| GGAAGAGCTTGATAGGGAGA+TGG | + | chr7.4:6233785-6233804 | MS.gene28779:CDS | 50.0% | |
| GGCACATATCTTCCGACAAG+AGG | - | chr7.4:6234119-6234138 | None:intergenic | 50.0% | |
| GGCATGAGTAGGTAGATCAG+GGG | - | chr7.4:6235880-6235899 | None:intergenic | 50.0% | |
| GTGGAGTTGGGTAGGACTTT+AGG | + | chr7.4:6233909-6233928 | MS.gene28779:CDS | 50.0% | |
| GTGGTATACGCATAGCTCTC+GGG | - | chr7.4:6234070-6234089 | None:intergenic | 50.0% | |
| GTTCGATCTAGCAGTGGTTC+AGG | + | chr7.4:6236405-6236424 | MS.gene28779:CDS | 50.0% | |
| TCACATGCACCTCAGATGTG+GGG | + | chr7.4:6235248-6235267 | MS.gene28779:intron | 50.0% | |
| TCATCACCGATGGCATGAGT+AGG | - | chr7.4:6235891-6235910 | None:intergenic | 50.0% | |
| TCTAGCAGTGGTTCAGGTCT+TGG | + | chr7.4:6236411-6236430 | MS.gene28779:CDS | 50.0% | |
| TGTGCCACCTGAAGTTGTTG+CGG | + | chr7.4:6234133-6234152 | MS.gene28779:CDS | 50.0% | |
| ! | CTTAGATTTAGCTCGGCGAG+AGG | + | chr7.4:6235435-6235454 | MS.gene28779:CDS | 50.0% |
| ! | CTTGCAGCTTGATGATCGGA+TGG | - | chr7.4:6236696-6236715 | None:intergenic | 50.0% |
| ! | GCTCTTCCGCCTTGTTCTTA+AGG | - | chr7.4:6233773-6233792 | None:intergenic | 50.0% |
| ! | GGCCAAGCATATAGTGGAAG+TGG | + | chr7.4:6236720-6236739 | MS.gene28779:CDS | 50.0% |
| ! | GTTTGGGGTCAGTCATGAGA+TGG | - | chr7.4:6236288-6236307 | None:intergenic | 50.0% |
| ! | TGAACTGACTCCAGAGCAGA+GGG | + | chr7.4:6235564-6235583 | MS.gene28779:CDS | 50.0% |
| ! | TGTTCTAGATCTGTCCCGAC+TGG | + | chr7.4:6235642-6235661 | MS.gene28779:CDS | 50.0% |
| !! | GGGTAGGACTTTAGGATTGG+AGG | + | chr7.4:6233917-6233936 | MS.gene28779:CDS | 50.0% |
| !!! | AAGCCGCTTTTCATCACCGA+TGG | - | chr7.4:6235901-6235920 | None:intergenic | 50.0% |
| !!! | CCTTCATGGTGTTTTGGGAG+AGG | + | chr7.4:6235702-6235721 | MS.gene28779:CDS | 50.0% |
| ACCCGAACCGCAACAACTTC+AGG | - | chr7.4:6234143-6234162 | None:intergenic | 55.0% | |
| AGGAGGTCGCCAATCCTGTA+AGG | - | chr7.4:6236015-6236034 | None:intergenic | 55.0% | |
| CATGGGTGGGCACATATGGA+TGG | + | chr7.4:6236599-6236618 | MS.gene28779:CDS | 55.0% | |
| CCACTCTTGTGGAGTTGGGT+AGG | + | chr7.4:6233901-6233920 | MS.gene28779:CDS | 55.0% | |
| CCTACCCAACTCCACAAGAG+TGG | - | chr7.4:6233904-6233923 | None:intergenic | 55.0% | |
| CCTCACATGCACCTCAGATG+TGG | + | chr7.4:6235246-6235265 | MS.gene28779:intron | 55.0% | |
| CGAACCGCAACAACTTCAGG+TGG | - | chr7.4:6234140-6234159 | None:intergenic | 55.0% | |
| GAGAGCGAGGGTCACGATAA+AGG | + | chr7.4:6236621-6236640 | MS.gene28779:CDS | 55.0% | |
| GATCTGTCCCGACTGGAAGA+TGG | + | chr7.4:6235649-6235668 | MS.gene28779:CDS | 55.0% | |
| GCACATATGGATGGAGAGCG+AGG | + | chr7.4:6236608-6236627 | MS.gene28779:CDS | 55.0% | |
| GGACCTGTTCGATCTAGCAG+TGG | + | chr7.4:6236399-6236418 | MS.gene28779:CDS | 55.0% | |
| GGCCGCTGAATCCCAATAAG+TGG | + | chr7.4:6234650-6234669 | MS.gene28779:intron | 55.0% | |
| GTGGCTAAAAAAGGGAGGGC+AGG | + | chr7.4:6234669-6234688 | MS.gene28779:intron | 55.0% | |
| ! | AGGAGGCATGTGCAGGCAAA+GGG | - | chr7.4:6235059-6235078 | None:intergenic | 55.0% |
| ! | CCACATCTGAGGTGCATGTG+AGG | - | chr7.4:6235249-6235268 | None:intergenic | 55.0% |
| ! | CTGAACTGACTCCAGAGCAG+AGG | + | chr7.4:6235563-6235582 | MS.gene28779:CDS | 55.0% |
| ! | TAGGAGGCATGTGCAGGCAA+AGG | - | chr7.4:6235060-6235079 | None:intergenic | 55.0% |
| ! | TCGGATTAGGAGGCATGTGC+AGG | - | chr7.4:6235066-6235085 | None:intergenic | 55.0% |
| AGCTCGGCGAGAGGCTGAAA+TGG | + | chr7.4:6235444-6235463 | MS.gene28779:CDS | 60.0% | |
| TGCATGTGGGGTATGCGCTG+AGG | + | chr7.4:6234629-6234648 | MS.gene28779:intron | 60.0% | |
| GCGAGCCCGGGATCAACTCA+TGG | + | chr7.4:6235399-6235418 | MS.gene28779:CDS | 65.0% | |
| TGGAGGAGTCCATGCGAGCC+CGG | + | chr7.4:6235386-6235405 | MS.gene28779:CDS | 65.0% | |
| ! | GAGTTGATCCCGGGCTCGCA+TGG | - | chr7.4:6235398-6235417 | None:intergenic | 65.0% |
| GGAGGAGTCCATGCGAGCCC+GGG | + | chr7.4:6235387-6235406 | MS.gene28779:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 6233405 | 6236821 | 6233405 | ID=MS.gene28779 |
| chr7.4 | mRNA | 6233405 | 6236821 | 6233405 | ID=MS.gene28779.t1;Parent=MS.gene28779 |
| chr7.4 | exon | 6233405 | 6234298 | 6233405 | ID=MS.gene28779.t1.exon1;Parent=MS.gene28779.t1 |
| chr7.4 | CDS | 6233405 | 6234298 | 6233405 | ID=cds.MS.gene28779.t1;Parent=MS.gene28779.t1 |
| chr7.4 | exon | 6235355 | 6235723 | 6235355 | ID=MS.gene28779.t1.exon2;Parent=MS.gene28779.t1 |
| chr7.4 | CDS | 6235355 | 6235723 | 6235355 | ID=cds.MS.gene28779.t1;Parent=MS.gene28779.t1 |
| chr7.4 | exon | 6235816 | 6236082 | 6235816 | ID=MS.gene28779.t1.exon3;Parent=MS.gene28779.t1 |
| chr7.4 | CDS | 6235816 | 6236082 | 6235816 | ID=cds.MS.gene28779.t1;Parent=MS.gene28779.t1 |
| chr7.4 | exon | 6236324 | 6236451 | 6236324 | ID=MS.gene28779.t1.exon4;Parent=MS.gene28779.t1 |
| chr7.4 | CDS | 6236324 | 6236451 | 6236324 | ID=cds.MS.gene28779.t1;Parent=MS.gene28779.t1 |
| chr7.4 | exon | 6236587 | 6236821 | 6236587 | ID=MS.gene28779.t1.exon5;Parent=MS.gene28779.t1 |
| chr7.4 | CDS | 6236587 | 6236821 | 6236587 | ID=cds.MS.gene28779.t1;Parent=MS.gene28779.t1 |
| Gene Sequence |
| Protein sequence |
