AlfalfaGEDB | MS.gene061793

M. sativa cultivar XinJiangDaYe / MS.gene061793

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061793.t1	XP_013446791.1	99.3	606	4	0	1	606	1	606	1.30E-285	991.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061793.t1	C0LGT1	80.9	607	113	3	1	606	9	613	2.0e-218	760.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061793.t1	A0A072TVB6	99.3	606	4	0	1	606	1	606	9.5e-286	991.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene061793	PPI
MS.gene016743	MS.gene061793	PPI
MS.gene02211	MS.gene061793	PPI
MS.gene025691	MS.gene061793	PPI
MS.gene057886	MS.gene061793	PPI
MS.gene061793	MS.gene22508	PPI
MS.gene061793	MS.gene20202	PPI
MS.gene061793	MS.gene07021	PPI
MS.gene061793	MS.gene032807	PPI
MS.gene061793	MS.gene73675	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene061793.t1	MTR_8g090140	99.010	606	6	0	1	606	1	606	1234
MS.gene061793.t1	MTR_3g087060	78.595	598	120	4	12	606	17	609	972
MS.gene061793.t1	MTR_3g087060	78.912	588	118	3	20	606	16	598	962
MS.gene061793.t1	MTR_3g087060	77.867	497	102	4	12	505	17	508	791
MS.gene061793.t1	MTR_8g095030	56.628	611	232	7	1	606	15	597	662
MS.gene061793.t1	MTR_1g097160	52.885	624	262	5	10	606	9	627	602
MS.gene061793.t1	MTR_7g018200	50.751	599	267	9	25	606	39	626	566
MS.gene061793.t1	MTR_2g008360	52.108	593	247	3	3	577	14	587	563
MS.gene061793.t1	MTR_8g095030	57.905	506	183	5	1	503	15	493	559
MS.gene061793.t1	MTR_5g033820	50.252	595	277	5	25	606	37	625	558

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene061793.t1	AT5G10290	76.403	606	142	1	1	606	9	613	934
MS.gene061793.t1	AT5G10290	76.403	606	142	1	1	606	9	613	934
MS.gene061793.t1	AT5G65240	73.223	605	160	2	3	606	4	607	890
MS.gene061793.t1	AT5G65240	73.000	600	160	2	3	601	4	602	880
MS.gene061793.t1	AT5G63710	55.354	607	238	8	5	606	1	579	636
MS.gene061793.t1	AT5G63710	55.354	607	238	8	5	606	1	579	636
MS.gene061793.t1	AT5G63710	55.263	608	239	8	4	606	35	614	635
MS.gene061793.t1	AT5G63710	55.263	608	239	8	4	606	36	615	633
MS.gene061793.t1	AT1G71830	53.045	624	267	6	4	606	7	625	605
MS.gene061793.t1	AT1G34210	52.736	603	261	4	22	606	32	628	586

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Find 126 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACTGGCCTCATAAT+TGG	0.135342	4.3:-10247226	MS.gene061793:CDS
AACCAACTGGCCTCATAATT+GGG	0.399679	4.3:-10247225	MS.gene061793:CDS
AACTCAAGTTCGCGGGACAA+TGG	0.485593	4.3:-10244600	MS.gene061793:CDS
AACTGATTATGAAAGCCCTG+GGG	0.705978	4.3:-10245946	MS.gene061793:CDS
AAGAATGTACCTTGCGAATC+AGG	0.307020	4.3:+10249470	None:intergenic
AAGCTTGATCAGGTTGGATT+TGG	0.281444	4.3:-10248127	MS.gene061793:CDS
AAGGAGAAGGGTTGGCCGAA+AGG	0.547336	4.3:-10243758	MS.gene061793:CDS
AAGTTATCACTGAATGCTTC+TGG	0.342606	4.3:-10249271	MS.gene061793:CDS
AATGCCAAACTTACAAGAAT+TGG	0.322328	4.3:+10248049	None:intergenic
AATGCTAGAAGGAGAAGGGT+TGG	0.598036	4.3:-10243766	MS.gene061793:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACGTATCCCATTTGAT+GGG	+	chr4.3:10246661-10246680	None:intergenic	30.0%
AAAGCCGTACTTATAATGAA+AGG	-	chr4.3:10246828-10246847	MS.gene061793:intron	30.0%
AACAAACAAAGCAGAAAACA+AGG	+	chr4.3:10248755-10248774	None:intergenic	30.0%
AACTACGTACACACAAATTA+AGG	-	chr4.3:10248129-10248148	MS.gene061793:CDS	30.0%
AACTATTGAACAAGAAGACT+TGG	+	chr4.3:10244632-10244651	None:intergenic	30.0%
AATCATATCTCTAGTAAGTG+GGG	+	chr4.3:10246808-10246827	None:intergenic	30.0%
AATGCCAAACTTACAAGAAT+TGG	+	chr4.3:10245110-10245129	None:intergenic	30.0%
AATGCTCATGAAGATATTCT+AGG	+	chr4.3:10248412-10248431	None:intergenic	30.0%
ACATCACGATGAATAATCTT+AGG	+	chr4.3:10248440-10248459	None:intergenic	30.0%
AGGTCAATTCTATATCACTA+AGG	-	chr4.3:10244269-10244288	MS.gene061793:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	10243632	10249546	10243632	ID=MS.gene061793
chr4.3	mRNA	10243632	10249546	10243632	ID=MS.gene061793.t1;Parent=MS.gene061793
chr4.3	exon	10249480	10249546	10249480	ID=MS.gene061793.t1.exon1;Parent=MS.gene061793.t1
chr4.3	CDS	10249480	10249546	10249480	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10249181	10249313	10249181	ID=MS.gene061793.t1.exon2;Parent=MS.gene061793.t1
chr4.3	CDS	10249181	10249313	10249181	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10248945	10249016	10248945	ID=MS.gene061793.t1.exon3;Parent=MS.gene061793.t1
chr4.3	CDS	10248945	10249016	10248945	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10248063	10248206	10248063	ID=MS.gene061793.t1.exon4;Parent=MS.gene061793.t1
chr4.3	CDS	10248063	10248206	10248063	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10247883	10247954	10247883	ID=MS.gene061793.t1.exon5;Parent=MS.gene061793.t1
chr4.3	CDS	10247883	10247954	10247883	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10247724	10247789	10247724	ID=MS.gene061793.t1.exon6;Parent=MS.gene061793.t1
chr4.3	CDS	10247724	10247789	10247724	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10247370	10247443	10247370	ID=MS.gene061793.t1.exon7;Parent=MS.gene061793.t1
chr4.3	CDS	10247370	10247443	10247370	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10247119	10247259	10247119	ID=MS.gene061793.t1.exon8;Parent=MS.gene061793.t1
chr4.3	CDS	10247119	10247259	10247119	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10245796	10246137	10245796	ID=MS.gene061793.t1.exon9;Parent=MS.gene061793.t1
chr4.3	CDS	10245796	10246137	10245796	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10244445	10244839	10244445	ID=MS.gene061793.t1.exon10;Parent=MS.gene061793.t1
chr4.3	CDS	10244445	10244839	10244445	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1
chr4.3	exon	10243632	10243946	10243632	ID=MS.gene061793.t1.exon11;Parent=MS.gene061793.t1
chr4.3	CDS	10243632	10243946	10243632	ID=cds.MS.gene061793.t1;Parent=MS.gene061793.t1

Gene Sequence

>MS.gene061793

ATGGACTTCTTATTTGTACTATTGCTGTTGGGTTGCTTGTGTTCATTTGTGTTACCTGATTCGCAAGGTACATTCTTATATTTGCATGTCATTCACTAGGAAATATTTAATTGTTAAACATGCTACATTCCTTTATGAGGAGAAATAAATACGTACAATGTCTGTAGTATATTGACAGAGTTTAATGAATGTCTCATTTTTCTAGTACTTGTTAATGGTTTTGTTCATTTCAGGAGATGCACTCATTGCATTGAAGTTATCACTGAATGCTTCTGGTCAACAGCTTAGTGACTGGAATGAAAATCAAGTCAACCCTTGTACCTGGTCGCGCGTTAACTGTGACTTTAACAACAATGTTAATCAAGTGTAAGATATTCTCTATTGACTATTTTCTAATGTTTGGTCTAGAAAAGATGTTCACAGTCATTGATTACCTTCATTGTTCGTGGGAAATTATATATCCATGCTATATATTTCAAACTCTTAGATCTCTAGTTTGTGCATGCCGTATAATTACGTGTTCATTGCAGTTCACTAGCGATGATGGGATTCCCAGGATACTTGACCCCAAGGATAGGAGCTCTAAAATATCTTGAAACTCTGTAAGTATTTATATCATGAAATGTCCACGCAATTTAGGTCAATTCTATATCACTAAGGATATGTTTGGTATTCCACTCACTAAATTTTAGATAACTGGGAAGTTATGAGTTTGTCTTCAGTTGTTAATCATATAAACCCAATTGTTTAGATTGTTCTTGCAGCCCACTTTTCCAATTTTTTTTCTTTTTTCTGTTTGCTGACTACTCTTGTAGTTCTTGACTTGTGCATTCTAGTGTTATGGTAAGTTGCATCTGTAACATCTCTGTTATTTTATATTTCTTATTTTAGGGTCCAAGCTTTTCACAGCTGTGTATGTTGTGCATTTGATGATCTGTATTGTCAGCGTTAATTAAGTCTGTCTGAATCTAATGTTGTGGTTATGATCCTTACTCCGCCAAGTCTTCTTGTTCAATAGTTCTTCTTTTGCAAGAGAAGTGCTACTAACACACTCTTTCTCTCATTGAGTGAAATTTATGTGGGTCTCAATCTCTCATCACTTTATGGGGGAGTACTCCCAAAGTGATTGGACTCCCAAAGTATGTTGCTATCACTCACATTTTGCAAATGTTACTTTTATTTGGGGGAGGGGTTTGACTGTTACAGCAGTTCATGCTTTGGTTTCATTTTCATTCAATTTTTTTTATGGGAAATTGTCTTCTTTTGAATATTTATCATTAACAAAATACAAGCAAAGTTTAAGGGTAACTATTGATGCATGTCATGCAATAATAATGCAGTTCTTTGCAAGGAAATGGCATCACTGGTAACATACCAAAAGAGTTCGGAAACCTGACAAGCTTGATCAGGTTGGATTTGGAAAACAACAGATTAACTGGTGAAATACCGTCTTCCTTTGGTAATCTTAAAAAGCTCCAATTCTTGTAAGTTTGGCATTCTCTTTGGTAGGTTTGACAGATATATAATGTGTCTTGGCATGTGTTTTTATCGTGTTATAATGTTTAAAAGTGTTATATTTTGTTTGCTACCAGGACATTGAGTCAAAACAATCTCAGTGGAACTATTCCTGAATCACTTGCCAATATATCAAGCTTGAGCGAAATGTACGTGAAATAATGGTTTCTGTAAGTTTATCTGTTACTTCTACATTCCATCAATTTAGCATCTAACTGATTGTCCAAACTTCTCTTTTGCAGTCAGCTAGATTCAAATAATCTTAGTGGCCGGATTCCGCAGCATTTATTTCAGGTTCCTAAATACAAGTATGGATGGTAGATTAGTATTTAAACAATCATTTATAGCAACGTTTAAACATATCTTTCTATCCCTTACCACATCATTTATTCCATGAAACACTGGAAAAGTGGTCACATGCATCCAAAGAGCCCAGATAGAGAAAACGATTAATGTTACTCACATATATGTCTACAGAGTCCTTGGATCGATTAATTTAAGTGGCCGTATACAAAATGTTTTTTTTTTTTTTTGTCTGCAGCAACCCCCAATTACATCCCACCTTTTTAACTGTGCTCCTTATTGCAGTTTCAGTGGAAATACTTTGTATTGTGGTGTGAGTTATGGTCAACCTTGTGCATATAATAACAATGCAGATCAAGGTAATTTGATGGGAGTATTTTGTTGGTCCTGTTCTATGATGTGTTGTTATCGACAACTTTCTCCCTTCCCTTTGCTACAACCTGAAGACTAATTTTCCTTCACATGGCAGGTTCATCACATAAACCAACTGGCCTCATAATTGGGATTAGCATAGCATTTATAGCTATGCTTGTTATTGGTGGTCTGCTGCTATTTTGGTGCAAGGGTAGACACAAGGGCTACAAGCGTGAAGTTTTTGTTGATGTTGCAGGTTTGAGTTCTTGTTCAATCTCCAATGTTCTTGTATTTTTGTATTATGCTTCTCTTTAGTGAAATATTTAAGCATATGTTAATTACTGCCATGTTCATTTATTTAGTTTTGATTGTGTTTTTTCCCTTCTTTCTGGTGTCCTCACATCCAGTGATCCACTGGATCCAGTGACTAGACATTAGACCGTCTAATAGTTTAATCTTTTGGGATAACTGGTCCTTACGACTACTCATTGGAACTTTGAATATACCCATTTCCATTCCTTTAAACATTTCATGTTCAATGAATGTGGGATATGCTCAAATCCTGTGCCCAACTGGATATGGTGCTAGTTGTTGGGAATTTAAAACTATTAAGAGACTACTCCCAAGCTCACCCAGTCTCTCATGTGTTCAGCTGTACGATCTAATTTCCATGTAACCAACTAACTGTGACTTAGTTAGGACTGAACTGGTTCAGGTCAGCCACAGTATGAAGTTGATAAATAGCTCTCAGCTATATCATGAATATTTAACAATTCATTTCAATCCAAGTGAACAGAATGAATTCATATTACTTTCTGTCTGTTATGAATTTCTAAATGAACTAATACCGAGCTCCCATCAAATGGGATACGTTTTTGGGATTTATTGGAACTTAAAACTTCACATTATGATATACCCATTTCCATTCCGTTGAACCTTAATTGAGATTGACATGAACTATCTCCTTTTTAATATTTTCCTGTGCTATAAATATTGAGATTCCCCACTTACTAGAGATATGATTAAAGCCGTACTTATAATGAAAGGTTTGAACAATTCTCATCACTTGAACTAACTTTTGAGGCGGAGTTAGGCTCTGTCTGTTGTCAATTCTAATACTCTTATTTTATCATTAATTAAACTTGTTTCCTGTTTCATCAGGTGAAGTTTGAGTTAGGTGCAGCCAATTATCAACTGCAATTCTATATTTTATCATTTATTTTTACTGTTTCATCAGGTGAAGTTGATCGACGAATTGCGTTTGGTCAACTAAGAAGATTTGCATGGAGAGAACTACAAATAGCTACCGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGCGTCCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGCCCTGGGGGAGATGCAGCTTTCACGCGTGAAGTTGAGATGATAAGTGTAGCTGTTCATAGGAACTTGTTACGGCTGATTGGGTTTTGCACTACTCCAACTGAGCGCCTCTTGGTTTATCCCTTCATGCAGAACTTAAGTGTCGCTTATCGTTTACGAGGTATTAAGTTACAATGCATATTGACATCGCTGGTGTGCTAAGCATTCAATTTGATTTTCTATAGAAAAGAAAGCGTTTATTATTTTATTACTTGAACTGGAGGGTAATTCATATTATTGAATTCTGCCACAGTTCTGATTATCTTTCAGTCATATTGGCCCCGTATGTTTTAGATTTTTAAAAAAATCTATTTTTTTAGTAAAAAAAAATCACTTTTGTCATTTTTAAGTGTTTGTTTAGGATTTTAAAAAAAATCATTTTATCAAAAAAATCTGTTTTAACTCAAAAATGAAAATCTACTAGGATTAGCTTTTCTCAAAATCTATTTTTTTCAAAAACAAGGAGGTAACACATGAACTAGTTAAAAATCTTTTTTTTTTTTTTAAAAGTTATTTTTTTTGATAGTAAACAAACACAAATAACTTCAGATTTTTTTTTAAAATCTTTAAAAAAAATCTCTAGATTTTTCTGACACAATATATATATATATTTTTCTAGATTTTTCTGACACAATATATATATATATTTTTTAAAGCTAAACAAACGCACCCATTACCATGTCAATTATTTCAGAAATTAATCGGGCAAAGAAAGAATTTGAAAGATTTAACTGTGCATTGAATGATATATACTAACAATTTTTAGATTTATCCAACACCTTAGAACAATGGATAGCTTTATTGTCCATATATCTATGCCCAATGTGTACCTATAACTGTGATGTGAACCTATTACCTTAAAAGAAAAACTACGTACACACAAATTAAGGATGTTGGTTATGTTAATTTAATTTTCTTTAACTCATAGAAAGTGAAATACATTTTTAAACTACCCTTGATAGTATTTATCGTAGAGGCCCTTTATATTCCACTTCTCTTGAATTGTATGCAAGGGTAGATAGGATTTCTGTTCATATTTTTTACCGGTAAAATTTTATTGTGTGAATACTGATGCAGAACTCAAAGCTGGGGAAGCTGTTTTGGATTGGCCTACGAGAAAACGAGTGGCTCTGGGAACTGCACGGGGCCTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGTGATGTGAAGGCAGCTAATGTATTACTAGACGAAGATTTTGAGGCAGTTGTCGGTGACTTTGGTTTGGCAAAGTTAGTTGACATTCGGAAGACTAATGTGACAACTCAAGTTCGCGGGACAATGGGTCACATAGCTCCTGAATATCTGTCGACCGGAAAATCTTCTGAAAGGACTGATGTTTTTGGTTACGGGATTATGCTTCTGGAGCTTGTTACAGGTCAACGCGCAATCGACTTTTCACGTTTGGAAGAGGAAGATGATGTGCTGTTGCTTGACCATGTAATGCCACTTTTTCCTCCTTGTTTTCTGCTTTGTTTGTTTCTTGTTTGTGTAGCATGCTTGGAACTTTTGTATGCCTCTTTTGAGCGGTTTGGTAAAGTAATAGTGAACTGCTGCTGAGCTTTTTTTGGAGTTGTGTTTGAGTTTATGGTGTTTGTGTTTGTGGCTGTTTGGATCAACTTATTTGAACTTATCTACCACCATAAGCACTTGTGAGAATGTTTGGGAGAAATTACGAAAAGATATATGTTATAAGTTGTTATCAGCTTATTTCCGTAAACTCTTCAAGATTGCTGATGTAAACAACTTATAGTTTATATAAACACAATTTGATTTTATTTTTTATGTTGTTATAGAAATAGCTAATTTTATATACTATAAGCTCTCAATTAAGTTGTTTATCTAAACAGTGTCATATATTAAAGAAAAACATATGTATCATCGTTTATCAGTTTATTCATGCTAGTAACTGTTTTTACTCTGTTTTGTGTTGTATAGGTTAAGAAATTAGAACGAGAGAAAAGACTAGAAGCTATTGTTGATCGCAACCTAAATAAAAATTACAACATGCAAGAGGTAGAAATGATGATAAAAGTTGCATTACTGTGCACTCAAGCAACGTCGGAGGACCGTCCCCTGATGTCTGAGGTTGTAAGAATGCTAGAAGGAGAAGGGTTGGCCGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTGAATCGGAGGCAAGAATACGATAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCAGTTTATAATCAAGACGCCATTGAGTTATCTGGTGGGAGATGA

Protein sequence

>MS.gene061793.t1

MDFLFVLLLLGCLCSFVLPDSQGDALIALKLSLNASGQQLSDWNENQVNPCTWSRVNCDFNNNVNQVSLAMMGFPGYLTPRIGALKYLETLSLQGNGITGNIPKEFGNLTSLIRLDLENNRLTGEIPSSFGNLKKLQFLTLSQNNLSGTIPESLANISSLSEIQLDSNNLSGRIPQHLFQVPKYNFSGNTLYCGVSYGQPCAYNNNADQGSSHKPTGLIIGISIAFIAMLVIGGLLLFWCKGRHKGYKREVFVDVAGEVDRRIAFGQLRRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFTREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKAGEAVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDIRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLEAIVDRNLNKNYNMQEVEMMIKVALLCTQATSEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYDRLQRRFDWGEDSVYNQDAIELSGGR