Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28800.t1 | XP_003625953.1 | 97.2 | 576 | 10 | 2 | 1 | 572 | 1 | 574 | 4.70E-293 | 1016.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28800.t1 | G7KSS0 | 97.2 | 576 | 10 | 2 | 1 | 572 | 1 | 574 | 3.4e-293 | 1016.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052774 | MS.gene28800 | 0.85099 | 1.19E-60 | -1.69E-46 |
| MS.gene059061 | MS.gene28800 | 0.836131 | 1.12E-56 | -1.69E-46 |
| MS.gene059890 | MS.gene28800 | 0.800117 | 1.68E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28800.t1 | MTR_7g109360 | 97.917 | 576 | 6 | 2 | 1 | 572 | 1 | 574 | 0.0 | 1148 |
| MS.gene28800.t1 | MTR_7g109360 | 97.773 | 494 | 5 | 2 | 83 | 572 | 1 | 492 | 0.0 | 988 |
| MS.gene28800.t1 | MTR_7g109360 | 98.804 | 418 | 3 | 1 | 155 | 572 | 31 | 446 | 0.0 | 847 |
| MS.gene28800.t1 | MTR_1g087270 | 69.646 | 593 | 159 | 6 | 1 | 572 | 1 | 593 | 0.0 | 793 |
| MS.gene28800.t1 | MTR_3g102140 | 53.252 | 492 | 190 | 9 | 2 | 477 | 5 | 472 | 4.94e-165 | 478 |
| MS.gene28800.t1 | MTR_1g038470 | 62.838 | 148 | 52 | 1 | 290 | 437 | 56 | 200 | 3.29e-57 | 191 |
| MS.gene28800.t1 | MTR_4g076240 | 24.045 | 445 | 254 | 10 | 24 | 462 | 657 | 1023 | 7.07e-20 | 94.7 |
| MS.gene28800.t1 | MTR_7g090940 | 26.891 | 238 | 153 | 6 | 232 | 462 | 926 | 1149 | 2.80e-19 | 92.8 |
| MS.gene28800.t1 | MTR_8g064220 | 71.739 | 46 | 13 | 0 | 48 | 93 | 17 | 62 | 4.59e-15 | 70.5 |
| MS.gene28800.t1 | MTR_8g064210 | 65.517 | 58 | 20 | 0 | 23 | 80 | 145 | 202 | 4.14e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28800.t1 | AT4G02100 | 63.269 | 569 | 173 | 7 | 12 | 572 | 6 | 546 | 0.0 | 695 |
| MS.gene28800.t1 | AT2G47440 | 64.298 | 563 | 153 | 7 | 12 | 572 | 10 | 526 | 0.0 | 682 |
| MS.gene28800.t1 | AT2G47440 | 64.014 | 553 | 151 | 7 | 22 | 572 | 9 | 515 | 0.0 | 660 |
| MS.gene28800.t1 | AT3G62570 | 57.913 | 575 | 214 | 8 | 3 | 572 | 1 | 552 | 0.0 | 628 |
| MS.gene28800.t1 | AT1G02650 | 53.818 | 550 | 212 | 4 | 16 | 565 | 6 | 513 | 0.0 | 555 |
| MS.gene28800.t1 | AT1G02650 | 53.690 | 542 | 209 | 4 | 24 | 565 | 11 | 510 | 0.0 | 543 |
| MS.gene28800.t1 | AT5G12430 | 27.636 | 275 | 172 | 6 | 227 | 489 | 867 | 1126 | 1.70e-22 | 102 |
| MS.gene28800.t1 | AT2G41520 | 22.523 | 444 | 252 | 10 | 46 | 480 | 606 | 966 | 6.68e-17 | 85.1 |
| MS.gene28800.t1 | AT2G41520 | 22.523 | 444 | 252 | 10 | 46 | 480 | 706 | 1066 | 7.29e-17 | 85.1 |
| MS.gene28800.t1 | AT2G41520 | 27.273 | 209 | 130 | 5 | 280 | 480 | 841 | 1035 | 3.32e-12 | 70.1 |
Find 117 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTGGTGGGTTGTTGGTTT+GGG | 0.142222 | 7.4:-6016715 | None:intergenic |
| ATGAAATTTGTAGCTTTATC+TGG | 0.219434 | 7.4:-6017349 | None:intergenic |
| CAACATCTTTGAATCTTCTT+AGG | 0.241704 | 7.4:-6015369 | None:intergenic |
| GGTGAAGCATGCTGCCATTT+AGG | 0.252385 | 7.4:+6016563 | MS.gene28800:CDS |
| GGTGTGGTGGGTTGTTGGTT+TGG | 0.252636 | 7.4:-6016716 | None:intergenic |
| GTGAATCCTGCGGTGTTTAA+AGG | 0.269571 | 7.4:+6017685 | MS.gene28800:CDS |
| TTGTAGCTTTATCTGGCTTA+TGG | 0.271225 | 7.4:-6017342 | None:intergenic |
| TTCATTGTTGTTGTATAGAT+TGG | 0.327452 | 7.4:+6017435 | MS.gene28800:CDS |
| TTTCAATTCTTGAATCTTAG+TGG | 0.334226 | 7.4:-6017206 | None:intergenic |
| TTCTTGAATCTTAGTGGTTA+AGG | 0.343497 | 7.4:-6017200 | None:intergenic |
| TTGATCCAAACGCGGTGATA+TGG | 0.349593 | 7.4:-6015314 | None:intergenic |
| CATCCTCCATCAGTCCTAAA+TGG | 0.364318 | 7.4:-6016577 | None:intergenic |
| GTGGCGGTGTGGTGGGTTGT+TGG | 0.365856 | 7.4:-6016721 | None:intergenic |
| TGGGTGTTCCCGTTCTGAAT+TGG | 0.369585 | 7.4:+6017291 | MS.gene28800:CDS |
| GAATTGCTAGCGCAGCATTC+CGG | 0.370872 | 7.4:+6016627 | MS.gene28800:CDS |
| TGTGTGCAGATACTTGGTTT+TGG | 0.377172 | 7.4:+6016541 | MS.gene28800:intron |
| CAAGTGCTTGAATGCAGGTT+GGG | 0.381214 | 7.4:-6017009 | None:intergenic |
| AGGGGCTCGTGGCGGTGTGG+TGG | 0.390479 | 7.4:-6016729 | None:intergenic |
| TCATTCGCCATTCTCAAACT+TGG | 0.391758 | 7.4:-6015415 | None:intergenic |
| TCTAAATCGTGAAGTGAATC+AGG | 0.407704 | 7.4:-6017070 | None:intergenic |
| GTTGATTACTATGCATTGAT+TGG | 0.409360 | 7.4:+6017259 | MS.gene28800:CDS |
| TTTAGCCATATCACCGCGTT+TGG | 0.415618 | 7.4:+6015309 | MS.gene28800:CDS |
| CAGCTGCACGACGGCGGAGG+AGG | 0.424219 | 7.4:-6016799 | None:intergenic |
| TGATCTTAAGAAGAAGGTTA+TGG | 0.427625 | 7.4:+6015552 | MS.gene28800:CDS |
| TGCTTCGAAGAGTGAAGCTC+TGG | 0.428658 | 7.4:-6017035 | None:intergenic |
| GGGGCTCGTGGCGGTGTGGT+GGG | 0.431108 | 7.4:-6016728 | None:intergenic |
| CACTTTCTGTTTCGTTGAGA+GGG | 0.431292 | 7.4:-6016748 | None:intergenic |
| TTTGGGGTGTCTCCAGCCAA+TGG | 0.436063 | 7.4:-6016698 | None:intergenic |
| TTACGTGATCGTAAACTTCC+CGG | 0.441406 | 7.4:+6017121 | MS.gene28800:CDS |
| TTACATTCCAAGTTTGAGAA+TGG | 0.442091 | 7.4:+6015408 | MS.gene28800:CDS |
| TGTTTCTGATCTTAAGAAGA+AGG | 0.445367 | 7.4:+6015546 | MS.gene28800:CDS |
| AGCTCTTTCCAATTCAGAAC+GGG | 0.445368 | 7.4:-6017299 | None:intergenic |
| GTGGCGTTTCCATGCTGGAC+CGG | 0.445828 | 7.4:-6017140 | None:intergenic |
| TGTGGTGGGTTGTTGGTTTG+GGG | 0.447654 | 7.4:-6016714 | None:intergenic |
| TTGAAACAAAGATTATCTTC+TGG | 0.452233 | 7.4:+6017223 | MS.gene28800:CDS |
| TCCTCTATTAACTATCCCAT+TGG | 0.455666 | 7.4:+6016682 | MS.gene28800:CDS |
| ACATTGTGGCGTTTCCATGC+TGG | 0.457036 | 7.4:-6017145 | None:intergenic |
| TGATTGTGTGTGCAGATACT+TGG | 0.457505 | 7.4:+6016535 | MS.gene28800:intron |
| GCAATGGTTCTTCTCCAAAC+AGG | 0.463178 | 7.4:+6016599 | MS.gene28800:CDS |
| ACTCGGCGAGGAAGCCTTGT+GGG | 0.463578 | 7.4:-6016901 | None:intergenic |
| GCTTCATACTTCACCGGCAT+TGG | 0.464103 | 7.4:-6017769 | None:intergenic |
| GGTTTCAAGTGCTTGAATGC+AGG | 0.468380 | 7.4:-6017014 | None:intergenic |
| CATTGAAAGGTGTGAATTTG+CGG | 0.473244 | 7.4:+6017369 | MS.gene28800:CDS |
| ACGATTTAATCGACCAATGC+CGG | 0.474881 | 7.4:+6017756 | MS.gene28800:CDS |
| GTAAAAGTTGTGAGAAAGAA+GGG | 0.487805 | 7.4:+6015584 | MS.gene28800:CDS |
| TCAAGTGCTTGAATGCAGGT+TGG | 0.488120 | 7.4:-6017010 | None:intergenic |
| GCATCTGCACACCGTTCTGC+TGG | 0.492922 | 7.4:+6016938 | MS.gene28800:CDS |
| TTGGGGTGTCTCCAGCCAAT+GGG | 0.495456 | 7.4:-6016697 | None:intergenic |
| ACGTGATATTGATACTGTTA+AGG | 0.496784 | 7.4:+6017396 | MS.gene28800:CDS |
| AAGCTACAAATTTCATTGAA+AGG | 0.497204 | 7.4:+6017356 | MS.gene28800:CDS |
| TGTAAAAGTTGTGAGAAAGA+AGG | 0.497562 | 7.4:+6015583 | MS.gene28800:CDS |
| GCTTCTTTCATCTGATTCAC+CGG | 0.497678 | 7.4:+6015495 | MS.gene28800:CDS |
| ACACTTTCTGTTTCGTTGAG+AGG | 0.500008 | 7.4:-6016749 | None:intergenic |
| TTTAAACACCGCAGGATTCA+CGG | 0.501985 | 7.4:-6017683 | None:intergenic |
| TGGCGTTTCCATGCTGGACC+GGG | 0.508257 | 7.4:-6017139 | None:intergenic |
| GCACTCGCTGCCCTCGACGC+TGG | 0.509640 | 7.4:+6016821 | MS.gene28800:CDS |
| GTGCAGCTGCACGACGGCGG+AGG | 0.510527 | 7.4:-6016802 | None:intergenic |
| GTTGTATAGATTGGTTCAGA+AGG | 0.512610 | 7.4:+6017444 | MS.gene28800:CDS |
| CTATTAACTATCCCATTGGC+TGG | 0.515604 | 7.4:+6016686 | MS.gene28800:CDS |
| GGAATTTGATGTGGCAGAGG+AGG | 0.517187 | 7.4:-6016778 | None:intergenic |
| GCGAATGAAGATCCTTCCTC+TGG | 0.518376 | 7.4:+6015430 | MS.gene28800:CDS |
| TCTGATAGTTCTTCTAGAGA+AGG | 0.518715 | 7.4:+6015466 | MS.gene28800:CDS |
| TGAGTAGAGACCAGCGTCGA+GGG | 0.518981 | 7.4:-6016831 | None:intergenic |
| GCCAATGGGATAGTTAATAG+AGG | 0.519008 | 7.4:-6016683 | None:intergenic |
| GTAAGATACAGAGAGATTCC+AGG | 0.519030 | 7.4:+6017166 | MS.gene28800:CDS |
| TTAAAGCTCTGATCTCGAAC+CGG | 0.521070 | 7.4:-6015514 | None:intergenic |
| ACCAGCAGACACTCTCTCTC+CGG | 0.522583 | 7.4:-6016646 | None:intergenic |
| CTCAATGCTTCATACTTCAC+CGG | 0.529803 | 7.4:-6017775 | None:intergenic |
| CTTAAGAAGAAGGTTATGGC+AGG | 0.531276 | 7.4:+6015556 | MS.gene28800:CDS |
| GTGAGAAAGAAGGGCAATGG+AGG | 0.534292 | 7.4:+6015593 | MS.gene28800:CDS |
| TTGTATAGATTGGTTCAGAA+GGG | 0.541753 | 7.4:+6017445 | MS.gene28800:CDS |
| GAAGAAGAAGAACCAGAGGA+AGG | 0.559166 | 7.4:-6015442 | None:intergenic |
| AACACACCTTTAAACACCGC+AGG | 0.560265 | 7.4:-6017691 | None:intergenic |
| CACTCGGCGAGGAAGCCTTG+TGG | 0.560936 | 7.4:-6016902 | None:intergenic |
| GTTGTGAGAAAGAAGGGCAA+TGG | 0.562233 | 7.4:+6015590 | MS.gene28800:CDS |
| ATGCTGCCATTTAGGACTGA+TGG | 0.563097 | 7.4:+6016571 | MS.gene28800:CDS |
| AGGACTGATGGAGGATGCAA+TGG | 0.565558 | 7.4:+6016583 | MS.gene28800:CDS |
| GGAGGAATTTGATGTGGCAG+AGG | 0.569430 | 7.4:-6016781 | None:intergenic |
| GGTCGCCGTGCTGCCCCACA+AGG | 0.573594 | 7.4:+6016887 | MS.gene28800:CDS |
| TGCCGTGATCTTGCGGTGGT+AGG | 0.576750 | 7.4:+6017715 | MS.gene28800:CDS |
| TTCCTACCACCGCAAGATCA+CGG | 0.579572 | 7.4:-6017717 | None:intergenic |
| GGAAGCCTTGTGGGGCAGCA+CGG | 0.584047 | 7.4:-6016892 | None:intergenic |
| TACAAGAAGATATCAAAGGC+TGG | 0.584462 | 7.4:-6017660 | None:intergenic |
| TCCGGAGAGAGAGTGTCTGC+TGG | 0.585361 | 7.4:+6016645 | MS.gene28800:CDS |
| AGGAAGCTGCTGAGAAACAA+AGG | 0.590239 | 7.4:+6017500 | MS.gene28800:CDS |
| CGAGAAGATTCAAAGCTGAA+AGG | 0.596568 | 7.4:-6015279 | None:intergenic |
| TGCTCTGTGCATGTAGCACT+CGG | 0.598080 | 7.4:-6016918 | None:intergenic |
| CCGCTACAGAAAAGAAACAT+TGG | 0.598730 | 7.4:+6014948 | MS.gene28800:CDS |
| ACTTTCTGTTTCGTTGAGAG+GGG | 0.600446 | 7.4:-6016747 | None:intergenic |
| GAGCTCTTTCCAATTCAGAA+CGG | 0.612218 | 7.4:-6017300 | None:intergenic |
| CTACAGAAAAGAAACATTGG+TGG | 0.614005 | 7.4:+6014951 | MS.gene28800:CDS |
| GAGAGGGGCTCGTGGCGGTG+TGG | 0.615235 | 7.4:-6016732 | None:intergenic |
| AAGCTCTTGAGCTTAGAGCT+AGG | 0.620753 | 7.4:+6015335 | MS.gene28800:CDS |
| GTTTCGTTGAGAGGGGCTCG+TGG | 0.621457 | 7.4:-6016740 | None:intergenic |
| CTCGGCGAGGAAGCCTTGTG+GGG | 0.621473 | 7.4:-6016900 | None:intergenic |
| GGTAGGAAGCTTGTTGACGC+AGG | 0.623102 | 7.4:+6017732 | MS.gene28800:CDS |
| AGTGCGGTTACAATCAGCGA+TGG | 0.629036 | 7.4:-6016975 | None:intergenic |
| TTGGTGGCTCACAAACCGTA+AGG | 0.631059 | 7.4:+6014967 | MS.gene28800:CDS |
| TTAAGAAGAAGGTTATGGCA+GGG | 0.636621 | 7.4:+6015557 | MS.gene28800:CDS |
| ACGGTACAAGAAGATATCAA+AGG | 0.644354 | 7.4:-6017664 | None:intergenic |
| GTAAACTTCCCGGTCCAGCA+TGG | 0.644733 | 7.4:+6017131 | MS.gene28800:CDS |
| CAGCGAGTGCAGCTGCACGA+CGG | 0.645174 | 7.4:-6016808 | None:intergenic |
| TCTCTCTGTATCTTACATTG+TGG | 0.650016 | 7.4:-6017159 | None:intergenic |
| TTCTTGTACCGTGAATCCTG+CGG | 0.652851 | 7.4:+6017675 | MS.gene28800:CDS |
| GGCGGAGGAGGAATTTGATG+TGG | 0.653050 | 7.4:-6016787 | None:intergenic |
| TGCATAGTAATCAACACTAG+TGG | 0.653769 | 7.4:-6017251 | None:intergenic |
| GCATTGATTGGAGTTCGACG+TGG | 0.654550 | 7.4:+6017271 | MS.gene28800:CDS |
| CTGAGTAGAGACCAGCGTCG+AGG | 0.660918 | 7.4:-6016832 | None:intergenic |
| TAATAGAGGAAAACTGTCGT+CGG | 0.664622 | 7.4:-6016669 | None:intergenic |
| CTGCAATTCGACCAGCAGAA+CGG | 0.668383 | 7.4:-6016949 | None:intergenic |
| CATTGATTGGAGTTCGACGT+GGG | 0.672757 | 7.4:+6017272 | MS.gene28800:CDS |
| CGAGTGCAGCTGCACGACGG+CGG | 0.675639 | 7.4:-6016805 | None:intergenic |
| TCGTTGAGAGGGGCTCGTGG+CGG | 0.683214 | 7.4:-6016737 | None:intergenic |
| CTGCCATTTAGGACTGATGG+AGG | 0.697675 | 7.4:+6016574 | MS.gene28800:CDS |
| TTGGGTCTAGTGAAAGAGTG+CGG | 0.726603 | 7.4:-6016991 | None:intergenic |
| TGTGCATGTAGCACTCGGCG+AGG | 0.731603 | 7.4:-6016913 | None:intergenic |
| TCAAGAGCTTGATCCAAACG+CGG | 0.749008 | 7.4:-6015322 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACATCATTAACT+AGG | - | chr7.4:6015031-6015050 | None:intergenic | 15.0% |
| !! | AACTATTATTATGCAAAATT+CGG | - | chr7.4:6016371-6016390 | None:intergenic | 15.0% |
| !! | AAACACAAAACATTAACAAA+AGG | - | chr7.4:6015180-6015199 | None:intergenic | 20.0% |
| !! | ACACACAATCAAAATTATTT+AGG | - | chr7.4:6016526-6016545 | None:intergenic | 20.0% |
| !! | TAATAATAGTTTCACTGAAA+TGG | + | chr7.4:6016380-6016399 | MS.gene28800:intron | 20.0% |
| !! | TACTAGAAACAATATAAACT+TGG | - | chr7.4:6015130-6015149 | None:intergenic | 20.0% |
| !!! | AAAGACTATTTTTGATTGTA+TGG | + | chr7.4:6016313-6016332 | MS.gene28800:intron | 20.0% |
| !!! | ATTTGGAAGTTTTTTAGTAA+GGG | + | chr7.4:6015713-6015732 | MS.gene28800:intron | 20.0% |
| !!! | TCAATTTGATTGATTTTTGT+GGG | - | chr7.4:6016436-6016455 | None:intergenic | 20.0% |
| !!! | TTCAATTTGATTGATTTTTG+TGG | - | chr7.4:6016437-6016456 | None:intergenic | 20.0% |
| ! | AAGCTACAAATTTCATTGAA+AGG | + | chr7.4:6017356-6017375 | MS.gene28800:CDS | 25.0% |
| ! | AAGGTTAATAATTGTTACCT+AGG | + | chr7.4:6016069-6016088 | MS.gene28800:intron | 25.0% |
| ! | AGGTTAATAATTGTTACCTA+GGG | + | chr7.4:6016070-6016089 | MS.gene28800:intron | 25.0% |
| ! | CATTTCTCAAAAATAGTAGA+CGG | + | chr7.4:6016866-6016885 | MS.gene28800:CDS | 25.0% |
| ! | TTATTAACCTTTGTGATTGA+CGG | - | chr7.4:6016060-6016079 | None:intergenic | 25.0% |
| ! | TTGAAACAAAGATTATCTTC+TGG | + | chr7.4:6017223-6017242 | MS.gene28800:CDS | 25.0% |
| ! | TTTCAATTCTTGAATCTTAG+TGG | - | chr7.4:6017209-6017228 | None:intergenic | 25.0% |
| !! | ATTTGTTACTCTTTCTATAC+AGG | + | chr7.4:6015850-6015869 | MS.gene28800:intron | 25.0% |
| !! | TCAAATTGAATGTTTTTCCT+TGG | + | chr7.4:6016447-6016466 | MS.gene28800:intron | 25.0% |
| !! | TCATTTCATTTTCTTCAATG+TGG | + | chr7.4:6015740-6015759 | MS.gene28800:intron | 25.0% |
| !! | TTCATTGTTGTTGTATAGAT+TGG | + | chr7.4:6017435-6017454 | MS.gene28800:CDS | 25.0% |
| !!! | ATGAAATTTGTAGCTTTATC+TGG | - | chr7.4:6017352-6017371 | None:intergenic | 25.0% |
| !!! | CATTTGGAAGTTTTTTAGTA+AGG | + | chr7.4:6015712-6015731 | MS.gene28800:intron | 25.0% |
| !!! | GTTTTTTTGTTGTCGTTAAA+TGG | + | chr7.4:6016476-6016495 | MS.gene28800:intron | 25.0% |
| !!! | TAAGAGTAGTAATGTTTTTG+TGG | + | chr7.4:6017630-6017649 | MS.gene28800:CDS | 25.0% |
| AACAAAAAAACCATTCACCA+AGG | - | chr7.4:6016467-6016486 | None:intergenic | 30.0% | |
| ACGTGATATTGATACTGTTA+AGG | + | chr7.4:6017396-6017415 | MS.gene28800:CDS | 30.0% | |
| CAACATCTTTGAATCTTCTT+AGG | - | chr7.4:6015372-6015391 | None:intergenic | 30.0% | |
| CTTTCATCTTCTATTGTCAA+TGG | + | chr7.4:6016207-6016226 | MS.gene28800:intron | 30.0% | |
| GTAAAAGTTGTGAGAAAGAA+GGG | + | chr7.4:6015584-6015603 | MS.gene28800:CDS | 30.0% | |
| TGATCTTAAGAAGAAGGTTA+TGG | + | chr7.4:6015552-6015571 | MS.gene28800:CDS | 30.0% | |
| TGTAAAAGTTGTGAGAAAGA+AGG | + | chr7.4:6015583-6015602 | MS.gene28800:CDS | 30.0% | |
| TGTGTGAAAATGTTACCTTA+CGG | - | chr7.4:6014985-6015004 | None:intergenic | 30.0% | |
| TTACATTCCAAGTTTGAGAA+TGG | + | chr7.4:6015408-6015427 | MS.gene28800:CDS | 30.0% | |
| TTCTTGAATCTTAGTGGTTA+AGG | - | chr7.4:6017203-6017222 | None:intergenic | 30.0% | |
| ! | GTTGATTACTATGCATTGAT+TGG | + | chr7.4:6017259-6017278 | MS.gene28800:CDS | 30.0% |
| ! | TAGCAATTCTTTTTCCTGTT+TGG | - | chr7.4:6016616-6016635 | None:intergenic | 30.0% |
| ! | TGTTTCTGATCTTAAGAAGA+AGG | + | chr7.4:6015546-6015565 | MS.gene28800:CDS | 30.0% |
| ! | TTGTATAGATTGGTTCAGAA+GGG | + | chr7.4:6017445-6017464 | MS.gene28800:CDS | 30.0% |
| ! | TTTGAAATCTGTCTCTCATT+TGG | + | chr7.4:6015696-6015715 | MS.gene28800:intron | 30.0% |
| !! | GATGAGTAATGTTTTAGATG+AGG | + | chr7.4:6017480-6017499 | MS.gene28800:CDS | 30.0% |
| !! | TATTTTTGAGAAATGGCGAA+TGG | - | chr7.4:6016861-6016880 | None:intergenic | 30.0% |
| !!! | CGTCTACTATTTTTGAGAAA+TGG | - | chr7.4:6016868-6016887 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGTTGCAGATTG+TGG | + | chr7.4:6015201-6015220 | MS.gene28800:intron | 30.0% |
| AATTATTCACATGTGCACTG+AGG | + | chr7.4:6016023-6016042 | MS.gene28800:intron | 35.0% | |
| ACGGTACAAGAAGATATCAA+AGG | - | chr7.4:6017667-6017686 | None:intergenic | 35.0% | |
| AGCTGAGCTGAAAAATAACA+AGG | + | chr7.4:6017600-6017619 | MS.gene28800:CDS | 35.0% | |
| CAATCTGATCTCACACAAAT+AGG | - | chr7.4:6015820-6015839 | None:intergenic | 35.0% | |
| CTACAGAAAAGAAACATTGG+TGG | + | chr7.4:6014951-6014970 | MS.gene28800:CDS | 35.0% | |
| GAGACAATGCATTGTAGAAA+TGG | - | chr7.4:6016188-6016207 | None:intergenic | 35.0% | |
| GAGATAATGCATTCTTGAAG+TGG | + | chr7.4:6016239-6016258 | MS.gene28800:intron | 35.0% | |
| TAATAGAGGAAAACTGTCGT+CGG | - | chr7.4:6016672-6016691 | None:intergenic | 35.0% | |
| TACAAGAAGATATCAAAGGC+TGG | - | chr7.4:6017663-6017682 | None:intergenic | 35.0% | |
| TAGGGAAATTCTTGGTTGTA+GGG | + | chr7.4:6016088-6016107 | MS.gene28800:intron | 35.0% | |
| TCCTCTATTAACTATCCCAT+TGG | + | chr7.4:6016682-6016701 | MS.gene28800:CDS | 35.0% | |
| TCTAAATCGTGAAGTGAATC+AGG | - | chr7.4:6017073-6017092 | None:intergenic | 35.0% | |
| TCTCTCTGTATCTTACATTG+TGG | - | chr7.4:6017162-6017181 | None:intergenic | 35.0% | |
| TGCATAGTAATCAACACTAG+TGG | - | chr7.4:6017254-6017273 | None:intergenic | 35.0% | |
| TTAAGAAGAAGGTTATGGCA+GGG | + | chr7.4:6015557-6015576 | MS.gene28800:CDS | 35.0% | |
| TTCAATGCACGACAAAAAGT+TGG | + | chr7.4:6015963-6015982 | MS.gene28800:intron | 35.0% | |
| TTGTTACCTAGGGAAATTCT+TGG | + | chr7.4:6016080-6016099 | MS.gene28800:intron | 35.0% | |
| TTTCTTCAATGTGGAGTTTC+TGG | + | chr7.4:6015749-6015768 | MS.gene28800:intron | 35.0% | |
| ! | CATTGAAAGGTGTGAATTTG+CGG | + | chr7.4:6017369-6017388 | MS.gene28800:CDS | 35.0% |
| ! | CCAATGTTTCTTTTCTGTAG+CGG | - | chr7.4:6014951-6014970 | None:intergenic | 35.0% |
| ! | CTTTTTACCGTCAATCACAA+AGG | + | chr7.4:6016050-6016069 | MS.gene28800:intron | 35.0% |
| ! | GAATGTTTTTCCTTGGTGAA+TGG | + | chr7.4:6016454-6016473 | MS.gene28800:intron | 35.0% |
| ! | GTTGTATAGATTGGTTCAGA+AGG | + | chr7.4:6017444-6017463 | MS.gene28800:CDS | 35.0% |
| ! | TCTGATAGTTCTTCTAGAGA+AGG | + | chr7.4:6015466-6015485 | MS.gene28800:CDS | 35.0% |
| !! | TTGTAGCTTTATCTGGCTTA+TGG | - | chr7.4:6017345-6017364 | None:intergenic | 35.0% |
| ACACTTTCTGTTTCGTTGAG+AGG | - | chr7.4:6016752-6016771 | None:intergenic | 40.0% | |
| ACGATTTAATCGACCAATGC+CGG | + | chr7.4:6017756-6017775 | MS.gene28800:CDS | 40.0% | |
| ACTTTCTGTTTCGTTGAGAG+GGG | - | chr7.4:6016750-6016769 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGAACCAG+AGG | - | chr7.4:6015449-6015468 | None:intergenic | 40.0% | |
| AGCTCTTTCCAATTCAGAAC+GGG | - | chr7.4:6017302-6017321 | None:intergenic | 40.0% | |
| CACTTTCTGTTTCGTTGAGA+GGG | - | chr7.4:6016751-6016770 | None:intergenic | 40.0% | |
| CCGCTACAGAAAAGAAACAT+TGG | + | chr7.4:6014948-6014967 | MS.gene28800:CDS | 40.0% | |
| CGAGAAGATTCAAAGCTGAA+AGG | - | chr7.4:6015282-6015301 | None:intergenic | 40.0% | |
| CTACAACCAAGAATTTCCCT+AGG | - | chr7.4:6016089-6016108 | None:intergenic | 40.0% | |
| CTAGGGAAATTCTTGGTTGT+AGG | + | chr7.4:6016087-6016106 | MS.gene28800:intron | 40.0% | |
| CTATAGCTAGTGAGGCTAAA+TGG | + | chr7.4:6015895-6015914 | MS.gene28800:intron | 40.0% | |
| CTATTAACTATCCCATTGGC+TGG | + | chr7.4:6016686-6016705 | MS.gene28800:CDS | 40.0% | |
| CTCAATGCTTCATACTTCAC+CGG | - | chr7.4:6017778-6017797 | None:intergenic | 40.0% | |
| CTTAAGAAGAAGGTTATGGC+AGG | + | chr7.4:6015556-6015575 | MS.gene28800:CDS | 40.0% | |
| GAGCTCTTTCCAATTCAGAA+CGG | - | chr7.4:6017303-6017322 | None:intergenic | 40.0% | |
| GCCAATGGGATAGTTAATAG+AGG | - | chr7.4:6016686-6016705 | None:intergenic | 40.0% | |
| GCTTCTTTCATCTGATTCAC+CGG | + | chr7.4:6015495-6015514 | MS.gene28800:CDS | 40.0% | |
| GTAAGATACAGAGAGATTCC+AGG | + | chr7.4:6017166-6017185 | MS.gene28800:CDS | 40.0% | |
| TCATCCCTTATTACCTCTTC+TGG | - | chr7.4:6016265-6016284 | None:intergenic | 40.0% | |
| TCATTCGCCATTCTCAAACT+TGG | - | chr7.4:6015418-6015437 | None:intergenic | 40.0% | |
| TGATTGTGTGTGCAGATACT+TGG | + | chr7.4:6016535-6016554 | MS.gene28800:intron | 40.0% | |
| TGTGAGACTCTATGATACCA+TGG | - | chr7.4:6016131-6016150 | None:intergenic | 40.0% | |
| TTACGTGATCGTAAACTTCC+CGG | + | chr7.4:6017121-6017140 | MS.gene28800:CDS | 40.0% | |
| TTCGGCAAAGATCAGTATCA+TGG | - | chr7.4:6016353-6016372 | None:intergenic | 40.0% | |
| TTTAAACACCGCAGGATTCA+CGG | - | chr7.4:6017686-6017705 | None:intergenic | 40.0% | |
| ! | GAATCGGAAGACAGCATTTT+CGG | + | chr7.4:6015098-6015117 | MS.gene28800:intron | 40.0% |
| ! | GTTAAGGCACAAAGTTTTCC+TGG | - | chr7.4:6017187-6017206 | None:intergenic | 40.0% |
| ! | TGTGTGCAGATACTTGGTTT+TGG | + | chr7.4:6016541-6016560 | MS.gene28800:intron | 40.0% |
| ! | TTAAAGCTCTGATCTCGAAC+CGG | - | chr7.4:6015517-6015536 | None:intergenic | 40.0% |
| !! | GTGTGCAGATACTTGGTTTT+GGG | + | chr7.4:6016542-6016561 | MS.gene28800:intron | 40.0% |
| AACACACCTTTAAACACCGC+AGG | - | chr7.4:6017694-6017713 | None:intergenic | 45.0% | |
| AAGCTCTTGAGCTTAGAGCT+AGG | + | chr7.4:6015335-6015354 | MS.gene28800:CDS | 45.0% | |
| AGGAAGCTGCTGAGAAACAA+AGG | + | chr7.4:6017500-6017519 | MS.gene28800:CDS | 45.0% | |
| AGTGGCCAGAAGAGGTAATA+AGG | + | chr7.4:6016257-6016276 | MS.gene28800:intron | 45.0% | |
| ATTCTTGAAGTGGCCAGAAG+AGG | + | chr7.4:6016249-6016268 | MS.gene28800:intron | 45.0% | |
| CAAGTGCTTGAATGCAGGTT+GGG | - | chr7.4:6017012-6017031 | None:intergenic | 45.0% | |
| CATCCTCCATCAGTCCTAAA+TGG | - | chr7.4:6016580-6016599 | None:intergenic | 45.0% | |
| GAAGAAGAAGAACCAGAGGA+AGG | - | chr7.4:6015445-6015464 | None:intergenic | 45.0% | |
| GCAATGGTTCTTCTCCAAAC+AGG | + | chr7.4:6016599-6016618 | MS.gene28800:CDS | 45.0% | |
| GGAAATTCTTGGTTGTAGGG+TGG | + | chr7.4:6016091-6016110 | MS.gene28800:intron | 45.0% | |
| GTGAATCCTGCGGTGTTTAA+AGG | + | chr7.4:6017685-6017704 | MS.gene28800:CDS | 45.0% | |
| GTGGCCAGAAGAGGTAATAA+GGG | + | chr7.4:6016258-6016277 | MS.gene28800:intron | 45.0% | |
| GTTGTGAGAAAGAAGGGCAA+TGG | + | chr7.4:6015590-6015609 | MS.gene28800:CDS | 45.0% | |
| TCAAGAGCTTGATCCAAACG+CGG | - | chr7.4:6015325-6015344 | None:intergenic | 45.0% | |
| TCAAGTGCTTGAATGCAGGT+TGG | - | chr7.4:6017013-6017032 | None:intergenic | 45.0% | |
| TGGACAATGTTTGAGGACCA+TGG | + | chr7.4:6016111-6016130 | MS.gene28800:intron | 45.0% | |
| TGTAGGGTGGACAATGTTTG+AGG | + | chr7.4:6016104-6016123 | MS.gene28800:intron | 45.0% | |
| TTAGCCTCACTAGCTATAGC+TGG | - | chr7.4:6015894-6015913 | None:intergenic | 45.0% | |
| TTCTTGTACCGTGAATCCTG+CGG | + | chr7.4:6017675-6017694 | MS.gene28800:CDS | 45.0% | |
| TTGATCCAAACGCGGTGATA+TGG | - | chr7.4:6015317-6015336 | None:intergenic | 45.0% | |
| TTGGGTCTAGTGAAAGAGTG+CGG | - | chr7.4:6016994-6017013 | None:intergenic | 45.0% | |
| TTTAGCCATATCACCGCGTT+TGG | + | chr7.4:6015309-6015328 | MS.gene28800:CDS | 45.0% | |
| ! | ATGCTGCCATTTAGGACTGA+TGG | + | chr7.4:6016571-6016590 | MS.gene28800:CDS | 45.0% |
| ! | ATGCTGTCTTCCGATTCGAT+CGG | - | chr7.4:6015095-6015114 | None:intergenic | 45.0% |
| ! | CATTGATTGGAGTTCGACGT+GGG | + | chr7.4:6017272-6017291 | MS.gene28800:CDS | 45.0% |
| ! | GGTTTCAAGTGCTTGAATGC+AGG | - | chr7.4:6017017-6017036 | None:intergenic | 45.0% |
| ! | TGTGTTTTGCCGTGATCTTG+CGG | + | chr7.4:6017708-6017727 | MS.gene28800:CDS | 45.0% |
| ACATTGTGGCGTTTCCATGC+TGG | - | chr7.4:6017148-6017167 | None:intergenic | 50.0% | |
| AGGACTGATGGAGGATGCAA+TGG | + | chr7.4:6016583-6016602 | MS.gene28800:CDS | 50.0% | |
| AGTGCGGTTACAATCAGCGA+TGG | - | chr7.4:6016978-6016997 | None:intergenic | 50.0% | |
| CATGCCAGCTATAGCTAGTG+AGG | + | chr7.4:6015887-6015906 | MS.gene28800:intron | 50.0% | |
| CTGCAATTCGACCAGCAGAA+CGG | - | chr7.4:6016952-6016971 | None:intergenic | 50.0% | |
| GAATTGCTAGCGCAGCATTC+CGG | + | chr7.4:6016627-6016646 | MS.gene28800:CDS | 50.0% | |
| GCGAATGAAGATCCTTCCTC+TGG | + | chr7.4:6015430-6015449 | MS.gene28800:CDS | 50.0% | |
| GCTTCATACTTCACCGGCAT+TGG | - | chr7.4:6017772-6017791 | None:intergenic | 50.0% | |
| GGAATTTGATGTGGCAGAGG+AGG | - | chr7.4:6016781-6016800 | None:intergenic | 50.0% | |
| GGAGGAATTTGATGTGGCAG+AGG | - | chr7.4:6016784-6016803 | None:intergenic | 50.0% | |
| GTGAGAAAGAAGGGCAATGG+AGG | + | chr7.4:6015593-6015612 | MS.gene28800:CDS | 50.0% | |
| GTTCCTTGCTCCGATCGAAT+CGG | + | chr7.4:6015082-6015101 | MS.gene28800:intron | 50.0% | |
| TGCTCTGTGCATGTAGCACT+CGG | - | chr7.4:6016921-6016940 | None:intergenic | 50.0% | |
| TGCTTCGAAGAGTGAAGCTC+TGG | - | chr7.4:6017038-6017057 | None:intergenic | 50.0% | |
| TTCCTACCACCGCAAGATCA+CGG | - | chr7.4:6017720-6017739 | None:intergenic | 50.0% | |
| ! | CTGCCATTTAGGACTGATGG+AGG | + | chr7.4:6016574-6016593 | MS.gene28800:CDS | 50.0% |
| ! | GGTGAAGCATGCTGCCATTT+AGG | + | chr7.4:6016563-6016582 | MS.gene28800:CDS | 50.0% |
| ! | TGGGTGTTCCCGTTCTGAAT+TGG | + | chr7.4:6017291-6017310 | MS.gene28800:CDS | 50.0% |
| ! | TTGGTGGCTCACAAACCGTA+AGG | + | chr7.4:6014967-6014986 | MS.gene28800:CDS | 50.0% |
| !! | GCATTGATTGGAGTTCGACG+TGG | + | chr7.4:6017271-6017290 | MS.gene28800:CDS | 50.0% |
| !! | GTGTGGTGGGTTGTTGGTTT+GGG | - | chr7.4:6016718-6016737 | None:intergenic | 50.0% |
| !! | TGTGGTGGGTTGTTGGTTTG+GGG | - | chr7.4:6016717-6016736 | None:intergenic | 50.0% |
| ACCAGCAGACACTCTCTCTC+CGG | - | chr7.4:6016649-6016668 | None:intergenic | 55.0% | |
| GGCGGAGGAGGAATTTGATG+TGG | - | chr7.4:6016790-6016809 | None:intergenic | 55.0% | |
| GTAAACTTCCCGGTCCAGCA+TGG | + | chr7.4:6017131-6017150 | MS.gene28800:CDS | 55.0% | |
| ! | CTTCCGATTCGATCGGAGCA+AGG | - | chr7.4:6015088-6015107 | None:intergenic | 55.0% |
| ! | GTTTTGCCGTGATCTTGCGG+TGG | + | chr7.4:6017711-6017730 | MS.gene28800:CDS | 55.0% |
| ! | TGAGTAGAGACCAGCGTCGA+GGG | - | chr7.4:6016834-6016853 | None:intergenic | 55.0% |
| ! | TTGGGGTGTCTCCAGCCAAT+GGG | - | chr7.4:6016700-6016719 | None:intergenic | 55.0% |
| ! | TTTGGGGTGTCTCCAGCCAA+TGG | - | chr7.4:6016701-6016720 | None:intergenic | 55.0% |
| !! | GGTAGGAAGCTTGTTGACGC+AGG | + | chr7.4:6017732-6017751 | MS.gene28800:CDS | 55.0% |
| !! | GGTGTGGTGGGTTGTTGGTT+TGG | - | chr7.4:6016719-6016738 | None:intergenic | 55.0% |
| CTGAGTAGAGACCAGCGTCG+AGG | - | chr7.4:6016835-6016854 | None:intergenic | 60.0% | |
| GCATCTGCACACCGTTCTGC+TGG | + | chr7.4:6016938-6016957 | MS.gene28800:CDS | 60.0% | |
| GTGGCGTTTCCATGCTGGAC+CGG | - | chr7.4:6017143-6017162 | None:intergenic | 60.0% | |
| GTTTCGTTGAGAGGGGCTCG+TGG | - | chr7.4:6016743-6016762 | None:intergenic | 60.0% | |
| TGCCGTGATCTTGCGGTGGT+AGG | + | chr7.4:6017715-6017734 | MS.gene28800:CDS | 60.0% | |
| TGGCGTTTCCATGCTGGACC+GGG | - | chr7.4:6017142-6017161 | None:intergenic | 60.0% | |
| TGTGCATGTAGCACTCGGCG+AGG | - | chr7.4:6016916-6016935 | None:intergenic | 60.0% | |
| ! | ACTCGGCGAGGAAGCCTTGT+GGG | - | chr7.4:6016904-6016923 | None:intergenic | 60.0% |
| !! | TCCGGAGAGAGAGTGTCTGC+TGG | + | chr7.4:6016645-6016664 | MS.gene28800:CDS | 60.0% |
| CACTCGGCGAGGAAGCCTTG+TGG | - | chr7.4:6016905-6016924 | None:intergenic | 65.0% | |
| CAGCGAGTGCAGCTGCACGA+CGG | - | chr7.4:6016811-6016830 | None:intergenic | 65.0% | |
| TCGTTGAGAGGGGCTCGTGG+CGG | - | chr7.4:6016740-6016759 | None:intergenic | 65.0% | |
| ! | CTCGGCGAGGAAGCCTTGTG+GGG | - | chr7.4:6016903-6016922 | None:intergenic | 65.0% |
| ! | GGAAGCCTTGTGGGGCAGCA+CGG | - | chr7.4:6016895-6016914 | None:intergenic | 65.0% |
| !! | GTGGCGGTGTGGTGGGTTGT+TGG | - | chr7.4:6016724-6016743 | None:intergenic | 65.0% |
| CGAGTGCAGCTGCACGACGG+CGG | - | chr7.4:6016808-6016827 | None:intergenic | 70.0% | |
| AGGGGCTCGTGGCGGTGTGG+TGG | - | chr7.4:6016732-6016751 | None:intergenic | 75.0% | |
| CAGCTGCACGACGGCGGAGG+AGG | - | chr7.4:6016802-6016821 | None:intergenic | 75.0% | |
| GAGAGGGGCTCGTGGCGGTG+TGG | - | chr7.4:6016735-6016754 | None:intergenic | 75.0% | |
| GCACTCGCTGCCCTCGACGC+TGG | + | chr7.4:6016821-6016840 | MS.gene28800:CDS | 75.0% | |
| GGGGCTCGTGGCGGTGTGGT+GGG | - | chr7.4:6016731-6016750 | None:intergenic | 75.0% | |
| GGTCGCCGTGCTGCCCCACA+AGG | + | chr7.4:6016887-6016906 | MS.gene28800:CDS | 75.0% | |
| GTGCAGCTGCACGACGGCGG+AGG | - | chr7.4:6016805-6016824 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 6014923 | 6017804 | 6014923 | ID=MS.gene28800 |
| chr7.4 | mRNA | 6014923 | 6017804 | 6014923 | ID=MS.gene28800.t1;Parent=MS.gene28800 |
| chr7.4 | exon | 6014923 | 6014988 | 6014923 | ID=MS.gene28800.t1.exon1;Parent=MS.gene28800.t1 |
| chr7.4 | CDS | 6014923 | 6014988 | 6014923 | ID=cds.MS.gene28800.t1;Parent=MS.gene28800.t1 |
| chr7.4 | exon | 6015217 | 6015614 | 6015217 | ID=MS.gene28800.t1.exon2;Parent=MS.gene28800.t1 |
| chr7.4 | CDS | 6015217 | 6015614 | 6015217 | ID=cds.MS.gene28800.t1;Parent=MS.gene28800.t1 |
| chr7.4 | exon | 6016550 | 6017804 | 6016550 | ID=MS.gene28800.t1.exon3;Parent=MS.gene28800.t1 |
| chr7.4 | CDS | 6016550 | 6017804 | 6016550 | ID=cds.MS.gene28800.t1;Parent=MS.gene28800.t1 |
| Gene Sequence |
| Protein sequence |
