Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28805.t1 | AFK49536.1 | 98.5 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 3.30E-108 | 401 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28805.t1 | Q6NZQ8 | 36.9 | 65 | 40 | 1 | 20 | 84 | 80 | 143 | 3.1e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28805.t1 | G7KST0 | 98.5 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 2.4e-108 | 401.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050409 | MS.gene28805 | 0.814297 | 1.66E-51 | -1.69E-46 |
| MS.gene050412 | MS.gene28805 | 0.818317 | 2.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28805.t1 | MTR_7g109460 | 98.515 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 1.36e-147 | 409 |
| MS.gene28805.t1 | MTR_7g109460 | 98.171 | 164 | 3 | 0 | 1 | 164 | 1 | 164 | 2.59e-118 | 333 |
| MS.gene28805.t1 | MTR_1g087150 | 61.881 | 202 | 68 | 2 | 1 | 193 | 1 | 202 | 1.85e-75 | 226 |
| MS.gene28805.t1 | MTR_1g087150 | 60.849 | 212 | 73 | 3 | 1 | 202 | 1 | 212 | 2.70e-75 | 226 |
| MS.gene28805.t1 | MTR_1g108490 | 38.378 | 185 | 104 | 3 | 17 | 194 | 56 | 237 | 4.22e-45 | 150 |
| MS.gene28805.t1 | MTR_1g108490 | 41.935 | 155 | 80 | 3 | 17 | 164 | 56 | 207 | 1.17e-37 | 130 |
| MS.gene28805.t1 | MTR_8g467220 | 38.974 | 195 | 106 | 5 | 9 | 194 | 56 | 246 | 6.55e-36 | 127 |
| MS.gene28805.t1 | MTR_7g082950 | 36.364 | 187 | 106 | 6 | 19 | 200 | 15 | 193 | 9.87e-36 | 125 |
| MS.gene28805.t1 | MTR_5g040650 | 39.153 | 189 | 101 | 6 | 20 | 198 | 70 | 254 | 3.07e-31 | 114 |
| MS.gene28805.t1 | MTR_5g040650 | 37.755 | 196 | 108 | 6 | 9 | 194 | 59 | 250 | 2.03e-30 | 113 |
| MS.gene28805.t1 | MTR_7g082950 | 38.562 | 153 | 83 | 5 | 19 | 166 | 15 | 161 | 5.65e-28 | 103 |
| MS.gene28805.t1 | MTR_7g010610 | 38.318 | 107 | 57 | 4 | 1 | 105 | 16 | 115 | 1.15e-17 | 77.0 |
| MS.gene28805.t1 | MTR_3g053370 | 51.613 | 62 | 6 | 1 | 32 | 93 | 3 | 40 | 3.96e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28805.t1 | AT1G02610 | 50.000 | 198 | 90 | 5 | 1 | 194 | 1 | 193 | 1.10e-59 | 186 |
| MS.gene28805.t1 | AT1G02610 | 50.000 | 198 | 90 | 5 | 1 | 194 | 1 | 193 | 1.58e-59 | 186 |
| MS.gene28805.t1 | AT4G02075 | 49.485 | 194 | 87 | 5 | 1 | 192 | 1 | 185 | 1.02e-53 | 171 |
| MS.gene28805.t1 | AT4G02075 | 48.969 | 194 | 88 | 5 | 1 | 192 | 1 | 185 | 1.32e-53 | 170 |
| MS.gene28805.t1 | AT2G01275 | 41.379 | 174 | 92 | 4 | 16 | 185 | 55 | 222 | 1.08e-43 | 147 |
| MS.gene28805.t1 | AT2G01275 | 41.379 | 174 | 92 | 4 | 16 | 185 | 55 | 222 | 1.08e-43 | 147 |
| MS.gene28805.t1 | AT2G01275 | 41.379 | 174 | 92 | 4 | 16 | 185 | 55 | 222 | 1.08e-43 | 147 |
| MS.gene28805.t1 | AT2G01275 | 42.529 | 174 | 90 | 5 | 16 | 185 | 81 | 248 | 1.16e-43 | 147 |
| MS.gene28805.t1 | AT2G01275 | 42.529 | 174 | 90 | 5 | 16 | 185 | 81 | 248 | 1.16e-43 | 147 |
| MS.gene28805.t1 | AT4G02075 | 48.521 | 169 | 76 | 5 | 1 | 167 | 1 | 160 | 3.48e-43 | 143 |
| MS.gene28805.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.90e-33 | 120 |
| MS.gene28805.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.90e-33 | 120 |
| MS.gene28805.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.90e-33 | 120 |
| MS.gene28805.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.90e-33 | 120 |
| MS.gene28805.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.90e-33 | 120 |
| MS.gene28805.t1 | AT5G38070 | 36.612 | 183 | 93 | 5 | 15 | 186 | 49 | 219 | 3.84e-32 | 117 |
| MS.gene28805.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 5.46e-30 | 112 |
| MS.gene28805.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 5.46e-30 | 112 |
| MS.gene28805.t1 | AT3G47550 | 38.983 | 177 | 93 | 4 | 20 | 186 | 69 | 240 | 5.89e-30 | 111 |
| MS.gene28805.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 7.33e-28 | 107 |
| MS.gene28805.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 7.33e-28 | 107 |
| MS.gene28805.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 91 | 271 | 1.11e-27 | 106 |
| MS.gene28805.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 7.25e-27 | 103 |
| MS.gene28805.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 7.25e-27 | 103 |
| MS.gene28805.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 7.25e-27 | 103 |
| MS.gene28805.t1 | AT2G02960 | 43.066 | 137 | 68 | 3 | 20 | 149 | 43 | 176 | 3.11e-26 | 102 |
| MS.gene28805.t1 | AT3G47550 | 42.623 | 122 | 56 | 3 | 20 | 132 | 69 | 185 | 3.19e-23 | 93.2 |
| MS.gene28805.t1 | AT1G02610 | 37.209 | 129 | 74 | 4 | 70 | 194 | 2 | 127 | 3.88e-19 | 80.5 |
Find 40 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTAATCGATGATTTA+AGG | 0.215992 | 7.4:-5936796 | MS.gene28805:CDS |
| CTTACGTTAAGAAGTGTAAA+TGG | 0.222088 | 7.4:+5934771 | None:intergenic |
| GAAGCACCTTGTTCTTGTTC+TGG | 0.299149 | 7.4:-5936707 | MS.gene28805:CDS |
| CGCGTTTCACTGTCGATCAT+TGG | 0.320595 | 7.4:-5935573 | MS.gene28805:CDS |
| ACAAGAACAAGGTGCTTCTA+AGG | 0.336965 | 7.4:+5936712 | None:intergenic |
| ACAAGGTGCTTCTAAGGCTT+TGG | 0.357018 | 7.4:+5936718 | None:intergenic |
| GTTGTAGGTCATTGTTCTAA+AGG | 0.358971 | 7.4:-5934648 | MS.gene28805:intron |
| AGCTTTCAAACTCTTCTTCA+TGG | 0.379338 | 7.4:+5936741 | None:intergenic |
| TTCTTGTTCTGGAACTGTTA+AGG | 0.379888 | 7.4:-5936696 | MS.gene28805:intron |
| TAGTGGTAGAGCTGCATTCC+GGG | 0.387977 | 7.4:+5935603 | None:intergenic |
| TTAGTGGTAGAGCTGCATTC+CGG | 0.388354 | 7.4:+5935602 | None:intergenic |
| TGGAGGAGGAGCTGTATATC+CGG | 0.422547 | 7.4:+5935989 | None:intergenic |
| GTTACTAGTAAGACATTGTT+TGG | 0.431240 | 7.4:-5934823 | MS.gene28805:CDS |
| AACGCGGTAAAGTACCTTAT+GGG | 0.451704 | 7.4:+5935936 | None:intergenic |
| TAATCTTCGGTTCCACTTGT+GGG | 0.462880 | 7.4:+5934795 | None:intergenic |
| ATGATGAAGCAATGCCCATA+AGG | 0.464358 | 7.4:-5935950 | MS.gene28805:intron |
| GTGAAACGCGGTTCTGTTAG+TGG | 0.469197 | 7.4:+5935586 | None:intergenic |
| GAGCCATTCTGAATAGCATT+AGG | 0.470162 | 7.4:-5934580 | MS.gene28805:CDS |
| GTAATCTTCGGTTCCACTTG+TGG | 0.490070 | 7.4:+5934794 | None:intergenic |
| CAGAATGGCTCCGATTGTCT+TGG | 0.492886 | 7.4:+5934592 | None:intergenic |
| TACATAGTTACCAAGACAAT+CGG | 0.492892 | 7.4:-5934602 | MS.gene28805:CDS |
| AATAGCATTAGGCGCTATCA+AGG | 0.494672 | 7.4:-5934569 | MS.gene28805:CDS |
| TGTCTTGGTAACTATGTACA+TGG | 0.500550 | 7.4:+5934607 | None:intergenic |
| TTACGTTAAGAAGTGTAAAT+GGG | 0.501093 | 7.4:+5934772 | None:intergenic |
| AAGTGTAAATGGGTAATCTT+CGG | 0.501901 | 7.4:+5934782 | None:intergenic |
| CAAAGATGGTGTAACGAGAA+AGG | 0.507130 | 7.4:-5936514 | MS.gene28805:CDS |
| GATGATTTAAGGTTACTCTC+TGG | 0.510571 | 7.4:-5936785 | MS.gene28805:CDS |
| GGAGGAGGAGCTGTATATCC+GGG | 0.519973 | 7.4:+5935990 | None:intergenic |
| ATAGAGATTGCATACAAAGA+TGG | 0.547272 | 7.4:-5936528 | MS.gene28805:CDS |
| AACATGTGAAATATGTCTCC+AGG | 0.548388 | 7.4:-5936485 | MS.gene28805:intron |
| GTCATTGTTCTAAAGGCTTG+CGG | 0.555397 | 7.4:-5934641 | MS.gene28805:CDS |
| GCGCCTAATGCTATTCAGAA+TGG | 0.556703 | 7.4:+5934577 | None:intergenic |
| TGTAATAGAAAGTGATTACC+CGG | 0.600485 | 7.4:-5935621 | MS.gene28805:CDS |
| TGTTTGGTAGTGCCCACAAG+TGG | 0.604389 | 7.4:-5934807 | MS.gene28805:CDS |
| ATAAGAGAAAGTGAGGTGGA+AGG | 0.645126 | 7.4:-5935647 | MS.gene28805:CDS |
| AAACGCGATAAGAGAAAGTG+AGG | 0.650705 | 7.4:-5935654 | MS.gene28805:CDS |
| CGCGATAAGAGAAAGTGAGG+TGG | 0.650995 | 7.4:-5935651 | MS.gene28805:CDS |
| GTCTTGGTAACTATGTACAT+GGG | 0.665639 | 7.4:+5934608 | None:intergenic |
| CAATGATCGACAGTGAAACG+CGG | 0.703113 | 7.4:+5935574 | None:intergenic |
| ACAGTTCCAGAACAAGAACA+AGG | 0.719305 | 7.4:+5936701 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAACACATTTAAT+TGG | - | chr7.4:5935606-5935625 | MS.gene28805:CDS | 10.0% |
| !! | TTTCATTCAAAATTAAAATA+CGG | + | chr7.4:5936621-5936640 | None:intergenic | 10.0% |
| !! | AATAGAAAGAAAAAATAAAG+AGG | - | chr7.4:5935021-5935040 | MS.gene28805:intron | 15.0% |
| !! | ATAGAAAGAAAAAATAAAGA+GGG | - | chr7.4:5935022-5935041 | MS.gene28805:intron | 15.0% |
| !! | ATATAAGTCAAAATTAGATT+GGG | + | chr7.4:5935122-5935141 | None:intergenic | 15.0% |
| !! | TATATAAGTCAAAATTAGAT+TGG | + | chr7.4:5935123-5935142 | None:intergenic | 15.0% |
| !!! | AAAAACTGTAAGTTATTTTT+CGG | + | chr7.4:5936490-5936509 | None:intergenic | 15.0% |
| !!! | AAATTTGATAACACATTTTA+AGG | - | chr7.4:5935659-5935678 | MS.gene28805:CDS | 15.0% |
| !!! | AATTTGATAACACATTTTAA+GGG | - | chr7.4:5935660-5935679 | MS.gene28805:CDS | 15.0% |
| !!! | GTATTTTAATTTTGAATGAA+AGG | - | chr7.4:5936620-5936639 | MS.gene28805:intron | 15.0% |
| !! | AAATAAAGTTGCATGAATTT+AGG | - | chr7.4:5935924-5935943 | MS.gene28805:intron | 20.0% |
| !! | AATAAAGTTGCATGAATTTA+GGG | - | chr7.4:5935925-5935944 | MS.gene28805:intron | 20.0% |
| !! | GCATGATAAATATAAAAGAT+GGG | - | chr7.4:5935290-5935309 | MS.gene28805:intron | 20.0% |
| !! | TGCATGATAAATATAAAAGA+TGG | - | chr7.4:5935289-5935308 | MS.gene28805:intron | 20.0% |
| !!! | ATTTGATAACACATTTTAAG+GGG | - | chr7.4:5935661-5935680 | MS.gene28805:CDS | 20.0% |
| !!! | TCATTTATCTCTGATTTTTT+TGG | + | chr7.4:5935387-5935406 | None:intergenic | 20.0% |
| !!! | TTTGTTATATAAACTCTTCT+AGG | + | chr7.4:5936025-5936044 | None:intergenic | 20.0% |
| ! | AATTATGTTGTGACGTAAAT+TGG | - | chr7.4:5935088-5935107 | MS.gene28805:intron | 25.0% |
| ! | TGTTACTAATCGATGATTTA+AGG | - | chr7.4:5934557-5934576 | MS.gene28805:CDS | 25.0% |
| !! | ACGATTACTTTCAAACTTTT+AGG | - | chr7.4:5936228-5936247 | MS.gene28805:intron | 25.0% |
| !! | AGAAAACAATACACGTTTTT+GGG | + | chr7.4:5936117-5936136 | None:intergenic | 25.0% |
| !! | TAATGCTATGCTATTTGATT+AGG | + | chr7.4:5935864-5935883 | None:intergenic | 25.0% |
| !! | TAGAAAACAATACACGTTTT+TGG | + | chr7.4:5936118-5936137 | None:intergenic | 25.0% |
| !! | TTACGTTAAGAAGTGTAAAT+GGG | + | chr7.4:5936584-5936603 | None:intergenic | 25.0% |
| !! | TTTAATTTAACCTGCAGTTA+GGG | - | chr7.4:5936386-5936405 | MS.gene28805:intron | 25.0% |
| !!! | CTTTTTGATTGAATTAAACG+CGG | + | chr7.4:5935436-5935455 | None:intergenic | 25.0% |
| !!! | TTTATCTCTGATTTTTTTGG+AGG | + | chr7.4:5935384-5935403 | None:intergenic | 25.0% |
| !!! | TTTGATAACACATTTTAAGG+GGG | - | chr7.4:5935662-5935681 | MS.gene28805:CDS | 25.0% |
| !!! | TTTTTTTAGACATGAAAGCA+TGG | + | chr7.4:5936341-5936360 | None:intergenic | 25.0% |
| AAGTGTAAATGGGTAATCTT+CGG | + | chr7.4:5936574-5936593 | None:intergenic | 30.0% | |
| ATAGAGATTGCATACAAAGA+TGG | - | chr7.4:5934825-5934844 | MS.gene28805:CDS | 30.0% | |
| GTTACTAGTAAGACATTGTT+TGG | - | chr7.4:5936530-5936549 | MS.gene28805:CDS | 30.0% | |
| TAATCATCATCATACATACC+TGG | + | chr7.4:5934889-5934908 | None:intergenic | 30.0% | |
| TACATAGTTACCAAGACAAT+CGG | - | chr7.4:5936751-5936770 | MS.gene28805:CDS | 30.0% | |
| TATTAAGTCTTAGCTACACA+TGG | - | chr7.4:5935494-5935513 | MS.gene28805:intron | 30.0% | |
| TGTAATAGAAAGTGATTACC+CGG | - | chr7.4:5935732-5935751 | MS.gene28805:intron | 30.0% | |
| TTCATCAAATGCCATTAGTA+CGG | + | chr7.4:5936677-5936696 | None:intergenic | 30.0% | |
| ! | CTTACGTTAAGAAGTGTAAA+TGG | + | chr7.4:5936585-5936604 | None:intergenic | 30.0% |
| ! | CTTTAATTTAACCTGCAGTT+AGG | - | chr7.4:5936385-5936404 | MS.gene28805:intron | 30.0% |
| !! | TCAAACTTTTAGGTCACATT+TGG | - | chr7.4:5936238-5936257 | MS.gene28805:intron | 30.0% |
| !! | TGATGAACTACTTTTGTTGT+AGG | - | chr7.4:5936690-5936709 | MS.gene28805:intron | 30.0% |
| !! | TTGATAACACATTTTAAGGG+GGG | - | chr7.4:5935663-5935682 | MS.gene28805:CDS | 30.0% |
| AACATGTGAAATATGTCTCC+AGG | - | chr7.4:5934868-5934887 | MS.gene28805:intron | 35.0% | |
| AGCTTTCAAACTCTTCTTCA+TGG | + | chr7.4:5934615-5934634 | None:intergenic | 35.0% | |
| ATGTTGTGACGTAAATTGGA+TGG | - | chr7.4:5935092-5935111 | MS.gene28805:intron | 35.0% | |
| CATGCAATGATGTATTCTGT+AGG | - | chr7.4:5936460-5936479 | MS.gene28805:intron | 35.0% | |
| CTGAACTACTAGTACATAGT+CGG | + | chr7.4:5936291-5936310 | None:intergenic | 35.0% | |
| GAAGCTGGTCAAATTAAAAC+TGG | - | chr7.4:5936427-5936446 | MS.gene28805:intron | 35.0% | |
| GTTGTAGGTCATTGTTCTAA+AGG | - | chr7.4:5936705-5936724 | MS.gene28805:CDS | 35.0% | |
| TAGGGAAAATAACGAGTCAA+GGG | - | chr7.4:5935943-5935962 | MS.gene28805:intron | 35.0% | |
| TGTTGTGACGTAAATTGGAT+GGG | - | chr7.4:5935093-5935112 | MS.gene28805:intron | 35.0% | |
| TTAGGGAAAATAACGAGTCA+AGG | - | chr7.4:5935942-5935961 | MS.gene28805:intron | 35.0% | |
| ! | GATGATTTAAGGTTACTCTC+TGG | - | chr7.4:5934568-5934587 | MS.gene28805:CDS | 35.0% |
| ! | GGTGCAACTATTTTATACGT+TGG | - | chr7.4:5935523-5935542 | MS.gene28805:intron | 35.0% |
| ! | GTCTTGGTAACTATGTACAT+GGG | + | chr7.4:5936748-5936767 | None:intergenic | 35.0% |
| ! | TGTCTTGGTAACTATGTACA+TGG | + | chr7.4:5936749-5936768 | None:intergenic | 35.0% |
| ! | TTTTTGCAGCAATATGAACC+CGG | - | chr7.4:5935345-5935364 | MS.gene28805:intron | 35.0% |
| !! | TTCTTGTTCTGGAACTGTTA+AGG | - | chr7.4:5934657-5934676 | MS.gene28805:intron | 35.0% |
| !!! | ATCTCTGATTTTTTTGGAGG+AGG | + | chr7.4:5935381-5935400 | None:intergenic | 35.0% |
| AAACGCGATAAGAGAAAGTG+AGG | - | chr7.4:5935699-5935718 | MS.gene28805:intron | 40.0% | |
| AATAGCATTAGGCGCTATCA+AGG | - | chr7.4:5936784-5936803 | MS.gene28805:CDS | 40.0% | |
| ACAGTTCCAGAACAAGAACA+AGG | + | chr7.4:5934655-5934674 | None:intergenic | 40.0% | |
| ACCAGGAAAATGCTTTCACA+AGG | + | chr7.4:5936077-5936096 | None:intergenic | 40.0% | |
| ATAAGAGAAAGTGAGGTGGA+AGG | - | chr7.4:5935706-5935725 | MS.gene28805:intron | 40.0% | |
| ATGATGAAGCAATGCCCATA+AGG | - | chr7.4:5935403-5935422 | MS.gene28805:intron | 40.0% | |
| CAAAGATGGTGTAACGAGAA+AGG | - | chr7.4:5934839-5934858 | MS.gene28805:intron | 40.0% | |
| GACCAGCTTCAATATCAGTT+GGG | + | chr7.4:5936417-5936436 | None:intergenic | 40.0% | |
| GAGCCATTCTGAATAGCATT+AGG | - | chr7.4:5936773-5936792 | MS.gene28805:CDS | 40.0% | |
| GTTGAATTGTCATTGCCAAC+TGG | - | chr7.4:5935972-5935991 | MS.gene28805:CDS | 40.0% | |
| TAATCTTCGGTTCCACTTGT+GGG | + | chr7.4:5936561-5936580 | None:intergenic | 40.0% | |
| TGACCAGCTTCAATATCAGT+TGG | + | chr7.4:5936418-5936437 | None:intergenic | 40.0% | |
| TTCCCAACTGATATTGAAGC+TGG | - | chr7.4:5936412-5936431 | MS.gene28805:intron | 40.0% | |
| ! | AAACGCGGTAAAGTACCTTA+TGG | + | chr7.4:5935421-5935440 | None:intergenic | 40.0% |
| ! | AACGCGGTAAAGTACCTTAT+GGG | + | chr7.4:5935420-5935439 | None:intergenic | 40.0% |
| ! | ACAAGAACAAGGTGCTTCTA+AGG | + | chr7.4:5934644-5934663 | None:intergenic | 40.0% |
| ! | ACATGAAAGCATGGTGTTTG+TGG | + | chr7.4:5936332-5936351 | None:intergenic | 40.0% |
| ! | CATGAAAGCATGGTGTTTGT+GGG | + | chr7.4:5936331-5936350 | None:intergenic | 40.0% |
| !! | ACACGTATTTTGCTGTCGTT+AGG | - | chr7.4:5935065-5935084 | MS.gene28805:intron | 40.0% |
| !! | GTCATTGTTCTAAAGGCTTG+CGG | - | chr7.4:5936712-5936731 | MS.gene28805:CDS | 40.0% |
| !!! | ACCTTGTGAAAGCATTTTCC+TGG | - | chr7.4:5936073-5936092 | MS.gene28805:intron | 40.0% |
| AGTCTTAGCTACACATGGCA+TGG | - | chr7.4:5935499-5935518 | MS.gene28805:intron | 45.0% | |
| CAATGATCGACAGTGAAACG+CGG | + | chr7.4:5935782-5935801 | None:intergenic | 45.0% | |
| CCATTAGTACGGCTGTATGT+AGG | + | chr7.4:5936666-5936685 | None:intergenic | 45.0% | |
| CCTACATACAGCCGTACTAA+TGG | - | chr7.4:5936663-5936682 | MS.gene28805:intron | 45.0% | |
| GCGCCTAATGCTATTCAGAA+TGG | + | chr7.4:5936779-5936798 | None:intergenic | 45.0% | |
| GGGAGAAAGAGTTATCTGTG+AGG | - | chr7.4:5935042-5935061 | MS.gene28805:intron | 45.0% | |
| GTAATCTTCGGTTCCACTTG+TGG | + | chr7.4:5936562-5936581 | None:intergenic | 45.0% | |
| TTAGTGGTAGAGCTGCATTC+CGG | + | chr7.4:5935754-5935773 | None:intergenic | 45.0% | |
| TTGGGAAAAACCCTAACTGC+AGG | + | chr7.4:5936399-5936418 | None:intergenic | 45.0% | |
| ! | GAAGCACCTTGTTCTTGTTC+TGG | - | chr7.4:5934646-5934665 | MS.gene28805:intron | 45.0% |
| !! | ACAAGGTGCTTCTAAGGCTT+TGG | + | chr7.4:5934638-5934657 | None:intergenic | 45.0% |
| ATGCCAATTGCCCCAACACA+AGG | - | chr7.4:5935996-5936015 | MS.gene28805:CDS | 50.0% | |
| CAGAATGGCTCCGATTGTCT+TGG | + | chr7.4:5936764-5936783 | None:intergenic | 50.0% | |
| CGCGATAAGAGAAAGTGAGG+TGG | - | chr7.4:5935702-5935721 | MS.gene28805:intron | 50.0% | |
| CGCGTTTCACTGTCGATCAT+TGG | - | chr7.4:5935780-5935799 | MS.gene28805:intron | 50.0% | |
| CTTAGCTACACATGGCATGG+AGG | - | chr7.4:5935502-5935521 | MS.gene28805:intron | 50.0% | |
| GTGAAACGCGGTTCTGTTAG+TGG | + | chr7.4:5935770-5935789 | None:intergenic | 50.0% | |
| TAGTGGTAGAGCTGCATTCC+GGG | + | chr7.4:5935753-5935772 | None:intergenic | 50.0% | |
| TGCCAATTGCCCCAACACAA+GGG | - | chr7.4:5935997-5936016 | MS.gene28805:CDS | 50.0% | |
| TGGAGGAGGAGCTGTATATC+CGG | + | chr7.4:5935367-5935386 | None:intergenic | 50.0% | |
| ! | CTTCTAGGAGCCCTTGTGTT+GGG | + | chr7.4:5936010-5936029 | None:intergenic | 50.0% |
| ! | TCTTCTAGGAGCCCTTGTGT+TGG | + | chr7.4:5936011-5936030 | None:intergenic | 50.0% |
| ! | TTCTAGGAGCCCTTGTGTTG+GGG | + | chr7.4:5936009-5936028 | None:intergenic | 50.0% |
| !! | TGTTTGGTAGTGCCCACAAG+TGG | - | chr7.4:5936546-5936565 | MS.gene28805:intron | 50.0% |
| AGAGTCGTGACTCGTGTACC+AGG | + | chr7.4:5936094-5936113 | None:intergenic | 55.0% | |
| AGCCCTTGTGTTGGGGCAAT+TGG | + | chr7.4:5936002-5936021 | None:intergenic | 55.0% | |
| GGAGGAGGAGCTGTATATCC+GGG | + | chr7.4:5935366-5935385 | None:intergenic | 55.0% | |
| GGGGCAATTGGCATTCCAGT+TGG | + | chr7.4:5935990-5936009 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 5934544 | 5936831 | 5934544 | ID=MS.gene28805 |
| chr7.4 | mRNA | 5934544 | 5936831 | 5934544 | ID=MS.gene28805.t1;Parent=MS.gene28805 |
| chr7.4 | exon | 5936697 | 5936831 | 5936697 | ID=MS.gene28805.t1.exon1;Parent=MS.gene28805.t1 |
| chr7.4 | CDS | 5936697 | 5936831 | 5936697 | ID=cds.MS.gene28805.t1;Parent=MS.gene28805.t1 |
| chr7.4 | exon | 5936486 | 5936557 | 5936486 | ID=MS.gene28805.t1.exon2;Parent=MS.gene28805.t1 |
| chr7.4 | CDS | 5936486 | 5936557 | 5936486 | ID=cds.MS.gene28805.t1;Parent=MS.gene28805.t1 |
| chr7.4 | exon | 5935951 | 5936021 | 5935951 | ID=MS.gene28805.t1.exon3;Parent=MS.gene28805.t1 |
| chr7.4 | CDS | 5935951 | 5936021 | 5935951 | ID=cds.MS.gene28805.t1;Parent=MS.gene28805.t1 |
| chr7.4 | exon | 5935565 | 5935694 | 5935565 | ID=MS.gene28805.t1.exon4;Parent=MS.gene28805.t1 |
| chr7.4 | CDS | 5935565 | 5935694 | 5935565 | ID=cds.MS.gene28805.t1;Parent=MS.gene28805.t1 |
| chr7.4 | exon | 5934776 | 5934856 | 5934776 | ID=MS.gene28805.t1.exon5;Parent=MS.gene28805.t1 |
| chr7.4 | CDS | 5934776 | 5934856 | 5934776 | ID=cds.MS.gene28805.t1;Parent=MS.gene28805.t1 |
| chr7.4 | exon | 5934544 | 5934663 | 5934544 | ID=MS.gene28805.t1.exon6;Parent=MS.gene28805.t1 |
| chr7.4 | CDS | 5934544 | 5934663 | 5934544 | ID=cds.MS.gene28805.t1;Parent=MS.gene28805.t1 |
| Gene Sequence |
| Protein sequence |
