Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050412.t1 | AFK49536.1 | 99 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 1.50E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050412.t1 | G7KST0 | 99.0 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 1.1e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050409 | MS.gene050412 | 0.995638 | 2.59E-218 | -1.69E-46 |
| MS.gene050410 | MS.gene050412 | 0.905224 | 5.38E-80 | -1.69E-46 |
| MS.gene050412 | MS.gene07045 | 0.951948 | 6.92E-110 | -1.69E-46 |
| MS.gene050412 | MS.gene07046 | 0.994734 | 9.66E-210 | -1.69E-46 |
| MS.gene050412 | MS.gene07049 | 0.942853 | 3.43E-102 | -1.69E-46 |
| MS.gene050412 | MS.gene28805 | 0.818317 | 2.09E-52 | -1.69E-46 |
| MS.gene050412 | MS.gene51206 | 0.814578 | 1.43E-51 | -1.69E-46 |
| MS.gene050412 | MS.gene81108 | 0.802694 | 4.97E-49 | -1.69E-46 |
| MS.gene050412 | MS.gene96813 | 0.822483 | 2.31E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050412.t1 | MTR_7g109460 | 99.010 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 2.96e-148 | 410 |
| MS.gene050412.t1 | MTR_7g109460 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 4.89e-119 | 335 |
| MS.gene050412.t1 | MTR_1g087150 | 62.376 | 202 | 67 | 2 | 1 | 193 | 1 | 202 | 3.76e-76 | 228 |
| MS.gene050412.t1 | MTR_1g087150 | 61.321 | 212 | 72 | 3 | 1 | 202 | 1 | 212 | 5.42e-76 | 228 |
| MS.gene050412.t1 | MTR_1g108490 | 38.378 | 185 | 104 | 3 | 17 | 194 | 56 | 237 | 2.23e-45 | 151 |
| MS.gene050412.t1 | MTR_1g108490 | 41.935 | 155 | 80 | 3 | 17 | 164 | 56 | 207 | 6.73e-38 | 130 |
| MS.gene050412.t1 | MTR_7g082950 | 36.364 | 187 | 106 | 6 | 19 | 200 | 15 | 193 | 4.95e-36 | 125 |
| MS.gene050412.t1 | MTR_8g467220 | 38.974 | 195 | 106 | 5 | 9 | 194 | 56 | 246 | 5.12e-36 | 127 |
| MS.gene050412.t1 | MTR_5g040650 | 39.153 | 189 | 101 | 6 | 20 | 198 | 70 | 254 | 2.36e-31 | 115 |
| MS.gene050412.t1 | MTR_5g040650 | 37.755 | 196 | 108 | 6 | 9 | 194 | 59 | 250 | 1.51e-30 | 113 |
| MS.gene050412.t1 | MTR_7g082950 | 38.562 | 153 | 83 | 5 | 19 | 166 | 15 | 161 | 3.27e-28 | 104 |
| MS.gene050412.t1 | MTR_7g010610 | 38.318 | 107 | 57 | 4 | 1 | 105 | 16 | 115 | 1.01e-17 | 77.4 |
| MS.gene050412.t1 | MTR_3g053370 | 51.613 | 62 | 6 | 1 | 32 | 93 | 3 | 40 | 3.53e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050412.t1 | AT1G02610 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 2.75e-60 | 187 |
| MS.gene050412.t1 | AT1G02610 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 3.58e-60 | 187 |
| MS.gene050412.t1 | AT4G02075 | 50.000 | 194 | 86 | 5 | 1 | 192 | 1 | 185 | 2.32e-54 | 172 |
| MS.gene050412.t1 | AT4G02075 | 49.485 | 194 | 87 | 5 | 1 | 192 | 1 | 185 | 3.69e-54 | 171 |
| MS.gene050412.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.58e-44 | 149 |
| MS.gene050412.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.58e-44 | 149 |
| MS.gene050412.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene050412.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene050412.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene050412.t1 | AT4G02075 | 49.704 | 169 | 74 | 5 | 1 | 167 | 1 | 160 | 7.61e-44 | 144 |
| MS.gene050412.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene050412.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene050412.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene050412.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene050412.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene050412.t1 | AT5G38070 | 36.612 | 183 | 93 | 5 | 15 | 186 | 49 | 219 | 1.94e-32 | 117 |
| MS.gene050412.t1 | AT3G47550 | 38.983 | 177 | 93 | 4 | 20 | 186 | 69 | 240 | 3.11e-30 | 112 |
| MS.gene050412.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 3.50e-30 | 112 |
| MS.gene050412.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 3.50e-30 | 112 |
| MS.gene050412.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 4.00e-28 | 107 |
| MS.gene050412.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 4.00e-28 | 107 |
| MS.gene050412.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 91 | 271 | 5.55e-28 | 107 |
| MS.gene050412.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene050412.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene050412.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene050412.t1 | AT2G02960 | 43.066 | 137 | 68 | 3 | 20 | 149 | 43 | 176 | 3.02e-26 | 102 |
| MS.gene050412.t1 | AT3G47550 | 42.623 | 122 | 56 | 3 | 20 | 132 | 69 | 185 | 2.48e-23 | 93.6 |
| MS.gene050412.t1 | AT1G02610 | 37.984 | 129 | 73 | 4 | 70 | 194 | 2 | 127 | 9.39e-20 | 82.0 |
Find 40 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTAATCGATGATTTA+AGG | 0.215992 | 7.1:-4781731 | MS.gene050412:CDS |
| CTTACGGTAAGAAGTGTAAA+TGG | 0.234459 | 7.1:+4779628 | None:intergenic |
| GAAGCACCTTGTTCTTGTTC+TGG | 0.299149 | 7.1:-4781642 | MS.gene050412:CDS |
| CGCGTTTCACTGTCGATCAT+TGG | 0.320595 | 7.1:-4780430 | MS.gene050412:CDS |
| ACAAGAACAAGGTGCTTCTA+AGG | 0.336965 | 7.1:+4781647 | None:intergenic |
| ACAAGGTGCTTCTAAGGCTT+TGG | 0.357018 | 7.1:+4781653 | None:intergenic |
| GTTGTAGGTCATTGTTCTAA+AGG | 0.358971 | 7.1:-4779505 | MS.gene050412:intron |
| AGCTTTCAAACTCTTCTTCA+TGG | 0.379338 | 7.1:+4781676 | None:intergenic |
| TTCTTGTTCTGGAACTGTTA+AGG | 0.379888 | 7.1:-4781631 | MS.gene050412:intron |
| TAGTGGTAGAGCTGCATTCC+GGG | 0.387977 | 7.1:+4780460 | None:intergenic |
| TTAGTGGTAGAGCTGCATTC+CGG | 0.388354 | 7.1:+4780459 | None:intergenic |
| TGGAGGAGGAGCTGTATATC+CGG | 0.422547 | 7.1:+4780844 | None:intergenic |
| GTTACTAGTAAGACATTGTT+TGG | 0.431240 | 7.1:-4779680 | MS.gene050412:CDS |
| AACGCGGTAAAGTACCTTAT+GGG | 0.451704 | 7.1:+4780791 | None:intergenic |
| TAATCTTCGGTTCCACTTGT+GGG | 0.462880 | 7.1:+4779652 | None:intergenic |
| ATGATGAAGCAATGCCCATA+AGG | 0.464358 | 7.1:-4780805 | MS.gene050412:intron |
| GTGAAACGCGGTTCTGTTAG+TGG | 0.469197 | 7.1:+4780443 | None:intergenic |
| GAGCCATTCTGAATAGCATT+AGG | 0.470162 | 7.1:-4779437 | MS.gene050412:CDS |
| GTAATCTTCGGTTCCACTTG+TGG | 0.490070 | 7.1:+4779651 | None:intergenic |
| CAGAATGGCTCCGATTGTCT+TGG | 0.492886 | 7.1:+4779449 | None:intergenic |
| TACATAGTTACCAAGACAAT+CGG | 0.492892 | 7.1:-4779459 | MS.gene050412:CDS |
| AATAGCATTAGGCGCTATCA+AGG | 0.494672 | 7.1:-4779426 | MS.gene050412:CDS |
| TGTCTTGGTAACTATGTACA+TGG | 0.500550 | 7.1:+4779464 | None:intergenic |
| AAGTGTAAATGGGTAATCTT+CGG | 0.501901 | 7.1:+4779639 | None:intergenic |
| CAAAGATGGTGTAACGAGAA+AGG | 0.507130 | 7.1:-4781449 | MS.gene050412:CDS |
| GATGATTTAAGGTTACTCTC+TGG | 0.510571 | 7.1:-4781720 | MS.gene050412:CDS |
| GGAGGAGGAGCTGTATATCC+GGG | 0.519973 | 7.1:+4780845 | None:intergenic |
| TTACGGTAAGAAGTGTAAAT+GGG | 0.521582 | 7.1:+4779629 | None:intergenic |
| ATAGAGATTGCATACAAAGA+TGG | 0.547272 | 7.1:-4781463 | MS.gene050412:CDS |
| AACATGTGAAATATGTCTCC+AGG | 0.548388 | 7.1:-4781420 | MS.gene050412:intron |
| GTCATTGTTCTAAAGGCTTG+CGG | 0.555397 | 7.1:-4779498 | MS.gene050412:CDS |
| GCGCCTAATGCTATTCAGAA+TGG | 0.556703 | 7.1:+4779434 | None:intergenic |
| TGTAATAGAAAGTGATTACC+CGG | 0.600485 | 7.1:-4780478 | MS.gene050412:CDS |
| TGTTTGGTAGTGCCCACAAG+TGG | 0.604389 | 7.1:-4779664 | MS.gene050412:CDS |
| ATAAGAGAAAGTGAGGTGGA+AGG | 0.645126 | 7.1:-4780504 | MS.gene050412:CDS |
| AAACGCGATAAGAGAAAGTG+AGG | 0.650705 | 7.1:-4780511 | MS.gene050412:CDS |
| CGCGATAAGAGAAAGTGAGG+TGG | 0.650995 | 7.1:-4780508 | MS.gene050412:CDS |
| GTCTTGGTAACTATGTACAT+GGG | 0.665639 | 7.1:+4779465 | None:intergenic |
| CAATGATCGACAGTGAAACG+CGG | 0.703113 | 7.1:+4780431 | None:intergenic |
| ACAGTTCCAGAACAAGAACA+AGG | 0.719305 | 7.1:+4781636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAACACATTTAAT+TGG | - | chr7.1:4780541-4780560 | MS.gene050412:intron | 10.0% |
| !! | TTTCATTCAAAATTAAAATA+CGG | + | chr7.1:4781556-4781575 | None:intergenic | 10.0% |
| !! | AATAGAAAGAAAAAATAAAG+AGG | - | chr7.1:4779874-4779893 | MS.gene050412:intron | 15.0% |
| !! | ATAGAAAGAAAAAATAAAGA+GGG | - | chr7.1:4779875-4779894 | MS.gene050412:intron | 15.0% |
| !! | ATATAAGTCAAAATTAGATT+GGG | + | chr7.1:4779975-4779994 | None:intergenic | 15.0% |
| !! | CTACAAATTATAATATCAAA+TGG | + | chr7.1:4780145-4780164 | None:intergenic | 15.0% |
| !! | TATATAAGTCAAAATTAGAT+TGG | + | chr7.1:4779976-4779995 | None:intergenic | 15.0% |
| !!! | AAAAACTGTAAGTTATTTTT+CGG | + | chr7.1:4781425-4781444 | None:intergenic | 15.0% |
| !!! | AAATTTGATAACACATTTTA+AGG | - | chr7.1:4780594-4780613 | MS.gene050412:intron | 15.0% |
| !!! | AATTTGATAACACATTTTAA+GGG | - | chr7.1:4780595-4780614 | MS.gene050412:intron | 15.0% |
| !!! | CATTTGATATTATAATTTGT+AGG | - | chr7.1:4780143-4780162 | MS.gene050412:intron | 15.0% |
| !!! | GTATTTTAATTTTGAATGAA+AGG | - | chr7.1:4781555-4781574 | MS.gene050412:intron | 15.0% |
| !! | AAATAAAGTTGCATGAATTT+AGG | - | chr7.1:4780859-4780878 | MS.gene050412:intron | 20.0% |
| !! | AATAAAGTTGCATGAATTTA+GGG | - | chr7.1:4780860-4780879 | MS.gene050412:intron | 20.0% |
| !! | GCATGATAAATATAAAAGAT+GGG | - | chr7.1:4780227-4780246 | MS.gene050412:intron | 20.0% |
| !! | TGCATGATAAATATAAAAGA+TGG | - | chr7.1:4780226-4780245 | MS.gene050412:intron | 20.0% |
| !!! | ATTTGATAACACATTTTAAG+GGG | - | chr7.1:4780596-4780615 | MS.gene050412:intron | 20.0% |
| !!! | TATAATTTGTAGGAATTATC+AGG | - | chr7.1:4780153-4780172 | MS.gene050412:intron | 20.0% |
| !!! | TCATTTATCTCTGATTTTTT+TGG | + | chr7.1:4780324-4780343 | None:intergenic | 20.0% |
| !!! | TTTGTTATATAAACTCTTCT+AGG | + | chr7.1:4780960-4780979 | None:intergenic | 20.0% |
| ! | AATTATGTTGTGACGTAAAT+TGG | - | chr7.1:4779941-4779960 | MS.gene050412:intron | 25.0% |
| ! | GAAATGAAGATAGAACTAAA+GGG | + | chr7.1:4780123-4780142 | None:intergenic | 25.0% |
| ! | TGTTACTAATCGATGATTTA+AGG | - | chr7.1:4779414-4779433 | MS.gene050412:CDS | 25.0% |
| ! | TTAAATTTCTCAGCTAATCA+TGG | - | chr7.1:4780097-4780116 | MS.gene050412:intron | 25.0% |
| ! | TTATGTTCATTGTATGCATA+AGG | + | chr7.1:4780189-4780208 | None:intergenic | 25.0% |
| ! | TTCATAAAATGCCATTAGTA+CGG | + | chr7.1:4781612-4781631 | None:intergenic | 25.0% |
| !! | ACGATTACTTTCAAACTTTT+AGG | - | chr7.1:4781163-4781182 | MS.gene050412:intron | 25.0% |
| !! | AGAAAACAATACACGTTTTT+GGG | + | chr7.1:4781052-4781071 | None:intergenic | 25.0% |
| !! | TAATGCTATGCTATTTGATT+AGG | + | chr7.1:4780799-4780818 | None:intergenic | 25.0% |
| !! | TAGAAAACAATACACGTTTT+TGG | + | chr7.1:4781053-4781072 | None:intergenic | 25.0% |
| !! | TTTAATTTAACCTGCAGTTA+GGG | - | chr7.1:4781321-4781340 | MS.gene050412:intron | 25.0% |
| !!! | CTTTTTGATTGAATTAAACG+CGG | + | chr7.1:4780373-4780392 | None:intergenic | 25.0% |
| !!! | TTATGAACTACTTTTGTTGT+AGG | - | chr7.1:4781625-4781644 | MS.gene050412:intron | 25.0% |
| !!! | TTTATCTCTGATTTTTTTGG+AGG | + | chr7.1:4780321-4780340 | None:intergenic | 25.0% |
| !!! | TTTGATAACACATTTTAAGG+GGG | - | chr7.1:4780597-4780616 | MS.gene050412:intron | 25.0% |
| !!! | TTTTTTTAGACATGAAAGCA+TGG | + | chr7.1:4781276-4781295 | None:intergenic | 25.0% |
| AAGTGTAAATGGGTAATCTT+CGG | + | chr7.1:4781509-4781528 | None:intergenic | 30.0% | |
| ATAGAGATTGCATACAAAGA+TGG | - | chr7.1:4779682-4779701 | MS.gene050412:CDS | 30.0% | |
| GGAAATGAAGATAGAACTAA+AGG | + | chr7.1:4780124-4780143 | None:intergenic | 30.0% | |
| GTTACTAGTAAGACATTGTT+TGG | - | chr7.1:4781465-4781484 | MS.gene050412:CDS | 30.0% | |
| TACATAGTTACCAAGACAAT+CGG | - | chr7.1:4781686-4781705 | MS.gene050412:CDS | 30.0% | |
| TATTAAGTCTTAGCTACACA+TGG | - | chr7.1:4780431-4780450 | MS.gene050412:CDS | 30.0% | |
| TGTAATAGAAAGTGATTACC+CGG | - | chr7.1:4780667-4780686 | MS.gene050412:intron | 30.0% | |
| ! | CTTTAATTTAACCTGCAGTT+AGG | - | chr7.1:4781320-4781339 | MS.gene050412:intron | 30.0% |
| ! | TTACGGTAAGAAGTGTAAAT+GGG | + | chr7.1:4781519-4781538 | None:intergenic | 30.0% |
| !! | TCAAACTTTTAGGTCACATT+TGG | - | chr7.1:4781173-4781192 | MS.gene050412:intron | 30.0% |
| !! | TTGATAACACATTTTAAGGG+GGG | - | chr7.1:4780598-4780617 | MS.gene050412:intron | 30.0% |
| AACATGTGAAATATGTCTCC+AGG | - | chr7.1:4779725-4779744 | MS.gene050412:intron | 35.0% | |
| AGCTTTCAAACTCTTCTTCA+TGG | + | chr7.1:4779472-4779491 | None:intergenic | 35.0% | |
| ATGTTGTGACGTAAATTGGA+TGG | - | chr7.1:4779945-4779964 | MS.gene050412:intron | 35.0% | |
| CATGCAATGATGTATTCTGT+AGG | - | chr7.1:4781395-4781414 | MS.gene050412:intron | 35.0% | |
| CGGAAATCAAGTACTACTTA+CGG | + | chr7.1:4781536-4781555 | None:intergenic | 35.0% | |
| CTGAACTACTAGTACATAGT+CGG | + | chr7.1:4781226-4781245 | None:intergenic | 35.0% | |
| GAAGCTGGTCAAATTAAAAC+TGG | - | chr7.1:4781362-4781381 | MS.gene050412:intron | 35.0% | |
| GTTGTAGGTCATTGTTCTAA+AGG | - | chr7.1:4781640-4781659 | MS.gene050412:CDS | 35.0% | |
| TAATCATCATCACACATACC+TGG | + | chr7.1:4779746-4779765 | None:intergenic | 35.0% | |
| TAGGGAAAATAACGAGTCAA+GGG | - | chr7.1:4780878-4780897 | MS.gene050412:intron | 35.0% | |
| TGTTGTGACGTAAATTGGAT+GGG | - | chr7.1:4779946-4779965 | MS.gene050412:intron | 35.0% | |
| TTAGGGAAAATAACGAGTCA+AGG | - | chr7.1:4780877-4780896 | MS.gene050412:intron | 35.0% | |
| ! | CTTACGGTAAGAAGTGTAAA+TGG | + | chr7.1:4781520-4781539 | None:intergenic | 35.0% |
| ! | GATGATTTAAGGTTACTCTC+TGG | - | chr7.1:4779425-4779444 | MS.gene050412:CDS | 35.0% |
| ! | GGTGCAACTATTTTATACGT+TGG | - | chr7.1:4780460-4780479 | MS.gene050412:CDS | 35.0% |
| ! | GTCTTGGTAACTATGTACAT+GGG | + | chr7.1:4781683-4781702 | None:intergenic | 35.0% |
| ! | TGTCTTGGTAACTATGTACA+TGG | + | chr7.1:4781684-4781703 | None:intergenic | 35.0% |
| ! | TTTTTGCAGCAATATGAACC+CGG | - | chr7.1:4780282-4780301 | MS.gene050412:intron | 35.0% |
| !! | TTCTTGTTCTGGAACTGTTA+AGG | - | chr7.1:4779514-4779533 | MS.gene050412:intron | 35.0% |
| !!! | ATCTCTGATTTTTTTGGAGG+AGG | + | chr7.1:4780318-4780337 | None:intergenic | 35.0% |
| AAACGCGATAAGAGAAAGTG+AGG | - | chr7.1:4780634-4780653 | MS.gene050412:intron | 40.0% | |
| AATAGCATTAGGCGCTATCA+AGG | - | chr7.1:4781719-4781738 | MS.gene050412:CDS | 40.0% | |
| ACAGTTCCAGAACAAGAACA+AGG | + | chr7.1:4779512-4779531 | None:intergenic | 40.0% | |
| ACCAGGAAAATGCTTTCACA+AGG | + | chr7.1:4781012-4781031 | None:intergenic | 40.0% | |
| ATAAGAGAAAGTGAGGTGGA+AGG | - | chr7.1:4780641-4780660 | MS.gene050412:intron | 40.0% | |
| ATGATGAAGCAATGCCCATA+AGG | - | chr7.1:4780340-4780359 | MS.gene050412:intron | 40.0% | |
| CAAAGATGGTGTAACGAGAA+AGG | - | chr7.1:4779696-4779715 | MS.gene050412:intron | 40.0% | |
| GACCAGCTTCAATATCAGTT+GGG | + | chr7.1:4781352-4781371 | None:intergenic | 40.0% | |
| GAGCCATTCTGAATAGCATT+AGG | - | chr7.1:4781708-4781727 | MS.gene050412:CDS | 40.0% | |
| GTTGAATTGTCATTGCCAAC+TGG | - | chr7.1:4780907-4780926 | MS.gene050412:intron | 40.0% | |
| TAATCTTCGGTTCCACTTGT+GGG | + | chr7.1:4781496-4781515 | None:intergenic | 40.0% | |
| TGACCAGCTTCAATATCAGT+TGG | + | chr7.1:4781353-4781372 | None:intergenic | 40.0% | |
| TTCCCAACTGATATTGAAGC+TGG | - | chr7.1:4781347-4781366 | MS.gene050412:intron | 40.0% | |
| ! | AAACGCGGTAAAGTACCTTA+TGG | + | chr7.1:4780358-4780377 | None:intergenic | 40.0% |
| ! | AACGCGGTAAAGTACCTTAT+GGG | + | chr7.1:4780357-4780376 | None:intergenic | 40.0% |
| ! | ACAAGAACAAGGTGCTTCTA+AGG | + | chr7.1:4779501-4779520 | None:intergenic | 40.0% |
| ! | ACATGAAAGCATGGTGTTTG+TGG | + | chr7.1:4781267-4781286 | None:intergenic | 40.0% |
| ! | CATGAAAGCATGGTGTTTGT+GGG | + | chr7.1:4781266-4781285 | None:intergenic | 40.0% |
| !! | ACACGTATTTTGCTGTCGTT+AGG | - | chr7.1:4779918-4779937 | MS.gene050412:intron | 40.0% |
| !! | GTCATTGTTCTAAAGGCTTG+CGG | - | chr7.1:4781647-4781666 | MS.gene050412:CDS | 40.0% |
| !!! | ACCTTGTGAAAGCATTTTCC+TGG | - | chr7.1:4781008-4781027 | MS.gene050412:intron | 40.0% |
| AGTCTTAGCTACACATGGCA+TGG | - | chr7.1:4780436-4780455 | MS.gene050412:CDS | 45.0% | |
| CAATGATCGACAGTGAAACG+CGG | + | chr7.1:4780717-4780736 | None:intergenic | 45.0% | |
| CCATTAGTACGGCTGTATGT+AGG | + | chr7.1:4781601-4781620 | None:intergenic | 45.0% | |
| CCTACATACAGCCGTACTAA+TGG | - | chr7.1:4781598-4781617 | MS.gene050412:intron | 45.0% | |
| GCGCCTAATGCTATTCAGAA+TGG | + | chr7.1:4781714-4781733 | None:intergenic | 45.0% | |
| GGGAGAAAGAGTTATCTGTG+AGG | - | chr7.1:4779895-4779914 | MS.gene050412:intron | 45.0% | |
| GTAATCTTCGGTTCCACTTG+TGG | + | chr7.1:4781497-4781516 | None:intergenic | 45.0% | |
| TTAGTGGTAGAGCTGCATTC+CGG | + | chr7.1:4780689-4780708 | None:intergenic | 45.0% | |
| TTGGGAAAAACCCTAACTGC+AGG | + | chr7.1:4781334-4781353 | None:intergenic | 45.0% | |
| ! | GAAGCACCTTGTTCTTGTTC+TGG | - | chr7.1:4779503-4779522 | MS.gene050412:intron | 45.0% |
| !! | ACAAGGTGCTTCTAAGGCTT+TGG | + | chr7.1:4779495-4779514 | None:intergenic | 45.0% |
| ATGCCAATTGCCCCAACACA+AGG | - | chr7.1:4780931-4780950 | MS.gene050412:intron | 50.0% | |
| CAGAATGGCTCCGATTGTCT+TGG | + | chr7.1:4781699-4781718 | None:intergenic | 50.0% | |
| CGCGATAAGAGAAAGTGAGG+TGG | - | chr7.1:4780637-4780656 | MS.gene050412:intron | 50.0% | |
| CGCGTTTCACTGTCGATCAT+TGG | - | chr7.1:4780715-4780734 | MS.gene050412:intron | 50.0% | |
| CTTAGCTACACATGGCATGG+AGG | - | chr7.1:4780439-4780458 | MS.gene050412:CDS | 50.0% | |
| GTGAAACGCGGTTCTGTTAG+TGG | + | chr7.1:4780705-4780724 | None:intergenic | 50.0% | |
| TAGTGGTAGAGCTGCATTCC+GGG | + | chr7.1:4780688-4780707 | None:intergenic | 50.0% | |
| TGCCAATTGCCCCAACACAA+GGG | - | chr7.1:4780932-4780951 | MS.gene050412:intron | 50.0% | |
| TGGAGGAGGAGCTGTATATC+CGG | + | chr7.1:4780304-4780323 | None:intergenic | 50.0% | |
| ! | CTTCTAGGAGCCCTTGTGTT+GGG | + | chr7.1:4780945-4780964 | None:intergenic | 50.0% |
| ! | TCTTCTAGGAGCCCTTGTGT+TGG | + | chr7.1:4780946-4780965 | None:intergenic | 50.0% |
| ! | TTCTAGGAGCCCTTGTGTTG+GGG | + | chr7.1:4780944-4780963 | None:intergenic | 50.0% |
| !! | TGTTTGGTAGTGCCCACAAG+TGG | - | chr7.1:4781481-4781500 | MS.gene050412:intron | 50.0% |
| AGAGTCGTGACTCGTGTACC+AGG | + | chr7.1:4781029-4781048 | None:intergenic | 55.0% | |
| AGCCCTTGTGTTGGGGCAAT+TGG | + | chr7.1:4780937-4780956 | None:intergenic | 55.0% | |
| GGAGGAGGAGCTGTATATCC+GGG | + | chr7.1:4780303-4780322 | None:intergenic | 55.0% | |
| GGGGCAATTGGCATTCCAGT+TGG | + | chr7.1:4780925-4780944 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 4779401 | 4781766 | 4779401 | ID=MS.gene050412 |
| chr7.1 | mRNA | 4779401 | 4781766 | 4779401 | ID=MS.gene050412.t1;Parent=MS.gene050412 |
| chr7.1 | exon | 4781632 | 4781766 | 4781632 | ID=MS.gene050412.t1.exon1;Parent=MS.gene050412.t1 |
| chr7.1 | CDS | 4781632 | 4781766 | 4781632 | ID=cds.MS.gene050412.t1;Parent=MS.gene050412.t1 |
| chr7.1 | exon | 4781421 | 4781492 | 4781421 | ID=MS.gene050412.t1.exon2;Parent=MS.gene050412.t1 |
| chr7.1 | CDS | 4781421 | 4781492 | 4781421 | ID=cds.MS.gene050412.t1;Parent=MS.gene050412.t1 |
| chr7.1 | exon | 4780806 | 4780876 | 4780806 | ID=MS.gene050412.t1.exon3;Parent=MS.gene050412.t1 |
| chr7.1 | CDS | 4780806 | 4780876 | 4780806 | ID=cds.MS.gene050412.t1;Parent=MS.gene050412.t1 |
| chr7.1 | exon | 4780422 | 4780551 | 4780422 | ID=MS.gene050412.t1.exon4;Parent=MS.gene050412.t1 |
| chr7.1 | CDS | 4780422 | 4780551 | 4780422 | ID=cds.MS.gene050412.t1;Parent=MS.gene050412.t1 |
| chr7.1 | exon | 4779633 | 4779713 | 4779633 | ID=MS.gene050412.t1.exon5;Parent=MS.gene050412.t1 |
| chr7.1 | CDS | 4779633 | 4779713 | 4779633 | ID=cds.MS.gene050412.t1;Parent=MS.gene050412.t1 |
| chr7.1 | exon | 4779401 | 4779520 | 4779401 | ID=MS.gene050412.t1.exon6;Parent=MS.gene050412.t1 |
| chr7.1 | CDS | 4779401 | 4779520 | 4779401 | ID=cds.MS.gene050412.t1;Parent=MS.gene050412.t1 |
| Gene Sequence |
| Protein sequence |
