Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28824.t1 | XP_013450269.1 | 92.7 | 859 | 62 | 1 | 1 | 858 | 1 | 859 | 0.00E+00 | 1676.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28824.t1 | Q93XK2 | 85.3 | 859 | 119 | 2 | 1 | 858 | 1 | 853 | 0.0e+00 | 1545.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28824.t1 | A0A072U3J2 | 92.7 | 859 | 62 | 1 | 1 | 858 | 1 | 859 | 0.0e+00 | 1676.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050414 | MS.gene28824 | 0.86705 | 1.82E-65 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28824.t1 | MTR_7g106910 | 92.666 | 859 | 62 | 1 | 1 | 858 | 1 | 859 | 0.0 | 1647 |
MS.gene28824.t1 | MTR_8g088020 | 86.830 | 858 | 94 | 3 | 1 | 858 | 1 | 839 | 0.0 | 1549 |
MS.gene28824.t1 | MTR_1g097450 | 84.455 | 862 | 122 | 2 | 1 | 858 | 1 | 854 | 0.0 | 1513 |
MS.gene28824.t1 | MTR_7g109790 | 91.243 | 354 | 24 | 1 | 502 | 855 | 9 | 355 | 0.0 | 666 |
MS.gene28824.t1 | MTR_3g077280 | 41.860 | 860 | 397 | 13 | 1 | 844 | 1 | 773 | 0.0 | 664 |
MS.gene28824.t1 | MTR_6g004880 | 51.805 | 471 | 217 | 6 | 382 | 844 | 306 | 774 | 3.17e-164 | 497 |
MS.gene28824.t1 | MTR_6g004880 | 40.299 | 335 | 155 | 6 | 1 | 307 | 1 | 318 | 2.82e-65 | 234 |
MS.gene28824.t1 | MTR_4g105250 | 50.743 | 471 | 221 | 7 | 383 | 844 | 297 | 765 | 2.86e-161 | 489 |
MS.gene28824.t1 | MTR_4g105250 | 43.082 | 318 | 160 | 7 | 1 | 307 | 1 | 308 | 1.60e-67 | 240 |
MS.gene28824.t1 | MTR_4g115330 | 36.585 | 492 | 292 | 8 | 367 | 849 | 180 | 660 | 7.69e-96 | 315 |
MS.gene28824.t1 | MTR_4g115330 | 38.318 | 214 | 111 | 4 | 98 | 302 | 1 | 202 | 1.11e-37 | 151 |
MS.gene28824.t1 | MTR_4g115330 | 36.585 | 492 | 292 | 8 | 367 | 849 | 305 | 785 | 4.20e-95 | 316 |
MS.gene28824.t1 | MTR_4g115330 | 37.619 | 210 | 110 | 4 | 102 | 302 | 130 | 327 | 6.82e-35 | 143 |
MS.gene28824.t1 | MTR_7g091880 | 37.205 | 508 | 277 | 9 | 363 | 843 | 263 | 755 | 9.42e-95 | 314 |
MS.gene28824.t1 | MTR_7g091880 | 32.226 | 301 | 174 | 4 | 18 | 310 | 7 | 285 | 1.11e-40 | 161 |
MS.gene28824.t1 | MTR_5g096820 | 39.269 | 438 | 247 | 7 | 388 | 819 | 296 | 720 | 8.43e-94 | 311 |
MS.gene28824.t1 | MTR_5g096820 | 33.198 | 247 | 141 | 3 | 71 | 299 | 42 | 282 | 1.01e-37 | 152 |
MS.gene28824.t1 | MTR_3g075510 | 37.093 | 461 | 267 | 8 | 406 | 858 | 306 | 751 | 7.20e-91 | 303 |
MS.gene28824.t1 | MTR_3g075510 | 32.192 | 292 | 150 | 4 | 27 | 298 | 16 | 279 | 2.41e-39 | 157 |
MS.gene28824.t1 | MTR_1g052515 | 38.876 | 445 | 253 | 7 | 406 | 843 | 293 | 725 | 4.47e-90 | 301 |
MS.gene28824.t1 | MTR_1g052515 | 36.481 | 233 | 140 | 2 | 71 | 299 | 42 | 270 | 1.51e-40 | 160 |
MS.gene28824.t1 | MTR_5g096820 | 44.371 | 302 | 155 | 4 | 388 | 686 | 296 | 587 | 6.96e-79 | 268 |
MS.gene28824.t1 | MTR_5g096820 | 33.198 | 247 | 141 | 3 | 71 | 299 | 42 | 282 | 5.24e-38 | 151 |
MS.gene28824.t1 | MTR_3g075510 | 42.628 | 312 | 166 | 4 | 406 | 714 | 306 | 607 | 1.92e-75 | 259 |
MS.gene28824.t1 | MTR_3g075510 | 32.192 | 292 | 150 | 4 | 27 | 298 | 16 | 279 | 1.15e-39 | 156 |
MS.gene28824.t1 | MTR_5g065520 | 57.576 | 66 | 28 | 0 | 621 | 686 | 219 | 284 | 5.17e-20 | 94.0 |
MS.gene28824.t1 | MTR_3g089400 | 82.051 | 39 | 7 | 0 | 593 | 631 | 354 | 392 | 5.72e-14 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28824.t1 | AT4G01970 | 57.394 | 852 | 343 | 12 | 18 | 858 | 34 | 876 | 0.0 | 1010 |
MS.gene28824.t1 | AT4G01970 | 57.394 | 852 | 343 | 12 | 18 | 858 | 81 | 923 | 0.0 | 1009 |
MS.gene28824.t1 | AT5G40390 | 52.268 | 463 | 217 | 4 | 384 | 844 | 310 | 770 | 4.35e-171 | 515 |
MS.gene28824.t1 | AT5G40390 | 42.424 | 297 | 147 | 4 | 18 | 302 | 22 | 306 | 9.55e-64 | 229 |
MS.gene28824.t1 | AT5G20250 | 37.991 | 458 | 269 | 7 | 388 | 842 | 287 | 732 | 2.08e-91 | 305 |
MS.gene28824.t1 | AT5G20250 | 33.898 | 295 | 157 | 3 | 20 | 299 | 9 | 280 | 8.76e-43 | 167 |
MS.gene28824.t1 | AT5G20250 | 37.991 | 458 | 269 | 7 | 388 | 842 | 287 | 732 | 2.08e-91 | 305 |
MS.gene28824.t1 | AT5G20250 | 33.898 | 295 | 157 | 3 | 20 | 299 | 9 | 280 | 8.76e-43 | 167 |
MS.gene28824.t1 | AT5G20250 | 37.991 | 458 | 269 | 7 | 388 | 842 | 287 | 732 | 2.08e-91 | 305 |
MS.gene28824.t1 | AT5G20250 | 33.898 | 295 | 157 | 3 | 20 | 299 | 9 | 280 | 8.76e-43 | 167 |
MS.gene28824.t1 | AT3G57520 | 34.109 | 516 | 292 | 10 | 363 | 847 | 264 | 762 | 3.02e-91 | 305 |
MS.gene28824.t1 | AT3G57520 | 36.250 | 240 | 136 | 3 | 71 | 299 | 42 | 275 | 7.70e-41 | 161 |
MS.gene28824.t1 | AT5G20250 | 37.991 | 458 | 269 | 7 | 388 | 842 | 382 | 827 | 6.76e-91 | 306 |
MS.gene28824.t1 | AT5G20250 | 34.237 | 295 | 156 | 4 | 20 | 299 | 104 | 375 | 1.84e-42 | 167 |
MS.gene28824.t1 | AT1G55740 | 38.530 | 449 | 255 | 8 | 403 | 842 | 303 | 739 | 3.09e-88 | 296 |
MS.gene28824.t1 | AT1G55740 | 31.834 | 289 | 166 | 5 | 20 | 299 | 9 | 275 | 7.88e-39 | 155 |
MS.gene28824.t1 | AT3G57520 | 35.381 | 407 | 243 | 7 | 363 | 766 | 264 | 653 | 3.57e-78 | 267 |
MS.gene28824.t1 | AT3G57520 | 36.250 | 240 | 136 | 3 | 71 | 299 | 42 | 275 | 2.72e-41 | 162 |
MS.gene28824.t1 | AT3G57520 | 38.333 | 300 | 168 | 5 | 363 | 659 | 264 | 549 | 5.21e-61 | 217 |
MS.gene28824.t1 | AT3G57520 | 36.250 | 240 | 136 | 3 | 71 | 299 | 42 | 275 | 7.59e-42 | 162 |
Find 195 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCCTAAACTTGTGCTCTTT+TGG | 0.125940 | 7.4:+5702636 | None:intergenic |
AAACAACTGTTCTCAAAATT+TGG | 0.128848 | 7.4:-5702941 | MS.gene28824:CDS |
AATTGAATTGGTTCAGATTT+TGG | 0.163451 | 7.4:+5702468 | None:intergenic |
CCAAATTTAGTTGATAAATT+TGG | 0.169026 | 7.4:-5704779 | MS.gene28824:CDS |
AGAGGAAAATGTATGCATTT+TGG | 0.172365 | 7.4:+5703005 | None:intergenic |
TTTATCTGAGGGAAAGTTTA+AGG | 0.176920 | 7.4:-5705362 | MS.gene28824:CDS |
CCAAATTTATCAACTAAATT+TGG | 0.182749 | 7.4:+5704779 | None:intergenic |
TCCATTTCCATTAAAATTCT+TGG | 0.200527 | 7.4:+5703495 | None:intergenic |
ATCATTCCTATAATTGAAAA+AGG | 0.215479 | 7.4:-5705004 | MS.gene28824:CDS |
ATTGTTCCTATAATAGTTTA+TGG | 0.227178 | 7.4:-5703199 | MS.gene28824:CDS |
TCCCATCCATAAACTATTAT+AGG | 0.237992 | 7.4:+5703193 | None:intergenic |
ACTATTGGCTTGTAGCATTC+AGG | 0.242224 | 7.4:+5702609 | None:intergenic |
AACATCAAATTTGCAGCAAT+TGG | 0.252859 | 7.4:-5702384 | MS.gene28824:CDS |
TCTCACAAAGGTGGTTTCTT+TGG | 0.256159 | 7.4:-5705217 | MS.gene28824:CDS |
ACAGCATAAGATTTGATTTC+AGG | 0.256375 | 7.4:+5705028 | None:intergenic |
TATGAAAGTGGATTGTTATT+AGG | 0.257420 | 7.4:-5704521 | MS.gene28824:CDS |
CCATTCAATTGAAACTTCTT+TGG | 0.259667 | 7.4:+5702246 | None:intergenic |
AAGAGGCTTATAGTGTTATA+AGG | 0.261390 | 7.4:-5704844 | MS.gene28824:CDS |
ACATTATCACTCAAATAAAT+TGG | 0.261796 | 7.4:+5703083 | None:intergenic |
GGATTAAAAGGAGGTGAATT+AGG | 0.268125 | 7.4:+5704497 | None:intergenic |
TGAAAGTGGTGCAAAGATTA+AGG | 0.276825 | 7.4:-5702310 | MS.gene28824:CDS |
GGAATTGAACATGAGCATTT+GGG | 0.290038 | 7.4:-5704446 | MS.gene28824:CDS |
TTTATCTAAGAGTTCTGATT+TGG | 0.304861 | 7.4:-5704402 | MS.gene28824:CDS |
TTTGTTCCTGTCACAAAGTT+TGG | 0.307091 | 7.4:-5702411 | MS.gene28824:CDS |
TGAAGTGGCGTTTGAGTGGC+TGG | 0.307659 | 7.4:-5702220 | MS.gene28824:CDS |
ATGCTCATGTTCAATTCCTT+TGG | 0.319521 | 7.4:+5704451 | None:intergenic |
GAAGAAAGAAGCATCTGATT+TGG | 0.320028 | 7.4:-5702550 | MS.gene28824:CDS |
CACTCTTATCTTGCTGAATC+TGG | 0.323017 | 7.4:-5704005 | MS.gene28824:CDS |
AGGAATTGAACATGAGCATT+TGG | 0.323538 | 7.4:-5704447 | MS.gene28824:CDS |
CCAAAGAAGTTTCAATTGAA+TGG | 0.327615 | 7.4:-5702246 | MS.gene28824:CDS |
AAAGAAATTGATGATCTCTT+TGG | 0.331904 | 7.4:-5704347 | MS.gene28824:CDS |
TGGTGGAACAATTCTTGATT+TGG | 0.333054 | 7.4:-5702340 | MS.gene28824:CDS |
GGTGCAAAGATTAAGGTTAA+AGG | 0.343844 | 7.4:-5702303 | MS.gene28824:CDS |
AAACTTTCACCTGGCCTTGA+TGG | 0.345335 | 7.4:-5704119 | MS.gene28824:CDS |
CCCAAAAGAGCACAAGTTTA+GGG | 0.345555 | 7.4:-5702637 | MS.gene28824:CDS |
ACCCAAAAGAGCACAAGTTT+AGG | 0.346754 | 7.4:-5702638 | MS.gene28824:CDS |
TGTGTGCAGGGGACGACTTT+TGG | 0.348233 | 7.4:-5703283 | MS.gene28824:intron |
GTATTAAGATGTGTGGTTCC+TGG | 0.349633 | 7.4:+5704158 | None:intergenic |
TGATAGATTGATGAATTCAT+TGG | 0.350934 | 7.4:-5705173 | MS.gene28824:CDS |
AAGTTTGCAAGGGACAATTT+TGG | 0.353779 | 7.4:+5704136 | None:intergenic |
AATTCATTGGGTAGTTTCAA+TGG | 0.355636 | 7.4:-5705160 | MS.gene28824:CDS |
TGTTGCAAGGAAAAGGAGTA+TGG | 0.358061 | 7.4:-5704278 | MS.gene28824:CDS |
TTGGATCACCATTAGGATCT+TGG | 0.360993 | 7.4:+5703258 | None:intergenic |
TCTATCAGATGGGGTTTCAT+TGG | 0.361535 | 7.4:+5705189 | None:intergenic |
GGCTGGTGGTGTTTCTGATT+TGG | 0.365056 | 7.4:-5702157 | MS.gene28824:CDS |
AAAATTGTTGAAGGTTCAAT+TGG | 0.374085 | 7.4:-5704071 | MS.gene28824:CDS |
GCATGCATTATGTGGTGCTT+GGG | 0.377719 | 7.4:-5704192 | MS.gene28824:CDS |
ACTCAATGGGTAGGTAAATC+TGG | 0.379853 | 7.4:-5705094 | MS.gene28824:CDS |
GCTTGGGGTGGTGTGAGGCC+AGG | 0.381667 | 7.4:-5704176 | MS.gene28824:CDS |
GATGCAAAGAATCTTGTTCT+TGG | 0.383283 | 7.4:-5704602 | MS.gene28824:CDS |
GAATATGTGTGTGATAAATA+TGG | 0.383570 | 7.4:-5703571 | MS.gene28824:CDS |
CTTGCTGAATCTGGCGTCAC+AGG | 0.389510 | 7.4:-5703996 | MS.gene28824:CDS |
ATAAATTTGGTTGGTGTACT+TGG | 0.391671 | 7.4:-5704766 | MS.gene28824:CDS |
AAATGACTTTCAATGTTCCT+TGG | 0.394355 | 7.4:-5702188 | MS.gene28824:CDS |
TAGCACAAATATGGTCTGAT+TGG | 0.396236 | 7.4:+5703141 | None:intergenic |
AAGAAAGAAGCATCTGATTT+GGG | 0.399298 | 7.4:-5702549 | MS.gene28824:CDS |
GAGGACTAAGTTCAAAGGTT+TGG | 0.399831 | 7.4:-5704231 | MS.gene28824:CDS |
CATGAAATTTAGCACAAATA+TGG | 0.402279 | 7.4:+5703132 | None:intergenic |
GCTTTCAACTGTCAAGGGGC+AGG | 0.405154 | 7.4:-5702666 | MS.gene28824:CDS |
AGATCAACGGTTGTGGAATT+CGG | 0.405372 | 7.4:+5705409 | None:intergenic |
GCCTCTTTCATCAAATCATA+AGG | 0.410886 | 7.4:+5704860 | None:intergenic |
ACAAATGATTCGACCTGATT+GGG | 0.417373 | 7.4:-5703171 | MS.gene28824:CDS |
ATCTGGTTCTGATTTACAAA+TGG | 0.419921 | 7.4:-5705077 | MS.gene28824:CDS |
GGCATGCATTATGTGGTGCT+TGG | 0.419974 | 7.4:-5704193 | MS.gene28824:CDS |
GACAAATGATTCGACCTGAT+TGG | 0.425731 | 7.4:-5703172 | MS.gene28824:CDS |
TCCATTAAAATTCTTGGCAA+TGG | 0.426719 | 7.4:+5703501 | None:intergenic |
TATTTAACTGTTAATCCTGT+TGG | 0.427385 | 7.4:-5704734 | MS.gene28824:CDS |
TCCTTATGATTTGATGAAAG+AGG | 0.429052 | 7.4:-5704861 | MS.gene28824:CDS |
TAACCCTTCATAGTAAGCTT+TGG | 0.430154 | 7.4:+5703531 | None:intergenic |
GGTTGAATGATAAATTGAAT+TGG | 0.432932 | 7.4:+5702456 | None:intergenic |
AAACTTGGTGGTCTACTCAA+TGG | 0.435481 | 7.4:-5705108 | MS.gene28824:CDS |
TGGATGGCAAAGCATTAGTT+TGG | 0.435861 | 7.4:-5704645 | MS.gene28824:CDS |
ACATGCACAGTACCAACTAT+TGG | 0.438454 | 7.4:+5702594 | None:intergenic |
AGGCTTTCACAAGGGATTTG+AGG | 0.440238 | 7.4:-5704250 | MS.gene28824:CDS |
CTATTGGCTTGTAGCATTCA+GGG | 0.449437 | 7.4:+5702610 | None:intergenic |
GCTCCCATTGGATCACCATT+AGG | 0.450911 | 7.4:+5703251 | None:intergenic |
AGAGGCTTATAGTGTTATAA+GGG | 0.452259 | 7.4:-5704843 | MS.gene28824:CDS |
TTGCTGAATCTGGCGTCACA+GGG | 0.453056 | 7.4:-5703995 | MS.gene28824:CDS |
TTGAAAAGACAATCTCTAGT+AGG | 0.453990 | 7.4:+5702981 | None:intergenic |
TTCCTATAATAGTTTATGGA+TGG | 0.456061 | 7.4:-5703195 | MS.gene28824:CDS |
CAATGTTCCTTGGATTGATG+AGG | 0.456091 | 7.4:-5702178 | MS.gene28824:CDS |
ATTTACAAATGGAAACTCAA+TGG | 0.457763 | 7.4:-5705066 | MS.gene28824:CDS |
AGGTTCGTTATCATTGATGA+TGG | 0.458921 | 7.4:-5704665 | MS.gene28824:CDS |
CTTTCAACTGTCAAGGGGCA+GGG | 0.461758 | 7.4:-5702665 | MS.gene28824:CDS |
GAAATTGATGATCTCTTTGG+TGG | 0.465614 | 7.4:-5704344 | MS.gene28824:CDS |
CTTGCCAAAGCTTACTATGA+AGG | 0.466120 | 7.4:-5703535 | MS.gene28824:CDS |
ACATCAAATTTGCAGCAATT+GGG | 0.466985 | 7.4:-5702383 | MS.gene28824:CDS |
GATTGGAACATGTCCCAATC+AGG | 0.467413 | 7.4:+5703158 | None:intergenic |
AAACAGTATGGAGGAGTGAT+TGG | 0.468721 | 7.4:-5702690 | MS.gene28824:intron |
AAGATTAAGGTTAAAGGTGG+TGG | 0.470866 | 7.4:-5702297 | MS.gene28824:CDS |
GCTGTGGTTAAAATTGTTGA+AGG | 0.473872 | 7.4:-5704080 | MS.gene28824:CDS |
TTTGATGAGATCAACGGTTG+TGG | 0.474107 | 7.4:+5705402 | None:intergenic |
GGAAAAGGAGTATGGTTTGA+AGG | 0.477848 | 7.4:-5704270 | MS.gene28824:CDS |
TCCTATAATAGTTTATGGAT+GGG | 0.485801 | 7.4:-5703194 | MS.gene28824:CDS |
GTCCCTTGCAAACTTTCACC+TGG | 0.492351 | 7.4:-5704128 | MS.gene28824:CDS |
GATAGATTGATGAATTCATT+GGG | 0.493686 | 7.4:-5705172 | MS.gene28824:CDS |
TGGAACAAAGCAAGTTTCCA+TGG | 0.495682 | 7.4:-5703431 | MS.gene28824:CDS |
TATGTGTGGCATGCATTATG+TGG | 0.498900 | 7.4:-5704200 | MS.gene28824:CDS |
ACTGGAAGGCTTCGTAGGCT+TGG | 0.499891 | 7.4:-5704566 | MS.gene28824:CDS |
AACTTGGTGGTCTACTCAAT+GGG | 0.501194 | 7.4:-5705107 | MS.gene28824:CDS |
TGGAAACTTGCTTTGTTCCA+AGG | 0.501688 | 7.4:+5703434 | None:intergenic |
AAGCTTGTGTTGCAAGGAAA+AGG | 0.501879 | 7.4:-5704285 | MS.gene28824:CDS |
TCCATTGTTCCATCAAGGCC+AGG | 0.507048 | 7.4:+5704110 | None:intergenic |
GAATTCATCAATCTATCAGA+TGG | 0.508626 | 7.4:+5705178 | None:intergenic |
TCATTATTTGATTTATCTGA+GGG | 0.509766 | 7.4:-5705373 | MS.gene28824:CDS |
CAAGTTTCCATGGGAAGAGT+TGG | 0.510287 | 7.4:-5703421 | MS.gene28824:intron |
GAACTGAAAGAAACATTCTC+AGG | 0.511175 | 7.4:+5705310 | None:intergenic |
TTGCCACCAAACTTTGTGAC+AGG | 0.514356 | 7.4:+5702405 | None:intergenic |
ATTTGTGCTAAATTTCATGC+TGG | 0.516195 | 7.4:-5703128 | MS.gene28824:CDS |
TTGCTTACCAACTCTTCCCA+TGG | 0.516546 | 7.4:+5703414 | None:intergenic |
GCGATTCACTTGAATAAGCA+AGG | 0.518180 | 7.4:+5702268 | None:intergenic |
ATTAAGGAGTTGATTTCCAA+AGG | 0.521590 | 7.4:-5704467 | MS.gene28824:CDS |
CAACTGTCAAGGGGCAGGGT+GGG | 0.523724 | 7.4:-5702661 | MS.gene28824:CDS |
GATCTTCCATTGTTCCATCA+AGG | 0.523766 | 7.4:+5704105 | None:intergenic |
GTTCCTGTCACAAAGTTTGG+TGG | 0.523854 | 7.4:-5702408 | MS.gene28824:CDS |
GTGGAATTCGGTGGAGCCAT+GGG | 0.526067 | 7.4:+5705421 | None:intergenic |
TGCATGTAACTGAAGTTGAA+TGG | 0.527632 | 7.4:-5702578 | MS.gene28824:CDS |
ATTGGTGCTTTCAACTGTCA+AGG | 0.528036 | 7.4:-5702672 | MS.gene28824:CDS |
GAATGCTACAAGCCAATAGT+TGG | 0.529509 | 7.4:-5702606 | MS.gene28824:CDS |
GCGTTTGAGTGGCTGGGTGA+TGG | 0.533274 | 7.4:-5702213 | MS.gene28824:CDS |
CCAAAAGAGCACAAGTTTAG+GGG | 0.533366 | 7.4:-5702636 | MS.gene28824:CDS |
GCTGGCTCAAGAGCTATTTG+TGG | 0.541307 | 7.4:-5703110 | MS.gene28824:CDS |
GTGGTGCTTGGGGTGGTGTG+AGG | 0.542369 | 7.4:-5704181 | MS.gene28824:CDS |
TAAATTTGGTTGGTGTACTT+GGG | 0.545091 | 7.4:-5704765 | MS.gene28824:CDS |
GTCATTATTTGATTTATCTG+AGG | 0.545173 | 7.4:-5705374 | MS.gene28824:CDS |
AATTCATCAATCTATCAGAT+GGG | 0.545924 | 7.4:+5705179 | None:intergenic |
AGATCCTAATGGTGATCCAA+TGG | 0.546823 | 7.4:-5703255 | MS.gene28824:CDS |
TCGTTATCATTGATGATGGA+TGG | 0.546866 | 7.4:-5704661 | MS.gene28824:CDS |
GCATGTAACTGAAGTTGAAT+GGG | 0.548533 | 7.4:-5702577 | MS.gene28824:CDS |
AGACAATCTCTAGTAGGAAG+AGG | 0.549867 | 7.4:+5702987 | None:intergenic |
TGTGGAATTCGGTGGAGCCA+TGG | 0.550203 | 7.4:+5705420 | None:intergenic |
TCAATTGAATGGTTCTGAAG+TGG | 0.554683 | 7.4:-5702235 | MS.gene28824:CDS |
TTGGTGCTTTCAACTGTCAA+GGG | 0.555981 | 7.4:-5702671 | MS.gene28824:CDS |
GTTCCTTGGATTGATGAGGC+TGG | 0.557186 | 7.4:-5702174 | MS.gene28824:CDS |
AGAAGCATCTGATTTGGGTA+AGG | 0.557243 | 7.4:-5702544 | MS.gene28824:CDS |
AAGAAACTTGTGTTCCCTGA+TGG | 0.557362 | 7.4:-5703035 | MS.gene28824:CDS |
CATGCATTATGTGGTGCTTG+GGG | 0.560019 | 7.4:-5704191 | MS.gene28824:CDS |
ATTTAGTTGATAAATTTGGT+TGG | 0.560697 | 7.4:-5704775 | MS.gene28824:CDS |
ATTTATTTGAGTGATAATGT+TGG | 0.562359 | 7.4:-5703080 | MS.gene28824:CDS |
AGATTAAGGTTAAAGGTGGT+GGG | 0.562856 | 7.4:-5702296 | MS.gene28824:CDS |
GATCCTAATGGTGATCCAAT+GGG | 0.563604 | 7.4:-5703254 | MS.gene28824:CDS |
AAACATTCTCAGGAACATCA+TGG | 0.565376 | 7.4:+5705320 | None:intergenic |
TTGCCAAAGCTTACTATGAA+GGG | 0.565388 | 7.4:-5703534 | MS.gene28824:CDS |
CAAAATTTGGAACTTCAACA+AGG | 0.568909 | 7.4:-5702928 | MS.gene28824:intron |
AGGCCAGGTGAAAGTTTGCA+AGG | 0.571791 | 7.4:+5704125 | None:intergenic |
GTCATGATTTATGCTGAAAG+TGG | 0.572764 | 7.4:-5704944 | MS.gene28824:CDS |
GCAAAGAATCTTGTTCTTGG+TGG | 0.572951 | 7.4:-5704599 | MS.gene28824:CDS |
CAAAAGGCAGCGTTGAACCA+AGG | 0.573876 | 7.4:-5704685 | MS.gene28824:CDS |
TTCAGCAAGATAAGAGTGCA+TGG | 0.574107 | 7.4:+5704010 | None:intergenic |
AAATGACTGGAAGGCTTCGT+AGG | 0.575794 | 7.4:-5704571 | MS.gene28824:CDS |
GATTTGAGGACTAAGTTCAA+AGG | 0.583446 | 7.4:-5704236 | MS.gene28824:CDS |
GGAACAAAGCAAGTTTCCAT+GGG | 0.587236 | 7.4:-5703430 | MS.gene28824:CDS |
TTGACAAACATGTTCAATAG+TGG | 0.587593 | 7.4:-5702360 | MS.gene28824:CDS |
ACCTGGCCTTGATGGAACAA+TGG | 0.589366 | 7.4:-5704111 | MS.gene28824:CDS |
AAAATTGTATAGCTCAAATG+TGG | 0.591781 | 7.4:+5702431 | None:intergenic |
AGGTGGGGCATTTGAATCAG+AGG | 0.593587 | 7.4:+5705267 | None:intergenic |
GGTGGGGCATTTGAATCAGA+GGG | 0.593672 | 7.4:+5705268 | None:intergenic |
TGGCAAAGCATTAGTTTGGA+TGG | 0.596303 | 7.4:-5704641 | MS.gene28824:CDS |
ATGACATGATCATCAGAACC+TGG | 0.596806 | 7.4:+5704962 | None:intergenic |
GGCTCAAGAGCTATTTGTGG+TGG | 0.597968 | 7.4:-5703107 | MS.gene28824:CDS |
GATTTGGAATATGTTGAAAG+TGG | 0.598008 | 7.4:-5702324 | MS.gene28824:CDS |
TCAACTGTCAAGGGGCAGGG+TGG | 0.598050 | 7.4:-5702662 | MS.gene28824:CDS |
GAATTGAACATGAGCATTTG+GGG | 0.600360 | 7.4:-5704445 | MS.gene28824:CDS |
ATGGTTTGAAGGCTTTCACA+AGG | 0.601600 | 7.4:-5704259 | MS.gene28824:CDS |
CTTGGTGGTGAACAAATGAC+TGG | 0.601615 | 7.4:-5704584 | MS.gene28824:CDS |
TGGTTTGAAGGCTTTCACAA+GGG | 0.602786 | 7.4:-5704258 | MS.gene28824:CDS |
GGGTAAGGCAGAAGAGTATG+TGG | 0.602965 | 7.4:-5702529 | MS.gene28824:CDS |
GCATTATGTGGTGCTTGGGG+TGG | 0.604624 | 7.4:-5704188 | MS.gene28824:CDS |
GAGGGAAAGTTTAAGGTGAG+AGG | 0.604806 | 7.4:-5705355 | MS.gene28824:CDS |
ACAAACATGTTCAATAGTGG+TGG | 0.605815 | 7.4:-5702357 | MS.gene28824:CDS |
CTTCATAGTAAGCTTTGGCA+AGG | 0.607720 | 7.4:+5703536 | None:intergenic |
TCATCAATGATAACGAACCT+TGG | 0.607763 | 7.4:+5704668 | None:intergenic |
TGCTGAAAGTGGCTCAACAA+AGG | 0.611900 | 7.4:-5704933 | MS.gene28824:CDS |
TGGTGGTCTACTCAATGGGT+AGG | 0.618024 | 7.4:-5705103 | MS.gene28824:CDS |
GCAAAGATTAAGGTTAAAGG+TGG | 0.619493 | 7.4:-5702300 | MS.gene28824:CDS |
GGCCAGGTGAAAGTTTGCAA+GGG | 0.623453 | 7.4:+5704126 | None:intergenic |
TCAGGAACATCATGGAACAA+AGG | 0.625935 | 7.4:+5705328 | None:intergenic |
AGGCTTCGTAGGCTTGGTGA+AGG | 0.628128 | 7.4:-5704560 | MS.gene28824:CDS |
GTGGTGAACAAATGACTGGA+AGG | 0.628570 | 7.4:-5704580 | MS.gene28824:CDS |
GAAGTGGCGTTTGAGTGGCT+GGG | 0.630895 | 7.4:-5702219 | MS.gene28824:CDS |
TCAACGGTTGTGGAATTCGG+TGG | 0.631067 | 7.4:+5705412 | None:intergenic |
GTTCTGAAGTGGCGTTTGAG+TGG | 0.631457 | 7.4:-5702224 | MS.gene28824:CDS |
TCATATATAAAACAGTATGG+AGG | 0.631649 | 7.4:-5702699 | MS.gene28824:intron |
CAAAAGAGCACAAGTTTAGG+GGG | 0.633226 | 7.4:-5702635 | MS.gene28824:CDS |
TGGTGCTTTCAACTGTCAAG+GGG | 0.636041 | 7.4:-5702670 | MS.gene28824:CDS |
CCTTGGATTGATGAGGCTGG+TGG | 0.637377 | 7.4:-5702171 | MS.gene28824:CDS |
CCACCAGCCTCATCAATCCA+AGG | 0.638283 | 7.4:+5702171 | None:intergenic |
TTGTATAGCTCAAATGTGGA+TGG | 0.640248 | 7.4:+5702435 | None:intergenic |
ATTCATCAATCTATCAGATG+GGG | 0.644616 | 7.4:+5705180 | None:intergenic |
ATGTGGAAGCTTGTGTTGCA+AGG | 0.653096 | 7.4:-5704291 | MS.gene28824:CDS |
GTTTGGATGATGTTTATGTG+TGG | 0.662366 | 7.4:-5704214 | MS.gene28824:CDS |
TATGTGTGTGATAAATATGG+AGG | 0.686908 | 7.4:-5703568 | MS.gene28824:CDS |
TGCTGAATCTGGCGTCACAG+GGG | 0.702078 | 7.4:-5703994 | MS.gene28824:CDS |
AACAATGGAAGATCTTGCTG+TGG | 0.739747 | 7.4:-5704096 | MS.gene28824:CDS |
GGATGGTGCTGATCATAACG+AGG | 0.786161 | 7.4:-5704624 | MS.gene28824:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTACTTACATTATTTTTTTA+AGG | - | chr7.4:5704802-5704821 | MS.gene28824:CDS | 10.0% |
!! | TAAAAAAAGCGATTATTATT+TGG | + | chr7.4:5703955-5703974 | None:intergenic | 15.0% |
!! | TAACTAACTATTAGTTAATT+TGG | + | chr7.4:5703697-5703716 | None:intergenic | 15.0% |
!! | TATGTACAAAAAAGTTTATA+AGG | + | chr7.4:5703788-5703807 | None:intergenic | 15.0% |
!!! | AATATGCAAAGTATTTTATT+AGG | + | chr7.4:5704703-5704722 | None:intergenic | 15.0% |
!!! | CAATGTATTTGATTTAAAAA+AGG | + | chr7.4:5703870-5703889 | None:intergenic | 15.0% |
!!! | TTTTCATATATAAAACAGTA+TGG | - | chr7.4:5704859-5704878 | MS.gene28824:CDS | 15.0% |
!! | AAGTTCAAAAAATATGAAAG+TGG | - | chr7.4:5703028-5703047 | MS.gene28824:CDS | 20.0% |
!! | ACATTATCACTCAAATAAAT+TGG | + | chr7.4:5704481-5704500 | None:intergenic | 20.0% |
!! | ATCATTCCTATAATTGAAAA+AGG | - | chr7.4:5702557-5702576 | MS.gene28824:CDS | 20.0% |
!! | ATTGTTCCTATAATAGTTTA+TGG | - | chr7.4:5704362-5704381 | MS.gene28824:CDS | 20.0% |
!! | CCAAATTTATCAACTAAATT+TGG | + | chr7.4:5702785-5702804 | None:intergenic | 20.0% |
!! | CTTTGCATATTTATTATTGA+TGG | - | chr7.4:5704712-5704731 | MS.gene28824:CDS | 20.0% |
!! | GTTATTACATAATAGCTTAT+AGG | + | chr7.4:5704834-5704853 | None:intergenic | 20.0% |
!! | TGTTGAAATATAATAGTTAG+CGG | - | chr7.4:5703747-5703766 | MS.gene28824:intron | 20.0% |
!!! | ATTTAGTTGATAAATTTGGT+TGG | - | chr7.4:5702786-5702805 | MS.gene28824:intron | 20.0% |
!!! | ATTTATTTGAGTGATAATGT+TGG | - | chr7.4:5704481-5704500 | MS.gene28824:CDS | 20.0% |
!!! | CCAAATTTAGTTGATAAATT+TGG | - | chr7.4:5702782-5702801 | MS.gene28824:intron | 20.0% |
!!! | CTAAAACCTTTTTCAATTAT+AGG | + | chr7.4:5702566-5702585 | None:intergenic | 20.0% |
!!! | CTATAATTGAAAAAGGTTTT+AGG | - | chr7.4:5702564-5702583 | MS.gene28824:CDS | 20.0% |
!!! | TCATTATTTGATTTATCTGA+GGG | - | chr7.4:5702188-5702207 | MS.gene28824:CDS | 20.0% |
!!! | TTAATCGTTTTTGGATTAAA+AGG | + | chr7.4:5703079-5703098 | None:intergenic | 20.0% |
!!! | TTTTAATCCAAAAACGATTA+AGG | - | chr7.4:5703078-5703097 | MS.gene28824:CDS | 20.0% |
! | AAAATTGTATAGCTCAAATG+TGG | + | chr7.4:5705133-5705152 | None:intergenic | 25.0% |
! | AAAATTGTTGAAGGTTCAAT+TGG | - | chr7.4:5703490-5703509 | MS.gene28824:CDS | 25.0% |
! | AAACAACTGTTCTCAAAATT+TGG | - | chr7.4:5704620-5704639 | MS.gene28824:CDS | 25.0% |
! | AATTCATCAATCTATCAGAT+GGG | + | chr7.4:5702385-5702404 | None:intergenic | 25.0% |
! | ATTTACAAATGGAAACTCAA+TGG | - | chr7.4:5702495-5702514 | MS.gene28824:CDS | 25.0% |
! | CATGAAATTTAGCACAAATA+TGG | + | chr7.4:5704432-5704451 | None:intergenic | 25.0% |
! | CATGGAATCATAAAAATCAT+TGG | + | chr7.4:5703536-5703555 | None:intergenic | 25.0% |
! | GAATATGTGTGTGATAAATA+TGG | - | chr7.4:5703990-5704009 | MS.gene28824:CDS | 25.0% |
! | GATAGATTGATGAATTCATT+GGG | - | chr7.4:5702389-5702408 | MS.gene28824:CDS | 25.0% |
! | GGTTGAATGATAAATTGAAT+TGG | + | chr7.4:5705108-5705127 | None:intergenic | 25.0% |
! | TATTTAACTGTTAATCCTGT+TGG | - | chr7.4:5702827-5702846 | MS.gene28824:intron | 25.0% |
! | TCATATATAAAACAGTATGG+AGG | - | chr7.4:5704862-5704881 | MS.gene28824:CDS | 25.0% |
! | TCCATTTCCATTAAAATTCT+TGG | + | chr7.4:5704069-5704088 | None:intergenic | 25.0% |
! | TCCTATAATAGTTTATGGAT+GGG | - | chr7.4:5704367-5704386 | MS.gene28824:CDS | 25.0% |
! | TGATAGATTGATGAATTCAT+TGG | - | chr7.4:5702388-5702407 | MS.gene28824:CDS | 25.0% |
! | TTCCTATAATAGTTTATGGA+TGG | - | chr7.4:5704366-5704385 | MS.gene28824:CDS | 25.0% |
!! | AAAAAGCAAGAACTTTTTGA+AGG | + | chr7.4:5702325-5702344 | None:intergenic | 25.0% |
!! | AAAGAAATTGATGATCTCTT+TGG | - | chr7.4:5703214-5703233 | MS.gene28824:CDS | 25.0% |
!! | GTCATTATTTGATTTATCTG+AGG | - | chr7.4:5702187-5702206 | MS.gene28824:CDS | 25.0% |
!! | TTTATCTAAGAGTTCTGATT+TGG | - | chr7.4:5703159-5703178 | MS.gene28824:CDS | 25.0% |
!!! | AATTGAATTGGTTCAGATTT+TGG | + | chr7.4:5705096-5705115 | None:intergenic | 25.0% |
!!! | AATTTTGGTATTAAGATGTG+TGG | + | chr7.4:5703413-5703432 | None:intergenic | 25.0% |
!!! | TATGAAAGTGGATTGTTATT+AGG | - | chr7.4:5703040-5703059 | MS.gene28824:CDS | 25.0% |
AAATGACTTTCAATGTTCCT+TGG | - | chr7.4:5705373-5705392 | MS.gene28824:CDS | 30.0% | |
AACATCAAATTTGCAGCAAT+TGG | - | chr7.4:5705177-5705196 | MS.gene28824:CDS | 30.0% | |
AAGAGGCTTATAGTGTTATA+AGG | - | chr7.4:5702717-5702736 | MS.gene28824:intron | 30.0% | |
AATTCATTGGGTAGTTTCAA+TGG | - | chr7.4:5702401-5702420 | MS.gene28824:CDS | 30.0% | |
ACATCAAATTTGCAGCAATT+GGG | - | chr7.4:5705178-5705197 | MS.gene28824:CDS | 30.0% | |
AGAGGCTTATAGTGTTATAA+GGG | - | chr7.4:5702718-5702737 | MS.gene28824:intron | 30.0% | |
AGTGTTCAAAAAAGTGAATG+TGG | - | chr7.4:5703253-5703272 | MS.gene28824:CDS | 30.0% | |
ATTCATCAATCTATCAGATG+GGG | + | chr7.4:5702384-5702403 | None:intergenic | 30.0% | |
ATTTGTGCTAAATTTCATGC+TGG | - | chr7.4:5704433-5704452 | MS.gene28824:CDS | 30.0% | |
CCAAAGAAGTTTCAATTGAA+TGG | - | chr7.4:5705315-5705334 | MS.gene28824:CDS | 30.0% | |
CCATTCAATTGAAACTTCTT+TGG | + | chr7.4:5705318-5705337 | None:intergenic | 30.0% | |
GAATTCATCAATCTATCAGA+TGG | + | chr7.4:5702386-5702405 | None:intergenic | 30.0% | |
TATGCCAAACTTCAATACTA+GGG | - | chr7.4:5704677-5704696 | MS.gene28824:CDS | 30.0% | |
TATGTGTGTGATAAATATGG+AGG | - | chr7.4:5703993-5704012 | MS.gene28824:CDS | 30.0% | |
TCCATTAAAATTCTTGGCAA+TGG | + | chr7.4:5704063-5704082 | None:intergenic | 30.0% | |
TCCCATCCATAAACTATTAT+AGG | + | chr7.4:5704371-5704390 | None:intergenic | 30.0% | |
TCCTTATGATTTGATGAAAG+AGG | - | chr7.4:5702700-5702719 | MS.gene28824:intron | 30.0% | |
TTATGCCAAACTTCAATACT+AGG | - | chr7.4:5704676-5704695 | MS.gene28824:CDS | 30.0% | |
TTGAAAAGACAATCTCTAGT+AGG | + | chr7.4:5704583-5704602 | None:intergenic | 30.0% | |
TTGACAAACATGTTCAATAG+TGG | - | chr7.4:5705201-5705220 | MS.gene28824:CDS | 30.0% | |
TTTATCTGAGGGAAAGTTTA+AGG | - | chr7.4:5702199-5702218 | MS.gene28824:CDS | 30.0% | |
! | ACAGCATAAGATTTGATTTC+AGG | + | chr7.4:5702536-5702555 | None:intergenic | 30.0% |
! | AGAGGAAAATGTATGCATTT+TGG | + | chr7.4:5704559-5704578 | None:intergenic | 30.0% |
! | ATAAATTTGGTTGGTGTACT+TGG | - | chr7.4:5702795-5702814 | MS.gene28824:intron | 30.0% |
! | ATCAACTCCTTAATCGTTTT+TGG | + | chr7.4:5703088-5703107 | None:intergenic | 30.0% |
! | ATTAAGGAGTTGATTTCCAA+AGG | - | chr7.4:5703094-5703113 | MS.gene28824:CDS | 30.0% |
! | CAAAATTTGGAACTTCAACA+AGG | - | chr7.4:5704633-5704652 | MS.gene28824:CDS | 30.0% |
! | GAGGAAAATGTATGCATTTT+GGG | + | chr7.4:5704558-5704577 | None:intergenic | 30.0% |
! | GATTTGGAATATGTTGAAAG+TGG | - | chr7.4:5705237-5705256 | MS.gene28824:CDS | 30.0% |
! | TAAATTTGGTTGGTGTACTT+GGG | - | chr7.4:5702796-5702815 | MS.gene28824:intron | 30.0% |
! | TCCATTGCCAAGAATTTTAA+TGG | - | chr7.4:5704059-5704078 | MS.gene28824:CDS | 30.0% |
!! | AAGAAAGAAGCATCTGATTT+GGG | - | chr7.4:5705012-5705031 | MS.gene28824:CDS | 30.0% |
!! | ACAGTTGTTTTGTCAAATAG+AGG | + | chr7.4:5704610-5704629 | None:intergenic | 30.0% |
!! | ATCGTTTTTGGATTAAAAGG+AGG | + | chr7.4:5703076-5703095 | None:intergenic | 30.0% |
!! | ATCTGGTTCTGATTTACAAA+TGG | - | chr7.4:5702484-5702503 | MS.gene28824:CDS | 30.0% |
!! | CAGTTGTTTTGTCAAATAGA+GGG | + | chr7.4:5704609-5704628 | None:intergenic | 30.0% |
!! | GCCAAGAATTTTAATGGAAA+TGG | - | chr7.4:5704065-5704084 | MS.gene28824:CDS | 30.0% |
!! | TAAAAATCATTGGCTTGATC+AGG | + | chr7.4:5703526-5703545 | None:intergenic | 30.0% |
!!! | TCTCAACACTTTTAGGTTAT+TGG | - | chr7.4:5702745-5702764 | MS.gene28824:intron | 30.0% |
!!! | TGCAATGATTTTTTCTTCCT+TGG | - | chr7.4:5704110-5704129 | MS.gene28824:CDS | 30.0% |
AAACATTCTCAGGAACATCA+TGG | + | chr7.4:5702244-5702263 | None:intergenic | 35.0% | |
AAGATTAAGGTTAAAGGTGG+TGG | - | chr7.4:5705264-5705283 | MS.gene28824:CDS | 35.0% | |
ACAAACATGTTCAATAGTGG+TGG | - | chr7.4:5705204-5705223 | MS.gene28824:CDS | 35.0% | |
ACAAATGATTCGACCTGATT+GGG | - | chr7.4:5704390-5704409 | MS.gene28824:CDS | 35.0% | |
AGATTAAGGTTAAAGGTGGT+GGG | - | chr7.4:5705265-5705284 | MS.gene28824:CDS | 35.0% | |
AGGAATTGAACATGAGCATT+TGG | - | chr7.4:5703114-5703133 | MS.gene28824:CDS | 35.0% | |
AGGTTCGTTATCATTGATGA+TGG | - | chr7.4:5702896-5702915 | MS.gene28824:intron | 35.0% | |
ATGCTCATGTTCAATTCCTT+TGG | + | chr7.4:5703113-5703132 | None:intergenic | 35.0% | |
GAACTGAAAGAAACATTCTC+AGG | + | chr7.4:5702254-5702273 | None:intergenic | 35.0% | |
GAATTGAACATGAGCATTTG+GGG | - | chr7.4:5703116-5703135 | MS.gene28824:CDS | 35.0% | |
GATGCAAAGAATCTTGTTCT+TGG | - | chr7.4:5702959-5702978 | MS.gene28824:CDS | 35.0% | |
GATTTGAGGACTAAGTTCAA+AGG | - | chr7.4:5703325-5703344 | MS.gene28824:intron | 35.0% | |
GCAAAGATTAAGGTTAAAGG+TGG | - | chr7.4:5705261-5705280 | MS.gene28824:CDS | 35.0% | |
GCATGTAACTGAAGTTGAAT+GGG | - | chr7.4:5704984-5705003 | MS.gene28824:CDS | 35.0% | |
GCCTCTTTCATCAAATCATA+AGG | + | chr7.4:5702704-5702723 | None:intergenic | 35.0% | |
GCTGTGGTTAAAATTGTTGA+AGG | - | chr7.4:5703481-5703500 | MS.gene28824:CDS | 35.0% | |
GGAATTGAACATGAGCATTT+GGG | - | chr7.4:5703115-5703134 | MS.gene28824:CDS | 35.0% | |
GGATTAAAAGGAGGTGAATT+AGG | + | chr7.4:5703067-5703086 | None:intergenic | 35.0% | |
GGTGCAAAGATTAAGGTTAA+AGG | - | chr7.4:5705258-5705277 | MS.gene28824:CDS | 35.0% | |
GTCATGATTTATGCTGAAAG+TGG | - | chr7.4:5702617-5702636 | MS.gene28824:CDS | 35.0% | |
GTTTGGATGATGTTTATGTG+TGG | - | chr7.4:5703347-5703366 | MS.gene28824:intron | 35.0% | |
TAACCCTTCATAGTAAGCTT+TGG | + | chr7.4:5704033-5704052 | None:intergenic | 35.0% | |
TAGCACAAATATGGTCTGAT+TGG | + | chr7.4:5704423-5704442 | None:intergenic | 35.0% | |
TATTATCTTACACCGACACA+CGG | - | chr7.4:5704758-5704777 | MS.gene28824:CDS | 35.0% | |
TGAAAGTGGTGCAAAGATTA+AGG | - | chr7.4:5705251-5705270 | MS.gene28824:CDS | 35.0% | |
TGCATGTAACTGAAGTTGAA+TGG | - | chr7.4:5704983-5705002 | MS.gene28824:CDS | 35.0% | |
TGGTGGAACAATTCTTGATT+TGG | - | chr7.4:5705221-5705240 | MS.gene28824:CDS | 35.0% | |
TTGCCAAAGCTTACTATGAA+GGG | - | chr7.4:5704027-5704046 | MS.gene28824:CDS | 35.0% | |
TTGTATAGCTCAAATGTGGA+TGG | + | chr7.4:5705129-5705148 | None:intergenic | 35.0% | |
TTTGTTCCTGTCACAAAGTT+TGG | - | chr7.4:5705150-5705169 | MS.gene28824:CDS | 35.0% | |
! | AAGACTTTGTGAGCATTTTC+AGG | - | chr7.4:5702426-5702445 | MS.gene28824:CDS | 35.0% |
! | AAGTTGTGATTTTTGTGTGC+AGG | - | chr7.4:5704265-5704284 | MS.gene28824:CDS | 35.0% |
! | AAGTTTGCAAGGGACAATTT+TGG | + | chr7.4:5703428-5703447 | None:intergenic | 35.0% |
! | AGTTGTGATTTTTGTGTGCA+GGG | - | chr7.4:5704266-5704285 | MS.gene28824:CDS | 35.0% |
! | GAAATTGATGATCTCTTTGG+TGG | - | chr7.4:5703217-5703236 | MS.gene28824:CDS | 35.0% |
! | GACTATTGTAGTGTTTGTTG+TGG | - | chr7.4:5703929-5703948 | MS.gene28824:intron | 35.0% |
! | TCATCAATGATAACGAACCT+TGG | + | chr7.4:5702896-5702915 | None:intergenic | 35.0% |
!! | AATCCTGTTGGTGTTTTTCA+TGG | - | chr7.4:5702839-5702858 | MS.gene28824:intron | 35.0% |
!! | AGAACTTTTTGAAGGAGTGA+AGG | + | chr7.4:5702317-5702336 | None:intergenic | 35.0% |
!! | CTCAGTTTTGATGAGATCAA+CGG | + | chr7.4:5702168-5702187 | None:intergenic | 35.0% |
!! | GAAGAAAGAAGCATCTGATT+TGG | - | chr7.4:5705011-5705030 | MS.gene28824:CDS | 35.0% |
!! | TCAATTGAATGGTTCTGAAG+TGG | - | chr7.4:5705326-5705345 | MS.gene28824:CDS | 35.0% |
!! | TCGTTATCATTGATGATGGA+TGG | - | chr7.4:5702900-5702919 | MS.gene28824:intron | 35.0% |
!!! | ATTTTGGGATTGTACCATCA+GGG | + | chr7.4:5704543-5704562 | None:intergenic | 35.0% |
!!! | GCATTTTCAGGTTCAAAACT+TGG | - | chr7.4:5702438-5702457 | MS.gene28824:CDS | 35.0% |
!!! | GTTCTTGCTTTTTCTCACAA+AGG | - | chr7.4:5702332-5702351 | MS.gene28824:CDS | 35.0% |
!!! | TTTTCAGGTTCAAAACTTGG+TGG | - | chr7.4:5702441-5702460 | MS.gene28824:CDS | 35.0% |
!!! | TTTTGGTTCCAAGATCCTAA+TGG | - | chr7.4:5704295-5704314 | MS.gene28824:CDS | 35.0% |
AAACAGTATGGAGGAGTGAT+TGG | - | chr7.4:5704871-5704890 | MS.gene28824:CDS | 40.0% | |
AACAATGGAAGATCTTGCTG+TGG | - | chr7.4:5703465-5703484 | MS.gene28824:CDS | 40.0% | |
AAGAAACTTGTGTTCCCTGA+TGG | - | chr7.4:5704526-5704545 | MS.gene28824:CDS | 40.0% | |
AAGCTTGTGTTGCAAGGAAA+AGG | - | chr7.4:5703276-5703295 | MS.gene28824:CDS | 40.0% | |
ACATGCACAGTACCAACTAT+TGG | + | chr7.4:5704970-5704989 | None:intergenic | 40.0% | |
ACTCAATGGGTAGGTAAATC+TGG | - | chr7.4:5702467-5702486 | MS.gene28824:CDS | 40.0% | |
AGACAATCTCTAGTAGGAAG+AGG | + | chr7.4:5704577-5704596 | None:intergenic | 40.0% | |
AGACCATGAAAAACACCAAC+AGG | + | chr7.4:5702845-5702864 | None:intergenic | 40.0% | |
AGATCAACGGTTGTGGAATT+CGG | + | chr7.4:5702155-5702174 | None:intergenic | 40.0% | |
AGATCCTAATGGTGATCCAA+TGG | - | chr7.4:5704306-5704325 | MS.gene28824:CDS | 40.0% | |
ATGACATGATCATCAGAACC+TGG | + | chr7.4:5702602-5702621 | None:intergenic | 40.0% | |
ATGGTTTGAAGGCTTTCACA+AGG | - | chr7.4:5703302-5703321 | MS.gene28824:intron | 40.0% | |
CAATGTTCCTTGGATTGATG+AGG | - | chr7.4:5705383-5705402 | MS.gene28824:CDS | 40.0% | |
CACTCTTATCTTGCTGAATC+TGG | - | chr7.4:5703556-5703575 | MS.gene28824:CDS | 40.0% | |
CTTGCCAAAGCTTACTATGA+AGG | - | chr7.4:5704026-5704045 | MS.gene28824:CDS | 40.0% | |
GAATGCTACAAGCCAATAGT+TGG | - | chr7.4:5704955-5704974 | MS.gene28824:CDS | 40.0% | |
GACAAATGATTCGACCTGAT+TGG | - | chr7.4:5704389-5704408 | MS.gene28824:CDS | 40.0% | |
GAGGACTAAGTTCAAAGGTT+TGG | - | chr7.4:5703330-5703349 | MS.gene28824:intron | 40.0% | |
GATCCTAATGGTGATCCAAT+GGG | - | chr7.4:5704307-5704326 | MS.gene28824:CDS | 40.0% | |
GATCTTCCATTGTTCCATCA+AGG | + | chr7.4:5703459-5703478 | None:intergenic | 40.0% | |
GCAAAGAATCTTGTTCTTGG+TGG | - | chr7.4:5702962-5702981 | MS.gene28824:CDS | 40.0% | |
GCGATTCACTTGAATAAGCA+AGG | + | chr7.4:5705296-5705315 | None:intergenic | 40.0% | |
GGAACAAAGCAAGTTTCCAT+GGG | - | chr7.4:5704131-5704150 | MS.gene28824:CDS | 40.0% | |
GTATTAAGATGTGTGGTTCC+TGG | + | chr7.4:5703406-5703425 | None:intergenic | 40.0% | |
TATGTGTGGCATGCATTATG+TGG | - | chr7.4:5703361-5703380 | MS.gene28824:intron | 40.0% | |
TCAGGAACATCATGGAACAA+AGG | + | chr7.4:5702236-5702255 | None:intergenic | 40.0% | |
TCTATCAGATGGGGTTTCAT+TGG | + | chr7.4:5702375-5702394 | None:intergenic | 40.0% | |
TCTCACAAAGGTGGTTTCTT+TGG | - | chr7.4:5702344-5702363 | MS.gene28824:CDS | 40.0% | |
TGGAACAAAGCAAGTTTCCA+TGG | - | chr7.4:5704130-5704149 | MS.gene28824:CDS | 40.0% | |
TGGTTTGAAGGCTTTCACAA+GGG | - | chr7.4:5703303-5703322 | MS.gene28824:intron | 40.0% | |
TGTAACCAAAAAGCTCCCAT+TGG | + | chr7.4:5704325-5704344 | None:intergenic | 40.0% | |
TGTTGCAAGGAAAAGGAGTA+TGG | - | chr7.4:5703283-5703302 | MS.gene28824:intron | 40.0% | |
TTGGATCACCATTAGGATCT+TGG | + | chr7.4:5704306-5704325 | None:intergenic | 40.0% | |
TTTGATGAGATCAACGGTTG+TGG | + | chr7.4:5702162-5702181 | None:intergenic | 40.0% | |
! | AAACTTGGTGGTCTACTCAA+TGG | - | chr7.4:5702453-5702472 | MS.gene28824:CDS | 40.0% |
! | AACTTGGTGGTCTACTCAAT+GGG | - | chr7.4:5702454-5702473 | MS.gene28824:CDS | 40.0% |
! | ACCCAAAAGAGCACAAGTTT+AGG | - | chr7.4:5704923-5704942 | MS.gene28824:CDS | 40.0% |
! | ATTGGTGCTTTCAACTGTCA+AGG | - | chr7.4:5704889-5704908 | MS.gene28824:CDS | 40.0% |
! | CAAAAGAGCACAAGTTTAGG+GGG | - | chr7.4:5704926-5704945 | MS.gene28824:CDS | 40.0% |
! | CCAAAAGAGCACAAGTTTAG+GGG | - | chr7.4:5704925-5704944 | MS.gene28824:CDS | 40.0% |
! | CCCAAAAGAGCACAAGTTTA+GGG | - | chr7.4:5704924-5704943 | MS.gene28824:CDS | 40.0% |
! | CCCTAAACTTGTGCTCTTTT+GGG | + | chr7.4:5704927-5704946 | None:intergenic | 40.0% |
! | CTTCATAGTAAGCTTTGGCA+AGG | + | chr7.4:5704028-5704047 | None:intergenic | 40.0% |
! | GGAAAAGGAGTATGGTTTGA+AGG | - | chr7.4:5703291-5703310 | MS.gene28824:intron | 40.0% |
! | GGGTTCATCTCAACACTTTT+AGG | - | chr7.4:5702738-5702757 | MS.gene28824:intron | 40.0% |
! | GTTGTGATTTTTGTGTGCAG+GGG | - | chr7.4:5704267-5704286 | MS.gene28824:CDS | 40.0% |
! | TAGGCCCTAGTATTGAAGTT+TGG | + | chr7.4:5704684-5704703 | None:intergenic | 40.0% |
! | TGGAAACTTGCTTTGTTCCA+AGG | + | chr7.4:5704130-5704149 | None:intergenic | 40.0% |
! | TGGATGGCAAAGCATTAGTT+TGG | - | chr7.4:5702916-5702935 | MS.gene28824:intron | 40.0% |
! | TGGCAAAGCATTAGTTTGGA+TGG | - | chr7.4:5702920-5702939 | MS.gene28824:intron | 40.0% |
! | TTCAGCAAGATAAGAGTGCA+TGG | + | chr7.4:5703554-5703573 | None:intergenic | 40.0% |
! | TTGGTGCTTTCAACTGTCAA+GGG | - | chr7.4:5704890-5704909 | MS.gene28824:CDS | 40.0% |
!! | ACTATTGGCTTGTAGCATTC+AGG | + | chr7.4:5704955-5704974 | None:intergenic | 40.0% |
!! | ACTTTTTGAAGGAGTGAAGG+TGG | + | chr7.4:5702314-5702333 | None:intergenic | 40.0% |
!! | AGAAGCATCTGATTTGGGTA+AGG | - | chr7.4:5705017-5705036 | MS.gene28824:CDS | 40.0% |
!! | CTATTGGCTTGTAGCATTCA+GGG | + | chr7.4:5704954-5704973 | None:intergenic | 40.0% |
!! | CTTTTTGAAGGAGTGAAGGT+GGG | + | chr7.4:5702313-5702332 | None:intergenic | 40.0% |
!! | GGTCTTGAGGGTTTTTCAAA+AGG | - | chr7.4:5702860-5702879 | MS.gene28824:intron | 40.0% |
!! | GGTGTTTTTCATGGTCTTGA+GGG | - | chr7.4:5702848-5702867 | MS.gene28824:intron | 40.0% |
!! | TGGTGTTTTTCATGGTCTTG+AGG | - | chr7.4:5702847-5702866 | MS.gene28824:intron | 40.0% |
!! | TTTTTGAAGGAGTGAAGGTG+GGG | + | chr7.4:5702312-5702331 | None:intergenic | 40.0% |
!!! | ATGGGAGCTTTTTGGTTACA+AGG | - | chr7.4:5704325-5704344 | MS.gene28824:CDS | 40.0% |
!!! | CATTTTGGGATTGTACCATC+AGG | + | chr7.4:5704544-5704563 | None:intergenic | 40.0% |
!!! | CTTGCTTTTTCTCACAAAGG+TGG | - | chr7.4:5702335-5702354 | MS.gene28824:CDS | 40.0% |
!!! | TTTAGGTCTGCACTTTTTCC+AGG | - | chr7.4:5702581-5702600 | MS.gene28824:CDS | 40.0% |
AAATGACTGGAAGGCTTCGT+AGG | - | chr7.4:5702990-5703009 | MS.gene28824:CDS | 45.0% | |
AGGCTTTCACAAGGGATTTG+AGG | - | chr7.4:5703311-5703330 | MS.gene28824:intron | 45.0% | |
ATGTGGAAGCTTGTGTTGCA+AGG | - | chr7.4:5703270-5703289 | MS.gene28824:CDS | 45.0% | |
CAAGTTTCCATGGGAAGAGT+TGG | - | chr7.4:5704140-5704159 | MS.gene28824:CDS | 45.0% | |
CATGCATTATGTGGTGCTTG+GGG | - | chr7.4:5703370-5703389 | MS.gene28824:intron | 45.0% | |
GATTGGAACATGTCCCAATC+AGG | + | chr7.4:5704406-5704425 | None:intergenic | 45.0% | |
GCATGCATTATGTGGTGCTT+GGG | - | chr7.4:5703369-5703388 | MS.gene28824:intron | 45.0% | |
GTGGTGAACAAATGACTGGA+AGG | - | chr7.4:5702981-5703000 | MS.gene28824:CDS | 45.0% | |
GTTCCTGTCACAAAGTTTGG+TGG | - | chr7.4:5705153-5705172 | MS.gene28824:CDS | 45.0% | |
TGCTGAAAGTGGCTCAACAA+AGG | - | chr7.4:5702628-5702647 | MS.gene28824:CDS | 45.0% | |
TGGTGCTTTCAACTGTCAAG+GGG | - | chr7.4:5704891-5704910 | MS.gene28824:CDS | 45.0% | |
TTAAACGTGACTCCGTGTGT+CGG | + | chr7.4:5704773-5704792 | None:intergenic | 45.0% | |
TTGCCACCAAACTTTGTGAC+AGG | + | chr7.4:5705159-5705178 | None:intergenic | 45.0% | |
TTGCTTACCAACTCTTCCCA+TGG | + | chr7.4:5704150-5704169 | None:intergenic | 45.0% | |
! | CCCCTAAACTTGTGCTCTTT+TGG | + | chr7.4:5704928-5704947 | None:intergenic | 45.0% |
! | GAGGGAAAGTTTAAGGTGAG+AGG | - | chr7.4:5702206-5702225 | MS.gene28824:CDS | 45.0% |
! | GTGATCCAATGGGAGCTTTT+TGG | - | chr7.4:5704317-5704336 | MS.gene28824:CDS | 45.0% |
!! | AAACTTTCACCTGGCCTTGA+TGG | - | chr7.4:5703442-5703461 | MS.gene28824:CDS | 45.0% |
!! | CTTGGTGGTGAACAAATGAC+TGG | - | chr7.4:5702977-5702996 | MS.gene28824:CDS | 45.0% |
!! | ATATGTAAATAAAATAAAAA+TGG | - | chr7.4:5704234-5704253 | MS.gene28824:CDS | 5.0% |
AGGCCAGGTGAAAGTTTGCA+AGG | + | chr7.4:5703439-5703458 | None:intergenic | 50.0% | |
CTTTCAACTGTCAAGGGGCA+GGG | - | chr7.4:5704896-5704915 | MS.gene28824:CDS | 50.0% | |
GCTCCCATTGGATCACCATT+AGG | + | chr7.4:5704313-5704332 | None:intergenic | 50.0% | |
GGCATGCATTATGTGGTGCT+TGG | - | chr7.4:5703368-5703387 | MS.gene28824:intron | 50.0% | |
GGCCAGGTGAAAGTTTGCAA+GGG | + | chr7.4:5703438-5703457 | None:intergenic | 50.0% | |
GGCTCAAGAGCTATTTGTGG+TGG | - | chr7.4:5704454-5704473 | MS.gene28824:CDS | 50.0% | |
GTCCCTTGCAAACTTTCACC+TGG | - | chr7.4:5703433-5703452 | MS.gene28824:CDS | 50.0% | |
GTTCCTTGGATTGATGAGGC+TGG | - | chr7.4:5705387-5705406 | MS.gene28824:CDS | 50.0% | |
TCAACGGTTGTGGAATTCGG+TGG | + | chr7.4:5702152-5702171 | None:intergenic | 50.0% | |
TCCATTGTTCCATCAAGGCC+AGG | + | chr7.4:5703454-5703473 | None:intergenic | 50.0% | |
TGGTGGTCTACTCAATGGGT+AGG | - | chr7.4:5702458-5702477 | MS.gene28824:CDS | 50.0% | |
TTGCTGAATCTGGCGTCACA+GGG | - | chr7.4:5703566-5703585 | MS.gene28824:CDS | 50.0% | |
! | AGGTGGGGCATTTGAATCAG+AGG | + | chr7.4:5702297-5702316 | None:intergenic | 50.0% |
! | CAAAAGGCAGCGTTGAACCA+AGG | - | chr7.4:5702876-5702895 | MS.gene28824:intron | 50.0% |
! | GCTGGCTCAAGAGCTATTTG+TGG | - | chr7.4:5704451-5704470 | MS.gene28824:CDS | 50.0% |
! | GGCTGGTGGTGTTTCTGATT+TGG | - | chr7.4:5705404-5705423 | MS.gene28824:CDS | 50.0% |
! | GGGTAAGGCAGAAGAGTATG+TGG | - | chr7.4:5705032-5705051 | MS.gene28824:CDS | 50.0% |
! | GGTGGGGCATTTGAATCAGA+GGG | + | chr7.4:5702296-5702315 | None:intergenic | 50.0% |
!! | ACCTGGCCTTGATGGAACAA+TGG | - | chr7.4:5703450-5703469 | MS.gene28824:CDS | 50.0% |
!! | GGATGGTGCTGATCATAACG+AGG | - | chr7.4:5702937-5702956 | MS.gene28824:CDS | 50.0% |
!! | GTTCTGAAGTGGCGTTTGAG+TGG | - | chr7.4:5705337-5705356 | MS.gene28824:CDS | 50.0% |
ACTGGAAGGCTTCGTAGGCT+TGG | - | chr7.4:5702995-5703014 | MS.gene28824:CDS | 55.0% | |
CCACCAGCCTCATCAATCCA+AGG | + | chr7.4:5705393-5705412 | None:intergenic | 55.0% | |
CCTTGGATTGATGAGGCTGG+TGG | - | chr7.4:5705390-5705409 | MS.gene28824:CDS | 55.0% | |
CTTGCTGAATCTGGCGTCAC+AGG | - | chr7.4:5703565-5703584 | MS.gene28824:CDS | 55.0% | |
GAAGTGGCGTTTGAGTGGCT+GGG | - | chr7.4:5705342-5705361 | MS.gene28824:CDS | 55.0% | |
GCATTATGTGGTGCTTGGGG+TGG | - | chr7.4:5703373-5703392 | MS.gene28824:intron | 55.0% | |
GCTTTCAACTGTCAAGGGGC+AGG | - | chr7.4:5704895-5704914 | MS.gene28824:CDS | 55.0% | |
TGAAGTGGCGTTTGAGTGGC+TGG | - | chr7.4:5705341-5705360 | MS.gene28824:CDS | 55.0% | |
TGCTGAATCTGGCGTCACAG+GGG | - | chr7.4:5703567-5703586 | MS.gene28824:CDS | 55.0% | |
! | TGTGTGCAGGGGACGACTTT+TGG | - | chr7.4:5704278-5704297 | MS.gene28824:CDS | 55.0% |
!! | AGGCTTCGTAGGCTTGGTGA+AGG | - | chr7.4:5703001-5703020 | MS.gene28824:CDS | 55.0% |
CAACTGTCAAGGGGCAGGGT+GGG | - | chr7.4:5704900-5704919 | MS.gene28824:CDS | 60.0% | |
GCGTTTGAGTGGCTGGGTGA+TGG | - | chr7.4:5705348-5705367 | MS.gene28824:CDS | 60.0% | |
TCAACTGTCAAGGGGCAGGG+TGG | - | chr7.4:5704899-5704918 | MS.gene28824:CDS | 60.0% | |
GTGGTGCTTGGGGTGGTGTG+AGG | - | chr7.4:5703380-5703399 | MS.gene28824:intron | 65.0% | |
GCTTGGGGTGGTGTGAGGCC+AGG | - | chr7.4:5703385-5703404 | MS.gene28824:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 5702143 | 5705440 | 5702143 | ID=MS.gene28824 |
chr7.4 | mRNA | 5702143 | 5705440 | 5702143 | ID=MS.gene28824.t1;Parent=MS.gene28824 |
chr7.4 | exon | 5703974 | 5705440 | 5703974 | ID=MS.gene28824.t1.exon1;Parent=MS.gene28824.t1 |
chr7.4 | CDS | 5703974 | 5705440 | 5703974 | ID=cds.MS.gene28824.t1;Parent=MS.gene28824.t1 |
chr7.4 | exon | 5703422 | 5703599 | 5703422 | ID=MS.gene28824.t1.exon2;Parent=MS.gene28824.t1 |
chr7.4 | CDS | 5703422 | 5703599 | 5703422 | ID=cds.MS.gene28824.t1;Parent=MS.gene28824.t1 |
chr7.4 | exon | 5702929 | 5703296 | 5702929 | ID=MS.gene28824.t1.exon3;Parent=MS.gene28824.t1 |
chr7.4 | CDS | 5702929 | 5703296 | 5702929 | ID=cds.MS.gene28824.t1;Parent=MS.gene28824.t1 |
chr7.4 | exon | 5702143 | 5702706 | 5702143 | ID=MS.gene28824.t1.exon4;Parent=MS.gene28824.t1 |
chr7.4 | CDS | 5702143 | 5702706 | 5702143 | ID=cds.MS.gene28824.t1;Parent=MS.gene28824.t1 |
Gene Sequence |
Protein sequence |