AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28824


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28824.t1 MTR_7g106910 92.666 859 62 1 1 858 1 859 0.0 1647
MS.gene28824.t1 MTR_8g088020 86.830 858 94 3 1 858 1 839 0.0 1549
MS.gene28824.t1 MTR_1g097450 84.455 862 122 2 1 858 1 854 0.0 1513
MS.gene28824.t1 MTR_7g109790 91.243 354 24 1 502 855 9 355 0.0 666
MS.gene28824.t1 MTR_3g077280 41.860 860 397 13 1 844 1 773 0.0 664
MS.gene28824.t1 MTR_6g004880 51.805 471 217 6 382 844 306 774 3.17e-164 497
MS.gene28824.t1 MTR_6g004880 40.299 335 155 6 1 307 1 318 2.82e-65 234
MS.gene28824.t1 MTR_4g105250 50.743 471 221 7 383 844 297 765 2.86e-161 489
MS.gene28824.t1 MTR_4g105250 43.082 318 160 7 1 307 1 308 1.60e-67 240
MS.gene28824.t1 MTR_4g115330 36.585 492 292 8 367 849 180 660 7.69e-96 315
MS.gene28824.t1 MTR_4g115330 38.318 214 111 4 98 302 1 202 1.11e-37 151
MS.gene28824.t1 MTR_4g115330 36.585 492 292 8 367 849 305 785 4.20e-95 316
MS.gene28824.t1 MTR_4g115330 37.619 210 110 4 102 302 130 327 6.82e-35 143
MS.gene28824.t1 MTR_7g091880 37.205 508 277 9 363 843 263 755 9.42e-95 314
MS.gene28824.t1 MTR_7g091880 32.226 301 174 4 18 310 7 285 1.11e-40 161
MS.gene28824.t1 MTR_5g096820 39.269 438 247 7 388 819 296 720 8.43e-94 311
MS.gene28824.t1 MTR_5g096820 33.198 247 141 3 71 299 42 282 1.01e-37 152
MS.gene28824.t1 MTR_3g075510 37.093 461 267 8 406 858 306 751 7.20e-91 303
MS.gene28824.t1 MTR_3g075510 32.192 292 150 4 27 298 16 279 2.41e-39 157
MS.gene28824.t1 MTR_1g052515 38.876 445 253 7 406 843 293 725 4.47e-90 301
MS.gene28824.t1 MTR_1g052515 36.481 233 140 2 71 299 42 270 1.51e-40 160
MS.gene28824.t1 MTR_5g096820 44.371 302 155 4 388 686 296 587 6.96e-79 268
MS.gene28824.t1 MTR_5g096820 33.198 247 141 3 71 299 42 282 5.24e-38 151
MS.gene28824.t1 MTR_3g075510 42.628 312 166 4 406 714 306 607 1.92e-75 259
MS.gene28824.t1 MTR_3g075510 32.192 292 150 4 27 298 16 279 1.15e-39 156
MS.gene28824.t1 MTR_5g065520 57.576 66 28 0 621 686 219 284 5.17e-20 94.0
MS.gene28824.t1 MTR_3g089400 82.051 39 7 0 593 631 354 392 5.72e-14 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28824.t1 AT4G01970 57.394 852 343 12 18 858 34 876 0.0 1010
MS.gene28824.t1 AT4G01970 57.394 852 343 12 18 858 81 923 0.0 1009
MS.gene28824.t1 AT5G40390 52.268 463 217 4 384 844 310 770 4.35e-171 515
MS.gene28824.t1 AT5G40390 42.424 297 147 4 18 302 22 306 9.55e-64 229
MS.gene28824.t1 AT5G20250 37.991 458 269 7 388 842 287 732 2.08e-91 305
MS.gene28824.t1 AT5G20250 33.898 295 157 3 20 299 9 280 8.76e-43 167
MS.gene28824.t1 AT5G20250 37.991 458 269 7 388 842 287 732 2.08e-91 305
MS.gene28824.t1 AT5G20250 33.898 295 157 3 20 299 9 280 8.76e-43 167
MS.gene28824.t1 AT5G20250 37.991 458 269 7 388 842 287 732 2.08e-91 305
MS.gene28824.t1 AT5G20250 33.898 295 157 3 20 299 9 280 8.76e-43 167
MS.gene28824.t1 AT3G57520 34.109 516 292 10 363 847 264 762 3.02e-91 305
MS.gene28824.t1 AT3G57520 36.250 240 136 3 71 299 42 275 7.70e-41 161
MS.gene28824.t1 AT5G20250 37.991 458 269 7 388 842 382 827 6.76e-91 306
MS.gene28824.t1 AT5G20250 34.237 295 156 4 20 299 104 375 1.84e-42 167
MS.gene28824.t1 AT1G55740 38.530 449 255 8 403 842 303 739 3.09e-88 296
MS.gene28824.t1 AT1G55740 31.834 289 166 5 20 299 9 275 7.88e-39 155
MS.gene28824.t1 AT3G57520 35.381 407 243 7 363 766 264 653 3.57e-78 267
MS.gene28824.t1 AT3G57520 36.250 240 136 3 71 299 42 275 2.72e-41 162
MS.gene28824.t1 AT3G57520 38.333 300 168 5 363 659 264 549 5.21e-61 217
MS.gene28824.t1 AT3G57520 36.250 240 136 3 71 299 42 275 7.59e-42 162

Find 195 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCTAAACTTGTGCTCTTT+TGG 0.125940 7.4:+5702636 None:intergenic
AAACAACTGTTCTCAAAATT+TGG 0.128848 7.4:-5702941 MS.gene28824:CDS
AATTGAATTGGTTCAGATTT+TGG 0.163451 7.4:+5702468 None:intergenic
CCAAATTTAGTTGATAAATT+TGG 0.169026 7.4:-5704779 MS.gene28824:CDS
AGAGGAAAATGTATGCATTT+TGG 0.172365 7.4:+5703005 None:intergenic
TTTATCTGAGGGAAAGTTTA+AGG 0.176920 7.4:-5705362 MS.gene28824:CDS
CCAAATTTATCAACTAAATT+TGG 0.182749 7.4:+5704779 None:intergenic
TCCATTTCCATTAAAATTCT+TGG 0.200527 7.4:+5703495 None:intergenic
ATCATTCCTATAATTGAAAA+AGG 0.215479 7.4:-5705004 MS.gene28824:CDS
ATTGTTCCTATAATAGTTTA+TGG 0.227178 7.4:-5703199 MS.gene28824:CDS
TCCCATCCATAAACTATTAT+AGG 0.237992 7.4:+5703193 None:intergenic
ACTATTGGCTTGTAGCATTC+AGG 0.242224 7.4:+5702609 None:intergenic
AACATCAAATTTGCAGCAAT+TGG 0.252859 7.4:-5702384 MS.gene28824:CDS
TCTCACAAAGGTGGTTTCTT+TGG 0.256159 7.4:-5705217 MS.gene28824:CDS
ACAGCATAAGATTTGATTTC+AGG 0.256375 7.4:+5705028 None:intergenic
TATGAAAGTGGATTGTTATT+AGG 0.257420 7.4:-5704521 MS.gene28824:CDS
CCATTCAATTGAAACTTCTT+TGG 0.259667 7.4:+5702246 None:intergenic
AAGAGGCTTATAGTGTTATA+AGG 0.261390 7.4:-5704844 MS.gene28824:CDS
ACATTATCACTCAAATAAAT+TGG 0.261796 7.4:+5703083 None:intergenic
GGATTAAAAGGAGGTGAATT+AGG 0.268125 7.4:+5704497 None:intergenic
TGAAAGTGGTGCAAAGATTA+AGG 0.276825 7.4:-5702310 MS.gene28824:CDS
GGAATTGAACATGAGCATTT+GGG 0.290038 7.4:-5704446 MS.gene28824:CDS
TTTATCTAAGAGTTCTGATT+TGG 0.304861 7.4:-5704402 MS.gene28824:CDS
TTTGTTCCTGTCACAAAGTT+TGG 0.307091 7.4:-5702411 MS.gene28824:CDS
TGAAGTGGCGTTTGAGTGGC+TGG 0.307659 7.4:-5702220 MS.gene28824:CDS
ATGCTCATGTTCAATTCCTT+TGG 0.319521 7.4:+5704451 None:intergenic
GAAGAAAGAAGCATCTGATT+TGG 0.320028 7.4:-5702550 MS.gene28824:CDS
CACTCTTATCTTGCTGAATC+TGG 0.323017 7.4:-5704005 MS.gene28824:CDS
AGGAATTGAACATGAGCATT+TGG 0.323538 7.4:-5704447 MS.gene28824:CDS
CCAAAGAAGTTTCAATTGAA+TGG 0.327615 7.4:-5702246 MS.gene28824:CDS
AAAGAAATTGATGATCTCTT+TGG 0.331904 7.4:-5704347 MS.gene28824:CDS
TGGTGGAACAATTCTTGATT+TGG 0.333054 7.4:-5702340 MS.gene28824:CDS
GGTGCAAAGATTAAGGTTAA+AGG 0.343844 7.4:-5702303 MS.gene28824:CDS
AAACTTTCACCTGGCCTTGA+TGG 0.345335 7.4:-5704119 MS.gene28824:CDS
CCCAAAAGAGCACAAGTTTA+GGG 0.345555 7.4:-5702637 MS.gene28824:CDS
ACCCAAAAGAGCACAAGTTT+AGG 0.346754 7.4:-5702638 MS.gene28824:CDS
TGTGTGCAGGGGACGACTTT+TGG 0.348233 7.4:-5703283 MS.gene28824:intron
GTATTAAGATGTGTGGTTCC+TGG 0.349633 7.4:+5704158 None:intergenic
TGATAGATTGATGAATTCAT+TGG 0.350934 7.4:-5705173 MS.gene28824:CDS
AAGTTTGCAAGGGACAATTT+TGG 0.353779 7.4:+5704136 None:intergenic
AATTCATTGGGTAGTTTCAA+TGG 0.355636 7.4:-5705160 MS.gene28824:CDS
TGTTGCAAGGAAAAGGAGTA+TGG 0.358061 7.4:-5704278 MS.gene28824:CDS
TTGGATCACCATTAGGATCT+TGG 0.360993 7.4:+5703258 None:intergenic
TCTATCAGATGGGGTTTCAT+TGG 0.361535 7.4:+5705189 None:intergenic
GGCTGGTGGTGTTTCTGATT+TGG 0.365056 7.4:-5702157 MS.gene28824:CDS
AAAATTGTTGAAGGTTCAAT+TGG 0.374085 7.4:-5704071 MS.gene28824:CDS
GCATGCATTATGTGGTGCTT+GGG 0.377719 7.4:-5704192 MS.gene28824:CDS
ACTCAATGGGTAGGTAAATC+TGG 0.379853 7.4:-5705094 MS.gene28824:CDS
GCTTGGGGTGGTGTGAGGCC+AGG 0.381667 7.4:-5704176 MS.gene28824:CDS
GATGCAAAGAATCTTGTTCT+TGG 0.383283 7.4:-5704602 MS.gene28824:CDS
GAATATGTGTGTGATAAATA+TGG 0.383570 7.4:-5703571 MS.gene28824:CDS
CTTGCTGAATCTGGCGTCAC+AGG 0.389510 7.4:-5703996 MS.gene28824:CDS
ATAAATTTGGTTGGTGTACT+TGG 0.391671 7.4:-5704766 MS.gene28824:CDS
AAATGACTTTCAATGTTCCT+TGG 0.394355 7.4:-5702188 MS.gene28824:CDS
TAGCACAAATATGGTCTGAT+TGG 0.396236 7.4:+5703141 None:intergenic
AAGAAAGAAGCATCTGATTT+GGG 0.399298 7.4:-5702549 MS.gene28824:CDS
GAGGACTAAGTTCAAAGGTT+TGG 0.399831 7.4:-5704231 MS.gene28824:CDS
CATGAAATTTAGCACAAATA+TGG 0.402279 7.4:+5703132 None:intergenic
GCTTTCAACTGTCAAGGGGC+AGG 0.405154 7.4:-5702666 MS.gene28824:CDS
AGATCAACGGTTGTGGAATT+CGG 0.405372 7.4:+5705409 None:intergenic
GCCTCTTTCATCAAATCATA+AGG 0.410886 7.4:+5704860 None:intergenic
ACAAATGATTCGACCTGATT+GGG 0.417373 7.4:-5703171 MS.gene28824:CDS
ATCTGGTTCTGATTTACAAA+TGG 0.419921 7.4:-5705077 MS.gene28824:CDS
GGCATGCATTATGTGGTGCT+TGG 0.419974 7.4:-5704193 MS.gene28824:CDS
GACAAATGATTCGACCTGAT+TGG 0.425731 7.4:-5703172 MS.gene28824:CDS
TCCATTAAAATTCTTGGCAA+TGG 0.426719 7.4:+5703501 None:intergenic
TATTTAACTGTTAATCCTGT+TGG 0.427385 7.4:-5704734 MS.gene28824:CDS
TCCTTATGATTTGATGAAAG+AGG 0.429052 7.4:-5704861 MS.gene28824:CDS
TAACCCTTCATAGTAAGCTT+TGG 0.430154 7.4:+5703531 None:intergenic
GGTTGAATGATAAATTGAAT+TGG 0.432932 7.4:+5702456 None:intergenic
AAACTTGGTGGTCTACTCAA+TGG 0.435481 7.4:-5705108 MS.gene28824:CDS
TGGATGGCAAAGCATTAGTT+TGG 0.435861 7.4:-5704645 MS.gene28824:CDS
ACATGCACAGTACCAACTAT+TGG 0.438454 7.4:+5702594 None:intergenic
AGGCTTTCACAAGGGATTTG+AGG 0.440238 7.4:-5704250 MS.gene28824:CDS
CTATTGGCTTGTAGCATTCA+GGG 0.449437 7.4:+5702610 None:intergenic
GCTCCCATTGGATCACCATT+AGG 0.450911 7.4:+5703251 None:intergenic
AGAGGCTTATAGTGTTATAA+GGG 0.452259 7.4:-5704843 MS.gene28824:CDS
TTGCTGAATCTGGCGTCACA+GGG 0.453056 7.4:-5703995 MS.gene28824:CDS
TTGAAAAGACAATCTCTAGT+AGG 0.453990 7.4:+5702981 None:intergenic
TTCCTATAATAGTTTATGGA+TGG 0.456061 7.4:-5703195 MS.gene28824:CDS
CAATGTTCCTTGGATTGATG+AGG 0.456091 7.4:-5702178 MS.gene28824:CDS
ATTTACAAATGGAAACTCAA+TGG 0.457763 7.4:-5705066 MS.gene28824:CDS
AGGTTCGTTATCATTGATGA+TGG 0.458921 7.4:-5704665 MS.gene28824:CDS
CTTTCAACTGTCAAGGGGCA+GGG 0.461758 7.4:-5702665 MS.gene28824:CDS
GAAATTGATGATCTCTTTGG+TGG 0.465614 7.4:-5704344 MS.gene28824:CDS
CTTGCCAAAGCTTACTATGA+AGG 0.466120 7.4:-5703535 MS.gene28824:CDS
ACATCAAATTTGCAGCAATT+GGG 0.466985 7.4:-5702383 MS.gene28824:CDS
GATTGGAACATGTCCCAATC+AGG 0.467413 7.4:+5703158 None:intergenic
AAACAGTATGGAGGAGTGAT+TGG 0.468721 7.4:-5702690 MS.gene28824:intron
AAGATTAAGGTTAAAGGTGG+TGG 0.470866 7.4:-5702297 MS.gene28824:CDS
GCTGTGGTTAAAATTGTTGA+AGG 0.473872 7.4:-5704080 MS.gene28824:CDS
TTTGATGAGATCAACGGTTG+TGG 0.474107 7.4:+5705402 None:intergenic
GGAAAAGGAGTATGGTTTGA+AGG 0.477848 7.4:-5704270 MS.gene28824:CDS
TCCTATAATAGTTTATGGAT+GGG 0.485801 7.4:-5703194 MS.gene28824:CDS
GTCCCTTGCAAACTTTCACC+TGG 0.492351 7.4:-5704128 MS.gene28824:CDS
GATAGATTGATGAATTCATT+GGG 0.493686 7.4:-5705172 MS.gene28824:CDS
TGGAACAAAGCAAGTTTCCA+TGG 0.495682 7.4:-5703431 MS.gene28824:CDS
TATGTGTGGCATGCATTATG+TGG 0.498900 7.4:-5704200 MS.gene28824:CDS
ACTGGAAGGCTTCGTAGGCT+TGG 0.499891 7.4:-5704566 MS.gene28824:CDS
AACTTGGTGGTCTACTCAAT+GGG 0.501194 7.4:-5705107 MS.gene28824:CDS
TGGAAACTTGCTTTGTTCCA+AGG 0.501688 7.4:+5703434 None:intergenic
AAGCTTGTGTTGCAAGGAAA+AGG 0.501879 7.4:-5704285 MS.gene28824:CDS
TCCATTGTTCCATCAAGGCC+AGG 0.507048 7.4:+5704110 None:intergenic
GAATTCATCAATCTATCAGA+TGG 0.508626 7.4:+5705178 None:intergenic
TCATTATTTGATTTATCTGA+GGG 0.509766 7.4:-5705373 MS.gene28824:CDS
CAAGTTTCCATGGGAAGAGT+TGG 0.510287 7.4:-5703421 MS.gene28824:intron
GAACTGAAAGAAACATTCTC+AGG 0.511175 7.4:+5705310 None:intergenic
TTGCCACCAAACTTTGTGAC+AGG 0.514356 7.4:+5702405 None:intergenic
ATTTGTGCTAAATTTCATGC+TGG 0.516195 7.4:-5703128 MS.gene28824:CDS
TTGCTTACCAACTCTTCCCA+TGG 0.516546 7.4:+5703414 None:intergenic
GCGATTCACTTGAATAAGCA+AGG 0.518180 7.4:+5702268 None:intergenic
ATTAAGGAGTTGATTTCCAA+AGG 0.521590 7.4:-5704467 MS.gene28824:CDS
CAACTGTCAAGGGGCAGGGT+GGG 0.523724 7.4:-5702661 MS.gene28824:CDS
GATCTTCCATTGTTCCATCA+AGG 0.523766 7.4:+5704105 None:intergenic
GTTCCTGTCACAAAGTTTGG+TGG 0.523854 7.4:-5702408 MS.gene28824:CDS
GTGGAATTCGGTGGAGCCAT+GGG 0.526067 7.4:+5705421 None:intergenic
TGCATGTAACTGAAGTTGAA+TGG 0.527632 7.4:-5702578 MS.gene28824:CDS
ATTGGTGCTTTCAACTGTCA+AGG 0.528036 7.4:-5702672 MS.gene28824:CDS
GAATGCTACAAGCCAATAGT+TGG 0.529509 7.4:-5702606 MS.gene28824:CDS
GCGTTTGAGTGGCTGGGTGA+TGG 0.533274 7.4:-5702213 MS.gene28824:CDS
CCAAAAGAGCACAAGTTTAG+GGG 0.533366 7.4:-5702636 MS.gene28824:CDS
GCTGGCTCAAGAGCTATTTG+TGG 0.541307 7.4:-5703110 MS.gene28824:CDS
GTGGTGCTTGGGGTGGTGTG+AGG 0.542369 7.4:-5704181 MS.gene28824:CDS
TAAATTTGGTTGGTGTACTT+GGG 0.545091 7.4:-5704765 MS.gene28824:CDS
GTCATTATTTGATTTATCTG+AGG 0.545173 7.4:-5705374 MS.gene28824:CDS
AATTCATCAATCTATCAGAT+GGG 0.545924 7.4:+5705179 None:intergenic
AGATCCTAATGGTGATCCAA+TGG 0.546823 7.4:-5703255 MS.gene28824:CDS
TCGTTATCATTGATGATGGA+TGG 0.546866 7.4:-5704661 MS.gene28824:CDS
GCATGTAACTGAAGTTGAAT+GGG 0.548533 7.4:-5702577 MS.gene28824:CDS
AGACAATCTCTAGTAGGAAG+AGG 0.549867 7.4:+5702987 None:intergenic
TGTGGAATTCGGTGGAGCCA+TGG 0.550203 7.4:+5705420 None:intergenic
TCAATTGAATGGTTCTGAAG+TGG 0.554683 7.4:-5702235 MS.gene28824:CDS
TTGGTGCTTTCAACTGTCAA+GGG 0.555981 7.4:-5702671 MS.gene28824:CDS
GTTCCTTGGATTGATGAGGC+TGG 0.557186 7.4:-5702174 MS.gene28824:CDS
AGAAGCATCTGATTTGGGTA+AGG 0.557243 7.4:-5702544 MS.gene28824:CDS
AAGAAACTTGTGTTCCCTGA+TGG 0.557362 7.4:-5703035 MS.gene28824:CDS
CATGCATTATGTGGTGCTTG+GGG 0.560019 7.4:-5704191 MS.gene28824:CDS
ATTTAGTTGATAAATTTGGT+TGG 0.560697 7.4:-5704775 MS.gene28824:CDS
ATTTATTTGAGTGATAATGT+TGG 0.562359 7.4:-5703080 MS.gene28824:CDS
AGATTAAGGTTAAAGGTGGT+GGG 0.562856 7.4:-5702296 MS.gene28824:CDS
GATCCTAATGGTGATCCAAT+GGG 0.563604 7.4:-5703254 MS.gene28824:CDS
AAACATTCTCAGGAACATCA+TGG 0.565376 7.4:+5705320 None:intergenic
TTGCCAAAGCTTACTATGAA+GGG 0.565388 7.4:-5703534 MS.gene28824:CDS
CAAAATTTGGAACTTCAACA+AGG 0.568909 7.4:-5702928 MS.gene28824:intron
AGGCCAGGTGAAAGTTTGCA+AGG 0.571791 7.4:+5704125 None:intergenic
GTCATGATTTATGCTGAAAG+TGG 0.572764 7.4:-5704944 MS.gene28824:CDS
GCAAAGAATCTTGTTCTTGG+TGG 0.572951 7.4:-5704599 MS.gene28824:CDS
CAAAAGGCAGCGTTGAACCA+AGG 0.573876 7.4:-5704685 MS.gene28824:CDS
TTCAGCAAGATAAGAGTGCA+TGG 0.574107 7.4:+5704010 None:intergenic
AAATGACTGGAAGGCTTCGT+AGG 0.575794 7.4:-5704571 MS.gene28824:CDS
GATTTGAGGACTAAGTTCAA+AGG 0.583446 7.4:-5704236 MS.gene28824:CDS
GGAACAAAGCAAGTTTCCAT+GGG 0.587236 7.4:-5703430 MS.gene28824:CDS
TTGACAAACATGTTCAATAG+TGG 0.587593 7.4:-5702360 MS.gene28824:CDS
ACCTGGCCTTGATGGAACAA+TGG 0.589366 7.4:-5704111 MS.gene28824:CDS
AAAATTGTATAGCTCAAATG+TGG 0.591781 7.4:+5702431 None:intergenic
AGGTGGGGCATTTGAATCAG+AGG 0.593587 7.4:+5705267 None:intergenic
GGTGGGGCATTTGAATCAGA+GGG 0.593672 7.4:+5705268 None:intergenic
TGGCAAAGCATTAGTTTGGA+TGG 0.596303 7.4:-5704641 MS.gene28824:CDS
ATGACATGATCATCAGAACC+TGG 0.596806 7.4:+5704962 None:intergenic
GGCTCAAGAGCTATTTGTGG+TGG 0.597968 7.4:-5703107 MS.gene28824:CDS
GATTTGGAATATGTTGAAAG+TGG 0.598008 7.4:-5702324 MS.gene28824:CDS
TCAACTGTCAAGGGGCAGGG+TGG 0.598050 7.4:-5702662 MS.gene28824:CDS
GAATTGAACATGAGCATTTG+GGG 0.600360 7.4:-5704445 MS.gene28824:CDS
ATGGTTTGAAGGCTTTCACA+AGG 0.601600 7.4:-5704259 MS.gene28824:CDS
CTTGGTGGTGAACAAATGAC+TGG 0.601615 7.4:-5704584 MS.gene28824:CDS
TGGTTTGAAGGCTTTCACAA+GGG 0.602786 7.4:-5704258 MS.gene28824:CDS
GGGTAAGGCAGAAGAGTATG+TGG 0.602965 7.4:-5702529 MS.gene28824:CDS
GCATTATGTGGTGCTTGGGG+TGG 0.604624 7.4:-5704188 MS.gene28824:CDS
GAGGGAAAGTTTAAGGTGAG+AGG 0.604806 7.4:-5705355 MS.gene28824:CDS
ACAAACATGTTCAATAGTGG+TGG 0.605815 7.4:-5702357 MS.gene28824:CDS
CTTCATAGTAAGCTTTGGCA+AGG 0.607720 7.4:+5703536 None:intergenic
TCATCAATGATAACGAACCT+TGG 0.607763 7.4:+5704668 None:intergenic
TGCTGAAAGTGGCTCAACAA+AGG 0.611900 7.4:-5704933 MS.gene28824:CDS
TGGTGGTCTACTCAATGGGT+AGG 0.618024 7.4:-5705103 MS.gene28824:CDS
GCAAAGATTAAGGTTAAAGG+TGG 0.619493 7.4:-5702300 MS.gene28824:CDS
GGCCAGGTGAAAGTTTGCAA+GGG 0.623453 7.4:+5704126 None:intergenic
TCAGGAACATCATGGAACAA+AGG 0.625935 7.4:+5705328 None:intergenic
AGGCTTCGTAGGCTTGGTGA+AGG 0.628128 7.4:-5704560 MS.gene28824:CDS
GTGGTGAACAAATGACTGGA+AGG 0.628570 7.4:-5704580 MS.gene28824:CDS
GAAGTGGCGTTTGAGTGGCT+GGG 0.630895 7.4:-5702219 MS.gene28824:CDS
TCAACGGTTGTGGAATTCGG+TGG 0.631067 7.4:+5705412 None:intergenic
GTTCTGAAGTGGCGTTTGAG+TGG 0.631457 7.4:-5702224 MS.gene28824:CDS
TCATATATAAAACAGTATGG+AGG 0.631649 7.4:-5702699 MS.gene28824:intron
CAAAAGAGCACAAGTTTAGG+GGG 0.633226 7.4:-5702635 MS.gene28824:CDS
TGGTGCTTTCAACTGTCAAG+GGG 0.636041 7.4:-5702670 MS.gene28824:CDS
CCTTGGATTGATGAGGCTGG+TGG 0.637377 7.4:-5702171 MS.gene28824:CDS
CCACCAGCCTCATCAATCCA+AGG 0.638283 7.4:+5702171 None:intergenic
TTGTATAGCTCAAATGTGGA+TGG 0.640248 7.4:+5702435 None:intergenic
ATTCATCAATCTATCAGATG+GGG 0.644616 7.4:+5705180 None:intergenic
ATGTGGAAGCTTGTGTTGCA+AGG 0.653096 7.4:-5704291 MS.gene28824:CDS
GTTTGGATGATGTTTATGTG+TGG 0.662366 7.4:-5704214 MS.gene28824:CDS
TATGTGTGTGATAAATATGG+AGG 0.686908 7.4:-5703568 MS.gene28824:CDS
TGCTGAATCTGGCGTCACAG+GGG 0.702078 7.4:-5703994 MS.gene28824:CDS
AACAATGGAAGATCTTGCTG+TGG 0.739747 7.4:-5704096 MS.gene28824:CDS
GGATGGTGCTGATCATAACG+AGG 0.786161 7.4:-5704624 MS.gene28824:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTACATTATTTTTTTA+AGG - chr7.4:5704802-5704821 MS.gene28824:CDS 10.0%
!! TAAAAAAAGCGATTATTATT+TGG + chr7.4:5703955-5703974 None:intergenic 15.0%
!! TAACTAACTATTAGTTAATT+TGG + chr7.4:5703697-5703716 None:intergenic 15.0%
!! TATGTACAAAAAAGTTTATA+AGG + chr7.4:5703788-5703807 None:intergenic 15.0%
!!! AATATGCAAAGTATTTTATT+AGG + chr7.4:5704703-5704722 None:intergenic 15.0%
!!! CAATGTATTTGATTTAAAAA+AGG + chr7.4:5703870-5703889 None:intergenic 15.0%
!!! TTTTCATATATAAAACAGTA+TGG - chr7.4:5704859-5704878 MS.gene28824:CDS 15.0%
!! AAGTTCAAAAAATATGAAAG+TGG - chr7.4:5703028-5703047 MS.gene28824:CDS 20.0%
!! ACATTATCACTCAAATAAAT+TGG + chr7.4:5704481-5704500 None:intergenic 20.0%
!! ATCATTCCTATAATTGAAAA+AGG - chr7.4:5702557-5702576 MS.gene28824:CDS 20.0%
!! ATTGTTCCTATAATAGTTTA+TGG - chr7.4:5704362-5704381 MS.gene28824:CDS 20.0%
!! CCAAATTTATCAACTAAATT+TGG + chr7.4:5702785-5702804 None:intergenic 20.0%
!! CTTTGCATATTTATTATTGA+TGG - chr7.4:5704712-5704731 MS.gene28824:CDS 20.0%
!! GTTATTACATAATAGCTTAT+AGG + chr7.4:5704834-5704853 None:intergenic 20.0%
!! TGTTGAAATATAATAGTTAG+CGG - chr7.4:5703747-5703766 MS.gene28824:intron 20.0%
!!! ATTTAGTTGATAAATTTGGT+TGG - chr7.4:5702786-5702805 MS.gene28824:intron 20.0%
!!! ATTTATTTGAGTGATAATGT+TGG - chr7.4:5704481-5704500 MS.gene28824:CDS 20.0%
!!! CCAAATTTAGTTGATAAATT+TGG - chr7.4:5702782-5702801 MS.gene28824:intron 20.0%
!!! CTAAAACCTTTTTCAATTAT+AGG + chr7.4:5702566-5702585 None:intergenic 20.0%
!!! CTATAATTGAAAAAGGTTTT+AGG - chr7.4:5702564-5702583 MS.gene28824:CDS 20.0%
!!! TCATTATTTGATTTATCTGA+GGG - chr7.4:5702188-5702207 MS.gene28824:CDS 20.0%
!!! TTAATCGTTTTTGGATTAAA+AGG + chr7.4:5703079-5703098 None:intergenic 20.0%
!!! TTTTAATCCAAAAACGATTA+AGG - chr7.4:5703078-5703097 MS.gene28824:CDS 20.0%
! AAAATTGTATAGCTCAAATG+TGG + chr7.4:5705133-5705152 None:intergenic 25.0%
! AAAATTGTTGAAGGTTCAAT+TGG - chr7.4:5703490-5703509 MS.gene28824:CDS 25.0%
! AAACAACTGTTCTCAAAATT+TGG - chr7.4:5704620-5704639 MS.gene28824:CDS 25.0%
! AATTCATCAATCTATCAGAT+GGG + chr7.4:5702385-5702404 None:intergenic 25.0%
! ATTTACAAATGGAAACTCAA+TGG - chr7.4:5702495-5702514 MS.gene28824:CDS 25.0%
! CATGAAATTTAGCACAAATA+TGG + chr7.4:5704432-5704451 None:intergenic 25.0%
! CATGGAATCATAAAAATCAT+TGG + chr7.4:5703536-5703555 None:intergenic 25.0%
! GAATATGTGTGTGATAAATA+TGG - chr7.4:5703990-5704009 MS.gene28824:CDS 25.0%
! GATAGATTGATGAATTCATT+GGG - chr7.4:5702389-5702408 MS.gene28824:CDS 25.0%
! GGTTGAATGATAAATTGAAT+TGG + chr7.4:5705108-5705127 None:intergenic 25.0%
! TATTTAACTGTTAATCCTGT+TGG - chr7.4:5702827-5702846 MS.gene28824:intron 25.0%
! TCATATATAAAACAGTATGG+AGG - chr7.4:5704862-5704881 MS.gene28824:CDS 25.0%
! TCCATTTCCATTAAAATTCT+TGG + chr7.4:5704069-5704088 None:intergenic 25.0%
! TCCTATAATAGTTTATGGAT+GGG - chr7.4:5704367-5704386 MS.gene28824:CDS 25.0%
! TGATAGATTGATGAATTCAT+TGG - chr7.4:5702388-5702407 MS.gene28824:CDS 25.0%
! TTCCTATAATAGTTTATGGA+TGG - chr7.4:5704366-5704385 MS.gene28824:CDS 25.0%
!! AAAAAGCAAGAACTTTTTGA+AGG + chr7.4:5702325-5702344 None:intergenic 25.0%
!! AAAGAAATTGATGATCTCTT+TGG - chr7.4:5703214-5703233 MS.gene28824:CDS 25.0%
!! GTCATTATTTGATTTATCTG+AGG - chr7.4:5702187-5702206 MS.gene28824:CDS 25.0%
!! TTTATCTAAGAGTTCTGATT+TGG - chr7.4:5703159-5703178 MS.gene28824:CDS 25.0%
!!! AATTGAATTGGTTCAGATTT+TGG + chr7.4:5705096-5705115 None:intergenic 25.0%
!!! AATTTTGGTATTAAGATGTG+TGG + chr7.4:5703413-5703432 None:intergenic 25.0%
!!! TATGAAAGTGGATTGTTATT+AGG - chr7.4:5703040-5703059 MS.gene28824:CDS 25.0%
AAATGACTTTCAATGTTCCT+TGG - chr7.4:5705373-5705392 MS.gene28824:CDS 30.0%
AACATCAAATTTGCAGCAAT+TGG - chr7.4:5705177-5705196 MS.gene28824:CDS 30.0%
AAGAGGCTTATAGTGTTATA+AGG - chr7.4:5702717-5702736 MS.gene28824:intron 30.0%
AATTCATTGGGTAGTTTCAA+TGG - chr7.4:5702401-5702420 MS.gene28824:CDS 30.0%
ACATCAAATTTGCAGCAATT+GGG - chr7.4:5705178-5705197 MS.gene28824:CDS 30.0%
AGAGGCTTATAGTGTTATAA+GGG - chr7.4:5702718-5702737 MS.gene28824:intron 30.0%
AGTGTTCAAAAAAGTGAATG+TGG - chr7.4:5703253-5703272 MS.gene28824:CDS 30.0%
ATTCATCAATCTATCAGATG+GGG + chr7.4:5702384-5702403 None:intergenic 30.0%
ATTTGTGCTAAATTTCATGC+TGG - chr7.4:5704433-5704452 MS.gene28824:CDS 30.0%
CCAAAGAAGTTTCAATTGAA+TGG - chr7.4:5705315-5705334 MS.gene28824:CDS 30.0%
CCATTCAATTGAAACTTCTT+TGG + chr7.4:5705318-5705337 None:intergenic 30.0%
GAATTCATCAATCTATCAGA+TGG + chr7.4:5702386-5702405 None:intergenic 30.0%
TATGCCAAACTTCAATACTA+GGG - chr7.4:5704677-5704696 MS.gene28824:CDS 30.0%
TATGTGTGTGATAAATATGG+AGG - chr7.4:5703993-5704012 MS.gene28824:CDS 30.0%
TCCATTAAAATTCTTGGCAA+TGG + chr7.4:5704063-5704082 None:intergenic 30.0%
TCCCATCCATAAACTATTAT+AGG + chr7.4:5704371-5704390 None:intergenic 30.0%
TCCTTATGATTTGATGAAAG+AGG - chr7.4:5702700-5702719 MS.gene28824:intron 30.0%
TTATGCCAAACTTCAATACT+AGG - chr7.4:5704676-5704695 MS.gene28824:CDS 30.0%
TTGAAAAGACAATCTCTAGT+AGG + chr7.4:5704583-5704602 None:intergenic 30.0%
TTGACAAACATGTTCAATAG+TGG - chr7.4:5705201-5705220 MS.gene28824:CDS 30.0%
TTTATCTGAGGGAAAGTTTA+AGG - chr7.4:5702199-5702218 MS.gene28824:CDS 30.0%
! ACAGCATAAGATTTGATTTC+AGG + chr7.4:5702536-5702555 None:intergenic 30.0%
! AGAGGAAAATGTATGCATTT+TGG + chr7.4:5704559-5704578 None:intergenic 30.0%
! ATAAATTTGGTTGGTGTACT+TGG - chr7.4:5702795-5702814 MS.gene28824:intron 30.0%
! ATCAACTCCTTAATCGTTTT+TGG + chr7.4:5703088-5703107 None:intergenic 30.0%
! ATTAAGGAGTTGATTTCCAA+AGG - chr7.4:5703094-5703113 MS.gene28824:CDS 30.0%
! CAAAATTTGGAACTTCAACA+AGG - chr7.4:5704633-5704652 MS.gene28824:CDS 30.0%
! GAGGAAAATGTATGCATTTT+GGG + chr7.4:5704558-5704577 None:intergenic 30.0%
! GATTTGGAATATGTTGAAAG+TGG - chr7.4:5705237-5705256 MS.gene28824:CDS 30.0%
! TAAATTTGGTTGGTGTACTT+GGG - chr7.4:5702796-5702815 MS.gene28824:intron 30.0%
! TCCATTGCCAAGAATTTTAA+TGG - chr7.4:5704059-5704078 MS.gene28824:CDS 30.0%
!! AAGAAAGAAGCATCTGATTT+GGG - chr7.4:5705012-5705031 MS.gene28824:CDS 30.0%
!! ACAGTTGTTTTGTCAAATAG+AGG + chr7.4:5704610-5704629 None:intergenic 30.0%
!! ATCGTTTTTGGATTAAAAGG+AGG + chr7.4:5703076-5703095 None:intergenic 30.0%
!! ATCTGGTTCTGATTTACAAA+TGG - chr7.4:5702484-5702503 MS.gene28824:CDS 30.0%
!! CAGTTGTTTTGTCAAATAGA+GGG + chr7.4:5704609-5704628 None:intergenic 30.0%
!! GCCAAGAATTTTAATGGAAA+TGG - chr7.4:5704065-5704084 MS.gene28824:CDS 30.0%
!! TAAAAATCATTGGCTTGATC+AGG + chr7.4:5703526-5703545 None:intergenic 30.0%
!!! TCTCAACACTTTTAGGTTAT+TGG - chr7.4:5702745-5702764 MS.gene28824:intron 30.0%
!!! TGCAATGATTTTTTCTTCCT+TGG - chr7.4:5704110-5704129 MS.gene28824:CDS 30.0%
AAACATTCTCAGGAACATCA+TGG + chr7.4:5702244-5702263 None:intergenic 35.0%
AAGATTAAGGTTAAAGGTGG+TGG - chr7.4:5705264-5705283 MS.gene28824:CDS 35.0%
ACAAACATGTTCAATAGTGG+TGG - chr7.4:5705204-5705223 MS.gene28824:CDS 35.0%
ACAAATGATTCGACCTGATT+GGG - chr7.4:5704390-5704409 MS.gene28824:CDS 35.0%
AGATTAAGGTTAAAGGTGGT+GGG - chr7.4:5705265-5705284 MS.gene28824:CDS 35.0%
AGGAATTGAACATGAGCATT+TGG - chr7.4:5703114-5703133 MS.gene28824:CDS 35.0%
AGGTTCGTTATCATTGATGA+TGG - chr7.4:5702896-5702915 MS.gene28824:intron 35.0%
ATGCTCATGTTCAATTCCTT+TGG + chr7.4:5703113-5703132 None:intergenic 35.0%
GAACTGAAAGAAACATTCTC+AGG + chr7.4:5702254-5702273 None:intergenic 35.0%
GAATTGAACATGAGCATTTG+GGG - chr7.4:5703116-5703135 MS.gene28824:CDS 35.0%
GATGCAAAGAATCTTGTTCT+TGG - chr7.4:5702959-5702978 MS.gene28824:CDS 35.0%
GATTTGAGGACTAAGTTCAA+AGG - chr7.4:5703325-5703344 MS.gene28824:intron 35.0%
GCAAAGATTAAGGTTAAAGG+TGG - chr7.4:5705261-5705280 MS.gene28824:CDS 35.0%
GCATGTAACTGAAGTTGAAT+GGG - chr7.4:5704984-5705003 MS.gene28824:CDS 35.0%
GCCTCTTTCATCAAATCATA+AGG + chr7.4:5702704-5702723 None:intergenic 35.0%
GCTGTGGTTAAAATTGTTGA+AGG - chr7.4:5703481-5703500 MS.gene28824:CDS 35.0%
GGAATTGAACATGAGCATTT+GGG - chr7.4:5703115-5703134 MS.gene28824:CDS 35.0%
GGATTAAAAGGAGGTGAATT+AGG + chr7.4:5703067-5703086 None:intergenic 35.0%
GGTGCAAAGATTAAGGTTAA+AGG - chr7.4:5705258-5705277 MS.gene28824:CDS 35.0%
GTCATGATTTATGCTGAAAG+TGG - chr7.4:5702617-5702636 MS.gene28824:CDS 35.0%
GTTTGGATGATGTTTATGTG+TGG - chr7.4:5703347-5703366 MS.gene28824:intron 35.0%
TAACCCTTCATAGTAAGCTT+TGG + chr7.4:5704033-5704052 None:intergenic 35.0%
TAGCACAAATATGGTCTGAT+TGG + chr7.4:5704423-5704442 None:intergenic 35.0%
TATTATCTTACACCGACACA+CGG - chr7.4:5704758-5704777 MS.gene28824:CDS 35.0%
TGAAAGTGGTGCAAAGATTA+AGG - chr7.4:5705251-5705270 MS.gene28824:CDS 35.0%
TGCATGTAACTGAAGTTGAA+TGG - chr7.4:5704983-5705002 MS.gene28824:CDS 35.0%
TGGTGGAACAATTCTTGATT+TGG - chr7.4:5705221-5705240 MS.gene28824:CDS 35.0%
TTGCCAAAGCTTACTATGAA+GGG - chr7.4:5704027-5704046 MS.gene28824:CDS 35.0%
TTGTATAGCTCAAATGTGGA+TGG + chr7.4:5705129-5705148 None:intergenic 35.0%
TTTGTTCCTGTCACAAAGTT+TGG - chr7.4:5705150-5705169 MS.gene28824:CDS 35.0%
! AAGACTTTGTGAGCATTTTC+AGG - chr7.4:5702426-5702445 MS.gene28824:CDS 35.0%
! AAGTTGTGATTTTTGTGTGC+AGG - chr7.4:5704265-5704284 MS.gene28824:CDS 35.0%
! AAGTTTGCAAGGGACAATTT+TGG + chr7.4:5703428-5703447 None:intergenic 35.0%
! AGTTGTGATTTTTGTGTGCA+GGG - chr7.4:5704266-5704285 MS.gene28824:CDS 35.0%
! GAAATTGATGATCTCTTTGG+TGG - chr7.4:5703217-5703236 MS.gene28824:CDS 35.0%
! GACTATTGTAGTGTTTGTTG+TGG - chr7.4:5703929-5703948 MS.gene28824:intron 35.0%
! TCATCAATGATAACGAACCT+TGG + chr7.4:5702896-5702915 None:intergenic 35.0%
!! AATCCTGTTGGTGTTTTTCA+TGG - chr7.4:5702839-5702858 MS.gene28824:intron 35.0%
!! AGAACTTTTTGAAGGAGTGA+AGG + chr7.4:5702317-5702336 None:intergenic 35.0%
!! CTCAGTTTTGATGAGATCAA+CGG + chr7.4:5702168-5702187 None:intergenic 35.0%
!! GAAGAAAGAAGCATCTGATT+TGG - chr7.4:5705011-5705030 MS.gene28824:CDS 35.0%
!! TCAATTGAATGGTTCTGAAG+TGG - chr7.4:5705326-5705345 MS.gene28824:CDS 35.0%
!! TCGTTATCATTGATGATGGA+TGG - chr7.4:5702900-5702919 MS.gene28824:intron 35.0%
!!! ATTTTGGGATTGTACCATCA+GGG + chr7.4:5704543-5704562 None:intergenic 35.0%
!!! GCATTTTCAGGTTCAAAACT+TGG - chr7.4:5702438-5702457 MS.gene28824:CDS 35.0%
!!! GTTCTTGCTTTTTCTCACAA+AGG - chr7.4:5702332-5702351 MS.gene28824:CDS 35.0%
!!! TTTTCAGGTTCAAAACTTGG+TGG - chr7.4:5702441-5702460 MS.gene28824:CDS 35.0%
!!! TTTTGGTTCCAAGATCCTAA+TGG - chr7.4:5704295-5704314 MS.gene28824:CDS 35.0%
AAACAGTATGGAGGAGTGAT+TGG - chr7.4:5704871-5704890 MS.gene28824:CDS 40.0%
AACAATGGAAGATCTTGCTG+TGG - chr7.4:5703465-5703484 MS.gene28824:CDS 40.0%
AAGAAACTTGTGTTCCCTGA+TGG - chr7.4:5704526-5704545 MS.gene28824:CDS 40.0%
AAGCTTGTGTTGCAAGGAAA+AGG - chr7.4:5703276-5703295 MS.gene28824:CDS 40.0%
ACATGCACAGTACCAACTAT+TGG + chr7.4:5704970-5704989 None:intergenic 40.0%
ACTCAATGGGTAGGTAAATC+TGG - chr7.4:5702467-5702486 MS.gene28824:CDS 40.0%
AGACAATCTCTAGTAGGAAG+AGG + chr7.4:5704577-5704596 None:intergenic 40.0%
AGACCATGAAAAACACCAAC+AGG + chr7.4:5702845-5702864 None:intergenic 40.0%
AGATCAACGGTTGTGGAATT+CGG + chr7.4:5702155-5702174 None:intergenic 40.0%
AGATCCTAATGGTGATCCAA+TGG - chr7.4:5704306-5704325 MS.gene28824:CDS 40.0%
ATGACATGATCATCAGAACC+TGG + chr7.4:5702602-5702621 None:intergenic 40.0%
ATGGTTTGAAGGCTTTCACA+AGG - chr7.4:5703302-5703321 MS.gene28824:intron 40.0%
CAATGTTCCTTGGATTGATG+AGG - chr7.4:5705383-5705402 MS.gene28824:CDS 40.0%
CACTCTTATCTTGCTGAATC+TGG - chr7.4:5703556-5703575 MS.gene28824:CDS 40.0%
CTTGCCAAAGCTTACTATGA+AGG - chr7.4:5704026-5704045 MS.gene28824:CDS 40.0%
GAATGCTACAAGCCAATAGT+TGG - chr7.4:5704955-5704974 MS.gene28824:CDS 40.0%
GACAAATGATTCGACCTGAT+TGG - chr7.4:5704389-5704408 MS.gene28824:CDS 40.0%
GAGGACTAAGTTCAAAGGTT+TGG - chr7.4:5703330-5703349 MS.gene28824:intron 40.0%
GATCCTAATGGTGATCCAAT+GGG - chr7.4:5704307-5704326 MS.gene28824:CDS 40.0%
GATCTTCCATTGTTCCATCA+AGG + chr7.4:5703459-5703478 None:intergenic 40.0%
GCAAAGAATCTTGTTCTTGG+TGG - chr7.4:5702962-5702981 MS.gene28824:CDS 40.0%
GCGATTCACTTGAATAAGCA+AGG + chr7.4:5705296-5705315 None:intergenic 40.0%
GGAACAAAGCAAGTTTCCAT+GGG - chr7.4:5704131-5704150 MS.gene28824:CDS 40.0%
GTATTAAGATGTGTGGTTCC+TGG + chr7.4:5703406-5703425 None:intergenic 40.0%
TATGTGTGGCATGCATTATG+TGG - chr7.4:5703361-5703380 MS.gene28824:intron 40.0%
TCAGGAACATCATGGAACAA+AGG + chr7.4:5702236-5702255 None:intergenic 40.0%
TCTATCAGATGGGGTTTCAT+TGG + chr7.4:5702375-5702394 None:intergenic 40.0%
TCTCACAAAGGTGGTTTCTT+TGG - chr7.4:5702344-5702363 MS.gene28824:CDS 40.0%
TGGAACAAAGCAAGTTTCCA+TGG - chr7.4:5704130-5704149 MS.gene28824:CDS 40.0%
TGGTTTGAAGGCTTTCACAA+GGG - chr7.4:5703303-5703322 MS.gene28824:intron 40.0%
TGTAACCAAAAAGCTCCCAT+TGG + chr7.4:5704325-5704344 None:intergenic 40.0%
TGTTGCAAGGAAAAGGAGTA+TGG - chr7.4:5703283-5703302 MS.gene28824:intron 40.0%
TTGGATCACCATTAGGATCT+TGG + chr7.4:5704306-5704325 None:intergenic 40.0%
TTTGATGAGATCAACGGTTG+TGG + chr7.4:5702162-5702181 None:intergenic 40.0%
! AAACTTGGTGGTCTACTCAA+TGG - chr7.4:5702453-5702472 MS.gene28824:CDS 40.0%
! AACTTGGTGGTCTACTCAAT+GGG - chr7.4:5702454-5702473 MS.gene28824:CDS 40.0%
! ACCCAAAAGAGCACAAGTTT+AGG - chr7.4:5704923-5704942 MS.gene28824:CDS 40.0%
! ATTGGTGCTTTCAACTGTCA+AGG - chr7.4:5704889-5704908 MS.gene28824:CDS 40.0%
! CAAAAGAGCACAAGTTTAGG+GGG - chr7.4:5704926-5704945 MS.gene28824:CDS 40.0%
! CCAAAAGAGCACAAGTTTAG+GGG - chr7.4:5704925-5704944 MS.gene28824:CDS 40.0%
! CCCAAAAGAGCACAAGTTTA+GGG - chr7.4:5704924-5704943 MS.gene28824:CDS 40.0%
! CCCTAAACTTGTGCTCTTTT+GGG + chr7.4:5704927-5704946 None:intergenic 40.0%
! CTTCATAGTAAGCTTTGGCA+AGG + chr7.4:5704028-5704047 None:intergenic 40.0%
! GGAAAAGGAGTATGGTTTGA+AGG - chr7.4:5703291-5703310 MS.gene28824:intron 40.0%
! GGGTTCATCTCAACACTTTT+AGG - chr7.4:5702738-5702757 MS.gene28824:intron 40.0%
! GTTGTGATTTTTGTGTGCAG+GGG - chr7.4:5704267-5704286 MS.gene28824:CDS 40.0%
! TAGGCCCTAGTATTGAAGTT+TGG + chr7.4:5704684-5704703 None:intergenic 40.0%
! TGGAAACTTGCTTTGTTCCA+AGG + chr7.4:5704130-5704149 None:intergenic 40.0%
! TGGATGGCAAAGCATTAGTT+TGG - chr7.4:5702916-5702935 MS.gene28824:intron 40.0%
! TGGCAAAGCATTAGTTTGGA+TGG - chr7.4:5702920-5702939 MS.gene28824:intron 40.0%
! TTCAGCAAGATAAGAGTGCA+TGG + chr7.4:5703554-5703573 None:intergenic 40.0%
! TTGGTGCTTTCAACTGTCAA+GGG - chr7.4:5704890-5704909 MS.gene28824:CDS 40.0%
!! ACTATTGGCTTGTAGCATTC+AGG + chr7.4:5704955-5704974 None:intergenic 40.0%
!! ACTTTTTGAAGGAGTGAAGG+TGG + chr7.4:5702314-5702333 None:intergenic 40.0%
!! AGAAGCATCTGATTTGGGTA+AGG - chr7.4:5705017-5705036 MS.gene28824:CDS 40.0%
!! CTATTGGCTTGTAGCATTCA+GGG + chr7.4:5704954-5704973 None:intergenic 40.0%
!! CTTTTTGAAGGAGTGAAGGT+GGG + chr7.4:5702313-5702332 None:intergenic 40.0%
!! GGTCTTGAGGGTTTTTCAAA+AGG - chr7.4:5702860-5702879 MS.gene28824:intron 40.0%
!! GGTGTTTTTCATGGTCTTGA+GGG - chr7.4:5702848-5702867 MS.gene28824:intron 40.0%
!! TGGTGTTTTTCATGGTCTTG+AGG - chr7.4:5702847-5702866 MS.gene28824:intron 40.0%
!! TTTTTGAAGGAGTGAAGGTG+GGG + chr7.4:5702312-5702331 None:intergenic 40.0%
!!! ATGGGAGCTTTTTGGTTACA+AGG - chr7.4:5704325-5704344 MS.gene28824:CDS 40.0%
!!! CATTTTGGGATTGTACCATC+AGG + chr7.4:5704544-5704563 None:intergenic 40.0%
!!! CTTGCTTTTTCTCACAAAGG+TGG - chr7.4:5702335-5702354 MS.gene28824:CDS 40.0%
!!! TTTAGGTCTGCACTTTTTCC+AGG - chr7.4:5702581-5702600 MS.gene28824:CDS 40.0%
AAATGACTGGAAGGCTTCGT+AGG - chr7.4:5702990-5703009 MS.gene28824:CDS 45.0%
AGGCTTTCACAAGGGATTTG+AGG - chr7.4:5703311-5703330 MS.gene28824:intron 45.0%
ATGTGGAAGCTTGTGTTGCA+AGG - chr7.4:5703270-5703289 MS.gene28824:CDS 45.0%
CAAGTTTCCATGGGAAGAGT+TGG - chr7.4:5704140-5704159 MS.gene28824:CDS 45.0%
CATGCATTATGTGGTGCTTG+GGG - chr7.4:5703370-5703389 MS.gene28824:intron 45.0%
GATTGGAACATGTCCCAATC+AGG + chr7.4:5704406-5704425 None:intergenic 45.0%
GCATGCATTATGTGGTGCTT+GGG - chr7.4:5703369-5703388 MS.gene28824:intron 45.0%
GTGGTGAACAAATGACTGGA+AGG - chr7.4:5702981-5703000 MS.gene28824:CDS 45.0%
GTTCCTGTCACAAAGTTTGG+TGG - chr7.4:5705153-5705172 MS.gene28824:CDS 45.0%
TGCTGAAAGTGGCTCAACAA+AGG - chr7.4:5702628-5702647 MS.gene28824:CDS 45.0%
TGGTGCTTTCAACTGTCAAG+GGG - chr7.4:5704891-5704910 MS.gene28824:CDS 45.0%
TTAAACGTGACTCCGTGTGT+CGG + chr7.4:5704773-5704792 None:intergenic 45.0%
TTGCCACCAAACTTTGTGAC+AGG + chr7.4:5705159-5705178 None:intergenic 45.0%
TTGCTTACCAACTCTTCCCA+TGG + chr7.4:5704150-5704169 None:intergenic 45.0%
! CCCCTAAACTTGTGCTCTTT+TGG + chr7.4:5704928-5704947 None:intergenic 45.0%
! GAGGGAAAGTTTAAGGTGAG+AGG - chr7.4:5702206-5702225 MS.gene28824:CDS 45.0%
! GTGATCCAATGGGAGCTTTT+TGG - chr7.4:5704317-5704336 MS.gene28824:CDS 45.0%
!! AAACTTTCACCTGGCCTTGA+TGG - chr7.4:5703442-5703461 MS.gene28824:CDS 45.0%
!! CTTGGTGGTGAACAAATGAC+TGG - chr7.4:5702977-5702996 MS.gene28824:CDS 45.0%
!! ATATGTAAATAAAATAAAAA+TGG - chr7.4:5704234-5704253 MS.gene28824:CDS 5.0%
AGGCCAGGTGAAAGTTTGCA+AGG + chr7.4:5703439-5703458 None:intergenic 50.0%
CTTTCAACTGTCAAGGGGCA+GGG - chr7.4:5704896-5704915 MS.gene28824:CDS 50.0%
GCTCCCATTGGATCACCATT+AGG + chr7.4:5704313-5704332 None:intergenic 50.0%
GGCATGCATTATGTGGTGCT+TGG - chr7.4:5703368-5703387 MS.gene28824:intron 50.0%
GGCCAGGTGAAAGTTTGCAA+GGG + chr7.4:5703438-5703457 None:intergenic 50.0%
GGCTCAAGAGCTATTTGTGG+TGG - chr7.4:5704454-5704473 MS.gene28824:CDS 50.0%
GTCCCTTGCAAACTTTCACC+TGG - chr7.4:5703433-5703452 MS.gene28824:CDS 50.0%
GTTCCTTGGATTGATGAGGC+TGG - chr7.4:5705387-5705406 MS.gene28824:CDS 50.0%
TCAACGGTTGTGGAATTCGG+TGG + chr7.4:5702152-5702171 None:intergenic 50.0%
TCCATTGTTCCATCAAGGCC+AGG + chr7.4:5703454-5703473 None:intergenic 50.0%
TGGTGGTCTACTCAATGGGT+AGG - chr7.4:5702458-5702477 MS.gene28824:CDS 50.0%
TTGCTGAATCTGGCGTCACA+GGG - chr7.4:5703566-5703585 MS.gene28824:CDS 50.0%
! AGGTGGGGCATTTGAATCAG+AGG + chr7.4:5702297-5702316 None:intergenic 50.0%
! CAAAAGGCAGCGTTGAACCA+AGG - chr7.4:5702876-5702895 MS.gene28824:intron 50.0%
! GCTGGCTCAAGAGCTATTTG+TGG - chr7.4:5704451-5704470 MS.gene28824:CDS 50.0%
! GGCTGGTGGTGTTTCTGATT+TGG - chr7.4:5705404-5705423 MS.gene28824:CDS 50.0%
! GGGTAAGGCAGAAGAGTATG+TGG - chr7.4:5705032-5705051 MS.gene28824:CDS 50.0%
! GGTGGGGCATTTGAATCAGA+GGG + chr7.4:5702296-5702315 None:intergenic 50.0%
!! ACCTGGCCTTGATGGAACAA+TGG - chr7.4:5703450-5703469 MS.gene28824:CDS 50.0%
!! GGATGGTGCTGATCATAACG+AGG - chr7.4:5702937-5702956 MS.gene28824:CDS 50.0%
!! GTTCTGAAGTGGCGTTTGAG+TGG - chr7.4:5705337-5705356 MS.gene28824:CDS 50.0%
ACTGGAAGGCTTCGTAGGCT+TGG - chr7.4:5702995-5703014 MS.gene28824:CDS 55.0%
CCACCAGCCTCATCAATCCA+AGG + chr7.4:5705393-5705412 None:intergenic 55.0%
CCTTGGATTGATGAGGCTGG+TGG - chr7.4:5705390-5705409 MS.gene28824:CDS 55.0%
CTTGCTGAATCTGGCGTCAC+AGG - chr7.4:5703565-5703584 MS.gene28824:CDS 55.0%
GAAGTGGCGTTTGAGTGGCT+GGG - chr7.4:5705342-5705361 MS.gene28824:CDS 55.0%
GCATTATGTGGTGCTTGGGG+TGG - chr7.4:5703373-5703392 MS.gene28824:intron 55.0%
GCTTTCAACTGTCAAGGGGC+AGG - chr7.4:5704895-5704914 MS.gene28824:CDS 55.0%
TGAAGTGGCGTTTGAGTGGC+TGG - chr7.4:5705341-5705360 MS.gene28824:CDS 55.0%
TGCTGAATCTGGCGTCACAG+GGG - chr7.4:5703567-5703586 MS.gene28824:CDS 55.0%
! TGTGTGCAGGGGACGACTTT+TGG - chr7.4:5704278-5704297 MS.gene28824:CDS 55.0%
!! AGGCTTCGTAGGCTTGGTGA+AGG - chr7.4:5703001-5703020 MS.gene28824:CDS 55.0%
CAACTGTCAAGGGGCAGGGT+GGG - chr7.4:5704900-5704919 MS.gene28824:CDS 60.0%
GCGTTTGAGTGGCTGGGTGA+TGG - chr7.4:5705348-5705367 MS.gene28824:CDS 60.0%
TCAACTGTCAAGGGGCAGGG+TGG - chr7.4:5704899-5704918 MS.gene28824:CDS 60.0%
GTGGTGCTTGGGGTGGTGTG+AGG - chr7.4:5703380-5703399 MS.gene28824:intron 65.0%
GCTTGGGGTGGTGTGAGGCC+AGG - chr7.4:5703385-5703404 MS.gene28824:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 5702143 5705440 5702143 ID=MS.gene28824
chr7.4 mRNA 5702143 5705440 5702143 ID=MS.gene28824.t1;Parent=MS.gene28824
chr7.4 exon 5703974 5705440 5703974 ID=MS.gene28824.t1.exon1;Parent=MS.gene28824.t1
chr7.4 CDS 5703974 5705440 5703974 ID=cds.MS.gene28824.t1;Parent=MS.gene28824.t1
chr7.4 exon 5703422 5703599 5703422 ID=MS.gene28824.t1.exon2;Parent=MS.gene28824.t1
chr7.4 CDS 5703422 5703599 5703422 ID=cds.MS.gene28824.t1;Parent=MS.gene28824.t1
chr7.4 exon 5702929 5703296 5702929 ID=MS.gene28824.t1.exon3;Parent=MS.gene28824.t1
chr7.4 CDS 5702929 5703296 5702929 ID=cds.MS.gene28824.t1;Parent=MS.gene28824.t1
chr7.4 exon 5702143 5702706 5702143 ID=MS.gene28824.t1.exon4;Parent=MS.gene28824.t1
chr7.4 CDS 5702143 5702706 5702143 ID=cds.MS.gene28824.t1;Parent=MS.gene28824.t1
Gene Sequence

>MS.gene28824

ATGGCTCCACCGAATTCCACAACCGTTGATCTCATCAAAACTGAGTCATTATTTGATTTATCTGAGGGAAAGTTTAAGGTGAGAGGTGTTCCTTTGTTCCATGATGTTCCTGAGAATGTTTCTTTCAGTTCATTCTCTTCTATATGCAAACCCTCTGATTCAAATGCCCCACCTTCACTCCTTCAAAAAGTTCTTGCTTTTTCTCACAAAGGTGGTTTCTTTGGATTCTCCAATGAAACCCCATCTGATAGATTGATGAATTCATTGGGTAGTTTCAATGGAAAAGACTTTGTGAGCATTTTCAGGTTCAAAACTTGGTGGTCTACTCAATGGGTAGGTAAATCTGGTTCTGATTTACAAATGGAAACTCAATGGATTCTTTTTGATATTCCTGAAATCAAATCTTATGCTGTGATCATTCCTATAATTGAAAAAGGTTTTAGGTCTGCACTTTTTCCAGGTTCTGATGATCATGTCATGATTTATGCTGAAAGTGGCTCAACAAAGGTGAAAGAATCATGTTTCAATGCTATTGCTTATGTTCATTTTTCTGAAAATCCTTATGATTTGATGAAAGAGGCTTATAGTGTTATAAGGGTTCATCTCAACACTTTTAGGTTATTGGAAGAGAAAACACTACCAAATTTAGTTGATAAATTTGGTTGGTGTACTTGGGATGCTTTCTATTTAACTGTTAATCCTGTTGGTGTTTTTCATGGTCTTGAGGGTTTTTCAAAAGGCAGCGTTGAACCAAGGTTCGTTATCATTGATGATGGATGGCAAAGCATTAGTTTGGATGGTGCTGATCATAACGAGGATGCAAAGAATCTTGTTCTTGGTGGTGAACAAATGACTGGAAGGCTTCGTAGGCTTGGTGAAGGAGACAAGTTCAAAAAATATGAAAGTGGATTGTTATTAGGTCCTAATTCACCTCCTTTTAATCCAAAAACGATTAAGGAGTTGATTTCCAAAGGAATTGAACATGAGCATTTGGGGAAGCAAAGAGATCAAGCAATTTTATCTAAGAGTTCTGATTTGGCTGAGATTGAGTCAAAGATCAAGAAACTGATAAAAGAAATTGATGATCTCTTTGGTGGAGAACAAAGTAGTAGTGTTCAAAAAAGTGAATGTGGAAGCTTGTGTTGCAAGGAAAAGGAGTATGGTTTGAAGGCTTTCACAAGGGATTTGAGGACTAAGTTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCATTATGTGGTGCTTGGGGTGGTGTGAGGCCAGGAACCACACATCTTAATACCAAAATTGTCCCTTGCAAACTTTCACCTGGCCTTGATGGAACAATGGAAGATCTTGCTGTGGTTAAAATTGTTGAAGGTTCAATTGGACTAGTTGATCCTGATCAAGCCAATGATTTTTATGATTCCATGCACTCTTATCTTGCTGAATCTGGCGTCACAGGGGTCAAAGTTGATGTCATTCATGTGAGTTTTCTAATTTCAATTTTCTTTTCATAGCTATTAGAAATAATATAGTTTATTAGTGTGTTAGTTTTTTGCAATGAGATACCAAATTAACTAATAGTTAGTTAAATATATATAATAGTCAGCAGTAGTTAGTCTGTTGAAATATAATAGTTAGCGGCAGTTAGTTTTTTTTCCTTATAAACTTTTTTGTACATATATTTATATAGTTAAATTTATAACATGCATATATATATGTTTATTTATTCATGAACATGCCTTTTTTAAATCAAATACATTGCAATTTTTTCTGTTATTGACTAATGACTATATATGATATGACTATTGTAGTGTTTGTTGTGGCCAAATAATAATCGCTTTTTTTATTTATGCAGTGTCTTGAATATGTGTGTGATAAATATGGAGGCAGAGTTGACCTTGCCAAAGCTTACTATGAAGGGTTAACAAAATCCATTGCCAAGAATTTTAATGGAAATGGAATCATTGCTAGCATGCAACAGTGCAATGATTTTTTCTTCCTTGGAACAAAGCAAGTTTCCATGGGAAGAGTTGGTAAGCAATAATTAAGCAATATACAAGCACATGATCAATGAATTTTGTTGTTATTTATTCATACGTACATACATATGTAAATAAAATAAAAATGGTGTTAAAAAAGTTGTGATTTTTGTGTGCAGGGGACGACTTTTGGTTCCAAGATCCTAATGGTGATCCAATGGGAGCTTTTTGGTTACAAGGTGTGCACATGATTCATTGTTCCTATAATAGTTTATGGATGGGACAAATGATTCGACCTGATTGGGACATGTTCCAATCAGACCATATTTGTGCTAAATTTCATGCTGGCTCAAGAGCTATTTGTGGTGGTCCAATTTATTTGAGTGATAATGTTGGCTCTCATGACTTTGATCTGATTAAGAAACTTGTGTTCCCTGATGGTACAATCCCAAAATGCATACATTTTCCTCTTCCTACTAGAGATTGTCTTTTCAAAAACCCTCTATTTGACAAAACAACTGTTCTCAAAATTTGGAACTTCAACAAGGTATTCTCTCTCACACATTTTTTATGCCAAACTTCAATACTAGGGCCTAATAAAATACTTTGCATATTTATTATTGATGGTGTGTCTGTAGTTCAATACATATTATTATCTTACACCGACACACGGAGTCACGTTTAATTATCTTTATTACTTACATTATTTTTTTAAGGAGCATTCCTATAAGCTATTATGTAATAACAATTTTTTTCATATATAAAACAGTATGGAGGAGTGATTGGTGCTTTCAACTGTCAAGGGGCAGGGTGGGACCCAAAAGAGCACAAGTTTAGGGGGTTCCCTGAATGCTACAAGCCAATAGTTGGTACTGTGCATGTAACTGAAGTTGAATGGGATCAGAAGAAAGAAGCATCTGATTTGGGTAAGGCAGAAGAGTATGTGGTCTACTTCAATCAAGCTGAAGAACTTTCTTTAATGACTCCAAAATCTGAACCAATTCAATTTATCATTCAACCATCCACATTTGAGCTATACAATTTTGTTCCTGTCACAAAGTTTGGTGGCAACATCAAATTTGCAGCAATTGGGTTGACAAACATGTTCAATAGTGGTGGAACAATTCTTGATTTGGAATATGTTGAAAGTGGTGCAAAGATTAAGGTTAAAGGTGGTGGGAATTTCCTTGCTTATTCAAGTGAATCGCCAAAGAAGTTTCAATTGAATGGTTCTGAAGTGGCGTTTGAGTGGCTGGGTGATGGAAAAATGACTTTCAATGTTCCTTGGATTGATGAGGCTGGTGGTGTTTCTGATTTGGCAATTTTTTTCTAG

Protein sequence

>MS.gene28824.t1

MAPPNSTTVDLIKTESLFDLSEGKFKVRGVPLFHDVPENVSFSSFSSICKPSDSNAPPSLLQKVLAFSHKGGFFGFSNETPSDRLMNSLGSFNGKDFVSIFRFKTWWSTQWVGKSGSDLQMETQWILFDIPEIKSYAVIIPIIEKGFRSALFPGSDDHVMIYAESGSTKVKESCFNAIAYVHFSENPYDLMKEAYSVIRVHLNTFRLLEEKTLPNLVDKFGWCTWDAFYLTVNPVGVFHGLEGFSKGSVEPRFVIIDDGWQSISLDGADHNEDAKNLVLGGEQMTGRLRRLGEGDKFKKYESGLLLGPNSPPFNPKTIKELISKGIEHEHLGKQRDQAILSKSSDLAEIESKIKKLIKEIDDLFGGEQSSSVQKSECGSLCCKEKEYGLKAFTRDLRTKFKGLDDVYVWHALCGAWGGVRPGTTHLNTKIVPCKLSPGLDGTMEDLAVVKIVEGSIGLVDPDQANDFYDSMHSYLAESGVTGVKVDVIHCLEYVCDKYGGRVDLAKAYYEGLTKSIAKNFNGNGIIASMQQCNDFFFLGTKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIHCSYNSLWMGQMIRPDWDMFQSDHICAKFHAGSRAICGGPIYLSDNVGSHDFDLIKKLVFPDGTIPKCIHFPLPTRDCLFKNPLFDKTTVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKFRGFPECYKPIVGTVHVTEVEWDQKKEASDLGKAEEYVVYFNQAEELSLMTPKSEPIQFIIQPSTFELYNFVPVTKFGGNIKFAAIGLTNMFNSGGTILDLEYVESGAKIKVKGGGNFLAYSSESPKKFQLNGSEVAFEWLGDGKMTFNVPWIDEAGGVSDLAIFF