AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050414


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050414.t1 MTR_7g106910 93.015 859 59 1 1 858 1 859 0.0 1654
MS.gene050414.t1 MTR_8g088020 87.179 858 91 3 1 858 1 839 0.0 1555
MS.gene050414.t1 MTR_1g097450 84.455 862 122 2 1 858 1 854 0.0 1511
MS.gene050414.t1 MTR_3g077280 42.209 860 394 13 1 844 1 773 0.0 671
MS.gene050414.t1 MTR_7g109790 91.808 354 22 1 502 855 9 355 0.0 671
MS.gene050414.t1 MTR_6g004880 52.017 471 216 6 382 844 306 774 1.07e-165 501
MS.gene050414.t1 MTR_6g004880 40.299 335 155 6 1 307 1 318 1.41e-65 234
MS.gene050414.t1 MTR_4g105250 51.168 471 219 7 383 844 297 765 6.05e-163 494
MS.gene050414.t1 MTR_4g105250 43.711 318 158 7 1 307 1 308 6.05e-69 244
MS.gene050414.t1 MTR_4g115330 37.292 480 282 7 367 838 180 648 5.63e-96 315
MS.gene050414.t1 MTR_4g115330 38.785 214 110 4 98 302 1 202 1.88e-38 153
MS.gene050414.t1 MTR_4g115330 37.292 480 282 7 367 838 305 773 3.79e-95 316
MS.gene050414.t1 MTR_4g115330 38.095 210 109 4 102 302 130 327 1.23e-35 145
MS.gene050414.t1 MTR_5g096820 39.498 438 246 7 388 819 296 720 5.90e-95 315
MS.gene050414.t1 MTR_5g096820 33.603 247 140 3 71 299 42 282 1.87e-38 154
MS.gene050414.t1 MTR_7g091880 36.978 503 276 8 363 839 263 750 3.54e-93 310
MS.gene050414.t1 MTR_7g091880 32.226 301 174 4 18 310 7 285 6.37e-41 162
MS.gene050414.t1 MTR_3g075510 38.149 443 253 7 406 840 306 735 4.39e-92 307
MS.gene050414.t1 MTR_3g075510 32.192 292 150 4 27 298 16 279 1.23e-39 157
MS.gene050414.t1 MTR_1g052515 39.101 445 252 7 406 843 293 725 1.06e-90 303
MS.gene050414.t1 MTR_1g052515 36.910 233 139 2 71 299 42 270 2.87e-41 162
MS.gene050414.t1 MTR_5g096820 44.371 302 155 4 388 686 296 587 8.71e-79 268
MS.gene050414.t1 MTR_5g096820 33.603 247 140 3 71 299 42 282 9.54e-39 154
MS.gene050414.t1 MTR_3g075510 42.628 312 166 4 406 714 306 607 2.79e-75 258
MS.gene050414.t1 MTR_3g075510 32.192 292 150 4 27 298 16 279 7.19e-40 157
MS.gene050414.t1 MTR_5g065520 57.576 66 28 0 621 686 219 284 5.46e-20 94.0
MS.gene050414.t1 MTR_3g089400 82.051 39 7 0 593 631 354 392 5.97e-14 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050414.t1 AT4G01970 57.629 852 341 12 18 858 34 876 0.0 1013
MS.gene050414.t1 AT4G01970 57.629 852 341 12 18 858 81 923 0.0 1013
MS.gene050414.t1 AT5G40390 52.484 463 216 4 384 844 310 770 1.85e-172 518
MS.gene050414.t1 AT5G40390 43.098 297 145 4 18 302 22 306 3.71e-65 233
MS.gene050414.t1 AT3G57520 34.496 516 290 10 363 847 264 762 5.67e-93 310
MS.gene050414.t1 AT3G57520 36.667 240 135 3 71 299 42 275 1.18e-41 164
MS.gene050414.t1 AT5G20250 38.479 447 261 6 388 832 287 721 1.67e-92 308
MS.gene050414.t1 AT5G20250 34.576 295 155 4 20 299 9 280 4.01e-43 168
MS.gene050414.t1 AT5G20250 38.479 447 261 6 388 832 287 721 1.67e-92 308
MS.gene050414.t1 AT5G20250 34.576 295 155 4 20 299 9 280 4.01e-43 168
MS.gene050414.t1 AT5G20250 38.479 447 261 6 388 832 287 721 1.67e-92 308
MS.gene050414.t1 AT5G20250 34.576 295 155 4 20 299 9 280 4.01e-43 168
MS.gene050414.t1 AT5G20250 38.479 447 261 6 388 832 382 816 6.20e-92 309
MS.gene050414.t1 AT5G20250 34.576 295 155 4 20 299 104 375 9.09e-43 168
MS.gene050414.t1 AT1G55740 38.938 452 253 8 403 843 303 742 6.47e-90 301
MS.gene050414.t1 AT1G55740 32.857 280 157 5 29 299 18 275 4.06e-39 156
MS.gene050414.t1 AT3G57520 35.381 407 243 7 363 766 264 653 4.29e-78 266
MS.gene050414.t1 AT3G57520 36.667 240 135 3 71 299 42 275 4.75e-42 164
MS.gene050414.t1 AT3G57520 38.333 300 168 5 363 659 264 549 6.54e-61 217
MS.gene050414.t1 AT3G57520 36.667 240 135 3 71 299 42 275 1.34e-42 164

Find 195 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCTAAACTTGTGCTCTTT+TGG 0.125940 7.3:+4564564 None:intergenic
AAACAACTGTTCTCAAAATT+TGG 0.128848 7.3:-4564944 MS.gene050414:CDS
AATTGAATTGGTTCAGATTT+TGG 0.163451 7.3:+4564396 None:intergenic
CCAAATTTAGTTGATAAATT+TGG 0.169026 7.3:-4566770 MS.gene050414:CDS
AGAGGAAAATGTATGCATTT+TGG 0.172365 7.3:+4565008 None:intergenic
CCAAATTTATCAACTAAATT+TGG 0.182749 7.3:+4566770 None:intergenic
TCCATTTCCATTAAAATTCT+TGG 0.200527 7.3:+4565484 None:intergenic
TTTATCTGAGGGAAAGTTTA+AGG 0.203268 7.3:-4567353 MS.gene050414:CDS
ATCATTCCTATAATTGAAAA+AGG 0.215479 7.3:-4566995 MS.gene050414:CDS
ACTATTGGCTTGTAGCATTC+AGG 0.242224 7.3:+4564537 None:intergenic
TCTCACAAAGGTGGTTTCTT+TGG 0.256159 7.3:-4567208 MS.gene050414:CDS
TATGAAAGTGGATTGTTATT+AGG 0.257420 7.3:-4566512 MS.gene050414:CDS
CCATTCAATTGAAACTTCTT+TGG 0.259667 7.3:+4564174 None:intergenic
AAGAGGCTTATAGTGTTATA+AGG 0.261390 7.3:-4566835 MS.gene050414:CDS
ACATTATCACTCAAATAAAT+TGG 0.261796 7.3:+4565086 None:intergenic
GGATTAAAAGGAGGTGAATT+AGG 0.268125 7.3:+4566488 None:intergenic
ACAGCATAGGATTTGATTTC+AGG 0.273633 7.3:+4567019 None:intergenic
TGAAAGTGGTGCAAAGATTA+AGG 0.276825 7.3:-4564238 MS.gene050414:CDS
GGAATTGAACATGAGCATTT+GGG 0.290038 7.3:-4566437 MS.gene050414:CDS
AACATCAAATTTGCACCAAT+TGG 0.297810 7.3:-4564312 MS.gene050414:CDS
TTTATCTAAGAGTTCTGATT+TGG 0.304861 7.3:-4566393 MS.gene050414:CDS
TGAAGTGGCGTTTGAGTGGC+TGG 0.307659 7.3:-4564148 MS.gene050414:CDS
GGCTGCTGGTGTTTCTGATT+TGG 0.316228 7.3:-4564085 MS.gene050414:CDS
ATGCTCATGTTCAATTCCTT+TGG 0.319521 7.3:+4566442 None:intergenic
GAAGAAAGAAGCATCTGATT+TGG 0.320028 7.3:-4564478 MS.gene050414:CDS
CACTCTTATCTTGCTGAATC+TGG 0.323017 7.3:-4565996 MS.gene050414:CDS
ATTGTTCCTATAATAGCTTA+TGG 0.323339 7.3:-4565202 MS.gene050414:CDS
TCCCATCCATAAGCTATTAT+AGG 0.323482 7.3:+4565196 None:intergenic
AGGAATTGAACATGAGCATT+TGG 0.323538 7.3:-4566438 MS.gene050414:CDS
CCAAAGAAGTTTCAATTGAA+TGG 0.327615 7.3:-4564174 MS.gene050414:CDS
AAAGAAATTGATGATCTCTT+TGG 0.331904 7.3:-4566338 MS.gene050414:CDS
TGGTGGAACAATTCTTGATT+TGG 0.333054 7.3:-4564268 MS.gene050414:CDS
TTTGTTCCAGTCACAAAGTT+TGG 0.335025 7.3:-4564339 MS.gene050414:CDS
GGTGCAAAGATTAAGGTTAA+AGG 0.343844 7.3:-4564231 MS.gene050414:CDS
AAACTTTCACCTGGCCTTGA+TGG 0.345335 7.3:-4566110 MS.gene050414:CDS
CCCAAAAGAGCACAAGTTTA+GGG 0.345555 7.3:-4564565 MS.gene050414:CDS
ACCCAAAAGAGCACAAGTTT+AGG 0.346754 7.3:-4564566 MS.gene050414:CDS
TGTGTGCAGGGGACGACTTT+TGG 0.348233 7.3:-4565286 MS.gene050414:intron
GTATTAAGATGTGTGGTTCC+TGG 0.349633 7.3:+4566149 None:intergenic
TGATAGATTGATGAATTCAT+TGG 0.350934 7.3:-4567164 MS.gene050414:CDS
AAGTTTGCAAGGGACAATTT+TGG 0.353779 7.3:+4566127 None:intergenic
AATTCATTGGGTAGTTTCAA+TGG 0.355636 7.3:-4567151 MS.gene050414:CDS
TGTTGCAAGGAAAAGGAGTA+TGG 0.358061 7.3:-4566269 MS.gene050414:CDS
ACTCAATGGGTTGGTAAATC+TGG 0.360875 7.3:-4567085 MS.gene050414:CDS
TTGGATCACCATTAGGATCT+TGG 0.360993 7.3:+4565261 None:intergenic
TCTATCAGATGGGGTTTCAT+TGG 0.361535 7.3:+4567180 None:intergenic
AATTGACTCTCAATGTTCCT+TGG 0.365903 7.3:-4564116 MS.gene050414:CDS
AAAATTGTTGAAGGTTCAAT+TGG 0.374085 7.3:-4566062 MS.gene050414:CDS
GCATGCATTATGTGGTGCTT+GGG 0.377719 7.3:-4566183 MS.gene050414:CDS
GCTTGGGGTGGTGTGAGGCC+AGG 0.381667 7.3:-4566167 MS.gene050414:CDS
GATGCAAAGAATCTTGTTCT+TGG 0.383283 7.3:-4566593 MS.gene050414:CDS
GAATATGTGTGTGATAAATA+TGG 0.383570 7.3:-4565560 MS.gene050414:CDS
CTTGCTGAATCTGGCGTCAC+AGG 0.389510 7.3:-4565987 MS.gene050414:CDS
ATAAATTTGGTTGGTGTACT+TGG 0.391671 7.3:-4566757 MS.gene050414:CDS
AAGAAAGAAGCATCTGATTT+GGG 0.399298 7.3:-4564477 MS.gene050414:CDS
GAGGACTAAGTTCAAAGGTT+TGG 0.399831 7.3:-4566222 MS.gene050414:CDS
CATGAAATTTAGCACAAATA+TGG 0.402279 7.3:+4565135 None:intergenic
GCTTTCAACTGTCAAGGGGC+AGG 0.405154 7.3:-4564594 MS.gene050414:CDS
AGATCAACGGTTGTGGAATT+CGG 0.405372 7.3:+4567400 None:intergenic
GCCTCTTTCATCAAATCATA+AGG 0.410886 7.3:+4566851 None:intergenic
ATCTGGTTCTGATTTACAAA+TGG 0.419921 7.3:-4567068 MS.gene050414:CDS
GGCATGCATTATGTGGTGCT+TGG 0.419974 7.3:-4566184 MS.gene050414:CDS
TCCATTAAAATTCTTGGCAA+TGG 0.426719 7.3:+4565490 None:intergenic
TATTTAACTGTTAATCCTGT+TGG 0.427385 7.3:-4566725 MS.gene050414:CDS
TCCTTATGATTTGATGAAAG+AGG 0.429052 7.3:-4566852 MS.gene050414:CDS
TAACCCTTCATAGTAAGCTT+TGG 0.430154 7.3:+4565520 None:intergenic
GGTTGAATGATAAATTGAAT+TGG 0.432932 7.3:+4564384 None:intergenic
GACAGATGATTCGACCTGAT+TGG 0.433474 7.3:-4565175 MS.gene050414:CDS
GACTGAAACATGTCCCAATC+AGG 0.434533 7.3:+4565161 None:intergenic
TGGATGGCAAAGCATTAGTT+TGG 0.435861 7.3:-4566636 MS.gene050414:CDS
ACATGCACAGTACCAACTAT+TGG 0.438454 7.3:+4564522 None:intergenic
AGGCTTTCACAAGGGATTTG+AGG 0.440238 7.3:-4566241 MS.gene050414:CDS
CTATTGGCTTGTAGCATTCA+GGG 0.449437 7.3:+4564538 None:intergenic
CCTTGGATTGATGAGGCTGC+TGG 0.450440 7.3:-4564099 MS.gene050414:CDS
GCTCCCATTGGATCACCATT+AGG 0.450911 7.3:+4565254 None:intergenic
AGAGGCTTATAGTGTTATAA+GGG 0.452259 7.3:-4566834 MS.gene050414:CDS
TTGCTGAATCTGGCGTCACA+GGG 0.453056 7.3:-4565986 MS.gene050414:CDS
TTGAAAAGACAATCTCTAGT+AGG 0.453990 7.3:+4564984 None:intergenic
ATTTACAAATGGAAACTCAA+TGG 0.457763 7.3:-4567057 MS.gene050414:CDS
AGGTTCGTTATCATTGATGA+TGG 0.458921 7.3:-4566656 MS.gene050414:CDS
ACATCAAATTTGCACCAATT+GGG 0.460655 7.3:-4564311 MS.gene050414:CDS
CTTTCAACTGTCAAGGGGCA+GGG 0.461758 7.3:-4564593 MS.gene050414:CDS
GAAATTGATGATCTCTTTGG+TGG 0.465614 7.3:-4566335 MS.gene050414:CDS
CTTGCCAAAGCTTACTATGA+AGG 0.466120 7.3:-4565524 MS.gene050414:CDS
TTCCTATAATAGCTTATGGA+TGG 0.466764 7.3:-4565198 MS.gene050414:CDS
AAGATTAAGGTTAAAGGTGG+TGG 0.466834 7.3:-4564225 MS.gene050414:CDS
AAACAGTATGGAGGAGTGAT+TGG 0.468721 7.3:-4564618 MS.gene050414:intron
AAACATGGTGGTCTACTCAA+TGG 0.471026 7.3:-4567099 MS.gene050414:CDS
GCTGTGGTTAAAATTGTTGA+AGG 0.473872 7.3:-4566071 MS.gene050414:CDS
TTTGATGAGATCAACGGTTG+TGG 0.474107 7.3:+4567393 None:intergenic
GGAAAAGGAGTATGGTTTGA+AGG 0.477848 7.3:-4566261 MS.gene050414:CDS
GTCCCTTGCAAACTTTCACC+TGG 0.492351 7.3:-4566119 MS.gene050414:CDS
ACAGATGATTCGACCTGATT+GGG 0.492428 7.3:-4565174 MS.gene050414:CDS
GATAGATTGATGAATTCATT+GGG 0.493686 7.3:-4567163 MS.gene050414:CDS
TGGAACAAAGCAAGTTTCCA+TGG 0.495682 7.3:-4565420 MS.gene050414:CDS
TATGTGTGGCATGCATTATG+TGG 0.498900 7.3:-4566191 MS.gene050414:CDS
ACTGGAAGGCTTCGTAGGCT+TGG 0.499891 7.3:-4566557 MS.gene050414:CDS
TGGAAACTTGCTTTGTTCCA+AGG 0.501688 7.3:+4565423 None:intergenic
AAGCTTGTGTTGCAAGGAAA+AGG 0.501879 7.3:-4566276 MS.gene050414:CDS
TTGCTTACCAACTCTTCCCA+TGG 0.504038 7.3:+4565403 None:intergenic
TCCATTGTTCCATCAAGGCC+AGG 0.507048 7.3:+4566101 None:intergenic
GAATTCATCAATCTATCAGA+TGG 0.508626 7.3:+4567169 None:intergenic
TCATTATTTGATTTATCTGA+GGG 0.509766 7.3:-4567364 MS.gene050414:CDS
CAAGTTTCCATGGGAAGAGT+TGG 0.510287 7.3:-4565410 MS.gene050414:intron
CAATGTTCCTTGGATTGATG+AGG 0.510869 7.3:-4564106 MS.gene050414:CDS
TTGCCACCAAACTTTGTGAC+TGG 0.510959 7.3:+4564333 None:intergenic
GAACTGAAAGAAACATTCTC+AGG 0.511175 7.3:+4567301 None:intergenic
AACATGGTGGTCTACTCAAT+GGG 0.514470 7.3:-4567098 MS.gene050414:CDS
ATTTGTGCTAAATTTCATGC+TGG 0.516195 7.3:-4565131 MS.gene050414:CDS
GCGATTCACTTGAATAAGCA+AGG 0.518180 7.3:+4564196 None:intergenic
ATTAAGGAGTTGATTTCCAA+AGG 0.521590 7.3:-4566458 MS.gene050414:CDS
CAACTGTCAAGGGGCAGGGT+GGG 0.523724 7.3:-4564589 MS.gene050414:CDS
GATCTTCCATTGTTCCATCA+AGG 0.523766 7.3:+4566096 None:intergenic
GTGGAATTCGGTGGAGCCAT+GGG 0.526067 7.3:+4567412 None:intergenic
TGCATGTAACTGAAGTTGAA+TGG 0.527632 7.3:-4564506 MS.gene050414:CDS
ATTGGTGCTTTCAACTGTCA+AGG 0.528036 7.3:-4564600 MS.gene050414:CDS
GAATGCTACAAGCCAATAGT+TGG 0.529509 7.3:-4564534 MS.gene050414:CDS
GCGTTTGAGTGGCTGGGTGA+TGG 0.533274 7.3:-4564141 MS.gene050414:CDS
CCAAAAGAGCACAAGTTTAG+GGG 0.533366 7.3:-4564564 MS.gene050414:CDS
AACATGTTGGTCAACCCAAT+TGG 0.534399 7.3:+4564297 None:intergenic
GTTCCAGTCACAAAGTTTGG+TGG 0.534941 7.3:-4564336 MS.gene050414:CDS
GCTGGCTCAAGAGCTATTTG+TGG 0.541307 7.3:-4565113 MS.gene050414:CDS
GTGGTGCTTGGGGTGGTGTG+AGG 0.542369 7.3:-4566172 MS.gene050414:CDS
TAAATTTGGTTGGTGTACTT+GGG 0.545091 7.3:-4566756 MS.gene050414:CDS
GTCATTATTTGATTTATCTG+AGG 0.545173 7.3:-4567365 MS.gene050414:CDS
AATTCATCAATCTATCAGAT+GGG 0.545924 7.3:+4567170 None:intergenic
AGATCCTAATGGTGATCCAA+TGG 0.546823 7.3:-4565258 MS.gene050414:CDS
TCGTTATCATTGATGATGGA+TGG 0.546866 7.3:-4566652 MS.gene050414:CDS
TCCTATAATAGCTTATGGAT+GGG 0.546975 7.3:-4565197 MS.gene050414:CDS
GCATGTAACTGAAGTTGAAT+GGG 0.548533 7.3:-4564505 MS.gene050414:CDS
AGACAATCTCTAGTAGGAAG+AGG 0.549867 7.3:+4564990 None:intergenic
TGTGGAATTCGGTGGAGCCA+TGG 0.550203 7.3:+4567411 None:intergenic
GTCATGATTTATGCTGAAAG+TGG 0.552756 7.3:-4566935 MS.gene050414:CDS
TCAATTGAATGGTTCTGAAG+TGG 0.554683 7.3:-4564163 MS.gene050414:CDS
CAAAAGGCGGCGTTGAACCA+AGG 0.555881 7.3:-4566676 MS.gene050414:CDS
TTGGTGCTTTCAACTGTCAA+GGG 0.555981 7.3:-4564599 MS.gene050414:CDS
AGAAGCATCTGATTTGGGTA+AGG 0.557243 7.3:-4564472 MS.gene050414:CDS
AAGAAACTTGTGTTCCCTGA+TGG 0.557362 7.3:-4565038 MS.gene050414:CDS
CATGCATTATGTGGTGCTTG+GGG 0.560019 7.3:-4566182 MS.gene050414:CDS
ATTTAGTTGATAAATTTGGT+TGG 0.560697 7.3:-4566766 MS.gene050414:CDS
ATTTATTTGAGTGATAATGT+TGG 0.562359 7.3:-4565083 MS.gene050414:CDS
GATCCTAATGGTGATCCAAT+GGG 0.563604 7.3:-4565257 MS.gene050414:CDS
AAACATTCTCAGGAACATCA+TGG 0.565376 7.3:+4567311 None:intergenic
TTGCCAAAGCTTACTATGAA+GGG 0.565388 7.3:-4565523 MS.gene050414:CDS
CAAAATTTGGAACTTCAACA+AGG 0.568909 7.3:-4564931 MS.gene050414:intron
AGGCCAGGTGAAAGTTTGCA+AGG 0.571791 7.3:+4566116 None:intergenic
GCAAAGAATCTTGTTCTTGG+TGG 0.572951 7.3:-4566590 MS.gene050414:CDS
TTCAGCAAGATAAGAGTGCA+TGG 0.574107 7.3:+4566001 None:intergenic
AAATGACTGGAAGGCTTCGT+AGG 0.575794 7.3:-4566562 MS.gene050414:CDS
TGCTGAAAGTGGTTCAACAA+AGG 0.580908 7.3:-4566924 MS.gene050414:CDS
GATTTGAGGACTAAGTTCAA+AGG 0.583446 7.3:-4566227 MS.gene050414:CDS
TCCACCACTATTGAACATGT+TGG 0.584769 7.3:+4564284 None:intergenic
GGAACAAAGCAAGTTTCCAT+GGG 0.587236 7.3:-4565419 MS.gene050414:CDS
ACCTGGCCTTGATGGAACAA+TGG 0.589366 7.3:-4566102 MS.gene050414:CDS
AAAATTGTATAGCTCAAATG+TGG 0.591781 7.3:+4564359 None:intergenic
AGGTGGGGCATTTGAATCAG+AGG 0.593587 7.3:+4567258 None:intergenic
GGTGGGGCATTTGAATCAGA+GGG 0.593672 7.3:+4567259 None:intergenic
TATAGGAATGATCACAGCAT+AGG 0.594324 7.3:+4567006 None:intergenic
TGGCAAAGCATTAGTTTGGA+TGG 0.596303 7.3:-4566632 MS.gene050414:CDS
ATGACATGATCATCAGAACC+TGG 0.596806 7.3:+4566953 None:intergenic
GGCTCAAGAGCTATTTGTGG+TGG 0.597968 7.3:-4565110 MS.gene050414:CDS
GATTTGGAATATGTTGAAAG+TGG 0.598008 7.3:-4564252 MS.gene050414:CDS
TCAACTGTCAAGGGGCAGGG+TGG 0.598050 7.3:-4564590 MS.gene050414:CDS
GAATTGAACATGAGCATTTG+GGG 0.600360 7.3:-4566436 MS.gene050414:CDS
ATGGTTTGAAGGCTTTCACA+AGG 0.601600 7.3:-4566250 MS.gene050414:CDS
CTTGGTGGTGAACAAATGAC+TGG 0.601615 7.3:-4566575 MS.gene050414:CDS
TTGACCAACATGTTCAATAG+TGG 0.601821 7.3:-4564288 MS.gene050414:CDS
TGGTTTGAAGGCTTTCACAA+GGG 0.602786 7.3:-4566249 MS.gene050414:CDS
GGGTAAGGCAGAAGAGTATG+TGG 0.602965 7.3:-4564457 MS.gene050414:CDS
ACCAACATGTTCAATAGTGG+TGG 0.603550 7.3:-4564285 MS.gene050414:CDS
GCATTATGTGGTGCTTGGGG+TGG 0.604624 7.3:-4566179 MS.gene050414:CDS
CTTCATAGTAAGCTTTGGCA+AGG 0.607720 7.3:+4565525 None:intergenic
TCATCAATGATAACGAACCT+TGG 0.607763 7.3:+4566659 None:intergenic
GCAAAGATTAAGGTTAAAGG+TGG 0.619493 7.3:-4564228 MS.gene050414:CDS
GGCCAGGTGAAAGTTTGCAA+GGG 0.623453 7.3:+4566117 None:intergenic
TCAGGAACATCATGGAACAA+AGG 0.625935 7.3:+4567319 None:intergenic
TGGTGGTCTACTCAATGGGT+TGG 0.627621 7.3:-4567094 MS.gene050414:CDS
AGGCTTCGTAGGCTTGGTGA+AGG 0.628128 7.3:-4566551 MS.gene050414:CDS
GTGGTGAACAAATGACTGGA+AGG 0.628570 7.3:-4566571 MS.gene050414:CDS
GAAGTGGCGTTTGAGTGGCT+GGG 0.630895 7.3:-4564147 MS.gene050414:CDS
TCAACGGTTGTGGAATTCGG+TGG 0.631067 7.3:+4567403 None:intergenic
GTTCTGAAGTGGCGTTTGAG+TGG 0.631457 7.3:-4564152 MS.gene050414:CDS
TCGTATATAAAACAGTATGG+AGG 0.631649 7.3:-4564627 MS.gene050414:intron
CAAAAGAGCACAAGTTTAGG+GGG 0.633226 7.3:-4564563 MS.gene050414:CDS
TGGTGCTTTCAACTGTCAAG+GGG 0.636041 7.3:-4564598 MS.gene050414:CDS
TTGTATAGCTCAAATGTGGA+TGG 0.640248 7.3:+4564363 None:intergenic
ATTCATCAATCTATCAGATG+GGG 0.644616 7.3:+4567171 None:intergenic
CCAGCAGCCTCATCAATCCA+AGG 0.644799 7.3:+4564099 None:intergenic
ATGTGGAAGCTTGTGTTGCA+AGG 0.653096 7.3:-4566282 MS.gene050414:CDS
GTTTGGATGATGTTTATGTG+TGG 0.662366 7.3:-4566205 MS.gene050414:CDS
GAGGGAAAGTTTAAGGCGAG+AGG 0.674257 7.3:-4567346 MS.gene050414:CDS
TATGTGTGTGATAAATATGG+AGG 0.686908 7.3:-4565557 MS.gene050414:CDS
TGCTGAATCTGGCGTCACAG+GGG 0.702078 7.3:-4565985 MS.gene050414:CDS
AACAATGGAAGATCTTGCTG+TGG 0.739747 7.3:-4566087 MS.gene050414:CDS
GGATGGTGCTGATCATAACG+AGG 0.786161 7.3:-4566615 MS.gene050414:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAGCTTAT+AGG + chr7.3:4566791-4566810 None:intergenic 10.0%
!! TAAAAAAAGCGATTATTATT+TGG + chr7.3:4565885-4565904 None:intergenic 15.0%
!! TAACTAACTATTAGTTAATT+TGG + chr7.3:4565625-4565644 None:intergenic 15.0%
!! TATGTACAAAAAAGTTTATA+AGG + chr7.3:4565716-4565735 None:intergenic 15.0%
!!! AAGCTTTTTTTTTTTTTTGA+AGG - chr7.3:4566793-4566812 MS.gene050414:CDS 15.0%
!!! CAATGTATTTGATTTAAAAA+AGG + chr7.3:4565800-4565819 None:intergenic 15.0%
!! AAGTTCAAAAAATATGAAAG+TGG - chr7.3:4564956-4564975 MS.gene050414:CDS 20.0%
!! ACATTATCACTCAAATAAAT+TGG + chr7.3:4566397-4566416 None:intergenic 20.0%
!! ATCATTCCTATAATTGAAAA+AGG - chr7.3:4564485-4564504 MS.gene050414:CDS 20.0%
!! CCAAATTTATCAACTAAATT+TGG + chr7.3:4564713-4564732 None:intergenic 20.0%
!! CTTTGCATATTTATTATTGA+TGG - chr7.3:4566628-4566647 MS.gene050414:CDS 20.0%
!! GTTATTACATAATAGCTTAT+AGG + chr7.3:4566825-4566844 None:intergenic 20.0%
!! TGTTGAAATATAATAGTTAG+CGG - chr7.3:4565675-4565694 MS.gene050414:intron 20.0%
!!! ATTTAGTTGATAAATTTGGT+TGG - chr7.3:4564714-4564733 MS.gene050414:intron 20.0%
!!! ATTTATTTGAGTGATAATGT+TGG - chr7.3:4566397-4566416 MS.gene050414:CDS 20.0%
!!! CCAAATTTAGTTGATAAATT+TGG - chr7.3:4564710-4564729 MS.gene050414:intron 20.0%
!!! CTAAAACCTTTTTCAATTAT+AGG + chr7.3:4564494-4564513 None:intergenic 20.0%
!!! CTATAATTGAAAAAGGTTTT+AGG - chr7.3:4564492-4564511 MS.gene050414:CDS 20.0%
!!! TCATTATTTGATTTATCTGA+GGG - chr7.3:4564116-4564135 MS.gene050414:CDS 20.0%
!!! TTAATCGTTTTTGGATTAAA+AGG + chr7.3:4565007-4565026 None:intergenic 20.0%
!!! TTTTAATCCAAAAACGATTA+AGG - chr7.3:4565006-4565025 MS.gene050414:CDS 20.0%
!!! TTTTCGTATATAAAACAGTA+TGG - chr7.3:4566850-4566869 MS.gene050414:CDS 20.0%
! AAAATTGTATAGCTCAAATG+TGG + chr7.3:4567124-4567143 None:intergenic 25.0%
! AAAATTGTTGAAGGTTCAAT+TGG - chr7.3:4565418-4565437 MS.gene050414:CDS 25.0%
! AAACAACTGTTCTCAAAATT+TGG - chr7.3:4566536-4566555 MS.gene050414:CDS 25.0%
! AATTCATCAATCTATCAGAT+GGG + chr7.3:4564313-4564332 None:intergenic 25.0%
! ATTGTTCCTATAATAGCTTA+TGG - chr7.3:4566278-4566297 MS.gene050414:CDS 25.0%
! ATTTACAAATGGAAACTCAA+TGG - chr7.3:4564423-4564442 MS.gene050414:CDS 25.0%
! CATGAAATTTAGCACAAATA+TGG + chr7.3:4566348-4566367 None:intergenic 25.0%
! CATGGAATCATAAAAATCAT+TGG + chr7.3:4565464-4565483 None:intergenic 25.0%
! GAATATGTGTGTGATAAATA+TGG - chr7.3:4565920-4565939 MS.gene050414:intron 25.0%
! GATAGATTGATGAATTCATT+GGG - chr7.3:4564317-4564336 MS.gene050414:CDS 25.0%
! GGTTGAATGATAAATTGAAT+TGG + chr7.3:4567099-4567118 None:intergenic 25.0%
! TATTTAACTGTTAATCCTGT+TGG - chr7.3:4564755-4564774 MS.gene050414:intron 25.0%
! TCCATTTCCATTAAAATTCT+TGG + chr7.3:4565999-4566018 None:intergenic 25.0%
! TGATAGATTGATGAATTCAT+TGG - chr7.3:4564316-4564335 MS.gene050414:CDS 25.0%
! TTATAGGAATACAAGAAACA+CGG + chr7.3:4566775-4566794 None:intergenic 25.0%
!! AAAAAGCAAGAACTTTTTGA+AGG + chr7.3:4564253-4564272 None:intergenic 25.0%
!! AAAGAAATTGATGATCTCTT+TGG - chr7.3:4565142-4565161 MS.gene050414:CDS 25.0%
!! GTCATTATTTGATTTATCTG+AGG - chr7.3:4564115-4564134 MS.gene050414:CDS 25.0%
!! TTTATCTAAGAGTTCTGATT+TGG - chr7.3:4565087-4565106 MS.gene050414:CDS 25.0%
!!! AATTGAATTGGTTCAGATTT+TGG + chr7.3:4567087-4567106 None:intergenic 25.0%
!!! AATTTTGGTATTAAGATGTG+TGG + chr7.3:4565341-4565360 None:intergenic 25.0%
!!! TATGAAAGTGGATTGTTATT+AGG - chr7.3:4564968-4564987 MS.gene050414:CDS 25.0%
AACATCAAATTTGCACCAAT+TGG - chr7.3:4567168-4567187 MS.gene050414:CDS 30.0%
AAGAGGCTTATAGTGTTATA+AGG - chr7.3:4564645-4564664 MS.gene050414:intron 30.0%
AATTCATTGGGTAGTTTCAA+TGG - chr7.3:4564329-4564348 MS.gene050414:CDS 30.0%
ACATCAAATTTGCACCAATT+GGG - chr7.3:4567169-4567188 MS.gene050414:CDS 30.0%
AGAGGCTTATAGTGTTATAA+GGG - chr7.3:4564646-4564665 MS.gene050414:intron 30.0%
AGTGTTCAAAAAAGTGAATG+TGG - chr7.3:4565181-4565200 MS.gene050414:CDS 30.0%
ATTCATCAATCTATCAGATG+GGG + chr7.3:4564312-4564331 None:intergenic 30.0%
ATTTGTGCTAAATTTCATGC+TGG - chr7.3:4566349-4566368 MS.gene050414:CDS 30.0%
CCAAAGAAGTTTCAATTGAA+TGG - chr7.3:4567306-4567325 MS.gene050414:CDS 30.0%
CCATTCAATTGAAACTTCTT+TGG + chr7.3:4567309-4567328 None:intergenic 30.0%
GAATTCATCAATCTATCAGA+TGG + chr7.3:4564314-4564333 None:intergenic 30.0%
TATGTGTGTGATAAATATGG+AGG - chr7.3:4565923-4565942 MS.gene050414:intron 30.0%
TCCATTAAAATTCTTGGCAA+TGG + chr7.3:4565993-4566012 None:intergenic 30.0%
TCCTATAATAGCTTATGGAT+GGG - chr7.3:4566283-4566302 MS.gene050414:CDS 30.0%
TCCTTATGATTTGATGAAAG+AGG - chr7.3:4564628-4564647 MS.gene050414:intron 30.0%
TCGTATATAAAACAGTATGG+AGG - chr7.3:4566853-4566872 MS.gene050414:CDS 30.0%
TTCCTATAATAGCTTATGGA+TGG - chr7.3:4566282-4566301 MS.gene050414:CDS 30.0%
TTGAAAAGACAATCTCTAGT+AGG + chr7.3:4566499-4566518 None:intergenic 30.0%
TTTATCTGAGGGAAAGTTTA+AGG - chr7.3:4564127-4564146 MS.gene050414:CDS 30.0%
! AAGACTTTGTCAGTATTTTC+AGG - chr7.3:4564354-4564373 MS.gene050414:CDS 30.0%
! AGAGGAAAATGTATGCATTT+TGG + chr7.3:4566475-4566494 None:intergenic 30.0%
! ATAAATTTGGTTGGTGTACT+TGG - chr7.3:4564723-4564742 MS.gene050414:intron 30.0%
! ATCAACTCCTTAATCGTTTT+TGG + chr7.3:4565016-4565035 None:intergenic 30.0%
! ATTAAGGAGTTGATTTCCAA+AGG - chr7.3:4565022-4565041 MS.gene050414:CDS 30.0%
! CAAAATTTGGAACTTCAACA+AGG - chr7.3:4566549-4566568 MS.gene050414:CDS 30.0%
! GAGGAAAATGTATGCATTTT+GGG + chr7.3:4566474-4566493 None:intergenic 30.0%
! GATTTGGAATATGTTGAAAG+TGG - chr7.3:4567228-4567247 MS.gene050414:CDS 30.0%
! TAAATTTGGTTGGTGTACTT+GGG - chr7.3:4564724-4564743 MS.gene050414:intron 30.0%
! TAGTTGCTAGTATTGAAGTT+TGG + chr7.3:4566600-4566619 None:intergenic 30.0%
! TCCATTGCCAAGAATTTTAA+TGG - chr7.3:4565989-4566008 MS.gene050414:CDS 30.0%
!! AAGAAAGAAGCATCTGATTT+GGG - chr7.3:4567003-4567022 MS.gene050414:CDS 30.0%
!! ACAGTTGTTTTGTCAAATAG+AGG + chr7.3:4566526-4566545 None:intergenic 30.0%
!! ATCGTTTTTGGATTAAAAGG+AGG + chr7.3:4565004-4565023 None:intergenic 30.0%
!! ATCTGGTTCTGATTTACAAA+TGG - chr7.3:4564412-4564431 MS.gene050414:CDS 30.0%
!! CAGTTGTTTTGTCAAATAGA+GGG + chr7.3:4566525-4566544 None:intergenic 30.0%
!! GCCAAGAATTTTAATGGAAA+TGG - chr7.3:4565995-4566014 MS.gene050414:CDS 30.0%
!! TAAAAATCATTGGCTTGATC+AGG + chr7.3:4565454-4565473 None:intergenic 30.0%
!!! GTATTTTCAGGTTCAAAACA+TGG - chr7.3:4564366-4564385 MS.gene050414:CDS 30.0%
!!! TCTCAACACTTTTAGGTTAT+TGG - chr7.3:4564673-4564692 MS.gene050414:intron 30.0%
!!! TGCAATGATTTTTTCTTCCT+TGG - chr7.3:4566040-4566059 MS.gene050414:CDS 30.0%
AAACATTCTCAGGAACATCA+TGG + chr7.3:4564172-4564191 None:intergenic 35.0%
AAGATTAAGGTTAAAGGTGG+TGG - chr7.3:4567255-4567274 MS.gene050414:CDS 35.0%
AGGAATTGAACATGAGCATT+TGG - chr7.3:4565042-4565061 MS.gene050414:CDS 35.0%
AGGTTCGTTATCATTGATGA+TGG - chr7.3:4564824-4564843 MS.gene050414:intron 35.0%
ATGCTCATGTTCAATTCCTT+TGG + chr7.3:4565041-4565060 None:intergenic 35.0%
GAACTGAAAGAAACATTCTC+AGG + chr7.3:4564182-4564201 None:intergenic 35.0%
GAATTGAACATGAGCATTTG+GGG - chr7.3:4565044-4565063 MS.gene050414:CDS 35.0%
GATGCAAAGAATCTTGTTCT+TGG - chr7.3:4564887-4564906 MS.gene050414:intron 35.0%
GATTTGAGGACTAAGTTCAA+AGG - chr7.3:4565253-4565272 MS.gene050414:CDS 35.0%
GCAAAGATTAAGGTTAAAGG+TGG - chr7.3:4567252-4567271 MS.gene050414:CDS 35.0%
GCATGTAACTGAAGTTGAAT+GGG - chr7.3:4566975-4566994 MS.gene050414:CDS 35.0%
GCCTCTTTCATCAAATCATA+AGG + chr7.3:4564632-4564651 None:intergenic 35.0%
GCTGTGGTTAAAATTGTTGA+AGG - chr7.3:4565409-4565428 MS.gene050414:intron 35.0%
GGAATTGAACATGAGCATTT+GGG - chr7.3:4565043-4565062 MS.gene050414:CDS 35.0%
GGATTAAAAGGAGGTGAATT+AGG + chr7.3:4564995-4565014 None:intergenic 35.0%
GGTGCAAAGATTAAGGTTAA+AGG - chr7.3:4567249-4567268 MS.gene050414:CDS 35.0%
GTCATGATTTATGCTGAAAG+TGG - chr7.3:4564545-4564564 MS.gene050414:CDS 35.0%
GTTTGGATGATGTTTATGTG+TGG - chr7.3:4565275-4565294 MS.gene050414:CDS 35.0%
TAACCCTTCATAGTAAGCTT+TGG + chr7.3:4565963-4565982 None:intergenic 35.0%
TATAGGAATGATCACAGCAT+AGG + chr7.3:4564477-4564496 None:intergenic 35.0%
TATTATCTTACACCGACACA+TGG - chr7.3:4566674-4566693 MS.gene050414:CDS 35.0%
TCCCATCCATAAGCTATTAT+AGG + chr7.3:4566287-4566306 None:intergenic 35.0%
TGAAAGTGGTGCAAAGATTA+AGG - chr7.3:4567242-4567261 MS.gene050414:CDS 35.0%
TGCATGTAACTGAAGTTGAA+TGG - chr7.3:4566974-4566993 MS.gene050414:CDS 35.0%
TGGTGGAACAATTCTTGATT+TGG - chr7.3:4567212-4567231 MS.gene050414:CDS 35.0%
TTAAATGTGACTCCATGTGT+CGG + chr7.3:4566689-4566708 None:intergenic 35.0%
TTGACCAACATGTTCAATAG+TGG - chr7.3:4567192-4567211 MS.gene050414:CDS 35.0%
TTGCCAAAGCTTACTATGAA+GGG - chr7.3:4565957-4565976 MS.gene050414:intron 35.0%
TTGTATAGCTCAAATGTGGA+TGG + chr7.3:4567120-4567139 None:intergenic 35.0%
TTTGTTCCAGTCACAAAGTT+TGG - chr7.3:4567141-4567160 MS.gene050414:CDS 35.0%
! AAGTTGTGATTTTTGTGTGC+AGG - chr7.3:4566181-4566200 MS.gene050414:CDS 35.0%
! AAGTTTGCAAGGGACAATTT+TGG + chr7.3:4565356-4565375 None:intergenic 35.0%
! AATTGACTCTCAATGTTCCT+TGG - chr7.3:4567364-4567383 MS.gene050414:CDS 35.0%
! ACAGCATAGGATTTGATTTC+AGG + chr7.3:4564464-4564483 None:intergenic 35.0%
! AGTTGTGATTTTTGTGTGCA+GGG - chr7.3:4566182-4566201 MS.gene050414:CDS 35.0%
! GAAATTGATGATCTCTTTGG+TGG - chr7.3:4565145-4565164 MS.gene050414:CDS 35.0%
! GACTATTGTAGTGTTTGTTG+TGG - chr7.3:4565859-4565878 MS.gene050414:intron 35.0%
! TCATCAATGATAACGAACCT+TGG + chr7.3:4564824-4564843 None:intergenic 35.0%
!! AATCCTGTTGGTGTTTTTCA+TGG - chr7.3:4564767-4564786 MS.gene050414:intron 35.0%
!! AGAACTTTTTGAAGGAGTGA+AGG + chr7.3:4564245-4564264 None:intergenic 35.0%
!! CTCAGTTTTGATGAGATCAA+CGG + chr7.3:4564096-4564115 None:intergenic 35.0%
!! GAAGAAAGAAGCATCTGATT+TGG - chr7.3:4567002-4567021 MS.gene050414:CDS 35.0%
!! TCAATTGAATGGTTCTGAAG+TGG - chr7.3:4567317-4567336 MS.gene050414:CDS 35.0%
!! TCGTTATCATTGATGATGGA+TGG - chr7.3:4564828-4564847 MS.gene050414:intron 35.0%
!!! ATTTTGGGATTGTACCATCA+GGG + chr7.3:4566459-4566478 None:intergenic 35.0%
!!! GTTCTTGCTTTTTCTCACAA+AGG - chr7.3:4564260-4564279 MS.gene050414:CDS 35.0%
!!! TTTTCAGGTTCAAAACATGG+TGG - chr7.3:4564369-4564388 MS.gene050414:CDS 35.0%
!!! TTTTGGTTCCAAGATCCTAA+TGG - chr7.3:4566211-4566230 MS.gene050414:CDS 35.0%
AAACAGTATGGAGGAGTGAT+TGG - chr7.3:4566862-4566881 MS.gene050414:CDS 40.0%
AAACATGGTGGTCTACTCAA+TGG - chr7.3:4564381-4564400 MS.gene050414:CDS 40.0%
AACAATGGAAGATCTTGCTG+TGG - chr7.3:4565393-4565412 MS.gene050414:intron 40.0%
AACATGGTGGTCTACTCAAT+GGG - chr7.3:4564382-4564401 MS.gene050414:CDS 40.0%
AACATGTTGGTCAACCCAAT+TGG + chr7.3:4567186-4567205 None:intergenic 40.0%
AAGAAACTTGTGTTCCCTGA+TGG - chr7.3:4566442-4566461 MS.gene050414:CDS 40.0%
AAGCTTGTGTTGCAAGGAAA+AGG - chr7.3:4565204-4565223 MS.gene050414:CDS 40.0%
ACAGATGATTCGACCTGATT+GGG - chr7.3:4566306-4566325 MS.gene050414:CDS 40.0%
ACATGCACAGTACCAACTAT+TGG + chr7.3:4566961-4566980 None:intergenic 40.0%
ACCAACATGTTCAATAGTGG+TGG - chr7.3:4567195-4567214 MS.gene050414:CDS 40.0%
AGACAATCTCTAGTAGGAAG+AGG + chr7.3:4566493-4566512 None:intergenic 40.0%
AGACCATGAAAAACACCAAC+AGG + chr7.3:4564773-4564792 None:intergenic 40.0%
AGATCAACGGTTGTGGAATT+CGG + chr7.3:4564083-4564102 None:intergenic 40.0%
AGATCCTAATGGTGATCCAA+TGG - chr7.3:4566222-4566241 MS.gene050414:CDS 40.0%
ATGACATGATCATCAGAACC+TGG + chr7.3:4564530-4564549 None:intergenic 40.0%
ATGGTTTGAAGGCTTTCACA+AGG - chr7.3:4565230-4565249 MS.gene050414:CDS 40.0%
CAATGTTCCTTGGATTGATG+AGG - chr7.3:4567374-4567393 MS.gene050414:CDS 40.0%
CACTCTTATCTTGCTGAATC+TGG - chr7.3:4565484-4565503 MS.gene050414:CDS 40.0%
CTTGCCAAAGCTTACTATGA+AGG - chr7.3:4565956-4565975 MS.gene050414:intron 40.0%
GAATGCTACAAGCCAATAGT+TGG - chr7.3:4566946-4566965 MS.gene050414:CDS 40.0%
GAGGACTAAGTTCAAAGGTT+TGG - chr7.3:4565258-4565277 MS.gene050414:CDS 40.0%
GATCCTAATGGTGATCCAAT+GGG - chr7.3:4566223-4566242 MS.gene050414:CDS 40.0%
GATCTTCCATTGTTCCATCA+AGG + chr7.3:4565387-4565406 None:intergenic 40.0%
GCAAAGAATCTTGTTCTTGG+TGG - chr7.3:4564890-4564909 MS.gene050414:intron 40.0%
GCGATTCACTTGAATAAGCA+AGG + chr7.3:4567287-4567306 None:intergenic 40.0%
GGAACAAAGCAAGTTTCCAT+GGG - chr7.3:4566061-4566080 MS.gene050414:CDS 40.0%
GTATTAAGATGTGTGGTTCC+TGG + chr7.3:4565334-4565353 None:intergenic 40.0%
TATGTGTGGCATGCATTATG+TGG - chr7.3:4565289-4565308 MS.gene050414:intron 40.0%
TCAGGAACATCATGGAACAA+AGG + chr7.3:4564164-4564183 None:intergenic 40.0%
TCCACCACTATTGAACATGT+TGG + chr7.3:4567199-4567218 None:intergenic 40.0%
TCTATCAGATGGGGTTTCAT+TGG + chr7.3:4564303-4564322 None:intergenic 40.0%
TCTCACAAAGGTGGTTTCTT+TGG - chr7.3:4564272-4564291 MS.gene050414:CDS 40.0%
TGCTGAAAGTGGTTCAACAA+AGG - chr7.3:4564556-4564575 MS.gene050414:CDS 40.0%
TGGAACAAAGCAAGTTTCCA+TGG - chr7.3:4566060-4566079 MS.gene050414:CDS 40.0%
TGGTTTGAAGGCTTTCACAA+GGG - chr7.3:4565231-4565250 MS.gene050414:CDS 40.0%
TGTAACCAAAAAGCTCCCAT+TGG + chr7.3:4566241-4566260 None:intergenic 40.0%
TGTTGCAAGGAAAAGGAGTA+TGG - chr7.3:4565211-4565230 MS.gene050414:CDS 40.0%
TTGGATCACCATTAGGATCT+TGG + chr7.3:4566222-4566241 None:intergenic 40.0%
TTTGATGAGATCAACGGTTG+TGG + chr7.3:4564090-4564109 None:intergenic 40.0%
! ACCCAAAAGAGCACAAGTTT+AGG - chr7.3:4566914-4566933 MS.gene050414:CDS 40.0%
! ATTGGTGCTTTCAACTGTCA+AGG - chr7.3:4566880-4566899 MS.gene050414:CDS 40.0%
! CAAAAGAGCACAAGTTTAGG+GGG - chr7.3:4566917-4566936 MS.gene050414:CDS 40.0%
! CCAAAAGAGCACAAGTTTAG+GGG - chr7.3:4566916-4566935 MS.gene050414:CDS 40.0%
! CCCAAAAGAGCACAAGTTTA+GGG - chr7.3:4566915-4566934 MS.gene050414:CDS 40.0%
! CCCTAAACTTGTGCTCTTTT+GGG + chr7.3:4566918-4566937 None:intergenic 40.0%
! CTTCATAGTAAGCTTTGGCA+AGG + chr7.3:4565958-4565977 None:intergenic 40.0%
! GGAAAAGGAGTATGGTTTGA+AGG - chr7.3:4565219-4565238 MS.gene050414:CDS 40.0%
! GGGTTCATCTCAACACTTTT+AGG - chr7.3:4564666-4564685 MS.gene050414:intron 40.0%
! GTTGTGATTTTTGTGTGCAG+GGG - chr7.3:4566183-4566202 MS.gene050414:CDS 40.0%
! TGGAAACTTGCTTTGTTCCA+AGG + chr7.3:4566060-4566079 None:intergenic 40.0%
! TGGATGGCAAAGCATTAGTT+TGG - chr7.3:4564844-4564863 MS.gene050414:intron 40.0%
! TGGCAAAGCATTAGTTTGGA+TGG - chr7.3:4564848-4564867 MS.gene050414:intron 40.0%
! TTCAGCAAGATAAGAGTGCA+TGG + chr7.3:4565482-4565501 None:intergenic 40.0%
! TTGGTGCTTTCAACTGTCAA+GGG - chr7.3:4566881-4566900 MS.gene050414:CDS 40.0%
!! ACTATTGGCTTGTAGCATTC+AGG + chr7.3:4566946-4566965 None:intergenic 40.0%
!! ACTCAATGGGTTGGTAAATC+TGG - chr7.3:4564395-4564414 MS.gene050414:CDS 40.0%
!! ACTTTTTGAAGGAGTGAAGG+TGG + chr7.3:4564242-4564261 None:intergenic 40.0%
!! AGAAGCATCTGATTTGGGTA+AGG - chr7.3:4567008-4567027 MS.gene050414:CDS 40.0%
!! CTATTGGCTTGTAGCATTCA+GGG + chr7.3:4566945-4566964 None:intergenic 40.0%
!! CTTGAGGGTTTTTCAAAAGG+CGG - chr7.3:4564791-4564810 MS.gene050414:intron 40.0%
!! CTTTTTGAAGGAGTGAAGGT+GGG + chr7.3:4564241-4564260 None:intergenic 40.0%
!! GGTCTTGAGGGTTTTTCAAA+AGG - chr7.3:4564788-4564807 MS.gene050414:intron 40.0%
!! GGTGTTTTTCATGGTCTTGA+GGG - chr7.3:4564776-4564795 MS.gene050414:intron 40.0%
!! TGGTGTTTTTCATGGTCTTG+AGG - chr7.3:4564775-4564794 MS.gene050414:intron 40.0%
!! TTTTTGAAGGAGTGAAGGTG+GGG + chr7.3:4564240-4564259 None:intergenic 40.0%
!!! ATGGGAGCTTTTTGGTTACA+AGG - chr7.3:4566241-4566260 MS.gene050414:CDS 40.0%
!!! CATTTTGGGATTGTACCATC+AGG + chr7.3:4566460-4566479 None:intergenic 40.0%
!!! CTTGCTTTTTCTCACAAAGG+TGG - chr7.3:4564263-4564282 MS.gene050414:CDS 40.0%
!!! TTTAGGTCTGCACTTTTTCC+AGG - chr7.3:4564509-4564528 MS.gene050414:CDS 40.0%
AAATGACTGGAAGGCTTCGT+AGG - chr7.3:4564918-4564937 MS.gene050414:intron 45.0%
AGGCTTTCACAAGGGATTTG+AGG - chr7.3:4565239-4565258 MS.gene050414:CDS 45.0%
ATGTGGAAGCTTGTGTTGCA+AGG - chr7.3:4565198-4565217 MS.gene050414:CDS 45.0%
CAAGTTTCCATGGGAAGAGT+TGG - chr7.3:4566070-4566089 MS.gene050414:CDS 45.0%
CATGCATTATGTGGTGCTTG+GGG - chr7.3:4565298-4565317 MS.gene050414:intron 45.0%
GACAGATGATTCGACCTGAT+TGG - chr7.3:4566305-4566324 MS.gene050414:CDS 45.0%
GACTGAAACATGTCCCAATC+AGG + chr7.3:4566322-4566341 None:intergenic 45.0%
GCATGCATTATGTGGTGCTT+GGG - chr7.3:4565297-4565316 MS.gene050414:intron 45.0%
GTGGTGAACAAATGACTGGA+AGG - chr7.3:4564909-4564928 MS.gene050414:intron 45.0%
GTTCCAGTCACAAAGTTTGG+TGG - chr7.3:4567144-4567163 MS.gene050414:CDS 45.0%
TGGTGCTTTCAACTGTCAAG+GGG - chr7.3:4566882-4566901 MS.gene050414:CDS 45.0%
TTGCCACCAAACTTTGTGAC+TGG + chr7.3:4567150-4567169 None:intergenic 45.0%
TTGCTTACCAACTCTTCCCA+TGG + chr7.3:4566080-4566099 None:intergenic 45.0%
! CCCCTAAACTTGTGCTCTTT+TGG + chr7.3:4566919-4566938 None:intergenic 45.0%
! GTGATCCAATGGGAGCTTTT+TGG - chr7.3:4566233-4566252 MS.gene050414:CDS 45.0%
!! AAACTTTCACCTGGCCTTGA+TGG - chr7.3:4565370-4565389 MS.gene050414:intron 45.0%
!! CTTGGTGGTGAACAAATGAC+TGG - chr7.3:4564905-4564924 MS.gene050414:intron 45.0%
AGGCCAGGTGAAAGTTTGCA+AGG + chr7.3:4565367-4565386 None:intergenic 50.0%
CTTTCAACTGTCAAGGGGCA+GGG - chr7.3:4566887-4566906 MS.gene050414:CDS 50.0%
GCTCCCATTGGATCACCATT+AGG + chr7.3:4566229-4566248 None:intergenic 50.0%
GGCATGCATTATGTGGTGCT+TGG - chr7.3:4565296-4565315 MS.gene050414:intron 50.0%
GGCCAGGTGAAAGTTTGCAA+GGG + chr7.3:4565366-4565385 None:intergenic 50.0%
GGCTCAAGAGCTATTTGTGG+TGG - chr7.3:4566370-4566389 MS.gene050414:CDS 50.0%
GTCCCTTGCAAACTTTCACC+TGG - chr7.3:4565361-4565380 MS.gene050414:intron 50.0%
TCAACGGTTGTGGAATTCGG+TGG + chr7.3:4564080-4564099 None:intergenic 50.0%
TCCATTGTTCCATCAAGGCC+AGG + chr7.3:4565382-4565401 None:intergenic 50.0%
TGGTGGTCTACTCAATGGGT+TGG - chr7.3:4564386-4564405 MS.gene050414:CDS 50.0%
TTGCTGAATCTGGCGTCACA+GGG - chr7.3:4565494-4565513 MS.gene050414:CDS 50.0%
! AGGTGGGGCATTTGAATCAG+AGG + chr7.3:4564225-4564244 None:intergenic 50.0%
! GAGGGAAAGTTTAAGGCGAG+AGG - chr7.3:4564134-4564153 MS.gene050414:CDS 50.0%
! GCTGGCTCAAGAGCTATTTG+TGG - chr7.3:4566367-4566386 MS.gene050414:CDS 50.0%
! GGCTGCTGGTGTTTCTGATT+TGG - chr7.3:4567395-4567414 MS.gene050414:CDS 50.0%
! GGGTAAGGCAGAAGAGTATG+TGG - chr7.3:4567023-4567042 MS.gene050414:CDS 50.0%
! GGTGGGGCATTTGAATCAGA+GGG + chr7.3:4564224-4564243 None:intergenic 50.0%
!! ACCTGGCCTTGATGGAACAA+TGG - chr7.3:4565378-4565397 MS.gene050414:intron 50.0%
!! GGATGGTGCTGATCATAACG+AGG - chr7.3:4564865-4564884 MS.gene050414:intron 50.0%
!! GTTCTGAAGTGGCGTTTGAG+TGG - chr7.3:4567328-4567347 MS.gene050414:CDS 50.0%
ACTGGAAGGCTTCGTAGGCT+TGG - chr7.3:4564923-4564942 MS.gene050414:intron 55.0%
CCAGCAGCCTCATCAATCCA+AGG + chr7.3:4567384-4567403 None:intergenic 55.0%
CCTTGGATTGATGAGGCTGC+TGG - chr7.3:4567381-4567400 MS.gene050414:CDS 55.0%
CTTGCTGAATCTGGCGTCAC+AGG - chr7.3:4565493-4565512 MS.gene050414:CDS 55.0%
GAAGTGGCGTTTGAGTGGCT+GGG - chr7.3:4567333-4567352 MS.gene050414:CDS 55.0%
GCATTATGTGGTGCTTGGGG+TGG - chr7.3:4565301-4565320 MS.gene050414:intron 55.0%
GCTTTCAACTGTCAAGGGGC+AGG - chr7.3:4566886-4566905 MS.gene050414:CDS 55.0%
TGAAGTGGCGTTTGAGTGGC+TGG - chr7.3:4567332-4567351 MS.gene050414:CDS 55.0%
TGCTGAATCTGGCGTCACAG+GGG - chr7.3:4565495-4565514 MS.gene050414:CDS 55.0%
! CAAAAGGCGGCGTTGAACCA+AGG - chr7.3:4564804-4564823 MS.gene050414:intron 55.0%
! TGTGTGCAGGGGACGACTTT+TGG - chr7.3:4566194-4566213 MS.gene050414:CDS 55.0%
!! AGGCTTCGTAGGCTTGGTGA+AGG - chr7.3:4564929-4564948 MS.gene050414:intron 55.0%
CAACTGTCAAGGGGCAGGGT+GGG - chr7.3:4566891-4566910 MS.gene050414:CDS 60.0%
GCGTTTGAGTGGCTGGGTGA+TGG - chr7.3:4567339-4567358 MS.gene050414:CDS 60.0%
TCAACTGTCAAGGGGCAGGG+TGG - chr7.3:4566890-4566909 MS.gene050414:CDS 60.0%
GTGGTGCTTGGGGTGGTGTG+AGG - chr7.3:4565308-4565327 MS.gene050414:intron 65.0%
GCTTGGGGTGGTGTGAGGCC+AGG - chr7.3:4565313-4565332 MS.gene050414:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 4564071 4567431 4564071 ID=MS.gene050414
chr7.3 mRNA 4564071 4567431 4564071 ID=MS.gene050414.t1;Parent=MS.gene050414
chr7.3 exon 4565965 4567431 4565965 ID=MS.gene050414.t1.exon1;Parent=MS.gene050414.t1
chr7.3 CDS 4565965 4567431 4565965 ID=cds.MS.gene050414.t1;Parent=MS.gene050414.t1
chr7.3 exon 4565411 4565588 4565411 ID=MS.gene050414.t1.exon2;Parent=MS.gene050414.t1
chr7.3 CDS 4565411 4565588 4565411 ID=cds.MS.gene050414.t1;Parent=MS.gene050414.t1
chr7.3 exon 4564932 4565299 4564932 ID=MS.gene050414.t1.exon3;Parent=MS.gene050414.t1
chr7.3 CDS 4564932 4565299 4564932 ID=cds.MS.gene050414.t1;Parent=MS.gene050414.t1
chr7.3 exon 4564071 4564634 4564071 ID=MS.gene050414.t1.exon4;Parent=MS.gene050414.t1
chr7.3 CDS 4564071 4564634 4564071 ID=cds.MS.gene050414.t1;Parent=MS.gene050414.t1
Gene Sequence

>MS.gene050414

ATGGCTCCACCGAATTCCACAACCGTTGATCTCATCAAAACTGAGTCATTATTTGATTTATCTGAGGGAAAGTTTAAGGCGAGAGGTGTTCCTTTGTTCCATGATGTTCCTGAGAATGTTTCTTTCAGTTCATTCTCTTCTATATGCAAACCCTCTGATTCAAATGCCCCACCTTCACTCCTTCAAAAAGTTCTTGCTTTTTCTCACAAAGGTGGTTTCTTTGGATTCTCCAATGAAACCCCATCTGATAGATTGATGAATTCATTGGGTAGTTTCAATGGAAAAGACTTTGTCAGTATTTTCAGGTTCAAAACATGGTGGTCTACTCAATGGGTTGGTAAATCTGGTTCTGATTTACAAATGGAAACTCAATGGATTCTTTTTGATATTCCTGAAATCAAATCCTATGCTGTGATCATTCCTATAATTGAAAAAGGTTTTAGGTCTGCACTTTTTCCAGGTTCTGATGATCATGTCATGATTTATGCTGAAAGTGGTTCAACAAAGGTGAAAGAATCATGTTTCAATGCTATTGCTTATGTTCATTTTTCTGAAAATCCTTATGATTTGATGAAAGAGGCTTATAGTGTTATAAGGGTTCATCTCAACACTTTTAGGTTATTGGAAGAGAAAACACTACCAAATTTAGTTGATAAATTTGGTTGGTGTACTTGGGATGCTTTCTATTTAACTGTTAATCCTGTTGGTGTTTTTCATGGTCTTGAGGGTTTTTCAAAAGGCGGCGTTGAACCAAGGTTCGTTATCATTGATGATGGATGGCAAAGCATTAGTTTGGATGGTGCTGATCATAACGAGGATGCAAAGAATCTTGTTCTTGGTGGTGAACAAATGACTGGAAGGCTTCGTAGGCTTGGTGAAGGAGACAAGTTCAAAAAATATGAAAGTGGATTGTTATTAGGTCCTAATTCACCTCCTTTTAATCCAAAAACGATTAAGGAGTTGATTTCCAAAGGAATTGAACATGAGCATTTGGGGAAGCAAAGAGATCAAGCAATTTTATCTAAGAGTTCTGATTTGGCTGAGATTGAGTCAAAGATCAAGAAACTGATAAAAGAAATTGATGATCTCTTTGGTGGAGAACAAAGTAGTAGTGTTCAAAAAAGTGAATGTGGAAGCTTGTGTTGCAAGGAAAAGGAGTATGGTTTGAAGGCTTTCACAAGGGATTTGAGGACTAAGTTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCATTATGTGGTGCTTGGGGTGGTGTGAGGCCAGGAACCACACATCTTAATACCAAAATTGTCCCTTGCAAACTTTCACCTGGCCTTGATGGAACAATGGAAGATCTTGCTGTGGTTAAAATTGTTGAAGGTTCAATTGGACTAGTTGATCCTGATCAAGCCAATGATTTTTATGATTCCATGCACTCTTATCTTGCTGAATCTGGCGTCACAGGGGTCAAAGTTGATGTCATTCATGTGAGTTTTCTAATTTCAATTTTCTTTTCATAGCTATTAGAAATAATATAGTTTATTAGTGTGTTAGTTTTTTGCAATGAGATACCAAATTAACTAATAGTTAGTTAAATATATATAATAGTCAGCAGTAGTTAGTCTGTTGAAATATAATAGTTAGCGGCAGTTAGTTTTTTTTCCTTATAAACTTTTTTGTACATATATTTATATAGTTAAATTTATAACATGCATATATATATATGATTATTTATTCATGAACATGCCTTTTTTAAATCAAATACATTGCAATTTTTTCTGTTATTGACTAATGACTATATATGATATGACTATTGTAGTGTTTGTTGTGGCCAAATAATAATCGCTTTTTTTATTTATGCAGTGTCTTGAATATGTGTGTGATAAATATGGAGGCAGAGTTGACCTTGCCAAAGCTTACTATGAAGGGTTAACAAAATCCATTGCCAAGAATTTTAATGGAAATGGAATCATTGCTAGCATGCAACAGTGCAATGATTTTTTCTTCCTTGGAACAAAGCAAGTTTCCATGGGAAGAGTTGGTAAGCAATAAGCAATATACAAGCACATGATCAATGAATTTTGTTGTTATTTATTCATACTTACATACATATGTAAATAAATAAAAAATAAGTTGTGATTTTTGTGTGCAGGGGACGACTTTTGGTTCCAAGATCCTAATGGTGATCCAATGGGAGCTTTTTGGTTACAAGGTGTGCACATGATTCATTGTTCCTATAATAGCTTATGGATGGGACAGATGATTCGACCTGATTGGGACATGTTTCAGTCAGACCATATTTGTGCTAAATTTCATGCTGGCTCAAGAGCTATTTGTGGTGGTCCAATTTATTTGAGTGATAATGTTGGCTCTCACGACTTTGATCTGATTAAGAAACTTGTGTTCCCTGATGGTACAATCCCAAAATGCATACATTTTCCTCTTCCTACTAGAGATTGTCTTTTCAAAAACCCTCTATTTGACAAAACAACTGTTCTCAAAATTTGGAACTTCAACAAGGTATTCTCTCTCACACATTTTTTATGCCAAACTTCAATACTAGCAACTAATAAAATACTTTGCATATTTATTATTGATGGTGTGTCTGTTGTTCAATACATATTATTATCTTACACCGACACATGGAGTCACATTTAATTATCTTTATTACTTACATTATTATTGACATTGCGTGTCATTGAAGTTTTCGTGTGTTTGTGTCCGTGTTTCTTGTATTCCTATAAGCTTTTTTTTTTTTTTGAAGGAGTATTCCTATAAGCTATTATGTAATAACAATTTTTTTCGTATATAAAACAGTATGGAGGAGTGATTGGTGCTTTCAACTGTCAAGGGGCAGGGTGGGACCCAAAAGAGCACAAGTTTAGGGGGTTCCCTGAATGCTACAAGCCAATAGTTGGTACTGTGCATGTAACTGAAGTTGAATGGGATCAGAAGAAAGAAGCATCTGATTTGGGTAAGGCAGAAGAGTATGTGGTCTACTTCAATCAAGCTGAAGAACTTTCTTTGATGACTCCAAAATCTGAACCAATTCAATTTATCATTCAACCATCCACATTTGAGCTATACAATTTTGTTCCAGTCACAAAGTTTGGTGGCAACATCAAATTTGCACCAATTGGGTTGACCAACATGTTCAATAGTGGTGGAACAATTCTTGATTTGGAATATGTTGAAAGTGGTGCAAAGATTAAGGTTAAAGGTGGTGGAAATTTCCTTGCTTATTCAAGTGAATCGCCAAAGAAGTTTCAATTGAATGGTTCTGAAGTGGCGTTTGAGTGGCTGGGTGATGGAAAATTGACTCTCAATGTTCCTTGGATTGATGAGGCTGCTGGTGTTTCTGATTTGGCAATTTTTTTCTAG

Protein sequence

>MS.gene050414.t1

MAPPNSTTVDLIKTESLFDLSEGKFKARGVPLFHDVPENVSFSSFSSICKPSDSNAPPSLLQKVLAFSHKGGFFGFSNETPSDRLMNSLGSFNGKDFVSIFRFKTWWSTQWVGKSGSDLQMETQWILFDIPEIKSYAVIIPIIEKGFRSALFPGSDDHVMIYAESGSTKVKESCFNAIAYVHFSENPYDLMKEAYSVIRVHLNTFRLLEEKTLPNLVDKFGWCTWDAFYLTVNPVGVFHGLEGFSKGGVEPRFVIIDDGWQSISLDGADHNEDAKNLVLGGEQMTGRLRRLGEGDKFKKYESGLLLGPNSPPFNPKTIKELISKGIEHEHLGKQRDQAILSKSSDLAEIESKIKKLIKEIDDLFGGEQSSSVQKSECGSLCCKEKEYGLKAFTRDLRTKFKGLDDVYVWHALCGAWGGVRPGTTHLNTKIVPCKLSPGLDGTMEDLAVVKIVEGSIGLVDPDQANDFYDSMHSYLAESGVTGVKVDVIHCLEYVCDKYGGRVDLAKAYYEGLTKSIAKNFNGNGIIASMQQCNDFFFLGTKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIHCSYNSLWMGQMIRPDWDMFQSDHICAKFHAGSRAICGGPIYLSDNVGSHDFDLIKKLVFPDGTIPKCIHFPLPTRDCLFKNPLFDKTTVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKFRGFPECYKPIVGTVHVTEVEWDQKKEASDLGKAEEYVVYFNQAEELSLMTPKSEPIQFIIQPSTFELYNFVPVTKFGGNIKFAPIGLTNMFNSGGTILDLEYVESGAKIKVKGGGNFLAYSSESPKKFQLNGSEVAFEWLGDGKLTLNVPWIDEAAGVSDLAIFF