Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28957.t1 | XP_003607276.1 | 97.7 | 258 | 4 | 1 | 1 | 258 | 1 | 256 | 1.00E-130 | 476.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28957.t1 | P45434 | 60.4 | 255 | 93 | 2 | 9 | 258 | 6 | 257 | 6.7e-78 | 292.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28957.t1 | G7JPK6 | 97.7 | 258 | 4 | 1 | 1 | 258 | 1 | 256 | 7.5e-131 | 476.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052275 | MS.gene28957 | 0.807825 | 4.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28957.t1 | MTR_4g075340 | 97.674 | 258 | 4 | 1 | 1 | 258 | 1 | 256 | 0.0 | 501 |
| MS.gene28957.t1 | MTR_3g117740 | 74.900 | 251 | 58 | 3 | 1 | 248 | 1 | 249 | 1.44e-125 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28957.t1 | AT2G16595 | 56.466 | 232 | 93 | 3 | 19 | 248 | 17 | 242 | 9.12e-89 | 263 |
| MS.gene28957.t1 | AT2G21160 | 60.581 | 241 | 87 | 2 | 23 | 258 | 20 | 257 | 1.32e-84 | 253 |
| MS.gene28957.t1 | AT2G21160 | 59.412 | 170 | 61 | 2 | 23 | 187 | 20 | 186 | 1.02e-64 | 200 |
Find 59 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTCCTTCAACTCCTTC+TGG | 0.233654 | 4.4:+34747378 | MS.gene28957:CDS |
| AGTTGCCCTCCTTGTCCTCC+TGG | 0.292164 | 4.4:+34749688 | MS.gene28957:CDS |
| TCTGTCTTTCTTGTTACTCT+TGG | 0.333410 | 4.4:+34749665 | MS.gene28957:CDS |
| TGCAGTCAGTAAATTCTTGC+AGG | 0.339537 | 4.4:+34749405 | MS.gene28957:CDS |
| CTCCTGGGGCTATGGATTCA+TGG | 0.339701 | 4.4:+34749704 | MS.gene28957:CDS |
| CTAGTTCCAACTTCAACTTT+AGG | 0.354589 | 4.4:-34750439 | None:intergenic |
| CTTGAATGTTGTTGCAATCA+AGG | 0.356465 | 4.4:+34748733 | MS.gene28957:CDS |
| CCCAAGACTTTGATAGCATT+GGG | 0.358768 | 4.4:+34748283 | MS.gene28957:CDS |
| ACACTTATTGTATCAATTCC+TGG | 0.359626 | 4.4:-34748321 | None:intergenic |
| ATCGCTTCACCGTTCATTCA+AGG | 0.374920 | 4.4:+34747425 | MS.gene28957:CDS |
| TACCAAAGCACCTTCTTTAA+CGG | 0.376523 | 4.4:+34749599 | MS.gene28957:CDS |
| GTTGCCCTCCTTGTCCTCCT+GGG | 0.379518 | 4.4:+34749689 | MS.gene28957:CDS |
| TCCTTGTCCTCCTGGGGCTA+TGG | 0.384359 | 4.4:+34749696 | MS.gene28957:CDS |
| TAGATATTACTACCTTAGAT+AGG | 0.392887 | 4.4:-34749739 | None:intergenic |
| ACTGAAGAAGGAAGTGATAT+TGG | 0.393457 | 4.4:+34748243 | MS.gene28957:CDS |
| TCAAATACAAAACCTATCTA+AGG | 0.403503 | 4.4:+34749727 | MS.gene28957:CDS |
| TTACTGACTGCAAATATGTA+TGG | 0.407567 | 4.4:-34749394 | None:intergenic |
| CCCCAATGCTATCAAAGTCT+TGG | 0.420198 | 4.4:-34748284 | None:intergenic |
| GCCCAAGACTTTGATAGCAT+TGG | 0.431971 | 4.4:+34748282 | MS.gene28957:CDS |
| TGTTCAAAATCTTACTGCTC+AGG | 0.451766 | 4.4:+34748790 | MS.gene28957:CDS |
| TGCCGTTAAAGAAGGTGCTT+TGG | 0.453623 | 4.4:-34749601 | None:intergenic |
| ATTGTATCAATTCCTGGAGC+AGG | 0.479754 | 4.4:-34748315 | None:intergenic |
| GAAAATCCAGAAGGAGTTGA+AGG | 0.482193 | 4.4:-34747384 | None:intergenic |
| ACAAGCAGACGATGATCAAC+AGG | 0.483999 | 4.4:-34748770 | None:intergenic |
| CCCAATGCTATCAAAGTCTT+GGG | 0.484284 | 4.4:-34748283 | None:intergenic |
| TTAAAGAAGGTGCTTTGGTA+TGG | 0.496640 | 4.4:-34749596 | None:intergenic |
| TGAATACAATGCAGTGGTTA+CGG | 0.500104 | 4.4:+34748452 | MS.gene28957:intron |
| AAAGTAGCTTGCGCTGAGGC+TGG | 0.500206 | 4.4:-34749370 | None:intergenic |
| TACAATGCAGTGGTTACGGC+TGG | 0.500546 | 4.4:+34748456 | MS.gene28957:intron |
| GGAAGTGATATTGGCGTCGT+TGG | 0.517650 | 4.4:+34748252 | MS.gene28957:CDS |
| TTCAACAGTGCCGTTAAAGA+AGG | 0.525152 | 4.4:-34749609 | None:intergenic |
| AGGGCTCCTAAAGTTGAAGT+TGG | 0.526588 | 4.4:+34750433 | MS.gene28957:CDS |
| ACTGTTGAAGTTGTTGAAGC+TGG | 0.536900 | 4.4:+34749623 | MS.gene28957:CDS |
| TCCATAGCCCCAGGAGGACA+AGG | 0.542721 | 4.4:-34749697 | None:intergenic |
| TTCAACAGACGAATGGCTAC+AGG | 0.544409 | 4.4:+34750474 | MS.gene28957:CDS |
| TACTGACTGCAAATATGTAT+GGG | 0.546293 | 4.4:-34749393 | None:intergenic |
| GCTAGGTGCCAGTCAGATGA+AGG | 0.552570 | 4.4:+34748207 | MS.gene28957:CDS |
| GATTGCAACAACATTCAAGC+TGG | 0.561649 | 4.4:-34748729 | None:intergenic |
| GACCATGAATCCATAGCCCC+AGG | 0.564710 | 4.4:-34749706 | None:intergenic |
| TTGCCCTCCTTGTCCTCCTG+GGG | 0.570226 | 4.4:+34749690 | MS.gene28957:CDS |
| GTGGATACTACTACTGAAGA+AGG | 0.575203 | 4.4:+34748231 | MS.gene28957:CDS |
| TGATATTGGCGTCGTTGGTG+AGG | 0.582105 | 4.4:+34748257 | MS.gene28957:CDS |
| GAAGACACAGAGCTGCTTGT+GGG | 0.585122 | 4.4:+34748480 | MS.gene28957:CDS |
| TATCCACACCTTCATCTGAC+TGG | 0.588486 | 4.4:-34748215 | None:intergenic |
| AGAAGCAAACCTTGAATGAA+CGG | 0.599882 | 4.4:-34747434 | None:intergenic |
| GAAGGAGTTGAAGGAAGCCA+TGG | 0.615324 | 4.4:-34747375 | None:intergenic |
| CCGACAAGATCAAAACTCCC+AGG | 0.627060 | 4.4:-34749545 | None:intergenic |
| CAGATGCTTCAACAGACGAA+TGG | 0.628599 | 4.4:+34750467 | MS.gene28957:CDS |
| AGAAGACACAGAGCTGCTTG+TGG | 0.639497 | 4.4:+34748479 | MS.gene28957:CDS |
| TAGCCCCAGGAGGACAAGGA+GGG | 0.644555 | 4.4:-34749693 | None:intergenic |
| GTTGAAGTTGTTGAAGCTGG+TGG | 0.646915 | 4.4:+34749626 | MS.gene28957:CDS |
| GTGCCAGTCAGATGAAGGTG+TGG | 0.647403 | 4.4:+34748212 | MS.gene28957:CDS |
| GAATGAACGGTGAAGCGATG+AGG | 0.649425 | 4.4:-34747421 | None:intergenic |
| AGCGAGAGAGAAAATCCAGA+AGG | 0.652741 | 4.4:-34747393 | None:intergenic |
| CCAAGACTTTGATAGCATTG+GGG | 0.668986 | 4.4:+34748284 | MS.gene28957:CDS |
| ATAGCCCCAGGAGGACAAGG+AGG | 0.677509 | 4.4:-34749694 | None:intergenic |
| GCAGACGATGATCAACAGGA+AGG | 0.726473 | 4.4:-34748766 | None:intergenic |
| CATGAATCCATAGCCCCAGG+AGG | 0.732654 | 4.4:-34749703 | None:intergenic |
| TGGGAAAGTAGCTTGCGCTG+AGG | 0.756303 | 4.4:-34749374 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTGGTTTTTTATTTT+GGG | + | chr4.4:34747608-34747627 | MS.gene28957:intron | 10.0% |
| !!! | TAAAAATTGGTTTTTTATTT+TGG | + | chr4.4:34747607-34747626 | MS.gene28957:intron | 10.0% |
| !!! | TATTTTATTTTTTGATCAAA+GGG | + | chr4.4:34747758-34747777 | MS.gene28957:intron | 10.0% |
| !!! | TTATTTTATTTTTTGATCAA+AGG | + | chr4.4:34747757-34747776 | MS.gene28957:intron | 10.0% |
| !! | AAAAATAAAAAAGAAGCAAT+TGG | - | chr4.4:34747540-34747559 | None:intergenic | 15.0% |
| !! | AAAATAAAAAAGAAGCAATT+GGG | - | chr4.4:34747539-34747558 | None:intergenic | 15.0% |
| !! | AAAATAGAAAATATTTCACA+AGG | - | chr4.4:34749912-34749931 | None:intergenic | 15.0% |
| !! | AAAGAATGTAAAAAAAGAAA+AGG | - | chr4.4:34748623-34748642 | None:intergenic | 15.0% |
| !! | GTATTCAATTTACAAAATTA+AGG | + | chr4.4:34749877-34749896 | MS.gene28957:intron | 15.0% |
| !! | TATATTATCTCTATACTTAT+TGG | + | chr4.4:34750515-34750534 | MS.gene28957:intron | 15.0% |
| !!! | AAAAAATTTTGCAAAATGTA+AGG | + | chr4.4:34748350-34748369 | MS.gene28957:intron | 15.0% |
| !!! | AAAATTGGTTTTTTATTTTG+GGG | + | chr4.4:34747609-34747628 | MS.gene28957:intron | 15.0% |
| !!! | AAAGATCACATTTTTAATAT+TGG | + | chr4.4:34747727-34747746 | MS.gene28957:intron | 15.0% |
| !!! | AAGATCACATTTTTAATATT+GGG | + | chr4.4:34747728-34747747 | MS.gene28957:intron | 15.0% |
| !!! | CTTTTAATATAGATTTCAAA+TGG | + | chr4.4:34747893-34747912 | MS.gene28957:intron | 15.0% |
| !!! | TATTTTGATCTATTTTTGAA+AGG | + | chr4.4:34747838-34747857 | MS.gene28957:intron | 15.0% |
| !!! | TTACATTTTGCAAAATTTTT+TGG | - | chr4.4:34748351-34748370 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTTACATTCTTTT+TGG | + | chr4.4:34748624-34748643 | MS.gene28957:intron | 15.0% |
| !!! | TTTTTTTTTTACAGTAAACA+GGG | + | chr4.4:34750141-34750160 | MS.gene28957:intron | 15.0% |
| !!! | TTTTTTTTTTTACAGTAAAC+AGG | + | chr4.4:34750140-34750159 | MS.gene28957:intron | 15.0% |
| !! | ATGAACATCTAAATTAAACT+TGG | + | chr4.4:34748826-34748845 | MS.gene28957:intron | 20.0% |
| !! | TCAAATAATAGCAAATTATC+TGG | - | chr4.4:34749777-34749796 | None:intergenic | 20.0% |
| !!! | ATTTTATCAGAAAACAAAGA+GGG | + | chr4.4:34750414-34750433 | MS.gene28957:intron | 20.0% |
| !!! | GATAATTTGCTATTATTTGA+CGG | + | chr4.4:34749777-34749796 | MS.gene28957:intron | 20.0% |
| !!! | TAAATCTGTATCTTTTTAGA+TGG | + | chr4.4:34748054-34748073 | MS.gene28957:intron | 20.0% |
| !!! | TATTTTATCAGAAAACAAAG+AGG | + | chr4.4:34750413-34750432 | MS.gene28957:intron | 20.0% |
| !!! | TTTGCTAATTTTTCTCATAA+TGG | + | chr4.4:34749815-34749834 | MS.gene28957:intron | 20.0% |
| ! | AAATATTTCACAAGGTAAAC+AGG | - | chr4.4:34749904-34749923 | None:intergenic | 25.0% |
| ! | AATATTTCACAAGGTAAACA+GGG | - | chr4.4:34749903-34749922 | None:intergenic | 25.0% |
| ! | AATGGAATTCCTAATTTAAG+TGG | + | chr4.4:34747911-34747930 | MS.gene28957:intron | 25.0% |
| ! | ATATATCCTAGCAAAATCTT+TGG | - | chr4.4:34749168-34749187 | None:intergenic | 25.0% |
| ! | ATATGAAAAACTGAACAACA+TGG | - | chr4.4:34750544-34750563 | None:intergenic | 25.0% |
| ! | ATTCAATCATATTGGATACT+TGG | + | chr4.4:34748520-34748539 | MS.gene28957:intron | 25.0% |
| ! | CAAATGGATCATAGATAAAA+CGG | - | chr4.4:34747479-34747498 | None:intergenic | 25.0% |
| ! | GATGAAGGAAATATTAAAGA+CGG | - | chr4.4:34750362-34750381 | None:intergenic | 25.0% |
| ! | TAACGGTAATTCAATCATAT+TGG | + | chr4.4:34748512-34748531 | MS.gene28957:intron | 25.0% |
| ! | TAACTTCAAACTAGTAATGT+AGG | - | chr4.4:34747697-34747716 | None:intergenic | 25.0% |
| ! | TAGATATTACTACCTTAGAT+AGG | - | chr4.4:34749742-34749761 | None:intergenic | 25.0% |
| ! | TATTTGCAACCACTTAAATT+AGG | - | chr4.4:34747923-34747942 | None:intergenic | 25.0% |
| ! | TCAAATACAAAACCTATCTA+AGG | + | chr4.4:34749727-34749746 | MS.gene28957:CDS | 25.0% |
| ! | TTAGCAAATTCAAAATGTGA+AGG | - | chr4.4:34749803-34749822 | None:intergenic | 25.0% |
| ! | TTATTTCATGTGCTAATAAC+AGG | + | chr4.4:34748701-34748720 | MS.gene28957:intron | 25.0% |
| !!! | GAACAAATATGTGCATTTTT+TGG | + | chr4.4:34749998-34750017 | MS.gene28957:intron | 25.0% |
| !!! | TTTTCTCATAATGGTTTGTT+TGG | + | chr4.4:34749824-34749843 | MS.gene28957:intron | 25.0% |
| AAATCAAACGTCAGAAGTTT+AGG | - | chr4.4:34750284-34750303 | None:intergenic | 30.0% | |
| AAATTCCCGTTTCGTATAAA+TGG | - | chr4.4:34748903-34748922 | None:intergenic | 30.0% | |
| AATCAAACGTCAGAAGTTTA+GGG | - | chr4.4:34750283-34750302 | None:intergenic | 30.0% | |
| ACACTTATTGTATCAATTCC+TGG | - | chr4.4:34748324-34748343 | None:intergenic | 30.0% | |
| CATTTCTTGTGAAGGAAATA+CGG | + | chr4.4:34749234-34749253 | MS.gene28957:intron | 30.0% | |
| CTTGTGGGTGTAAAAAATAA+CGG | + | chr4.4:34748495-34748514 | MS.gene28957:CDS | 30.0% | |
| GAAGATTAAGATTGACTACA+AGG | - | chr4.4:34748859-34748878 | None:intergenic | 30.0% | |
| GAGATCAATGAGTATATGTA+TGG | - | chr4.4:34749495-34749514 | None:intergenic | 30.0% | |
| TAAAAAAGAAGCAATTGGGT+CGG | - | chr4.4:34747535-34747554 | None:intergenic | 30.0% | |
| TAAACTTCTGACGTTTGATT+TGG | + | chr4.4:34750283-34750302 | MS.gene28957:intron | 30.0% | |
| TGAAAGCCATTTATACGAAA+CGG | + | chr4.4:34748894-34748913 | MS.gene28957:intron | 30.0% | |
| TTTGCTAGGATATATGATGT+CGG | + | chr4.4:34749173-34749192 | MS.gene28957:intron | 30.0% | |
| TTTGTATGAATACAATGCAG+TGG | + | chr4.4:34748446-34748465 | MS.gene28957:intron | 30.0% | |
| ! | AAACGTTTTCCAATACCAAA+AGG | + | chr4.4:34750257-34750276 | MS.gene28957:intron | 30.0% |
| ! | TACTGACTGCAAATATGTAT+GGG | - | chr4.4:34749396-34749415 | None:intergenic | 30.0% |
| ! | TATTGTGTACTGTCATTTAC+TGG | - | chr4.4:34749295-34749314 | None:intergenic | 30.0% |
| ! | TGATTTTGCATTTCTTGTGA+AGG | + | chr4.4:34749226-34749245 | MS.gene28957:intron | 30.0% |
| ! | TGCAATCTAATGCTCATTTT+TGG | - | chr4.4:34749116-34749135 | None:intergenic | 30.0% |
| ! | TTACTGACTGCAAATATGTA+TGG | - | chr4.4:34749397-34749416 | None:intergenic | 30.0% |
| ! | TTTTTATGCTATGTGCATGA+TGG | + | chr4.4:34748152-34748171 | MS.gene28957:intron | 30.0% |
| !! | TTTTACATTTGCTAGTTGCT+AGG | + | chr4.4:34748190-34748209 | MS.gene28957:intron | 30.0% |
| !! | TTTTCTTTAAAAGCACAAGC+TGG | - | chr4.4:34750323-34750342 | None:intergenic | 30.0% |
| !!! | ACTTTTTTCTTTCTGATTGC+AGG | + | chr4.4:34749327-34749346 | MS.gene28957:intron | 30.0% |
| ACATATAGAACTCCTTCAGA+TGG | - | chr4.4:34749199-34749218 | None:intergenic | 35.0% | |
| ACTGAAGAAGGAAGTGATAT+TGG | + | chr4.4:34748243-34748262 | MS.gene28957:CDS | 35.0% | |
| ACTGAGGTAGAGTTATTTGA+AGG | + | chr4.4:34747942-34747961 | MS.gene28957:intron | 35.0% | |
| AGAAGATGAAATGCTAGCTA+GGG | - | chr4.4:34750043-34750062 | None:intergenic | 35.0% | |
| AGAAGCAAACCTTGAATGAA+CGG | - | chr4.4:34747437-34747456 | None:intergenic | 35.0% | |
| CTAGTTCCAACTTCAACTTT+AGG | - | chr4.4:34750442-34750461 | None:intergenic | 35.0% | |
| CTTGAATGTTGTTGCAATCA+AGG | + | chr4.4:34748733-34748752 | MS.gene28957:CDS | 35.0% | |
| GAAAGCCATTTATACGAAAC+GGG | + | chr4.4:34748895-34748914 | MS.gene28957:intron | 35.0% | |
| GAAGGAAATATTAAAGACGG+AGG | - | chr4.4:34750359-34750378 | None:intergenic | 35.0% | |
| GATATTTCGTTTCAGATGTC+TGG | - | chr4.4:34750585-34750604 | None:intergenic | 35.0% | |
| GCATTGTTTAATCTTGTGCA+TGG | + | chr4.4:34747780-34747799 | MS.gene28957:intron | 35.0% | |
| GTATATTGTGTTCCCTTGAA+AGG | + | chr4.4:34748962-34748981 | MS.gene28957:intron | 35.0% | |
| TCTGTCTTTCTTGTTACTCT+TGG | + | chr4.4:34749665-34749684 | MS.gene28957:CDS | 35.0% | |
| TGAATACAATGCAGTGGTTA+CGG | + | chr4.4:34748452-34748471 | MS.gene28957:intron | 35.0% | |
| TGTTCAAAATCTTACTGCTC+AGG | + | chr4.4:34748790-34748809 | MS.gene28957:CDS | 35.0% | |
| TTAAGTGGTTGCAAATACTG+AGG | + | chr4.4:34747926-34747945 | MS.gene28957:intron | 35.0% | |
| TTTGCATGCATTGTGATCTT+TGG | + | chr4.4:34747558-34747577 | MS.gene28957:intron | 35.0% | |
| ! | AAGTAGCCAAAGATTTTGCT+AGG | + | chr4.4:34749159-34749178 | MS.gene28957:intron | 35.0% |
| ! | AGATGTCTGGTTTATGCTAT+AGG | - | chr4.4:34750572-34750591 | None:intergenic | 35.0% |
| ! | AGTAATTTGCAAAATCCGAC+AGG | - | chr4.4:34748121-34748140 | None:intergenic | 35.0% |
| ! | GAGGATTTGAAATTACTCCA+AGG | - | chr4.4:34748990-34749009 | None:intergenic | 35.0% |
| ! | GGTTTGTTTGGTTTATGAAG+AGG | + | chr4.4:34749836-34749855 | MS.gene28957:intron | 35.0% |
| ! | GTAATTTGCAAAATCCGACA+GGG | - | chr4.4:34748120-34748139 | None:intergenic | 35.0% |
| ! | TACCAAAGCACCTTCTTTAA+CGG | + | chr4.4:34749599-34749618 | MS.gene28957:CDS | 35.0% |
| ! | TGATTGCAGGTTTTCAACAA+TGG | + | chr4.4:34749340-34749359 | MS.gene28957:intron | 35.0% |
| !! | TGCATGATGGTTTTTGATTG+TGG | + | chr4.4:34748165-34748184 | MS.gene28957:intron | 35.0% |
| !! | TTAAAGAAGGTGCTTTGGTA+TGG | - | chr4.4:34749599-34749618 | None:intergenic | 35.0% |
| !!! | GGGGTATTTTGATCTTTGTT+GGG | + | chr4.4:34747628-34747647 | MS.gene28957:intron | 35.0% |
| !!! | TAATGCTCATTTTTGGCACA+GGG | - | chr4.4:34749109-34749128 | None:intergenic | 35.0% |
| !!! | TGGGGTATTTTGATCTTTGT+TGG | + | chr4.4:34747627-34747646 | MS.gene28957:intron | 35.0% |
| !!! | TGTTATTTTACTTGCCCTGT+CGG | + | chr4.4:34748103-34748122 | MS.gene28957:intron | 35.0% |
| AAAGCTTGAAATCACAGTGC+TGG | - | chr4.4:34748551-34748570 | None:intergenic | 40.0% | |
| AATGTAAGGATCGTTCTGTC+TGG | + | chr4.4:34748364-34748383 | MS.gene28957:intron | 40.0% | |
| ACTAAAAGCAGTTGCCTTCA+AGG | - | chr4.4:34749442-34749461 | None:intergenic | 40.0% | |
| ACTGTTGAAGTTGTTGAAGC+TGG | + | chr4.4:34749623-34749642 | MS.gene28957:CDS | 40.0% | |
| AGCAAACACGAGAATATCAG+AGG | - | chr4.4:34750385-34750404 | None:intergenic | 40.0% | |
| ATTGTATCAATTCCTGGAGC+AGG | - | chr4.4:34748318-34748337 | None:intergenic | 40.0% | |
| CAAACTAGTAATGTAGGTGC+AGG | - | chr4.4:34747691-34747710 | None:intergenic | 40.0% | |
| CATGCAGAAAACGAAGCAAA+TGG | - | chr4.4:34747495-34747514 | None:intergenic | 40.0% | |
| CCCAATGCTATCAAAGTCTT+GGG | - | chr4.4:34748286-34748305 | None:intergenic | 40.0% | |
| CTTACTGCTCAGGTAGTAAT+TGG | + | chr4.4:34748800-34748819 | MS.gene28957:intron | 40.0% | |
| GAAAATCCAGAAGGAGTTGA+AGG | - | chr4.4:34747387-34747406 | None:intergenic | 40.0% | |
| GAGAAGATGAAATGCTAGCT+AGG | - | chr4.4:34750044-34750063 | None:intergenic | 40.0% | |
| GATCTACACGTGACAAAGAT+TGG | + | chr4.4:34749015-34749034 | MS.gene28957:intron | 40.0% | |
| GATTGCAACAACATTCAAGC+TGG | - | chr4.4:34748732-34748751 | None:intergenic | 40.0% | |
| GCAAACACGAGAATATCAGA+GGG | - | chr4.4:34750384-34750403 | None:intergenic | 40.0% | |
| GTCATTTACTGGATCAGAAC+AGG | - | chr4.4:34749284-34749303 | None:intergenic | 40.0% | |
| GTGGATACTACTACTGAAGA+AGG | + | chr4.4:34748231-34748250 | MS.gene28957:CDS | 40.0% | |
| TAAAAGCCATCTCCTACAGA+TGG | - | chr4.4:34749049-34749068 | None:intergenic | 40.0% | |
| TCATCTTCTCTCGATCACAA+TGG | + | chr4.4:34750054-34750073 | MS.gene28957:intron | 40.0% | |
| TGCAGTCAGTAAATTCTTGC+AGG | + | chr4.4:34749405-34749424 | MS.gene28957:CDS | 40.0% | |
| TGGAAGCTTGATTCAGCATT+TGG | + | chr4.4:34748074-34748093 | MS.gene28957:intron | 40.0% | |
| TTACTATCCAACCTCTTTCC+AGG | - | chr4.4:34748934-34748953 | None:intergenic | 40.0% | |
| TTGCCTTGTATTGTCATCCA+GGG | + | chr4.4:34750610-34750629 | MS.gene28957:intron | 40.0% | |
| TTTCAAATCCTCCTGGAAAG+AGG | + | chr4.4:34748920-34748939 | MS.gene28957:intron | 40.0% | |
| TTTGCCTTGTATTGTCATCC+AGG | + | chr4.4:34750609-34750628 | MS.gene28957:intron | 40.0% | |
| TTTGTCACGTGTAGATCAAC+AGG | - | chr4.4:34749012-34749031 | None:intergenic | 40.0% | |
| ! | AGGTATTGCCATTACCTTGA+AGG | + | chr4.4:34749425-34749444 | MS.gene28957:intron | 40.0% |
| ! | CCAAGACTTTGATAGCATTG+GGG | + | chr4.4:34748284-34748303 | MS.gene28957:CDS | 40.0% |
| ! | CCCAAGACTTTGATAGCATT+GGG | + | chr4.4:34748283-34748302 | MS.gene28957:CDS | 40.0% |
| ! | TACTCCAAGGTACCTTTCAA+GGG | - | chr4.4:34748977-34748996 | None:intergenic | 40.0% |
| ! | TTACTCCAAGGTACCTTTCA+AGG | - | chr4.4:34748978-34748997 | None:intergenic | 40.0% |
| ! | TTCAACAGTGCCGTTAAAGA+AGG | - | chr4.4:34749612-34749631 | None:intergenic | 40.0% |
| !! | AGTTTAGGGCCTTTTGGTAT+TGG | - | chr4.4:34750269-34750288 | None:intergenic | 40.0% |
| !!! | CTAATGCTCATTTTTGGCAC+AGG | - | chr4.4:34749110-34749129 | None:intergenic | 40.0% |
| AAATCCTCCTGGAAAGAGGT+TGG | + | chr4.4:34748924-34748943 | MS.gene28957:intron | 45.0% | |
| ACAAGCAGACGATGATCAAC+AGG | - | chr4.4:34748773-34748792 | None:intergenic | 45.0% | |
| ACGGGAATTTCAAATCCTCC+TGG | + | chr4.4:34748913-34748932 | MS.gene28957:intron | 45.0% | |
| ACTGAGTATATGCAGTTCCC+TGG | - | chr4.4:34750630-34750649 | None:intergenic | 45.0% | |
| AGCAGTTGCCTTCAAGGTAA+TGG | - | chr4.4:34749436-34749455 | None:intergenic | 45.0% | |
| AGCGAGAGAGAAAATCCAGA+AGG | - | chr4.4:34747396-34747415 | None:intergenic | 45.0% | |
| AGGGCTCCTAAAGTTGAAGT+TGG | + | chr4.4:34750433-34750452 | MS.gene28957:CDS | 45.0% | |
| ATATGATGTCGGCCATCTGA+AGG | + | chr4.4:34749184-34749203 | MS.gene28957:intron | 45.0% | |
| ATCGCTTCACCGTTCATTCA+AGG | + | chr4.4:34747425-34747444 | MS.gene28957:CDS | 45.0% | |
| CAGATGCTTCAACAGACGAA+TGG | + | chr4.4:34750467-34750486 | MS.gene28957:CDS | 45.0% | |
| CCCCAATGCTATCAAAGTCT+TGG | - | chr4.4:34748287-34748306 | None:intergenic | 45.0% | |
| CGAAGCCAAGAGTCAAATCA+GGG | + | chr4.4:34748647-34748666 | MS.gene28957:intron | 45.0% | |
| CGAGAATATCAGAGGGATGA+AGG | - | chr4.4:34750377-34750396 | None:intergenic | 45.0% | |
| GTTCCCTGGATGACAATACA+AGG | - | chr4.4:34750616-34750635 | None:intergenic | 45.0% | |
| GTTGAAGTTGTTGAAGCTGG+TGG | + | chr4.4:34749626-34749645 | MS.gene28957:CDS | 45.0% | |
| TACTTGCCATCTGTAGGAGA+TGG | + | chr4.4:34749040-34749059 | MS.gene28957:intron | 45.0% | |
| TATCCACACCTTCATCTGAC+TGG | - | chr4.4:34748218-34748237 | None:intergenic | 45.0% | |
| TTCAACAGACGAATGGCTAC+AGG | + | chr4.4:34750474-34750493 | MS.gene28957:CDS | 45.0% | |
| TTGAAGGAACGACGACAACA+TGG | + | chr4.4:34747958-34747977 | MS.gene28957:intron | 45.0% | |
| TTGGTCTACTTGCCATCTGT+AGG | + | chr4.4:34749034-34749053 | MS.gene28957:intron | 45.0% | |
| ! | AGAGACCCTGATTTGACTCT+TGG | - | chr4.4:34748655-34748674 | None:intergenic | 45.0% |
| ! | GCCCAAGACTTTGATAGCAT+TGG | + | chr4.4:34748282-34748301 | MS.gene28957:CDS | 45.0% |
| !! | CCTGGGAGTTTTGATCTTGT+CGG | + | chr4.4:34749545-34749564 | MS.gene28957:CDS | 45.0% |
| !! | GTCAGAAGTTTAGGGCCTTT+TGG | - | chr4.4:34750275-34750294 | None:intergenic | 45.0% |
| !! | TCTGACGTTTGATTTGGTCC+TGG | + | chr4.4:34750289-34750308 | MS.gene28957:intron | 45.0% |
| !! | TGCCGTTAAAGAAGGTGCTT+TGG | - | chr4.4:34749604-34749623 | None:intergenic | 45.0% |
| !! | TGTTCCCTTGAAAGGTACCT+TGG | + | chr4.4:34748970-34748989 | MS.gene28957:intron | 45.0% |
| !!! | TTATAATTTGTATTAAAAAT+TGG | + | chr4.4:34747594-34747613 | MS.gene28957:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+AGG | + | chr4.4:34747812-34747831 | MS.gene28957:intron | 5.0% |
| AGAAGACACAGAGCTGCTTG+TGG | + | chr4.4:34748479-34748498 | MS.gene28957:CDS | 50.0% | |
| CACAAGCTGGAGCAATAACC+AGG | - | chr4.4:34750310-34750329 | None:intergenic | 50.0% | |
| CAGACGAATGGCTACAGGTA+TGG | + | chr4.4:34750479-34750498 | MS.gene28957:intron | 50.0% | |
| CCGACAAGATCAAAACTCCC+AGG | - | chr4.4:34749548-34749567 | None:intergenic | 50.0% | |
| CTATCCAACCTCTTTCCAGG+AGG | - | chr4.4:34748931-34748950 | None:intergenic | 50.0% | |
| GAAGACACAGAGCTGCTTGT+GGG | + | chr4.4:34748480-34748499 | MS.gene28957:CDS | 50.0% | |
| GAATGAACGGTGAAGCGATG+AGG | - | chr4.4:34747424-34747443 | None:intergenic | 50.0% | |
| GCAGACGATGATCAACAGGA+AGG | - | chr4.4:34748769-34748788 | None:intergenic | 50.0% | |
| GCGAAGCCAAGAGTCAAATC+AGG | + | chr4.4:34748646-34748665 | MS.gene28957:intron | 50.0% | |
| GGAAGTGATATTGGCGTCGT+TGG | + | chr4.4:34748252-34748271 | MS.gene28957:CDS | 50.0% | |
| GTCACGTGTAGATCAACAGG+AGG | - | chr4.4:34749009-34749028 | None:intergenic | 50.0% | |
| TACAATGCAGTGGTTACGGC+TGG | + | chr4.4:34748456-34748475 | MS.gene28957:intron | 50.0% | |
| TGATATTGGCGTCGTTGGTG+AGG | + | chr4.4:34748257-34748276 | MS.gene28957:CDS | 50.0% | |
| TGGCTTCCTTCAACTCCTTC+TGG | + | chr4.4:34747378-34747397 | MS.gene28957:CDS | 50.0% | |
| TTTGGCACAGGGCAGTAACT+GGG | - | chr4.4:34749098-34749117 | None:intergenic | 50.0% | |
| ! | GATTTTTCCGTGTGCAGCCT+GGG | + | chr4.4:34749528-34749547 | MS.gene28957:intron | 50.0% |
| ! | TGATTTTTCCGTGTGCAGCC+TGG | + | chr4.4:34749527-34749546 | MS.gene28957:intron | 50.0% |
| ! | TTTTGGCACAGGGCAGTAAC+TGG | - | chr4.4:34749099-34749118 | None:intergenic | 50.0% |
| CAAAACTCCCAGGCTGCACA+CGG | - | chr4.4:34749538-34749557 | None:intergenic | 55.0% | |
| CATGAATCCATAGCCCCAGG+AGG | - | chr4.4:34749706-34749725 | None:intergenic | 55.0% | |
| CTCCTGGGGCTATGGATTCA+TGG | + | chr4.4:34749704-34749723 | MS.gene28957:CDS | 55.0% | |
| GACCATGAATCCATAGCCCC+AGG | - | chr4.4:34749709-34749728 | None:intergenic | 55.0% | |
| GCTAGGTGCCAGTCAGATGA+AGG | + | chr4.4:34748207-34748226 | MS.gene28957:CDS | 55.0% | |
| GTGCCAGTCAGATGAAGGTG+TGG | + | chr4.4:34748212-34748231 | MS.gene28957:CDS | 55.0% | |
| ! | AAAGTAGCTTGCGCTGAGGC+TGG | - | chr4.4:34749373-34749392 | None:intergenic | 55.0% |
| ! | TGGGAAAGTAGCTTGCGCTG+AGG | - | chr4.4:34749377-34749396 | None:intergenic | 55.0% |
| AGTTGCCCTCCTTGTCCTCC+TGG | + | chr4.4:34749688-34749707 | MS.gene28957:CDS | 60.0% | |
| ATAGCCCCAGGAGGACAAGG+AGG | - | chr4.4:34749697-34749716 | None:intergenic | 60.0% | |
| GTTGCCCTCCTTGTCCTCCT+GGG | + | chr4.4:34749689-34749708 | MS.gene28957:CDS | 60.0% | |
| TAGCCCCAGGAGGACAAGGA+GGG | - | chr4.4:34749696-34749715 | None:intergenic | 60.0% | |
| TCCATAGCCCCAGGAGGACA+AGG | - | chr4.4:34749700-34749719 | None:intergenic | 60.0% | |
| TCCTTGTCCTCCTGGGGCTA+TGG | + | chr4.4:34749696-34749715 | MS.gene28957:CDS | 60.0% | |
| TTGCCCTCCTTGTCCTCCTG+GGG | + | chr4.4:34749690-34749709 | MS.gene28957:CDS | 60.0% | |
| ! | GGGGACTTTTCTCCTGCTCC+AGG | + | chr4.4:34748303-34748322 | MS.gene28957:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34747377 | 34750681 | 34747377 | ID=MS.gene28957 |
| chr4.4 | mRNA | 34747377 | 34750681 | 34747377 | ID=MS.gene28957.t1;Parent=MS.gene28957 |
| chr4.4 | exon | 34747377 | 34747446 | 34747377 | ID=MS.gene28957.t1.exon1;Parent=MS.gene28957.t1 |
| chr4.4 | CDS | 34747377 | 34747446 | 34747377 | ID=cds.MS.gene28957.t1;Parent=MS.gene28957.t1 |
| chr4.4 | exon | 34748205 | 34748366 | 34748205 | ID=MS.gene28957.t1.exon2;Parent=MS.gene28957.t1 |
| chr4.4 | CDS | 34748205 | 34748366 | 34748205 | ID=cds.MS.gene28957.t1;Parent=MS.gene28957.t1 |
| chr4.4 | exon | 34748466 | 34748516 | 34748466 | ID=MS.gene28957.t1.exon3;Parent=MS.gene28957.t1 |
| chr4.4 | CDS | 34748466 | 34748516 | 34748466 | ID=cds.MS.gene28957.t1;Parent=MS.gene28957.t1 |
| chr4.4 | exon | 34748723 | 34748811 | 34748723 | ID=MS.gene28957.t1.exon4;Parent=MS.gene28957.t1 |
| chr4.4 | CDS | 34748723 | 34748811 | 34748723 | ID=cds.MS.gene28957.t1;Parent=MS.gene28957.t1 |
| chr4.4 | exon | 34749349 | 34749426 | 34749349 | ID=MS.gene28957.t1.exon5;Parent=MS.gene28957.t1 |
| chr4.4 | CDS | 34749349 | 34749426 | 34749349 | ID=cds.MS.gene28957.t1;Parent=MS.gene28957.t1 |
| chr4.4 | exon | 34749545 | 34749748 | 34749545 | ID=MS.gene28957.t1.exon6;Parent=MS.gene28957.t1 |
| chr4.4 | CDS | 34749545 | 34749748 | 34749545 | ID=cds.MS.gene28957.t1;Parent=MS.gene28957.t1 |
| chr4.4 | exon | 34750424 | 34750495 | 34750424 | ID=MS.gene28957.t1.exon7;Parent=MS.gene28957.t1 |
| chr4.4 | CDS | 34750424 | 34750495 | 34750424 | ID=cds.MS.gene28957.t1;Parent=MS.gene28957.t1 |
| chr4.4 | exon | 34750631 | 34750681 | 34750631 | ID=MS.gene28957.t1.exon8;Parent=MS.gene28957.t1 |
| chr4.4 | CDS | 34750631 | 34750681 | 34750631 | ID=cds.MS.gene28957.t1;Parent=MS.gene28957.t1 |
| Gene Sequence |
| Protein sequence |
