Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29067.t1 | XP_013460986.1 | 99.3 | 409 | 3 | 0 | 1 | 409 | 1 | 409 | 3.70E-234 | 820.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29067.t1 | Q9LY87 | 73.5 | 362 | 84 | 5 | 57 | 409 | 84 | 442 | 1.3e-147 | 524.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29067.t1 | A0A072VA09 | 99.3 | 409 | 3 | 0 | 1 | 409 | 1 | 409 | 2.7e-234 | 820.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058535 | MS.gene29067 | 0.840062 | 1.09E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29067.t1 | MTR_3g075530 | 99.024 | 410 | 4 | 0 | 1 | 410 | 1 | 410 | 0.0 | 849 |
| MS.gene29067.t1 | MTR_8g089670 | 63.341 | 431 | 130 | 6 | 1 | 410 | 27 | 450 | 0.0 | 527 |
| MS.gene29067.t1 | MTR_3g086520 | 67.089 | 395 | 112 | 6 | 22 | 410 | 60 | 442 | 0.0 | 518 |
| MS.gene29067.t1 | MTR_3g086520 | 67.089 | 395 | 112 | 6 | 22 | 410 | 63 | 445 | 0.0 | 517 |
| MS.gene29067.t1 | MTR_3g086520 | 67.089 | 395 | 112 | 6 | 22 | 410 | 63 | 445 | 0.0 | 517 |
| MS.gene29067.t1 | MTR_6g021730 | 64.394 | 396 | 114 | 4 | 41 | 410 | 67 | 461 | 0.0 | 513 |
| MS.gene29067.t1 | MTR_7g033100 | 60.185 | 432 | 138 | 7 | 1 | 410 | 1 | 420 | 6.52e-174 | 494 |
| MS.gene29067.t1 | MTR_7g033100 | 58.981 | 412 | 135 | 7 | 1 | 390 | 1 | 400 | 1.06e-158 | 454 |
| MS.gene29067.t1 | MTR_3g096520 | 60.556 | 360 | 123 | 3 | 66 | 421 | 79 | 423 | 8.05e-155 | 445 |
| MS.gene29067.t1 | MTR_3g096520 | 60.556 | 360 | 123 | 3 | 66 | 421 | 96 | 440 | 2.24e-154 | 444 |
| MS.gene29067.t1 | MTR_3g096520 | 60.000 | 360 | 124 | 3 | 66 | 421 | 79 | 422 | 8.76e-154 | 442 |
| MS.gene29067.t1 | MTR_2g063857 | 59.066 | 364 | 127 | 4 | 59 | 421 | 59 | 401 | 9.10e-149 | 429 |
| MS.gene29067.t1 | MTR_6g092020 | 56.085 | 378 | 141 | 5 | 45 | 421 | 27 | 380 | 1.37e-143 | 415 |
| MS.gene29067.t1 | MTR_2g063843 | 55.065 | 385 | 128 | 7 | 45 | 421 | 40 | 387 | 4.64e-141 | 409 |
| MS.gene29067.t1 | MTR_2g063907 | 58.239 | 352 | 114 | 4 | 62 | 408 | 48 | 371 | 2.15e-139 | 405 |
| MS.gene29067.t1 | MTR_2g063857 | 65.517 | 290 | 99 | 1 | 59 | 348 | 59 | 347 | 4.02e-137 | 398 |
| MS.gene29067.t1 | MTR_8g447220 | 53.023 | 430 | 154 | 11 | 1 | 421 | 1 | 391 | 8.29e-136 | 395 |
| MS.gene29067.t1 | MTR_6g092100 | 65.480 | 281 | 94 | 2 | 68 | 348 | 2 | 279 | 1.26e-131 | 381 |
| MS.gene29067.t1 | MTR_8g447220 | 58.333 | 336 | 117 | 4 | 1 | 332 | 1 | 317 | 1.79e-126 | 369 |
| MS.gene29067.t1 | MTR_7g081160 | 61.847 | 249 | 90 | 3 | 88 | 332 | 7 | 254 | 1.43e-95 | 296 |
| MS.gene29067.t1 | MTR_7g081170 | 69.375 | 160 | 45 | 2 | 127 | 285 | 86 | 242 | 5.04e-76 | 237 |
| MS.gene29067.t1 | MTR_5g094020 | 69.565 | 92 | 20 | 1 | 324 | 415 | 2 | 85 | 4.78e-35 | 125 |
| MS.gene29067.t1 | MTR_2g063877 | 52.727 | 110 | 39 | 3 | 148 | 257 | 4 | 100 | 2.28e-29 | 112 |
| MS.gene29067.t1 | MTR_8g096190 | 33.219 | 292 | 148 | 11 | 55 | 326 | 306 | 570 | 1.48e-24 | 106 |
| MS.gene29067.t1 | MTR_8g096190 | 34.340 | 265 | 134 | 10 | 55 | 299 | 306 | 550 | 1.24e-23 | 103 |
| MS.gene29067.t1 | MTR_8g096190 | 35.897 | 234 | 119 | 9 | 55 | 277 | 306 | 519 | 2.50e-23 | 102 |
| MS.gene29067.t1 | MTR_1g048160 | 29.730 | 259 | 138 | 8 | 88 | 326 | 328 | 562 | 3.68e-20 | 93.2 |
| MS.gene29067.t1 | MTR_7g114130 | 29.286 | 280 | 149 | 10 | 87 | 346 | 331 | 581 | 4.37e-20 | 93.2 |
| MS.gene29067.t1 | MTR_7g114100 | 30.350 | 257 | 128 | 12 | 88 | 322 | 166 | 393 | 4.97e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29067.t1 | AT5G14420 | 72.922 | 373 | 84 | 6 | 47 | 410 | 79 | 443 | 0.0 | 537 |
| MS.gene29067.t1 | AT5G14420 | 72.922 | 373 | 84 | 6 | 47 | 410 | 79 | 443 | 0.0 | 537 |
| MS.gene29067.t1 | AT5G14420 | 72.922 | 373 | 84 | 6 | 47 | 410 | 79 | 443 | 0.0 | 537 |
| MS.gene29067.t1 | AT5G14420 | 72.922 | 373 | 84 | 6 | 47 | 410 | 79 | 443 | 0.0 | 537 |
| MS.gene29067.t1 | AT3G01650 | 70.137 | 365 | 96 | 4 | 46 | 410 | 113 | 464 | 5.79e-180 | 511 |
| MS.gene29067.t1 | AT3G01650 | 70.137 | 365 | 96 | 4 | 46 | 410 | 113 | 464 | 5.79e-180 | 511 |
| MS.gene29067.t1 | AT1G67800 | 61.882 | 425 | 130 | 7 | 1 | 410 | 1 | 408 | 3.37e-176 | 499 |
| MS.gene29067.t1 | AT1G67800 | 61.882 | 425 | 130 | 7 | 1 | 410 | 1 | 408 | 3.37e-176 | 499 |
| MS.gene29067.t1 | AT1G67800 | 61.882 | 425 | 130 | 7 | 1 | 410 | 1 | 408 | 3.37e-176 | 499 |
| MS.gene29067.t1 | AT1G67800 | 61.882 | 425 | 130 | 7 | 1 | 410 | 1 | 408 | 3.37e-176 | 499 |
| MS.gene29067.t1 | AT1G67800 | 61.882 | 425 | 130 | 7 | 1 | 410 | 21 | 428 | 7.07e-176 | 499 |
| MS.gene29067.t1 | AT1G67800 | 61.787 | 403 | 124 | 6 | 1 | 390 | 21 | 406 | 1.23e-164 | 469 |
| MS.gene29067.t1 | AT5G63970 | 58.840 | 362 | 138 | 3 | 62 | 423 | 4 | 354 | 2.36e-145 | 418 |
| MS.gene29067.t1 | AT5G63970 | 58.840 | 362 | 138 | 3 | 62 | 423 | 4 | 354 | 2.36e-145 | 418 |
| MS.gene29067.t1 | AT1G79380 | 53.699 | 365 | 146 | 3 | 59 | 421 | 43 | 386 | 6.95e-136 | 395 |
| MS.gene29067.t1 | AT1G24545 | 51.376 | 109 | 15 | 1 | 110 | 218 | 46 | 116 | 3.56e-26 | 104 |
| MS.gene29067.t1 | AT5G07300 | 30.841 | 321 | 156 | 16 | 39 | 335 | 297 | 575 | 7.29e-21 | 95.5 |
| MS.gene29067.t1 | AT5G61910 | 30.827 | 266 | 136 | 12 | 84 | 328 | 1100 | 1338 | 2.71e-19 | 91.3 |
| MS.gene29067.t1 | AT5G61900 | 31.559 | 263 | 138 | 11 | 84 | 328 | 332 | 570 | 1.83e-18 | 88.2 |
| MS.gene29067.t1 | AT5G61900 | 31.559 | 263 | 138 | 11 | 84 | 328 | 332 | 570 | 1.83e-18 | 88.2 |
| MS.gene29067.t1 | AT1G08860 | 32.161 | 199 | 110 | 6 | 88 | 277 | 338 | 520 | 1.04e-17 | 85.9 |
Find 120 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGCACTTTCTGCCTTAA+TGG | 0.161611 | 3.4:-73954998 | MS.gene29067:CDS |
| CAAGATCATGGGTATAATTA+TGG | 0.172281 | 3.4:-73957775 | MS.gene29067:CDS |
| TTGATTCCCTGCTTTGGATT+TGG | 0.265798 | 3.4:-73956816 | MS.gene29067:CDS |
| GGGAATTGGTCCCTCAATTA+AGG | 0.290966 | 3.4:-73956610 | MS.gene29067:CDS |
| ACACTAGAACTTAGTATATT+GGG | 0.298980 | 3.4:-73954952 | MS.gene29067:CDS |
| AACACTAGAACTTAGTATAT+TGG | 0.302323 | 3.4:-73954953 | MS.gene29067:CDS |
| GTCCCTCAATTAAGGCTTGC+AGG | 0.314298 | 3.4:-73956602 | MS.gene29067:intron |
| AGGAAGTGCTGTCACGGTAT+AGG | 0.333904 | 3.4:-73956631 | MS.gene29067:CDS |
| ATGGATATAGCTTGTTCATA+TGG | 0.335470 | 3.4:+73956876 | None:intergenic |
| ATAGCTTGTTCATATGGATT+TGG | 0.337346 | 3.4:+73956882 | None:intergenic |
| CAACCAAAGGCCATGTCCTT+TGG | 0.340444 | 3.4:+73954411 | None:intergenic |
| GGAAGTGCTGTCACGGTATA+GGG | 0.350445 | 3.4:-73956630 | MS.gene29067:CDS |
| CCTCTACCGCCACCTCAATA+TGG | 0.355560 | 3.4:-73954786 | MS.gene29067:CDS |
| CTCCGACTAACACGATTGAT+AGG | 0.359031 | 3.4:+73955457 | None:intergenic |
| CAAACAGCAATCGTAGTAGA+AGG | 0.370156 | 3.4:-73954827 | MS.gene29067:intron |
| TGAGTTTGTTGTGGCAAATA+AGG | 0.372825 | 3.4:+73957796 | None:intergenic |
| AAGATCATGGGTATAATTAT+GGG | 0.373500 | 3.4:-73957774 | MS.gene29067:CDS |
| GGCCTTTGGTTGCGGACATC+AGG | 0.383961 | 3.4:-73954400 | MS.gene29067:CDS |
| GATAACTTGATTCCCTGCTT+TGG | 0.393441 | 3.4:-73956822 | MS.gene29067:CDS |
| AATCCAAAGGACATGGCCTT+TGG | 0.399769 | 3.4:-73954414 | MS.gene29067:CDS |
| GAACAAGCTATATCCATCAT+TGG | 0.402218 | 3.4:-73956870 | MS.gene29067:CDS |
| AAGTTCTGCTTCTGATAATC+AGG | 0.402745 | 3.4:-73954667 | MS.gene29067:intron |
| GTTCTAGTGTTGCCTTGTAC+TGG | 0.417106 | 3.4:+73954965 | None:intergenic |
| TCTGTAGTTTGTGAATTTCA+CGG | 0.432671 | 3.4:-73955064 | MS.gene29067:intron |
| CCATATTGAGGTGGCGGTAG+AGG | 0.433347 | 3.4:+73954786 | None:intergenic |
| AGTGTTGCCTTGTACTGGTC+AGG | 0.437247 | 3.4:+73954970 | None:intergenic |
| GCTGTCACGGTATAGGGAAT+TGG | 0.442286 | 3.4:-73956624 | MS.gene29067:CDS |
| GTGATTGCCATCTCAATGAT+TGG | 0.451178 | 3.4:+73956473 | None:intergenic |
| AAGGACATGGCCTTTGGTTG+CGG | 0.452397 | 3.4:-73954408 | MS.gene29067:CDS |
| CTTTGGATTAGTGAGGCAAA+TGG | 0.455958 | 3.4:+73954428 | None:intergenic |
| TTGGTTGCGGACATCAGGTT+AGG | 0.461767 | 3.4:-73954395 | MS.gene29067:CDS |
| TAATCAATAAAACATGGTAT+TGG | 0.462373 | 3.4:+73956429 | None:intergenic |
| CTGGTCAGGTATTTCCATTA+AGG | 0.465741 | 3.4:+73954984 | None:intergenic |
| AACAAGCTATATCCATCATT+GGG | 0.467106 | 3.4:-73956869 | MS.gene29067:CDS |
| CGATTATAATAGCTTGGAAC+AGG | 0.471695 | 3.4:-73957662 | MS.gene29067:intron |
| AAATAAGGTGATTGATATTG+AGG | 0.472323 | 3.4:+73957811 | None:intergenic |
| GAGTCTTCTAATCTCATTGT+TGG | 0.475677 | 3.4:-73957075 | MS.gene29067:CDS |
| AGAAGTGTTGACATTGATCA+TGG | 0.476712 | 3.4:-73955627 | MS.gene29067:CDS |
| CCCTGCTTTGGATTTGGAGA+TGG | 0.478032 | 3.4:-73956810 | MS.gene29067:intron |
| TCGGAGTTGGAGACGGGCCA+TGG | 0.479810 | 3.4:-73955440 | MS.gene29067:CDS |
| ATTCAAAACGGAGGGGCTCT+AGG | 0.483859 | 3.4:-73957870 | MS.gene29067:CDS |
| GGAGATGCCTGCATGACATC+GGG | 0.485131 | 3.4:-73956911 | MS.gene29067:CDS |
| CCACAACAAACTCAAGATCA+TGG | 0.488605 | 3.4:-73957787 | MS.gene29067:CDS |
| TGATTGCCATCTCAATGATT+GGG | 0.493683 | 3.4:+73956474 | None:intergenic |
| ACCATCTCCAAATCCAAAGC+AGG | 0.494526 | 3.4:+73956809 | None:intergenic |
| TTTGGATTAGTGAGGCAAAT+GGG | 0.497200 | 3.4:+73954429 | None:intergenic |
| TATCAGAAGCAGAACTTGCA+TGG | 0.497272 | 3.4:+73954673 | None:intergenic |
| TGTTTCTGAGATGGTGCACT+GGG | 0.504563 | 3.4:+73954714 | None:intergenic |
| ACAAAGAGTAATGAATGGAC+AGG | 0.514224 | 3.4:-73957042 | MS.gene29067:intron |
| CCTTCGTATTATTAGGTGCA+AGG | 0.515001 | 3.4:-73956944 | MS.gene29067:intron |
| GAACATGGATCGGTCTAGAA+AGG | 0.521952 | 3.4:-73955028 | MS.gene29067:CDS |
| GTGTTTCTGAGATGGTGCAC+TGG | 0.522595 | 3.4:+73954713 | None:intergenic |
| TAGAAGCTATTGTGAAAGCT+AGG | 0.523251 | 3.4:-73955575 | MS.gene29067:intron |
| ACTGAGGCTCTAGCGAGTGC+TGG | 0.528317 | 3.4:-73957102 | MS.gene29067:CDS |
| TCCGACTAACACGATTGATA+GGG | 0.532859 | 3.4:+73955458 | None:intergenic |
| GCCTTCACTTTGCTCAACAA+TGG | 0.536111 | 3.4:+73956451 | None:intergenic |
| GTTCATGCCCGATGTCATGC+AGG | 0.538532 | 3.4:+73956904 | None:intergenic |
| ATCAGAAGCAGAACTTGCAT+GGG | 0.538923 | 3.4:+73954674 | None:intergenic |
| TAGGTGCAAGGTCGTTTCAA+AGG | 0.540109 | 3.4:-73956932 | MS.gene29067:CDS |
| TACCTGCAAGCCTTAATTGA+GGG | 0.540865 | 3.4:+73956600 | None:intergenic |
| ATTGATTATAGCAGATGGGC+AGG | 0.543503 | 3.4:-73956414 | MS.gene29067:intron |
| TGTTAGTCGGAGTTGGAGAC+GGG | 0.547110 | 3.4:-73955446 | MS.gene29067:CDS |
| AAATTATCAAATGCTCGTGC+AGG | 0.552178 | 3.4:+73955387 | None:intergenic |
| CCCCTATCAATCGTGTTAGT+CGG | 0.556894 | 3.4:-73955459 | MS.gene29067:CDS |
| GCTCAAAGCTATGGTGGTGT+TGG | 0.558744 | 3.4:-73957739 | MS.gene29067:CDS |
| GGCAGCATCAACACATGACC+AGG | 0.559053 | 3.4:-73956699 | MS.gene29067:intron |
| ACACCACCATAGCTTTGAGC+TGG | 0.560332 | 3.4:+73957742 | None:intergenic |
| ATTTGCCCCAATCATTGAGA+TGG | 0.560513 | 3.4:-73956480 | MS.gene29067:CDS |
| AGGAGATGCCTGCATGACAT+CGG | 0.561279 | 3.4:-73956912 | MS.gene29067:CDS |
| CCACCTCCAGCTCAAAGCTA+TGG | 0.561873 | 3.4:-73957748 | MS.gene29067:CDS |
| TGGATCACATTCAAAACGGA+GGG | 0.562804 | 3.4:-73957878 | MS.gene29067:CDS |
| GTGTTAGTCGGAGTTGGAGA+CGG | 0.563288 | 3.4:-73955447 | MS.gene29067:CDS |
| AACATTATCATCCTTTGATG+AGG | 0.563505 | 3.4:-73956844 | MS.gene29067:CDS |
| GATTGATATTGAGGAAACAA+AGG | 0.564823 | 3.4:+73957820 | None:intergenic |
| AACTGTTTCATCATGTCCCA+TGG | 0.564913 | 3.4:+73955423 | None:intergenic |
| CCATAGCTTTGAGCTGGAGG+TGG | 0.566424 | 3.4:+73957748 | None:intergenic |
| ATGATTGGGGCAAATGATGT+AGG | 0.568651 | 3.4:+73956488 | None:intergenic |
| GGAAATACCTGACCAGTACA+AGG | 0.568682 | 3.4:-73954977 | MS.gene29067:CDS |
| GGAAATAATGTCGAAGAACA+TGG | 0.569628 | 3.4:-73955043 | MS.gene29067:CDS |
| CGGAGTTGGAGACGGGCCAT+GGG | 0.571306 | 3.4:-73955439 | MS.gene29067:CDS |
| ATACCTGCAAGCCTTAATTG+AGG | 0.572097 | 3.4:+73956599 | None:intergenic |
| AATCAAGTTATCCTCATCAA+AGG | 0.573410 | 3.4:+73956833 | None:intergenic |
| AGGTGACGATTATAATAGCT+TGG | 0.574072 | 3.4:-73957668 | MS.gene29067:CDS |
| AAAGATGGTGCGCCATATTG+AGG | 0.575601 | 3.4:+73954774 | None:intergenic |
| TCAATCGTGTTAGTCGGAGT+TGG | 0.576611 | 3.4:-73955453 | MS.gene29067:CDS |
| GGTGCGCCATATTGAGGTGG+CGG | 0.578627 | 3.4:+73954780 | None:intergenic |
| CCACCATAGCTTTGAGCTGG+AGG | 0.583234 | 3.4:+73957745 | None:intergenic |
| GCGAGAACAAGTGAAGTGGC+TGG | 0.584716 | 3.4:+73954369 | None:intergenic |
| AACCTGATGTCCGCAACCAA+AGG | 0.585845 | 3.4:+73954398 | None:intergenic |
| TGGGTGGATCACATTCAAAA+CGG | 0.587543 | 3.4:-73957882 | MS.gene29067:CDS |
| GGCAACGTTCTTCATCCTCA+AGG | 0.589564 | 3.4:-73957849 | MS.gene29067:CDS |
| CTGCTATAATCAATAAAACA+TGG | 0.591905 | 3.4:+73956423 | None:intergenic |
| CCTCACTAATCCAAAGGACA+TGG | 0.593573 | 3.4:-73954421 | MS.gene29067:CDS |
| CCTCCAGCTCAAAGCTATGG+TGG | 0.594240 | 3.4:-73957745 | MS.gene29067:CDS |
| CACAACAAACTCAAGATCAT+GGG | 0.595326 | 3.4:-73957786 | MS.gene29067:CDS |
| ACCATTGTTGAGCAAAGTGA+AGG | 0.599368 | 3.4:-73956452 | MS.gene29067:CDS |
| CCATGATCTTGAGTTTGTTG+TGG | 0.599472 | 3.4:+73957787 | None:intergenic |
| TAATGTCGAAGAACATGGAT+CGG | 0.600427 | 3.4:-73955038 | MS.gene29067:CDS |
| CCGACTAACACGATTGATAG+GGG | 0.607843 | 3.4:+73955459 | None:intergenic |
| CCATGTCCTTTGGATTAGTG+AGG | 0.610545 | 3.4:+73954421 | None:intergenic |
| CCATCTCCAAATCCAAAGCA+GGG | 0.616817 | 3.4:+73956810 | None:intergenic |
| GATTTGAGGAAGTGCTGTCA+CGG | 0.617061 | 3.4:-73956637 | MS.gene29067:CDS |
| GAAGTGTTGACATTGATCAT+GGG | 0.625872 | 3.4:-73955626 | MS.gene29067:CDS |
| TCCATATTGAAAGGTAACTG+AGG | 0.629326 | 3.4:-73957118 | MS.gene29067:intron |
| CACTAGAACTTAGTATATTG+GGG | 0.632087 | 3.4:-73954951 | MS.gene29067:intron |
| GTAACACCGTGTTTCTGAGA+TGG | 0.632837 | 3.4:+73954705 | None:intergenic |
| AGATCATGGGTATAATTATG+GGG | 0.633547 | 3.4:-73957773 | MS.gene29067:CDS |
| GTAGAAGGAATGATATACAC+AGG | 0.636992 | 3.4:-73954812 | MS.gene29067:CDS |
| AAACAAAGGATTTGACCTTG+AGG | 0.645932 | 3.4:+73957834 | None:intergenic |
| TAGGATAAAGAAATCATGGG+TGG | 0.653785 | 3.4:-73957898 | None:intergenic |
| TCAGAAGCAGAACTTGCATG+GGG | 0.654884 | 3.4:+73954675 | None:intergenic |
| CATTTGCCTCACTAATCCAA+AGG | 0.656843 | 3.4:-73954427 | MS.gene29067:CDS |
| GTGGATCACATTCAAAACGG+AGG | 0.665184 | 3.4:-73957879 | MS.gene29067:CDS |
| GCATGCGAGAACAAGTGAAG+TGG | 0.670387 | 3.4:+73954365 | None:intergenic |
| GATGGTGCGCCATATTGAGG+TGG | 0.673589 | 3.4:+73954777 | None:intergenic |
| GATTGCCATCTCAATGATTG+GGG | 0.675274 | 3.4:+73956475 | None:intergenic |
| GGATCACATTCAAAACGGAG+GGG | 0.707784 | 3.4:-73957877 | MS.gene29067:CDS |
| CAGAAGCAGAACTTGCATGG+GGG | 0.725671 | 3.4:+73954676 | None:intergenic |
| AGTGCACCATCTCAGAAACA+CGG | 0.736607 | 3.4:-73954711 | MS.gene29067:CDS |
| GTTTCTGAGATGGTGCACTG+GGG | 0.783884 | 3.4:+73954715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTATTTAATA+TGG | + | chr3.4:73956046-73956065 | None:intergenic | 0.0% |
| !! | AAAAAAAAATTCAACTTAAA+TGG | + | chr3.4:73957380-73957399 | None:intergenic | 10.0% |
| !!! | ATATAAAATAGACTTTTTTA+GGG | - | chr3.4:73956316-73956335 | MS.gene29067:intron | 10.0% |
| !!! | AAGATTTTATTTTCTTTCAA+GGG | - | chr3.4:73955955-73955974 | MS.gene29067:intron | 15.0% |
| !!! | AATTCTTTTAATTGTTATCT+TGG | - | chr3.4:73954846-73954865 | MS.gene29067:intron | 15.0% |
| !!! | GATATAAAATAGACTTTTTT+AGG | - | chr3.4:73956315-73956334 | MS.gene29067:intron | 15.0% |
| !!! | TATAAAATAGACTTTTTTAG+GGG | - | chr3.4:73956317-73956336 | MS.gene29067:intron | 15.0% |
| !! | ATATCATATCAAGTAAATAG+AGG | + | chr3.4:73957068-73957087 | None:intergenic | 20.0% |
| !! | CTATTTAATATTTACTCTGA+AGG | - | chr3.4:73956360-73956379 | MS.gene29067:intron | 20.0% |
| !! | TAATCAATAAAACATGGTAT+TGG | + | chr3.4:73955807-73955826 | None:intergenic | 20.0% |
| !! | TGTTGACACAATTAAAAAAA+AGG | + | chr3.4:73955251-73955270 | None:intergenic | 20.0% |
| !! | TTGAAATCAAATAAATGAAG+TGG | - | chr3.4:73955903-73955922 | MS.gene29067:intron | 20.0% |
| !!! | AGATTTTATTTTCTTTCAAG+GGG | - | chr3.4:73955956-73955975 | MS.gene29067:intron | 20.0% |
| !!! | ATTTTACAAAGAGTAATGAA+TGG | - | chr3.4:73955186-73955205 | MS.gene29067:intron | 20.0% |
| !!! | GAAGATTTTATTTTCTTTCA+AGG | - | chr3.4:73955954-73955973 | MS.gene29067:intron | 20.0% |
| !!! | TTTTATTGATTATAGCAGAT+GGG | - | chr3.4:73955815-73955834 | MS.gene29067:intron | 20.0% |
| !!! | TTTTTCTTTTCCATATTGAA+AGG | - | chr3.4:73955106-73955125 | MS.gene29067:intron | 20.0% |
| ! | AAATAAGGTGATTGATATTG+AGG | + | chr3.4:73954425-73954444 | None:intergenic | 25.0% |
| ! | AACACTAGAACTTAGTATAT+TGG | - | chr3.4:73957280-73957299 | MS.gene29067:intron | 25.0% |
| ! | AAGATCATGGGTATAATTAT+GGG | - | chr3.4:73954459-73954478 | MS.gene29067:intron | 25.0% |
| ! | ACACTAGAACTTAGTATATT+GGG | - | chr3.4:73957281-73957300 | MS.gene29067:intron | 25.0% |
| ! | AGAGCTTAAAGTCAAAAAAA+TGG | + | chr3.4:73954625-73954644 | None:intergenic | 25.0% |
| ! | ATAAAGAAAGATATGAAGTG+TGG | + | chr3.4:73955670-73955689 | None:intergenic | 25.0% |
| ! | ATAGTTCCATACAAAAACTA+TGG | + | chr3.4:73956444-73956463 | None:intergenic | 25.0% |
| ! | CTGCTATAATCAATAAAACA+TGG | + | chr3.4:73955813-73955832 | None:intergenic | 25.0% |
| ! | GACAAGAAGTTTACAAAAAT+AGG | - | chr3.4:73954545-73954564 | MS.gene29067:intron | 25.0% |
| ! | GAGCTTAAAGTCAAAAAAAT+GGG | + | chr3.4:73954624-73954643 | None:intergenic | 25.0% |
| ! | TAAAATGAATGCAACATTTG+TGG | - | chr3.4:73956068-73956087 | MS.gene29067:intron | 25.0% |
| ! | TAACTTACCTTCGTATTATT+AGG | - | chr3.4:73955282-73955301 | MS.gene29067:intron | 25.0% |
| ! | TGGCATTATCATTATAAAGA+GGG | - | chr3.4:73954866-73954885 | MS.gene29067:intron | 25.0% |
| ! | TTAGAATCTAATCTAATCTC+TGG | - | chr3.4:73955482-73955501 | MS.gene29067:intron | 25.0% |
| ! | TTCCTATACAATAAACACAA+AGG | - | chr3.4:73957087-73957106 | MS.gene29067:CDS | 25.0% |
| ! | TTGGCATTATCATTATAAAG+AGG | - | chr3.4:73954865-73954884 | MS.gene29067:intron | 25.0% |
| !! | AAAGAGATACAATAACTTGT+TGG | - | chr3.4:73956124-73956143 | MS.gene29067:intron | 25.0% |
| !! | AATTAGCCATAGTTTTTGTA+TGG | - | chr3.4:73956435-73956454 | MS.gene29067:CDS | 25.0% |
| !! | ACCAAAAAGATTAGTTAAGA+GGG | - | chr3.4:73956099-73956118 | MS.gene29067:intron | 25.0% |
| !! | ATGTTGAATCTTTTCTTTGT+AGG | - | chr3.4:73957310-73957329 | MS.gene29067:intron | 25.0% |
| !! | TTGAATCATTTGGAACTATT+TGG | - | chr3.4:73954674-73954693 | MS.gene29067:CDS | 25.0% |
| !! | TTTAATATGGATAAGTGTTG+AGG | + | chr3.4:73956033-73956052 | None:intergenic | 25.0% |
| !!! | AAGAGATACAATAACTTGTT+GGG | - | chr3.4:73956125-73956144 | MS.gene29067:intron | 25.0% |
| !!! | GTTTTATTGATTATAGCAGA+TGG | - | chr3.4:73955814-73955833 | MS.gene29067:intron | 25.0% |
| !!! | TATACATACTTGCTATGTTA+CGG | - | chr3.4:73954712-73954731 | MS.gene29067:CDS | 25.0% |
| !!! | TATTGTTTGTTGGTTTACAT+TGG | - | chr3.4:73955513-73955532 | MS.gene29067:intron | 25.0% |
| !!! | TCGATTACTCGATTTTATTT+AGG | - | chr3.4:73957001-73957020 | MS.gene29067:intron | 25.0% |
| AAAAGGATTTGACCAATGAA+TGG | + | chr3.4:73954766-73954785 | None:intergenic | 30.0% | |
| AACAAGCTATATCCATCATT+GGG | - | chr3.4:73955364-73955383 | MS.gene29067:intron | 30.0% | |
| AACATTATCATCCTTTGATG+AGG | - | chr3.4:73955389-73955408 | MS.gene29067:CDS | 30.0% | |
| AATCAAGTTATCCTCATCAA+AGG | + | chr3.4:73955403-73955422 | None:intergenic | 30.0% | |
| AATTTCAGCATCAACAATCT+CGG | + | chr3.4:73955989-73956008 | None:intergenic | 30.0% | |
| AGATCATGGGTATAATTATG+GGG | - | chr3.4:73954460-73954479 | MS.gene29067:intron | 30.0% | |
| ATTTGACCAATGAATGGAAA+TGG | + | chr3.4:73954760-73954779 | None:intergenic | 30.0% | |
| CAAGATCATGGGTATAATTA+TGG | - | chr3.4:73954458-73954477 | MS.gene29067:intron | 30.0% | |
| CAATAAACAGCATAAGCAAA+AGG | + | chr3.4:73955706-73955725 | None:intergenic | 30.0% | |
| CACTAGAACTTAGTATATTG+GGG | - | chr3.4:73957282-73957301 | MS.gene29067:intron | 30.0% | |
| CATTGAAACTAAAAACTTCC+TGG | + | chr3.4:73955555-73955574 | None:intergenic | 30.0% | |
| CTATCGCTAATTATTCAAAG+AGG | - | chr3.4:73954597-73954616 | MS.gene29067:intron | 30.0% | |
| CTTAAGTTTAATGGTCAATG+TGG | - | chr3.4:73956383-73956402 | MS.gene29067:intron | 30.0% | |
| GAAACAACAAACTCACATTT+AGG | + | chr3.4:73956186-73956205 | None:intergenic | 30.0% | |
| GACCTTTGTGTTTATTGTAT+AGG | + | chr3.4:73957092-73957111 | None:intergenic | 30.0% | |
| GATTGATATTGAGGAAACAA+AGG | + | chr3.4:73954416-73954435 | None:intergenic | 30.0% | |
| GTAGCAAAGGTAAAGAATAA+AGG | + | chr3.4:73956702-73956721 | None:intergenic | 30.0% | |
| TAAGCACATTATTGTAGCAA+AGG | + | chr3.4:73956715-73956734 | None:intergenic | 30.0% | |
| TACTGTATAGTTCAAACACA+CGG | + | chr3.4:73956978-73956997 | None:intergenic | 30.0% | |
| TATTGTCCCTAATTTATTGC+AGG | - | chr3.4:73955721-73955740 | MS.gene29067:intron | 30.0% | |
| TGTAATAGAGAGAAAATGAG+AGG | - | chr3.4:73956940-73956959 | MS.gene29067:intron | 30.0% | |
| ! | ATTTTCTTTCAAGGGGTAAA+AGG | - | chr3.4:73955963-73955982 | MS.gene29067:intron | 30.0% |
| ! | GACCAAAAAGATTAGTTAAG+AGG | - | chr3.4:73956098-73956117 | MS.gene29067:intron | 30.0% |
| ! | TAGATTTTGTCATGGATTTG+AGG | - | chr3.4:73955582-73955601 | MS.gene29067:CDS | 30.0% |
| ! | TCCCTCTTAACTAATCTTTT+TGG | + | chr3.4:73956103-73956122 | None:intergenic | 30.0% |
| ! | TCTGTAGTTTGTGAATTTCA+CGG | - | chr3.4:73957169-73957188 | MS.gene29067:intron | 30.0% |
| ! | TGTGGAAACATTTTCTTTTC+TGG | - | chr3.4:73954812-73954831 | MS.gene29067:CDS | 30.0% |
| ! | TTTCAAGATGTTTCTGTAGT+TGG | - | chr3.4:73954998-73955017 | MS.gene29067:CDS | 30.0% |
| !! | ACGAGCATTTGATAATTTTC+AGG | - | chr3.4:73956851-73956870 | MS.gene29067:CDS | 30.0% |
| !! | ATAGCTTGTTCATATGGATT+TGG | + | chr3.4:73955354-73955373 | None:intergenic | 30.0% |
| !! | ATGGATATAGCTTGTTCATA+TGG | + | chr3.4:73955360-73955379 | None:intergenic | 30.0% |
| !! | ATTCATGCAGTCGTTTTAAA+AGG | + | chr3.4:73954783-73954802 | None:intergenic | 30.0% |
| !! | CTTTGTAGGCTTTATTGTAT+TGG | - | chr3.4:73957324-73957343 | MS.gene29067:intron | 30.0% |
| !! | TGATAATGTTTTCCCAATGA+TGG | + | chr3.4:73955379-73955398 | None:intergenic | 30.0% |
| !!! | AGTTTTTAGTTTCAATGCTG+AGG | - | chr3.4:73955558-73955577 | MS.gene29067:intron | 30.0% |
| AAACAAAGGATTTGACCTTG+AGG | + | chr3.4:73954402-73954421 | None:intergenic | 35.0% | |
| AAAGAGAAGTCGAAATGCTA+CGG | + | chr3.4:73957638-73957657 | None:intergenic | 35.0% | |
| AAATTATCAAATGCTCGTGC+AGG | + | chr3.4:73956849-73956868 | None:intergenic | 35.0% | |
| AACCGACAACTTCTATGAAT+AGG | + | chr3.4:73956886-73956905 | None:intergenic | 35.0% | |
| AAGTAAACTTTGCAGTGACT+TGG | + | chr3.4:73957710-73957729 | None:intergenic | 35.0% | |
| AAGTTCTGCTTCTGATAATC+AGG | - | chr3.4:73957566-73957585 | MS.gene29067:intron | 35.0% | |
| AATGAATGCAACATTTGTGG+TGG | - | chr3.4:73956071-73956090 | MS.gene29067:intron | 35.0% | |
| AATTGCCCAATTAACTAACC+TGG | + | chr3.4:73956273-73956292 | None:intergenic | 35.0% | |
| ACAAAGAGTAATGAATGGAC+AGG | - | chr3.4:73955191-73955210 | MS.gene29067:intron | 35.0% | |
| ACAACAAACTCACATTTAGG+TGG | + | chr3.4:73956183-73956202 | None:intergenic | 35.0% | |
| AGGTGACGATTATAATAGCT+TGG | - | chr3.4:73954565-73954584 | MS.gene29067:intron | 35.0% | |
| AGTTGCTCAACATGAACATT+TGG | + | chr3.4:73954973-73954992 | None:intergenic | 35.0% | |
| CACAAATAGACTTCTACATG+AGG | + | chr3.4:73957674-73957693 | None:intergenic | 35.0% | |
| CACAACAAACTCAAGATCAT+GGG | - | chr3.4:73954447-73954466 | MS.gene29067:intron | 35.0% | |
| CGATTATAATAGCTTGGAAC+AGG | - | chr3.4:73954571-73954590 | MS.gene29067:intron | 35.0% | |
| CTCATGTAGAAGTCTATTTG+TGG | - | chr3.4:73957672-73957691 | MS.gene29067:CDS | 35.0% | |
| CTCCTATTCATAGAAGTTGT+CGG | - | chr3.4:73956881-73956900 | MS.gene29067:CDS | 35.0% | |
| GAACAAGCTATATCCATCAT+TGG | - | chr3.4:73955363-73955382 | MS.gene29067:intron | 35.0% | |
| GAGTCTTCTAATCTCATTGT+TGG | - | chr3.4:73955158-73955177 | MS.gene29067:intron | 35.0% | |
| GGAAATAATGTCGAAGAACA+TGG | - | chr3.4:73957190-73957209 | MS.gene29067:intron | 35.0% | |
| GGCTGAGTTATATTGTTTGT+TGG | - | chr3.4:73955503-73955522 | MS.gene29067:intron | 35.0% | |
| GTAGAAGGAATGATATACAC+AGG | - | chr3.4:73957421-73957440 | MS.gene29067:intron | 35.0% | |
| GTAGGTCCTGCAATAAATTA+GGG | + | chr3.4:73955730-73955749 | None:intergenic | 35.0% | |
| TAATGTCGAAGAACATGGAT+CGG | - | chr3.4:73957195-73957214 | MS.gene29067:intron | 35.0% | |
| TAGAAGCTATTGTGAAAGCT+AGG | - | chr3.4:73956658-73956677 | MS.gene29067:CDS | 35.0% | |
| TCCATATTGAAAGGTAACTG+AGG | - | chr3.4:73955115-73955134 | MS.gene29067:intron | 35.0% | |
| TGATTGCCATCTCAATGATT+GGG | + | chr3.4:73955762-73955781 | None:intergenic | 35.0% | |
| TGTAGGTCCTGCAATAAATT+AGG | + | chr3.4:73955731-73955750 | None:intergenic | 35.0% | |
| TGTTCAGGTCTTGAATCATT+TGG | - | chr3.4:73954664-73954683 | MS.gene29067:intron | 35.0% | |
| TTTGACAAACAACAGTGTTC+AGG | - | chr3.4:73954649-73954668 | MS.gene29067:intron | 35.0% | |
| ! | CACATTTAGGTGGTGTTTTT+AGG | + | chr3.4:73956173-73956192 | None:intergenic | 35.0% |
| ! | CAGAACCAGGTTAGTTAATT+GGG | - | chr3.4:73956265-73956284 | MS.gene29067:intron | 35.0% |
| ! | CTCTGAAGGCTTAAGTTTAA+TGG | - | chr3.4:73956374-73956393 | MS.gene29067:intron | 35.0% |
| ! | GTTCTGCAATATGGCTTTTT+AGG | + | chr3.4:73956251-73956270 | None:intergenic | 35.0% |
| ! | TACTTGCCATTTCCATTCAT+TGG | - | chr3.4:73954751-73954770 | MS.gene29067:CDS | 35.0% |
| !! | AGAAGTGTTGACATTGATCA+TGG | - | chr3.4:73956606-73956625 | MS.gene29067:CDS | 35.0% |
| !! | CTCGATTTTATTTAGGCTCA+AGG | - | chr3.4:73957008-73957027 | MS.gene29067:intron | 35.0% |
| !! | GAAGTGTTGACATTGATCAT+GGG | - | chr3.4:73956607-73956626 | MS.gene29067:CDS | 35.0% |
| !! | TGAGTTTGTTGTGGCAAATA+AGG | + | chr3.4:73954440-73954459 | None:intergenic | 35.0% |
| !! | TGCATGAATTTTAGAAGCTG+TGG | - | chr3.4:73954794-73954813 | MS.gene29067:CDS | 35.0% |
| !! | TTTGGATTAGTGAGGCAAAT+GGG | + | chr3.4:73957807-73957826 | None:intergenic | 35.0% |
| !!! | AATAGACTTTTTTAGGGGAG+AGG | - | chr3.4:73956322-73956341 | MS.gene29067:intron | 35.0% |
| !!! | ATTTAGGTGGTGTTTTTAGG+AGG | + | chr3.4:73956170-73956189 | None:intergenic | 35.0% |
| !!! | TGTTTTGACTGGAAGCTTTT+GGG | + | chr3.4:73957491-73957510 | None:intergenic | 35.0% |
| !!! | TTTAGGTGGTGTTTTTAGGA+GGG | + | chr3.4:73956169-73956188 | None:intergenic | 35.0% |
| AAAAGCCATATTGCAGAACC+AGG | - | chr3.4:73956252-73956271 | MS.gene29067:intron | 40.0% | |
| AACTGTTTCATCATGTCCCA+TGG | + | chr3.4:73956813-73956832 | None:intergenic | 40.0% | |
| AAGAGAGTAGTGTGTGTTGA+AGG | + | chr3.4:73956209-73956228 | None:intergenic | 40.0% | |
| ACCATTGTTGAGCAAAGTGA+AGG | - | chr3.4:73955781-73955800 | MS.gene29067:intron | 40.0% | |
| ACTAGTGTAGTGCCAAAAGT+CGG | + | chr3.4:73955049-73955068 | None:intergenic | 40.0% | |
| AGAGAGTAGTGTGTGTTGAA+GGG | + | chr3.4:73956208-73956227 | None:intergenic | 40.0% | |
| ATACCTGCAAGCCTTAATTG+AGG | + | chr3.4:73955637-73955656 | None:intergenic | 40.0% | |
| ATCAGAAGCAGAACTTGCAT+GGG | + | chr3.4:73957562-73957581 | None:intergenic | 40.0% | |
| ATGATTGGGGCAAATGATGT+AGG | + | chr3.4:73955748-73955767 | None:intergenic | 40.0% | |
| ATTGATTATAGCAGATGGGC+AGG | - | chr3.4:73955819-73955838 | MS.gene29067:intron | 40.0% | |
| ATTTGCCCCAATCATTGAGA+TGG | - | chr3.4:73955753-73955772 | MS.gene29067:intron | 40.0% | |
| CAAACAGCAATCGTAGTAGA+AGG | - | chr3.4:73957406-73957425 | MS.gene29067:intron | 40.0% | |
| CATTTGCCTCACTAATCCAA+AGG | - | chr3.4:73957806-73957825 | MS.gene29067:CDS | 40.0% | |
| CCACAACAAACTCAAGATCA+TGG | - | chr3.4:73954446-73954465 | MS.gene29067:intron | 40.0% | |
| CCTTCGTATTATTAGGTGCA+AGG | - | chr3.4:73955289-73955308 | MS.gene29067:intron | 40.0% | |
| CCTTGCACCTAATAATACGA+AGG | + | chr3.4:73955292-73955311 | None:intergenic | 40.0% | |
| CTGGTCAGGTATTTCCATTA+AGG | + | chr3.4:73957252-73957271 | None:intergenic | 40.0% | |
| GATAACTTGATTCCCTGCTT+TGG | - | chr3.4:73955411-73955430 | MS.gene29067:CDS | 40.0% | |
| GATTGATAGGGGATATTCAC+TGG | + | chr3.4:73956766-73956785 | None:intergenic | 40.0% | |
| GATTGCCATCTCAATGATTG+GGG | + | chr3.4:73955761-73955780 | None:intergenic | 40.0% | |
| GCCTCAGTTACCTTTCAATA+TGG | + | chr3.4:73955119-73955138 | None:intergenic | 40.0% | |
| GGTAAAGAATAAAGGACCAC+AGG | + | chr3.4:73956694-73956713 | None:intergenic | 40.0% | |
| GTGATTGCCATCTCAATGAT+TGG | + | chr3.4:73955763-73955782 | None:intergenic | 40.0% | |
| GTTTGCACTTTCTGCCTTAA+TGG | - | chr3.4:73957235-73957254 | MS.gene29067:intron | 40.0% | |
| TACCTGCAAGCCTTAATTGA+GGG | + | chr3.4:73955636-73955655 | None:intergenic | 40.0% | |
| TAGGCTACTAGTGCTATCAA+GGG | + | chr3.4:73956232-73956251 | None:intergenic | 40.0% | |
| TATCAGAAGCAGAACTTGCA+TGG | + | chr3.4:73957563-73957582 | None:intergenic | 40.0% | |
| TCCGACTAACACGATTGATA+GGG | + | chr3.4:73956778-73956797 | None:intergenic | 40.0% | |
| TGGATCACATTCAAAACGGA+GGG | - | chr3.4:73954355-73954374 | MS.gene29067:CDS | 40.0% | |
| TGGGTGGATCACATTCAAAA+CGG | - | chr3.4:73954351-73954370 | MS.gene29067:CDS | 40.0% | |
| TTAGGCTACTAGTGCTATCA+AGG | + | chr3.4:73956233-73956252 | None:intergenic | 40.0% | |
| ! | AGTGTTGAGGTGTTCAGTAA+AGG | + | chr3.4:73956020-73956039 | None:intergenic | 40.0% |
| ! | CAAGATGTTTCTGTAGTTGG+AGG | - | chr3.4:73955001-73955020 | MS.gene29067:CDS | 40.0% |
| ! | GAAGATTGTCAACTTTTCGC+AGG | - | chr3.4:73956578-73956597 | MS.gene29067:intron | 40.0% |
| ! | GAGAGAAAATGAGAGGCATA+TGG | - | chr3.4:73956947-73956966 | MS.gene29067:intron | 40.0% |
| ! | GCAGAACCAGGTTAGTTAAT+TGG | - | chr3.4:73956264-73956283 | MS.gene29067:intron | 40.0% |
| ! | GCTGAGGATAGATTTTGTCA+TGG | - | chr3.4:73955574-73955593 | MS.gene29067:intron | 40.0% |
| ! | TGTTTGCTTTCTCTTGCTGT+TGG | - | chr3.4:73957598-73957617 | MS.gene29067:intron | 40.0% |
| ! | TTGATTCCCTGCTTTGGATT+TGG | - | chr3.4:73955417-73955436 | MS.gene29067:CDS | 40.0% |
| !! | ACTAACCTGGTTCTGCAATA+TGG | + | chr3.4:73956260-73956279 | None:intergenic | 40.0% |
| !! | AGCTAAAGAGCATTCTGTCA+TGG | - | chr3.4:73956487-73956506 | MS.gene29067:CDS | 40.0% |
| !! | CCATGATCTTGAGTTTGTTG+TGG | + | chr3.4:73954449-73954468 | None:intergenic | 40.0% |
| !! | CTTTGGATTAGTGAGGCAAA+TGG | + | chr3.4:73957808-73957827 | None:intergenic | 40.0% |
| !! | TTTTGACTGGAAGCTTTTGG+GGG | + | chr3.4:73957489-73957508 | None:intergenic | 40.0% |
| !!! | CTGTTTTGACTGGAAGCTTT+TGG | + | chr3.4:73957492-73957511 | None:intergenic | 40.0% |
| !!! | GTTTTGACTGGAAGCTTTTG+GGG | + | chr3.4:73957490-73957509 | None:intergenic | 40.0% |
| !!! | TTAGGTGGTGTTTTTAGGAG+GGG | + | chr3.4:73956168-73956187 | None:intergenic | 40.0% |
| AAAGATGGTGCGCCATATTG+AGG | + | chr3.4:73957462-73957481 | None:intergenic | 45.0% | |
| AATCCAAAGGACATGGCCTT+TGG | - | chr3.4:73957819-73957838 | MS.gene29067:CDS | 45.0% | |
| ACCATCTCCAAATCCAAAGC+AGG | + | chr3.4:73955427-73955446 | None:intergenic | 45.0% | |
| AGTGCACCATCTCAGAAACA+CGG | - | chr3.4:73957522-73957541 | MS.gene29067:intron | 45.0% | |
| ATTATAGCAGATGGGCAGGT+AGG | - | chr3.4:73955823-73955842 | MS.gene29067:intron | 45.0% | |
| CCATCTCCAAATCCAAAGCA+GGG | + | chr3.4:73955426-73955445 | None:intergenic | 45.0% | |
| CCCCTATCAATCGTGTTAGT+CGG | - | chr3.4:73956774-73956793 | MS.gene29067:intron | 45.0% | |
| CCGACTAACACGATTGATAG+GGG | + | chr3.4:73956777-73956796 | None:intergenic | 45.0% | |
| CCTCACTAATCCAAAGGACA+TGG | - | chr3.4:73957812-73957831 | MS.gene29067:CDS | 45.0% | |
| CTCCGACTAACACGATTGAT+AGG | + | chr3.4:73956779-73956798 | None:intergenic | 45.0% | |
| GAACATGGATCGGTCTAGAA+AGG | - | chr3.4:73957205-73957224 | MS.gene29067:intron | 45.0% | |
| GCCTTCACTTTGCTCAACAA+TGG | + | chr3.4:73955785-73955804 | None:intergenic | 45.0% | |
| GCTAGGTAATTATCTGCCTG+TGG | - | chr3.4:73956675-73956694 | MS.gene29067:CDS | 45.0% | |
| GGAAATACCTGACCAGTACA+AGG | - | chr3.4:73957256-73957275 | MS.gene29067:intron | 45.0% | |
| GGATCACATTCAAAACGGAG+GGG | - | chr3.4:73954356-73954375 | MS.gene29067:CDS | 45.0% | |
| GGCTTGCAGGTATTTGAACA+TGG | - | chr3.4:73955644-73955663 | MS.gene29067:intron | 45.0% | |
| GGGAATTGGTCCCTCAATTA+AGG | - | chr3.4:73955623-73955642 | MS.gene29067:CDS | 45.0% | |
| GTGGATCACATTCAAAACGG+AGG | - | chr3.4:73954354-73954373 | MS.gene29067:CDS | 45.0% | |
| GTTCTAGTGTTGCCTTGTAC+TGG | + | chr3.4:73957271-73957290 | None:intergenic | 45.0% | |
| TAGGTGCAAGGTCGTTTCAA+AGG | - | chr3.4:73955301-73955320 | MS.gene29067:intron | 45.0% | |
| TCAATCGTGTTAGTCGGAGT+TGG | - | chr3.4:73956780-73956799 | MS.gene29067:intron | 45.0% | |
| TCAGAAGCAGAACTTGCATG+GGG | + | chr3.4:73957561-73957580 | None:intergenic | 45.0% | |
| TTATAGCAGATGGGCAGGTA+GGG | - | chr3.4:73955824-73955843 | MS.gene29067:intron | 45.0% | |
| ! | GTAACACCGTGTTTCTGAGA+TGG | + | chr3.4:73957531-73957550 | None:intergenic | 45.0% |
| ! | TTTGACTGGAAGCTTTTGGG+GGG | + | chr3.4:73957488-73957507 | None:intergenic | 45.0% |
| !! | AAGAGCATTCTGTCATGGTG+TGG | - | chr3.4:73956492-73956511 | MS.gene29067:CDS | 45.0% |
| !! | CCATGTCCTTTGGATTAGTG+AGG | + | chr3.4:73957815-73957834 | None:intergenic | 45.0% |
| !! | GATTTGAGGAAGTGCTGTCA+CGG | - | chr3.4:73955596-73955615 | MS.gene29067:CDS | 45.0% |
| !! | GTTTTTAGGAGGGGGGAAAT+GGG | + | chr3.4:73956159-73956178 | None:intergenic | 45.0% |
| !! | TGTTTCTGAGATGGTGCACT+GGG | + | chr3.4:73957522-73957541 | None:intergenic | 45.0% |
| !!! | TAGGTGGTGTTTTTAGGAGG+GGG | + | chr3.4:73956167-73956186 | None:intergenic | 45.0% |
| !!! | TGTTTTTAGGAGGGGGGAAA+TGG | + | chr3.4:73956160-73956179 | None:intergenic | 45.0% |
| AACCTGATGTCCGCAACCAA+AGG | + | chr3.4:73957838-73957857 | None:intergenic | 50.0% | |
| AAGGACATGGCCTTTGGTTG+CGG | - | chr3.4:73957825-73957844 | MS.gene29067:CDS | 50.0% | |
| AGGAGATGCCTGCATGACAT+CGG | - | chr3.4:73955321-73955340 | MS.gene29067:intron | 50.0% | |
| ATTCAAAACGGAGGGGCTCT+AGG | - | chr3.4:73954363-73954382 | MS.gene29067:CDS | 50.0% | |
| CAACCAAAGGCCATGTCCTT+TGG | + | chr3.4:73957825-73957844 | None:intergenic | 50.0% | |
| CAGAAGCAGAACTTGCATGG+GGG | + | chr3.4:73957560-73957579 | None:intergenic | 50.0% | |
| CCAAAAGTCGGCACGTTGAT+CGG | + | chr3.4:73955037-73955056 | None:intergenic | 50.0% | |
| GCATGCGAGAACAAGTGAAG+TGG | + | chr3.4:73957871-73957890 | None:intergenic | 50.0% | |
| GCTGTCACGGTATAGGGAAT+TGG | - | chr3.4:73955609-73955628 | MS.gene29067:CDS | 50.0% | |
| GGCAACGTTCTTCATCCTCA+AGG | - | chr3.4:73954384-73954403 | MS.gene29067:CDS | 50.0% | |
| GTCCCTCAATTAAGGCTTGC+AGG | - | chr3.4:73955631-73955650 | MS.gene29067:CDS | 50.0% | |
| GTGTTAGTCGGAGTTGGAGA+CGG | - | chr3.4:73956786-73956805 | MS.gene29067:intron | 50.0% | |
| TGTTAGTCGGAGTTGGAGAC+GGG | - | chr3.4:73956787-73956806 | MS.gene29067:intron | 50.0% | |
| TTGGTTGCGGACATCAGGTT+AGG | - | chr3.4:73957838-73957857 | MS.gene29067:CDS | 50.0% | |
| ! | AGTGTTGCCTTGTACTGGTC+AGG | + | chr3.4:73957266-73957285 | None:intergenic | 50.0% |
| ! | CCCTGCTTTGGATTTGGAGA+TGG | - | chr3.4:73955423-73955442 | MS.gene29067:CDS | 50.0% |
| ! | GCTCAAAGCTATGGTGGTGT+TGG | - | chr3.4:73954494-73954513 | MS.gene29067:intron | 50.0% |
| !! | ACACCACCATAGCTTTGAGC+TGG | + | chr3.4:73954494-73954513 | None:intergenic | 50.0% |
| !! | AGGAAGTGCTGTCACGGTAT+AGG | - | chr3.4:73955602-73955621 | MS.gene29067:CDS | 50.0% |
| !! | GCTTTTGGGGGGTTGAAAGA+TGG | + | chr3.4:73957477-73957496 | None:intergenic | 50.0% |
| !! | GGAAGTGCTGTCACGGTATA+GGG | - | chr3.4:73955603-73955622 | MS.gene29067:CDS | 50.0% |
| !! | GTGTTTCTGAGATGGTGCAC+TGG | + | chr3.4:73957523-73957542 | None:intergenic | 50.0% |
| !! | GTTTCTGAGATGGTGCACTG+GGG | + | chr3.4:73957521-73957540 | None:intergenic | 50.0% |
| !!! | AGGTGGTGTTTTTAGGAGGG+GGG | + | chr3.4:73956166-73956185 | None:intergenic | 50.0% |
| !!! | GGGGCGAAAACTGTTTTGAC+TGG | + | chr3.4:73957502-73957521 | None:intergenic | 50.0% |
| AGAACTTGCATGGGGGTTCG+TGG | + | chr3.4:73957553-73957572 | None:intergenic | 55.0% | |
| CCACCTCCAGCTCAAAGCTA+TGG | - | chr3.4:73954485-73954504 | MS.gene29067:intron | 55.0% | |
| CCTCCAGCTCAAAGCTATGG+TGG | - | chr3.4:73954488-73954507 | MS.gene29067:intron | 55.0% | |
| CCTCTACCGCCACCTCAATA+TGG | - | chr3.4:73957447-73957466 | MS.gene29067:intron | 55.0% | |
| GATGGTGCGCCATATTGAGG+TGG | + | chr3.4:73957459-73957478 | None:intergenic | 55.0% | |
| GCGAGAACAAGTGAAGTGGC+TGG | + | chr3.4:73957867-73957886 | None:intergenic | 55.0% | |
| GGAGATGCCTGCATGACATC+GGG | - | chr3.4:73955322-73955341 | MS.gene29067:intron | 55.0% | |
| GGCAGCATCAACACATGACC+AGG | - | chr3.4:73955534-73955553 | MS.gene29067:intron | 55.0% | |
| GTTCATGCCCGATGTCATGC+AGG | + | chr3.4:73955332-73955351 | None:intergenic | 55.0% | |
| TTAGGAGGGGGGAAATGGGT+CGG | + | chr3.4:73956155-73956174 | None:intergenic | 55.0% | |
| ! | CCATATTGAGGTGGCGGTAG+AGG | + | chr3.4:73957450-73957469 | None:intergenic | 55.0% |
| !! | CCACCATAGCTTTGAGCTGG+AGG | + | chr3.4:73954491-73954510 | None:intergenic | 55.0% |
| !! | CCATAGCTTTGAGCTGGAGG+TGG | + | chr3.4:73954488-73954507 | None:intergenic | 55.0% |
| !!! | CCGATCAACGTGCCGACTTT+TGG | - | chr3.4:73955034-73955053 | MS.gene29067:CDS | 55.0% |
| GGCCTTTGGTTGCGGACATC+AGG | - | chr3.4:73957833-73957852 | MS.gene29067:CDS | 60.0% | |
| GGTGCGCCATATTGAGGTGG+CGG | + | chr3.4:73957456-73957475 | None:intergenic | 60.0% | |
| GGTGTGGCTGTGCTTGTCGT+TGG | - | chr3.4:73956508-73956527 | MS.gene29067:intron | 60.0% | |
| ! | ACTGAGGCTCTAGCGAGTGC+TGG | - | chr3.4:73955131-73955150 | MS.gene29067:intron | 60.0% |
| CGGAGTTGGAGACGGGCCAT+GGG | - | chr3.4:73956794-73956813 | MS.gene29067:intron | 65.0% | |
| TCGGAGTTGGAGACGGGCCA+TGG | - | chr3.4:73956793-73956812 | MS.gene29067:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 73954350 | 73957905 | 73954350 | ID=MS.gene29067 |
| chr3.4 | mRNA | 73954350 | 73957905 | 73954350 | ID=MS.gene29067.t1;Parent=MS.gene29067 |
| chr3.4 | exon | 73957663 | 73957905 | 73957663 | ID=MS.gene29067.t1.exon1;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73957663 | 73957905 | 73957663 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73957043 | 73957127 | 73957043 | ID=MS.gene29067.t1.exon2;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73957043 | 73957127 | 73957043 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73956811 | 73956951 | 73956811 | ID=MS.gene29067.t1.exon3;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73956811 | 73956951 | 73956811 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73956603 | 73956716 | 73956603 | ID=MS.gene29067.t1.exon4;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73956603 | 73956716 | 73956603 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73956415 | 73956512 | 73956415 | ID=MS.gene29067.t1.exon5;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73956415 | 73956512 | 73956415 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73955576 | 73955655 | 73955576 | ID=MS.gene29067.t1.exon6;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73955576 | 73955655 | 73955576 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73955383 | 73955488 | 73955383 | ID=MS.gene29067.t1.exon7;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73955383 | 73955488 | 73955383 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73954952 | 73955079 | 73954952 | ID=MS.gene29067.t1.exon8;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73954952 | 73955079 | 73954952 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73954668 | 73954842 | 73954668 | ID=MS.gene29067.t1.exon9;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73954668 | 73954842 | 73954668 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| chr3.4 | exon | 73954350 | 73954457 | 73954350 | ID=MS.gene29067.t1.exon10;Parent=MS.gene29067.t1 |
| chr3.4 | CDS | 73954350 | 73954457 | 73954350 | ID=cds.MS.gene29067.t1;Parent=MS.gene29067.t1 |
| Gene Sequence |
| Protein sequence |
