Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29494.t1 | XP_003616418.1 | 89.1 | 421 | 35 | 4 | 1 | 419 | 1 | 412 | 5.50E-206 | 726.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29494.t1 | Q9LTT3 | 25.8 | 233 | 136 | 7 | 68 | 267 | 70 | 298 | 6.3e-09 | 63.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29494.t1 | G7KBS3 | 89.1 | 421 | 35 | 4 | 1 | 419 | 1 | 412 | 4.0e-206 | 726.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29494.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051594 | MS.gene29494 | 0.814849 | 1.25E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene29494 | 0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene29494 | 0.800312 | 1.53E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29494.t1 | MTR_5g080030 | 89.286 | 420 | 34 | 4 | 1 | 418 | 1 | 411 | 0.0 | 761 |
| MS.gene29494.t1 | MTR_5g095070 | 64.082 | 245 | 73 | 4 | 43 | 287 | 34 | 263 | 3.98e-96 | 289 |
| MS.gene29494.t1 | MTR_5g095070 | 57.895 | 133 | 46 | 3 | 243 | 366 | 140 | 271 | 1.61e-37 | 137 |
| MS.gene29494.t1 | MTR_1g084150 | 40.000 | 280 | 97 | 4 | 160 | 417 | 1 | 231 | 3.75e-51 | 172 |
| MS.gene29494.t1 | MTR_7g005970 | 25.430 | 291 | 158 | 7 | 69 | 304 | 67 | 353 | 6.39e-14 | 73.6 |
| MS.gene29494.t1 | MTR_4g015240 | 49.254 | 67 | 29 | 1 | 342 | 408 | 39 | 100 | 6.81e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29494.t1 | AT3G13350 | 25.896 | 251 | 148 | 8 | 45 | 261 | 46 | 292 | 8.73e-12 | 66.2 |
Find 78 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCTTCAGTGCTCTTT+TGG | 0.157665 | 5.3:-64702660 | None:intergenic |
| CACTAGTTTATCTCAATTAA+TGG | 0.164628 | 5.3:+64701312 | MS.gene29494:CDS |
| ATTCAAATCACCTGGGAAAA+AGG | 0.184616 | 5.3:-64702818 | None:intergenic |
| AAAGCTGATCATCAGTTTAA+AGG | 0.190474 | 5.3:+64702416 | MS.gene29494:CDS |
| CCAGTTGCAGTTTGAGTTGC+AGG | 0.228640 | 5.3:-64701084 | None:intergenic |
| TCGTAAGCTCACTGAGCTTT+TGG | 0.297529 | 5.3:+64699990 | MS.gene29494:CDS |
| CTCTCAGTGAGGATGTAATA+TGG | 0.355250 | 5.3:-64699961 | None:intergenic |
| TTATATCCACTCTGTCCTAT+TGG | 0.357025 | 5.3:-64702024 | None:intergenic |
| AGAGGAAAGCATGAAGATAA+AGG | 0.358251 | 5.3:+64702615 | MS.gene29494:CDS |
| CGTTCGTTAGATTTGCCAAC+TGG | 0.361646 | 5.3:+64702847 | MS.gene29494:CDS |
| AGTTGTTTCTGCTCTAAAAC+TGG | 0.365684 | 5.3:+64700972 | MS.gene29494:CDS |
| TTCATGCTTTCCTCTTCATA+TGG | 0.373376 | 5.3:-64702607 | None:intergenic |
| TTCACGCTTGCCTCTTCATA+TGG | 0.385956 | 5.3:-64702272 | None:intergenic |
| AGGTTGATCAAGAAAAGAAA+TGG | 0.402611 | 5.3:+64700944 | MS.gene29494:intron |
| AGAGGCAAGCGTGAAGATAA+AGG | 0.407513 | 5.3:+64702280 | MS.gene29494:CDS |
| GTTGTCAGACAAGGAGAAAC+AGG | 0.408256 | 5.3:+64702143 | MS.gene29494:CDS |
| CCTCTGTCAAACTACTCTTT+TGG | 0.416635 | 5.3:+64702739 | MS.gene29494:CDS |
| TTAATTTCATTAATGGAAGA+AGG | 0.420089 | 5.3:+64699841 | None:intergenic |
| GACTACTCTAGTCAAATTAC+AGG | 0.434649 | 5.3:+64701373 | MS.gene29494:CDS |
| CCTGCAACTCAAACTGCAAC+TGG | 0.435997 | 5.3:+64701084 | MS.gene29494:CDS |
| TCGTGACCTCCAAGTAAAAC+AGG | 0.439872 | 5.3:-64700539 | None:intergenic |
| CGATAATCATTCAAATCACC+TGG | 0.440231 | 5.3:-64702826 | None:intergenic |
| TTGAGACATTGTACTTCTAC+AGG | 0.444314 | 5.3:+64701058 | MS.gene29494:CDS |
| ACTGCAACTGGCAGCAATAC+AGG | 0.446573 | 5.3:+64701096 | MS.gene29494:CDS |
| AGGAAAGGAATTAGTAGTGA+TGG | 0.453771 | 5.3:+64699861 | MS.gene29494:CDS |
| TACTTGGAGGTCACGAAAAG+AGG | 0.458176 | 5.3:+64700546 | MS.gene29494:CDS |
| TAGTAGTCACCACACACAAT+AGG | 0.458403 | 5.3:-64702700 | None:intergenic |
| AAACGGAGAGGTGCTCCAAT+AGG | 0.474962 | 5.3:+64702009 | MS.gene29494:CDS |
| TTCATTAATGGAAGAAGGAA+AGG | 0.479210 | 5.3:+64699846 | None:intergenic |
| TATGCACTCTTCTGTCCCCT+TGG | 0.481011 | 5.3:-64702359 | None:intergenic |
| AGAACAAAGAAAAGAAGAAA+CGG | 0.490306 | 5.3:+64701992 | MS.gene29494:CDS |
| TTCATCAATGGAAGAAGCAA+AGG | 0.491657 | 5.3:+64699918 | MS.gene29494:CDS |
| GGTTGATCAAGAAAAGAAAT+GGG | 0.491923 | 5.3:+64700945 | MS.gene29494:intron |
| CTTTATAAGGTCCAGTTGAA+AGG | 0.507012 | 5.3:+64701275 | MS.gene29494:intron |
| AGAAGCAAAGGAATTAGAGA+TGG | 0.514965 | 5.3:+64699930 | MS.gene29494:CDS |
| AGTAAAACAGGTACAAGTCA+AGG | 0.532503 | 5.3:-64700527 | None:intergenic |
| AAATCACGGCTATTGATGCT+TGG | 0.536227 | 5.3:+64702447 | MS.gene29494:CDS |
| TAGAGATGGCTATTGATGCT+TGG | 0.538363 | 5.3:+64702115 | MS.gene29494:CDS |
| TCGACTTAAAGCTTATCATC+AGG | 0.545141 | 5.3:+64702071 | MS.gene29494:CDS |
| CGACAACAAGTATAGTCACT+CGG | 0.548231 | 5.3:-64702875 | None:intergenic |
| GTCTAGCGCATTCATGCTTG+AGG | 0.557923 | 5.3:-64702391 | None:intergenic |
| GTTCGTTAGATTTGCCAACT+GGG | 0.558967 | 5.3:+64702848 | MS.gene29494:CDS |
| AACATGAGATTGAATCCAGA+AGG | 0.564550 | 5.3:-64700015 | None:intergenic |
| GTTTCTGCTCTAAAACTGGA+AGG | 0.575106 | 5.3:+64700976 | MS.gene29494:CDS |
| TTTCATGTAGCCATATGAAG+AGG | 0.580743 | 5.3:+64702262 | MS.gene29494:intron |
| AGTCACTCGGGTTCCCCAGT+TGG | 0.582592 | 5.3:-64702862 | None:intergenic |
| ATATAATATATTCCTCAAGC+AGG | 0.589592 | 5.3:+64702041 | MS.gene29494:CDS |
| GTCGAGCACACTCCTGCTTG+AGG | 0.592986 | 5.3:-64702053 | None:intergenic |
| GAGCACTGAAGATCTTGAGA+GGG | 0.594444 | 5.3:+64702666 | MS.gene29494:CDS |
| AAAGAAAAGAAGAAACATAG+AGG | 0.596397 | 5.3:+64702332 | MS.gene29494:CDS |
| AGAGCACTGAAGATCTTGAG+AGG | 0.596789 | 5.3:+64702665 | MS.gene29494:CDS |
| GAAACATAGAGGTGTTCCAA+GGG | 0.597227 | 5.3:+64702343 | MS.gene29494:CDS |
| AGAAACATAGAGGTGTTCCA+AGG | 0.610697 | 5.3:+64702342 | MS.gene29494:CDS |
| GTAAAACAGGTACAAGTCAA+GGG | 0.610799 | 5.3:-64700526 | None:intergenic |
| TTTCATGTAGCCATATGAAG+AGG | 0.611306 | 5.3:+64702597 | MS.gene29494:intron |
| TTCGTTAGATTTGCCAACTG+GGG | 0.615840 | 5.3:+64702849 | MS.gene29494:CDS |
| CCAAAAGAGTAGTTTGACAG+AGG | 0.617143 | 5.3:-64702739 | None:intergenic |
| GCTTATCATCAGGACGTAGG+TGG | 0.622815 | 5.3:+64702081 | MS.gene29494:CDS |
| GGAATTAGTAGTGATGGAGA+TGG | 0.631774 | 5.3:+64699867 | MS.gene29494:CDS |
| TGGATATCAAGAATTTCAAG+TGG | 0.632369 | 5.3:+64701951 | MS.gene29494:CDS |
| GACAACAAGTATAGTCACTC+GGG | 0.642555 | 5.3:-64702874 | None:intergenic |
| TTGGAGGTCACGAAAAGAGG+AGG | 0.644365 | 5.3:+64700549 | MS.gene29494:CDS |
| GATAATCATTCAAATCACCT+GGG | 0.650646 | 5.3:-64702825 | None:intergenic |
| GGACGAGCAAGATTATCAGA+AGG | 0.655330 | 5.3:+64701333 | MS.gene29494:CDS |
| TTGGAATAAGTTGTCAGACA+AGG | 0.660735 | 5.3:+64702134 | MS.gene29494:CDS |
| AAAGCTCAGTGAGCTTACGA+TGG | 0.661623 | 5.3:-64699987 | None:intergenic |
| ACATGAGATTGAATCCAGAA+GGG | 0.670630 | 5.3:-64700014 | None:intergenic |
| AAAGAAAAGAAGAAACGGAG+AGG | 0.672313 | 5.3:+64701997 | MS.gene29494:CDS |
| AATTTGACTAGAGTAGTCCT+CGG | 0.673968 | 5.3:-64701368 | None:intergenic |
| AAAGCTTATCATCAGGACGT+AGG | 0.684875 | 5.3:+64702078 | MS.gene29494:CDS |
| GGTGCTCCAATAGGACAGAG+TGG | 0.688534 | 5.3:+64702018 | MS.gene29494:CDS |
| CATTAATTGAGATAAACTAG+TGG | 0.690114 | 5.3:-64701311 | None:intergenic |
| GAAGGCAGCAAAGATATCCG+AGG | 0.700751 | 5.3:+64701351 | MS.gene29494:CDS |
| GAAAAGAGGAGGTTATCACC+AGG | 0.701758 | 5.3:+64700560 | MS.gene29494:CDS |
| GTTGATCAAGAAAAGAAATG+GGG | 0.707030 | 5.3:+64700946 | MS.gene29494:CDS |
| AAACATAGAGGTGTTCCAAG+GGG | 0.716007 | 5.3:+64702344 | MS.gene29494:CDS |
| GAAGAGAGACCTATTGTGTG+TGG | 0.716478 | 5.3:+64702691 | MS.gene29494:CDS |
| TACGATGGAAGCTCTCAGTG+AGG | 0.725253 | 5.3:-64699972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATAAGAGTTTTAAATA+TGG | + | chr5.3:64701800-64701819 | MS.gene29494:intron | 10.0% |
| !! | TCATAAAAAAAATACAACTT+TGG | + | chr5.3:64701525-64701544 | MS.gene29494:intron | 15.0% |
| !! | TTGAACAAATAAAACATATT+TGG | - | chr5.3:64700861-64700880 | None:intergenic | 15.0% |
| !! | ACAAATAAAACATATTTGGA+TGG | - | chr5.3:64700857-64700876 | None:intergenic | 20.0% |
| !! | ACATGAAAAGTAATTAGAAA+TGG | - | chr5.3:64702250-64702269 | None:intergenic | 20.0% |
| !! | ACCTTAAATTCTTCTTTATA+AGG | + | chr5.3:64701262-64701281 | MS.gene29494:intron | 20.0% |
| !! | ACCTTATAAAGAAGAATTTA+AGG | - | chr5.3:64701266-64701285 | None:intergenic | 20.0% |
| !!! | AAATGAGATTTTTTCATCAA+TGG | + | chr5.3:64699906-64699925 | MS.gene29494:CDS | 20.0% |
| !!! | ACAATCCAAATTTAGTTTAA+AGG | + | chr5.3:64701892-64701911 | MS.gene29494:intron | 20.0% |
| !!! | AGATATACAATTTTAATGAG+AGG | + | chr5.3:64701402-64701421 | MS.gene29494:intron | 20.0% |
| !!! | AGTTTATAATTTTACTTGAC+TGG | + | chr5.3:64701149-64701168 | MS.gene29494:intron | 20.0% |
| !!! | ATCTCATTTTCATTTTCATA+AGG | - | chr5.3:64699895-64699914 | None:intergenic | 20.0% |
| !!! | ATTATGTTTATGTTGCATTT+TGG | + | chr5.3:64701214-64701233 | MS.gene29494:intron | 20.0% |
| !!! | ATTCTTTTTCATTCAATGAA+TGG | - | chr5.3:64701438-64701457 | None:intergenic | 20.0% |
| !!! | TATGATACTTATTTTGAATC+AGG | - | chr5.3:64701510-64701529 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTTTCTTTGTTAT+TGG | - | chr5.3:64702327-64702346 | None:intergenic | 20.0% |
| ! | AAAGAAAAGAAGAAACATAG+AGG | + | chr5.3:64702332-64702351 | MS.gene29494:CDS | 25.0% |
| ! | AAATACATATAGTAGCAAAC+AGG | - | chr5.3:64701615-64701634 | None:intergenic | 25.0% |
| ! | AATGAGAAAGAGATTAAAGA+AGG | - | chr5.3:64700056-64700075 | None:intergenic | 25.0% |
| ! | ACATGAAATGTAATTACAAG+TGG | - | chr5.3:64702585-64702604 | None:intergenic | 25.0% |
| ! | AGAACAAAGAAAAGAAGAAA+CGG | + | chr5.3:64701992-64702011 | MS.gene29494:CDS | 25.0% |
| ! | ATATAACCAAACAATATACC+TGG | - | chr5.3:64700581-64700600 | None:intergenic | 25.0% |
| ! | ATATAATATATTCCTCAAGC+AGG | + | chr5.3:64702041-64702060 | MS.gene29494:CDS | 25.0% |
| ! | CATATTCGAAAATTCATACA+AGG | - | chr5.3:64700894-64700913 | None:intergenic | 25.0% |
| ! | CATTAATTGAGATAAACTAG+TGG | - | chr5.3:64701314-64701333 | None:intergenic | 25.0% |
| ! | GTAAAACAACCTTATACTTT+CGG | + | chr5.3:64700390-64700409 | MS.gene29494:intron | 25.0% |
| ! | TGTATTTATTATCTGCACTA+TGG | + | chr5.3:64701628-64701647 | MS.gene29494:intron | 25.0% |
| ! | TTCATATTCATTAATTGACG+TGG | - | chr5.3:64700327-64700346 | None:intergenic | 25.0% |
| !! | ATCCAAATTTAGTTTAAAGG+TGG | + | chr5.3:64701895-64701914 | MS.gene29494:intron | 25.0% |
| !! | ATTTGTTGGAAGAGTTTAAA+GGG | + | chr5.3:64701678-64701697 | MS.gene29494:intron | 25.0% |
| !! | CACTAGTTTATCTCAATTAA+TGG | + | chr5.3:64701312-64701331 | MS.gene29494:CDS | 25.0% |
| !! | TATAATTTTACTTGACTGGT+TGG | + | chr5.3:64701153-64701172 | MS.gene29494:intron | 25.0% |
| !! | TTAGTAACTCAATGATTTGT+TGG | + | chr5.3:64701664-64701683 | MS.gene29494:intron | 25.0% |
| !! | TTCTTTTCTTTGTTCTTTGA+GGG | - | chr5.3:64701988-64702007 | None:intergenic | 25.0% |
| !!! | AATGGAAGCTACATATTTTT+TGG | - | chr5.3:64700818-64700837 | None:intergenic | 25.0% |
| !!! | AATGTCTTTTTCTAGTCTAT+TGG | + | chr5.3:64700191-64700210 | MS.gene29494:intron | 25.0% |
| !!! | TTCTTTTCTTTGTTATTGGT+GGG | - | chr5.3:64702323-64702342 | None:intergenic | 25.0% |
| AAAGCTGATCATCAGTTTAA+AGG | + | chr5.3:64702416-64702435 | MS.gene29494:CDS | 30.0% | |
| AGCCACCTTTAAACTAAATT+TGG | - | chr5.3:64701900-64701919 | None:intergenic | 30.0% | |
| CACAATTGATCAATTCACTA+TGG | + | chr5.3:64701556-64701575 | MS.gene29494:intron | 30.0% | |
| CCAAATAGAATTGGAAAAAG+AGG | - | chr5.3:64700483-64700502 | None:intergenic | 30.0% | |
| GAACATGCAAACGAAAAAAA+TGG | - | chr5.3:64700090-64700109 | None:intergenic | 30.0% | |
| GATAATCATTCAAATCACCT+GGG | - | chr5.3:64702828-64702847 | None:intergenic | 30.0% | |
| GGTTGATCAAGAAAAGAAAT+GGG | + | chr5.3:64700945-64700964 | MS.gene29494:intron | 30.0% | |
| GTCATATTCATTAATTGACG+TGG | + | chr5.3:64700357-64700376 | MS.gene29494:intron | 30.0% | |
| GTTGATCAAGAAAAGAAATG+GGG | + | chr5.3:64700946-64700965 | MS.gene29494:CDS | 30.0% | |
| TAAAGAGAATGACATGCAAA+CGG | - | chr5.3:64700133-64700152 | None:intergenic | 30.0% | |
| TCAAAATCTGCAAAGAAATC+TGG | - | chr5.3:64701765-64701784 | None:intergenic | 30.0% | |
| TCAAATCTGCCAAATAGAAT+TGG | - | chr5.3:64700492-64700511 | None:intergenic | 30.0% | |
| TGGAAGAAAAATCATAGAGA+TGG | + | chr5.3:64702101-64702120 | MS.gene29494:CDS | 30.0% | |
| TGGATATCAAGAATTTCAAG+TGG | + | chr5.3:64701951-64701970 | MS.gene29494:CDS | 30.0% | |
| TTATATCCACATTGTTGACA+TGG | + | chr5.3:64700595-64700614 | MS.gene29494:intron | 30.0% | |
| TTATCACCAGGTATATTGTT+TGG | + | chr5.3:64700572-64700591 | MS.gene29494:intron | 30.0% | |
| ! | AGGTTGATCAAGAAAAGAAA+TGG | + | chr5.3:64700944-64700963 | MS.gene29494:intron | 30.0% |
| ! | ATATAGTAGCAAACAGGTTT+TGG | - | chr5.3:64701609-64701628 | None:intergenic | 30.0% |
| ! | CCTCTTTTTCCAATTCTATT+TGG | + | chr5.3:64700480-64700499 | MS.gene29494:intron | 30.0% |
| ! | CTTCTTTTCTTTGTTCTTTG+AGG | - | chr5.3:64701989-64702008 | None:intergenic | 30.0% |
| ! | TCTAGCAAAAAAGTTAGTCT+CGG | + | chr5.3:64700702-64700721 | MS.gene29494:intron | 30.0% |
| !! | GATTTGTTGGAAGAGTTTAA+AGG | + | chr5.3:64701677-64701696 | MS.gene29494:intron | 30.0% |
| !!! | CTTCTTTTCTTTGTTATTGG+TGG | - | chr5.3:64702324-64702343 | None:intergenic | 30.0% |
| !!! | CTTTTCAAGTTGATCACATA+AGG | - | chr5.3:64701013-64701032 | None:intergenic | 30.0% |
| AAAATCAACCATATCGTTGG+TGG | + | chr5.3:64701720-64701739 | MS.gene29494:intron | 35.0% | |
| AAAGAAAAGAAGAAACGGAG+AGG | + | chr5.3:64701997-64702016 | MS.gene29494:CDS | 35.0% | |
| AACATGAGATTGAATCCAGA+AGG | - | chr5.3:64700018-64700037 | None:intergenic | 35.0% | |
| AATTTGACTAGAGTAGTCCT+CGG | - | chr5.3:64701371-64701390 | None:intergenic | 35.0% | |
| ACAATACCATGTCAACAATG+TGG | - | chr5.3:64700604-64700623 | None:intergenic | 35.0% | |
| ACATGAGATTGAATCCAGAA+GGG | - | chr5.3:64700017-64700036 | None:intergenic | 35.0% | |
| AGAAGCAAAGGAATTAGAGA+TGG | + | chr5.3:64699930-64699949 | MS.gene29494:CDS | 35.0% | |
| AGGAAAGGAATTAGTAGTGA+TGG | + | chr5.3:64699861-64699880 | MS.gene29494:CDS | 35.0% | |
| AGTAAAACAGGTACAAGTCA+AGG | - | chr5.3:64700530-64700549 | None:intergenic | 35.0% | |
| ATTCAAATCACCTGGGAAAA+AGG | - | chr5.3:64702821-64702840 | None:intergenic | 35.0% | |
| CGATAATCATTCAAATCACC+TGG | - | chr5.3:64702829-64702848 | None:intergenic | 35.0% | |
| CTTTATAAGGTCCAGTTGAA+AGG | + | chr5.3:64701275-64701294 | MS.gene29494:intron | 35.0% | |
| GACTACTCTAGTCAAATTAC+AGG | + | chr5.3:64701373-64701392 | MS.gene29494:CDS | 35.0% | |
| GATCAATTCACTATGGTCTA+TGG | + | chr5.3:64701563-64701582 | MS.gene29494:intron | 35.0% | |
| GTAAAACAGGTACAAGTCAA+GGG | - | chr5.3:64700529-64700548 | None:intergenic | 35.0% | |
| TAAAGGTGACCGAAAAATCA+CGG | + | chr5.3:64702433-64702452 | MS.gene29494:CDS | 35.0% | |
| TATGTAGCTTCTAACCAACA+AGG | + | chr5.3:64700673-64700692 | MS.gene29494:intron | 35.0% | |
| TCGACTTAAAGCTTATCATC+AGG | + | chr5.3:64702071-64702090 | MS.gene29494:CDS | 35.0% | |
| TGGAAGAGTTTAAAGGGATT+TGG | + | chr5.3:64701684-64701703 | MS.gene29494:intron | 35.0% | |
| TTATATCCACTCTGTCCTAT+TGG | - | chr5.3:64702027-64702046 | None:intergenic | 35.0% | |
| TTCAAATCACCTGGGAAAAA+GGG | - | chr5.3:64702820-64702839 | None:intergenic | 35.0% | |
| TTCATCAATGGAAGAAGCAA+AGG | + | chr5.3:64699918-64699937 | MS.gene29494:CDS | 35.0% | |
| TTCATGCTTTCCTCTTCATA+TGG | - | chr5.3:64702610-64702629 | None:intergenic | 35.0% | |
| TTGAGACATTGTACTTCTAC+AGG | + | chr5.3:64701058-64701077 | MS.gene29494:CDS | 35.0% | |
| TTGCTAGATTCAAACCTTGT+TGG | - | chr5.3:64700690-64700709 | None:intergenic | 35.0% | |
| TTGGAATAAGTTGTCAGACA+AGG | + | chr5.3:64702134-64702153 | MS.gene29494:CDS | 35.0% | |
| TTTCATGTAGCCATATGAAG+AGG | + | chr5.3:64702262-64702281 | MS.gene29494:intron | 35.0% | |
| ! | AGAGGAAAGCATGAAGATAA+AGG | + | chr5.3:64702615-64702634 | MS.gene29494:CDS | 35.0% |
| ! | CATCAATAGCCGTGATTTTT+CGG | - | chr5.3:64702445-64702464 | None:intergenic | 35.0% |
| ! | TAGCATACACCGAAAGTATA+AGG | - | chr5.3:64700402-64700421 | None:intergenic | 35.0% |
| ! | TATCGTACCAGTTTTTCCAT+GGG | - | chr5.3:64702485-64702504 | None:intergenic | 35.0% |
| ! | TTATCGTACCAGTTTTTCCA+TGG | - | chr5.3:64702486-64702505 | None:intergenic | 35.0% |
| ! | TTCGTTTGCATGTTCTGTTT+TGG | + | chr5.3:64700095-64700114 | MS.gene29494:intron | 35.0% |
| !! | ACCAACGATATGGTTGATTT+TGG | - | chr5.3:64701721-64701740 | None:intergenic | 35.0% |
| !! | AGTTGTTTCTGCTCTAAAAC+TGG | + | chr5.3:64700972-64700991 | MS.gene29494:CDS | 35.0% |
| !! | TGACTTGTACCTGTTTTACT+TGG | + | chr5.3:64700530-64700549 | MS.gene29494:CDS | 35.0% |
| !!! | GAGTTTTGATTCCTTTCAAC+TGG | - | chr5.3:64701289-64701308 | None:intergenic | 35.0% |
| !!! | TTTTTTGGTTTCCCACATAC+AGG | - | chr5.3:64700803-64700822 | None:intergenic | 35.0% |
| AAAGCTTATCATCAGGACGT+AGG | + | chr5.3:64702078-64702097 | MS.gene29494:CDS | 40.0% | |
| AAATCACGGCTATTGATGCT+TGG | + | chr5.3:64702447-64702466 | MS.gene29494:CDS | 40.0% | |
| ACTGACAGAAAAAACATCCG+AGG | + | chr5.3:64702792-64702811 | MS.gene29494:CDS | 40.0% | |
| CCAAAAGAGTAGTTTGACAG+AGG | - | chr5.3:64702742-64702761 | None:intergenic | 40.0% | |
| CTCTCAGTGAGGATGTAATA+TGG | - | chr5.3:64699964-64699983 | None:intergenic | 40.0% | |
| CTTTCAAACCACCAACGATA+TGG | - | chr5.3:64701731-64701750 | None:intergenic | 40.0% | |
| GCCAAAATCAACCATATCGT+TGG | + | chr5.3:64701717-64701736 | MS.gene29494:intron | 40.0% | |
| GCTACGTCGAAAACTAAATG+TGG | - | chr5.3:64700763-64700782 | None:intergenic | 40.0% | |
| GGATAAGCTTGATCTGCAAA+TGG | - | chr5.3:64700836-64700855 | None:intergenic | 40.0% | |
| GTTCGTTAGATTTGCCAACT+GGG | + | chr5.3:64702848-64702867 | MS.gene29494:CDS | 40.0% | |
| TAGAGATGGCTATTGATGCT+TGG | + | chr5.3:64702115-64702134 | MS.gene29494:CDS | 40.0% | |
| TAGTAGTCACCACACACAAT+AGG | - | chr5.3:64702703-64702722 | None:intergenic | 40.0% | |
| TGGCAGCAATACAGGTTAAT+TGG | + | chr5.3:64701104-64701123 | MS.gene29494:intron | 40.0% | |
| TTCGTTAGATTTGCCAACTG+GGG | + | chr5.3:64702849-64702868 | MS.gene29494:CDS | 40.0% | |
| TTCTCTTGAATGATTGCTGC+AGG | + | chr5.3:64700924-64700943 | MS.gene29494:intron | 40.0% | |
| ! | ATCGTACCAGTTTTTCCATG+GGG | - | chr5.3:64702484-64702503 | None:intergenic | 40.0% |
| ! | CAAGATCTTCAGTGCTCTTT+TGG | - | chr5.3:64702663-64702682 | None:intergenic | 40.0% |
| ! | CCTCTGTCAAACTACTCTTT+TGG | + | chr5.3:64702739-64702758 | MS.gene29494:CDS | 40.0% |
| ! | CTTGTACCTGTTTTACTTGG+AGG | + | chr5.3:64700533-64700552 | MS.gene29494:CDS | 40.0% |
| ! | GGAATTAGTAGTGATGGAGA+TGG | + | chr5.3:64699867-64699886 | MS.gene29494:CDS | 40.0% |
| !! | AAACATAGAGGTGTTCCAAG+GGG | + | chr5.3:64702344-64702363 | MS.gene29494:CDS | 40.0% |
| !! | AGAAACATAGAGGTGTTCCA+AGG | + | chr5.3:64702342-64702361 | MS.gene29494:CDS | 40.0% |
| !! | GAAACATAGAGGTGTTCCAA+GGG | + | chr5.3:64702343-64702362 | MS.gene29494:CDS | 40.0% |
| !! | GTTTCTGCTCTAAAACTGGA+AGG | + | chr5.3:64700976-64700995 | MS.gene29494:CDS | 40.0% |
| AAAGCTCAGTGAGCTTACGA+TGG | - | chr5.3:64699990-64700009 | None:intergenic | 45.0% | |
| ACAAGGTTTCCTCCTGTATG+TGG | + | chr5.3:64700788-64700807 | MS.gene29494:intron | 45.0% | |
| AGAGGCAAGCGTGAAGATAA+AGG | + | chr5.3:64702280-64702299 | MS.gene29494:CDS | 45.0% | |
| CAAGGTTTCCTCCTGTATGT+GGG | + | chr5.3:64700789-64700808 | MS.gene29494:intron | 45.0% | |
| CGTTCGTTAGATTTGCCAAC+TGG | + | chr5.3:64702847-64702866 | MS.gene29494:CDS | 45.0% | |
| CTCTACGTAGTCAACCACAT+CGG | - | chr5.3:64701852-64701871 | None:intergenic | 45.0% | |
| CTGCAAAGAAATCTGGACTG+CGG | - | chr5.3:64701758-64701777 | None:intergenic | 45.0% | |
| GAAAAGAGGAGGTTATCACC+AGG | + | chr5.3:64700560-64700579 | MS.gene29494:CDS | 45.0% | |
| GAAGAGAGACCTATTGTGTG+TGG | + | chr5.3:64702691-64702710 | MS.gene29494:CDS | 45.0% | |
| GGACGAGCAAGATTATCAGA+AGG | + | chr5.3:64701333-64701352 | MS.gene29494:CDS | 45.0% | |
| GTTGTCAGACAAGGAGAAAC+AGG | + | chr5.3:64702143-64702162 | MS.gene29494:CDS | 45.0% | |
| TACTTGGAGGTCACGAAAAG+AGG | + | chr5.3:64700546-64700565 | MS.gene29494:CDS | 45.0% | |
| TCGTGACCTCCAAGTAAAAC+AGG | - | chr5.3:64700542-64700561 | None:intergenic | 45.0% | |
| TGGTTGACTACGTAGAGTCA+CGG | + | chr5.3:64701855-64701874 | MS.gene29494:intron | 45.0% | |
| TTCACGCTTGCCTCTTCATA+TGG | - | chr5.3:64702275-64702294 | None:intergenic | 45.0% | |
| TTTCGACGTAGCCTCAAACA+AGG | + | chr5.3:64700771-64700790 | MS.gene29494:intron | 45.0% | |
| ! | ACAGGAGGAAACCTTGTTTG+AGG | - | chr5.3:64700785-64700804 | None:intergenic | 45.0% |
| ! | TCGTAAGCTCACTGAGCTTT+TGG | + | chr5.3:64699990-64700009 | MS.gene29494:CDS | 45.0% |
| ! | TCGTACCAGTTTTTCCATGG+GGG | - | chr5.3:64702483-64702502 | None:intergenic | 45.0% |
| ! | TTTGGTTTCCCACATACAGG+AGG | - | chr5.3:64700800-64700819 | None:intergenic | 45.0% |
| !! | AGAGCACTGAAGATCTTGAG+AGG | + | chr5.3:64702665-64702684 | MS.gene29494:CDS | 45.0% |
| !! | GAGCACTGAAGATCTTGAGA+GGG | + | chr5.3:64702666-64702685 | MS.gene29494:CDS | 45.0% |
| !!! | ATTAAACTAATTTTTTTTTA+TGG | + | chr5.3:64700422-64700441 | MS.gene29494:intron | 5.0% |
| AATGTGGACACCACTCTCAG+AGG | - | chr5.3:64700747-64700766 | None:intergenic | 50.0% | |
| ACCTGGGAAAAAGGGATCCT+CGG | - | chr5.3:64702812-64702831 | None:intergenic | 50.0% | |
| ACTGCAACTGGCAGCAATAC+AGG | + | chr5.3:64701096-64701115 | MS.gene29494:CDS | 50.0% | |
| CCTGCAACTCAAACTGCAAC+TGG | + | chr5.3:64701084-64701103 | MS.gene29494:CDS | 50.0% | |
| GAAGGCAGCAAAGATATCCG+AGG | + | chr5.3:64701351-64701370 | MS.gene29494:CDS | 50.0% | |
| GATGTCCCCCATGGAAAAAC+TGG | + | chr5.3:64702475-64702494 | MS.gene29494:CDS | 50.0% | |
| GCTTATCATCAGGACGTAGG+TGG | + | chr5.3:64702081-64702100 | MS.gene29494:CDS | 50.0% | |
| GGTGGCTCATATGAAGTCAG+AGG | + | chr5.3:64701913-64701932 | MS.gene29494:intron | 50.0% | |
| GGTTGACTACGTAGAGTCAC+GGG | + | chr5.3:64701856-64701875 | MS.gene29494:intron | 50.0% | |
| GTCTAGCGCATTCATGCTTG+AGG | - | chr5.3:64702394-64702413 | None:intergenic | 50.0% | |
| GTGGTTCGATCAAGATGGGT+TGG | - | chr5.3:64701827-64701846 | None:intergenic | 50.0% | |
| TACGATGGAAGCTCTCAGTG+AGG | - | chr5.3:64699975-64699994 | None:intergenic | 50.0% | |
| TACGTAGTCAACCACATCGG+TGG | - | chr5.3:64701849-64701868 | None:intergenic | 50.0% | |
| TATGCACTCTTCTGTCCCCT+TGG | - | chr5.3:64702362-64702381 | None:intergenic | 50.0% | |
| TTGGAAGATGATGTCCCCCA+TGG | + | chr5.3:64702466-64702485 | MS.gene29494:CDS | 50.0% | |
| TTGGAGGTCACGAAAAGAGG+AGG | + | chr5.3:64700549-64700568 | MS.gene29494:CDS | 50.0% | |
| ! | ACTGAGCTTTTGGACCCTTC+TGG | + | chr5.3:64700000-64700019 | MS.gene29494:CDS | 50.0% |
| ! | CTCTTTTGGCAACAACGCAG+TGG | + | chr5.3:64702753-64702772 | MS.gene29494:CDS | 50.0% |
| ! | GCTCTAATCTCCTCTGAGAG+TGG | + | chr5.3:64700734-64700753 | MS.gene29494:intron | 50.0% |
| ! | GGTGGTGGTTCGATCAAGAT+GGG | - | chr5.3:64701831-64701850 | None:intergenic | 50.0% |
| ! | TTTTGGCAACAACGCAGTGG+TGG | + | chr5.3:64702756-64702775 | MS.gene29494:CDS | 50.0% |
| !! | AAACGGAGAGGTGCTCCAAT+AGG | + | chr5.3:64702009-64702028 | MS.gene29494:CDS | 50.0% |
| !! | AGAGGTGCTTATGCAGGAGT+TGG | + | chr5.3:64701931-64701950 | MS.gene29494:intron | 50.0% |
| !! | CCAGTTGCAGTTTGAGTTGC+AGG | - | chr5.3:64701087-64701106 | None:intergenic | 50.0% |
| !! | GAAGTCAGAGGTGCTTATGC+AGG | + | chr5.3:64701925-64701944 | MS.gene29494:intron | 50.0% |
| GGTGCTCCAATAGGACAGAG+TGG | + | chr5.3:64702018-64702037 | MS.gene29494:CDS | 55.0% | |
| GTAGTCAACCACATCGGTGG+TGG | - | chr5.3:64701846-64701865 | None:intergenic | 55.0% | |
| TGATCGAACCACCACCGATG+TGG | + | chr5.3:64701835-64701854 | MS.gene29494:intron | 55.0% | |
| ! | CGGTGGTGGTTCGATCAAGA+TGG | - | chr5.3:64701832-64701851 | None:intergenic | 55.0% |
| ! | TCCGAGGATCCCTTTTTCCC+AGG | + | chr5.3:64702808-64702827 | MS.gene29494:CDS | 55.0% |
| GTCGAGCACACTCCTGCTTG+AGG | - | chr5.3:64702056-64702075 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 64699853 | 64702882 | 64699853 | ID=MS.gene29494 |
| chr5.3 | mRNA | 64699853 | 64702882 | 64699853 | ID=MS.gene29494.t1;Parent=MS.gene29494 |
| chr5.3 | exon | 64699853 | 64700034 | 64699853 | ID=MS.gene29494.t1.exon1;Parent=MS.gene29494.t1 |
| chr5.3 | CDS | 64699853 | 64700034 | 64699853 | ID=cds.MS.gene29494.t1;Parent=MS.gene29494.t1 |
| chr5.3 | exon | 64700506 | 64700581 | 64700506 | ID=MS.gene29494.t1.exon2;Parent=MS.gene29494.t1 |
| chr5.3 | CDS | 64700506 | 64700581 | 64700506 | ID=cds.MS.gene29494.t1;Parent=MS.gene29494.t1 |
| chr5.3 | exon | 64700946 | 64701117 | 64700946 | ID=MS.gene29494.t1.exon3;Parent=MS.gene29494.t1 |
| chr5.3 | CDS | 64700946 | 64701117 | 64700946 | ID=cds.MS.gene29494.t1;Parent=MS.gene29494.t1 |
| chr5.3 | exon | 64701284 | 64701394 | 64701284 | ID=MS.gene29494.t1.exon4;Parent=MS.gene29494.t1 |
| chr5.3 | CDS | 64701284 | 64701394 | 64701284 | ID=cds.MS.gene29494.t1;Parent=MS.gene29494.t1 |
| chr5.3 | exon | 64701947 | 64702164 | 64701947 | ID=MS.gene29494.t1.exon5;Parent=MS.gene29494.t1 |
| chr5.3 | CDS | 64701947 | 64702164 | 64701947 | ID=cds.MS.gene29494.t1;Parent=MS.gene29494.t1 |
| chr5.3 | exon | 64702272 | 64702496 | 64702272 | ID=MS.gene29494.t1.exon6;Parent=MS.gene29494.t1 |
| chr5.3 | CDS | 64702272 | 64702496 | 64702272 | ID=cds.MS.gene29494.t1;Parent=MS.gene29494.t1 |
| chr5.3 | exon | 64702607 | 64702882 | 64702607 | ID=MS.gene29494.t1.exon7;Parent=MS.gene29494.t1 |
| chr5.3 | CDS | 64702607 | 64702882 | 64702607 | ID=cds.MS.gene29494.t1;Parent=MS.gene29494.t1 |
| Gene Sequence |
| Protein sequence |
