AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059625


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059625.t1 MTR_6g087760 94.585 831 45 0 8 838 1 831 0.0 1599
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059625.t1 AT3G24630 41.463 205 102 8 8 205 10 203 4.93e-27 118
MS.gene059625.t1 AT3G24630 41.463 205 102 8 8 205 10 203 4.93e-27 118

Find 123 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGTGTCTTCTCTCTTTC+TGG 0.005612 6.2:+87540921 None:intergenic
TTCTGAGACTAAACTTATTT+TGG 0.076991 6.2:-87539036 MS.gene059625:CDS
ATCCAATACAAGACTCTATT+TGG 0.158315 6.2:-87539225 MS.gene059625:CDS
TCAATCTTTGGTAGGATCTT+AGG 0.207375 6.2:+87539260 None:intergenic
TTCAAGATTGCAAATCTCTT+TGG 0.228602 6.2:-87539117 MS.gene059625:CDS
GGAACTTAAGAAAGTGATTA+AGG 0.234384 6.2:-87541276 MS.gene059625:CDS
ATTGCAAAGGATTTGTTAAA+AGG 0.236779 6.2:-87541503 MS.gene059625:CDS
TTTGAACACAATTCAGCTTA+TGG 0.266042 6.2:-87541320 MS.gene059625:CDS
ATTCCATTAGTTTCAATCTT+TGG 0.272555 6.2:+87539248 None:intergenic
GAAAGTGATTAAGGAGAGTT+TGG 0.281612 6.2:-87541267 MS.gene059625:CDS
GCAAATCTCTTTGGGAAGTT+TGG 0.283823 6.2:-87539108 MS.gene059625:CDS
CCACACTCAACAACTCCTTT+TGG 0.288999 6.2:+87541770 None:intergenic
ACCTCGGCGCGCTTCGTATC+AGG 0.299020 6.2:-87540757 MS.gene059625:CDS
CCCTACACAAGTTAGCAATA+AGG 0.311630 6.2:+87539142 None:intergenic
GCAAGAAGCTTCGAATAGTA+TGG 0.317136 6.2:-87541438 MS.gene059625:CDS
CTTCAGAAGTGCTTGTGCTT+TGG 0.319474 6.2:+87541228 None:intergenic
TGCAACAATAGGTTGATAAA+TGG 0.321009 6.2:-87538978 MS.gene059625:CDS
CATCATCAACTGAAGAATTC+TGG 0.321444 6.2:+87539519 None:intergenic
CCTACACAAGTTAGCAATAA+GGG 0.324395 6.2:+87539143 None:intergenic
ACAATAGGTTTAGCTGCTTC+AGG 0.328588 6.2:+87540165 None:intergenic
GATTGACTTGAGCTTGTAGA+AGG 0.330319 6.2:+87541179 None:intergenic
TGAACCTTCCCTTGGTTTGA+AGG 0.332725 6.2:+87540653 None:intergenic
CAAGTCAATCTTCTGTTGTT+TGG 0.332774 6.2:-87541166 MS.gene059625:CDS
GAGTTTCTCAATCTTGATAT+TGG 0.338989 6.2:-87539287 MS.gene059625:CDS
CGAAGCCTGTGCTCTCTAAT+AGG 0.344717 6.2:+87540852 None:intergenic
GATGAAATGCTCTTTCTAGA+TGG 0.352127 6.2:+87540288 None:intergenic
AGCTCAGAAGTGTCTTTGTC+TGG 0.357390 6.2:+87539356 None:intergenic
CTACCAAAGATTGAAACTAA+TGG 0.362800 6.2:-87539251 MS.gene059625:CDS
TCAAGATTGCAAATCTCTTT+GGG 0.367770 6.2:-87539116 MS.gene059625:CDS
CTCAAGATCAAGGCGAAATC+AGG 0.377524 6.2:-87540371 MS.gene059625:CDS
CTTGAAACTACTCATTTCAA+TGG 0.383813 6.2:-87540891 MS.gene059625:CDS
TCCATCTTCTTTGCAGCTTG+TGG 0.385624 6.2:-87541609 MS.gene059625:CDS
GTCTTTGTCTGGCTCGAAAT+CGG 0.387248 6.2:+87539367 None:intergenic
CAATCTTGTTGCAAGGTTGA+TGG 0.390483 6.2:-87541084 MS.gene059625:CDS
TCTGTGACAGAATATTTCTA+AGG 0.402815 6.2:-87541831 None:intergenic
CACAAGCACTTCTGAAGGAT+TGG 0.417407 6.2:-87541222 MS.gene059625:CDS
ATGGTCAATAAATGATTTGC+TGG 0.418671 6.2:+87539316 None:intergenic
GAAAACTCTTCTCGAGGAAC+CGG 0.426957 6.2:+87540714 None:intergenic
GTGGAAGTCTGAGGAGATAT+AGG 0.427056 6.2:-87541751 MS.gene059625:CDS
GAACTATGCTTTCTTACCTT+CGG 0.429427 6.2:+87540957 None:intergenic
GAGATATGAAGTGCAACAAT+AGG 0.438346 6.2:-87538989 MS.gene059625:CDS
TGTTTGGTATGACAAACTTT+CGG 0.440918 6.2:-87541150 MS.gene059625:CDS
ATCCAAATAGAGTCTTGTAT+TGG 0.447170 6.2:+87539223 None:intergenic
TCAATCCTCGACACACTTCG+CGG 0.449222 6.2:+87540324 None:intergenic
CAAGAAGAAGGAATGAGTTT+CGG 0.458989 6.2:-87539999 MS.gene059625:CDS
TTTAGAAATCCAAAAGCAAA+AGG 0.462194 6.2:-87540690 MS.gene059625:CDS
CAGAAAGAGAGAAGACACTA+AGG 0.462255 6.2:-87540920 MS.gene059625:CDS
AATTGTAATGTTCTTTACCT+TGG 0.464078 6.2:+87540446 None:intergenic
ACAGATGGAAATGTTCTTGA+AGG 0.464421 6.2:+87541047 None:intergenic
TTGGTAGTTGAACCTTCCCT+TGG 0.465370 6.2:+87540645 None:intergenic
AATCTTGTTGCAAGGTTGAT+GGG 0.467441 6.2:-87541083 MS.gene059625:CDS
GGATCATCACATGTCACAAA+TGG 0.467560 6.2:+87541791 None:intergenic
GGATAATATTTGTGCAATGT+TGG 0.470489 6.2:-87539015 MS.gene059625:CDS
CATCAACCTTGCAACAAGAT+TGG 0.470581 6.2:+87541085 None:intergenic
CCCTTATTGCTAACTTGTGT+AGG 0.479938 6.2:-87539143 MS.gene059625:CDS
CAAATCCTTTGCAATATCAT+CGG 0.484517 6.2:+87541511 None:intergenic
CTAACTGTGATGACTCTTGA+AGG 0.485315 6.2:+87539171 None:intergenic
ATCTTCTTTGCAGCTTGTGG+AGG 0.488367 6.2:-87541606 MS.gene059625:CDS
ATTGATGCAAATGTGAATGA+TGG 0.489421 6.2:-87541371 MS.gene059625:CDS
CAACATGAGAAAAGAGATGA+TGG 0.491361 6.2:-87540625 MS.gene059625:CDS
GTCAAATTCTCACAAAATGA+AGG 0.492656 6.2:-87541729 MS.gene059625:CDS
AAAGAAGAGAAGGTATCAAA+AGG 0.495584 6.2:-87541653 MS.gene059625:CDS
TCCACAAGCTGCAAAGAAGA+TGG 0.495903 6.2:+87541608 None:intergenic
CCTTATTGCTAACTTGTGTA+GGG 0.510663 6.2:-87539142 MS.gene059625:CDS
CATTAGTTTCAATCTTTGGT+AGG 0.513835 6.2:+87539252 None:intergenic
TAAGACAAAGTGCCGAAAGC+CGG 0.516544 6.2:-87541705 MS.gene059625:CDS
ATGGAATGTGGAACTGTGGT+TGG 0.517006 6.2:-87538959 MS.gene059625:CDS
CACAAAACCAAAGACACAAA+AGG 0.518586 6.2:-87540247 MS.gene059625:CDS
CGAGGTTTCATGAGTACAAT+CGG 0.522887 6.2:+87540774 None:intergenic
TCTCAGAAAACCGATACAAA+AGG 0.524589 6.2:-87540424 MS.gene059625:CDS
ACCTCTAGTCTTATTTGCAT+AGG 0.528727 6.2:+87539893 None:intergenic
CAGCTTGTGGAGGTCTCTAG+AGG 0.534580 6.2:-87541596 MS.gene059625:CDS
GTGGCAAAAGCTCAAGATCA+AGG 0.536217 6.2:-87540381 MS.gene059625:CDS
GTAGTCCTATTAGAGAGCAC+AGG 0.539680 6.2:-87540857 MS.gene059625:CDS
TTTGCAGATAATTGCGAGGA+GGG 0.540057 6.2:-87539542 MS.gene059625:intron
TGGAACTGTGGTTGGAGGCA+TGG 0.542412 6.2:-87538951 MS.gene059625:CDS
CAGATGGAAATGTTCTTGAA+GGG 0.547681 6.2:+87541048 None:intergenic
CAAAGCACAAGCACTTCTGA+AGG 0.559925 6.2:-87541227 MS.gene059625:CDS
GTCTCTAGAGATGCTTCGTA+AGG 0.563353 6.2:-87541462 MS.gene059625:CDS
ACGAGCTTCCTCAGCAAGGA+TGG 0.565299 6.2:+87539463 None:intergenic
AAAGTACCAATCTTGTTGCA+AGG 0.570805 6.2:-87541091 MS.gene059625:CDS
TAAACAAGACAAAGAAGAGA+AGG 0.573687 6.2:-87541663 MS.gene059625:CDS
AGATGGAAATGTTCTTGAAG+GGG 0.581235 6.2:+87541049 None:intergenic
CAAGAAGCTTCGAATAGTAT+GGG 0.582027 6.2:-87541437 MS.gene059625:CDS
ATGATTGAGTCGTGGTCTAG+AGG 0.582241 6.2:-87541554 MS.gene059625:CDS
ATATGATGTGAAAGAAATCA+AGG 0.588240 6.2:-87540538 MS.gene059625:CDS
ATTGACTTGAGCTTGTAGAA+GGG 0.591382 6.2:+87541180 None:intergenic
ACAAAAGGTTAACAGTTCAA+AGG 0.591951 6.2:-87540232 MS.gene059625:CDS
AAAACCTTCAAACCAAGGGA+AGG 0.592501 6.2:-87540657 MS.gene059625:CDS
ATTGCTGACACCGTCTGTAT+CGG 0.594229 6.2:-87539395 MS.gene059625:CDS
GAAACAAGTTTCACTGACGC+TGG 0.594603 6.2:+87539433 None:intergenic
GGTGTGTCAATCTCGAACAC+AGG 0.598187 6.2:+87540978 None:intergenic
CTAAAGGAAAACTCTTCTCG+AGG 0.598786 6.2:+87540708 None:intergenic
ATAGGTTGATAAATGGAATG+TGG 0.600587 6.2:-87538971 MS.gene059625:CDS
TCTAGAGGTGTGAGGTACGA+TGG 0.603601 6.2:-87541539 MS.gene059625:CDS
CTCTTCAAGTAGTTGTAGAG+AGG 0.610288 6.2:-87541297 MS.gene059625:CDS
GAATGTGGAACTGTGGTTGG+AGG 0.612560 6.2:-87538956 MS.gene059625:CDS
AGAAAGAGAGAAGACACTAA+GGG 0.612920 6.2:-87540919 MS.gene059625:CDS
GATTGAGAAACTCATCTGCA+TGG 0.613355 6.2:+87539297 None:intergenic
AAAATCCGATGATATTGCAA+AGG 0.617942 6.2:-87541516 MS.gene059625:CDS
CAAGGCTGTTGAAAGCAAGA+AGG 0.619477 6.2:-87540520 MS.gene059625:CDS
TCGATTGAAGAGAAGACAAG+AGG 0.624969 6.2:-87541414 MS.gene059625:CDS
CAGAAAACCGATACAAAAGG+AGG 0.626337 6.2:-87540421 MS.gene059625:CDS
GTGACATGTGATGATCCAAA+AGG 0.628008 6.2:-87541785 MS.gene059625:CDS
CCAAAAGGAGTTGTTGAGTG+TGG 0.631426 6.2:-87541770 MS.gene059625:CDS
GTTCGTAGAAACGTACGAGC+CGG 0.631601 6.2:-87540733 MS.gene059625:CDS
ACCTATGCAAATAAGACTAG+AGG 0.635482 6.2:-87539894 MS.gene059625:intron
CTACACAAGTTAGCAATAAG+GGG 0.636387 6.2:+87539144 None:intergenic
GAAAGCCGCGAAGTGTGTCG+AGG 0.637298 6.2:-87540329 MS.gene059625:CDS
CGATTGTACTCATGAAACCT+CGG 0.638305 6.2:-87540773 MS.gene059625:CDS
TCCTGATACGAAGCGCGCCG+AGG 0.641562 6.2:+87540756 None:intergenic
AAATGATACCATCCTTGCTG+AGG 0.642227 6.2:-87539471 MS.gene059625:CDS
TTGTTGAGTGTGGAAGTCTG+AGG 0.647195 6.2:-87541760 MS.gene059625:CDS
GGTTTCAAAAGCTAAAATTG+TGG 0.654649 6.2:-87540400 MS.gene059625:CDS
TGTCACGAGCTTCCTCAGCA+AGG 0.661150 6.2:+87539459 None:intergenic
ATCGGTTTCACCGATACAGA+CGG 0.665581 6.2:+87539385 None:intergenic
ATAAATGGAATGTGGAACTG+TGG 0.666233 6.2:-87538963 MS.gene059625:CDS
TGAACAACATGATTGAGTCG+TGG 0.687574 6.2:-87541562 MS.gene059625:CDS
GTTCGAGATTGACACACCGA+AGG 0.719145 6.2:-87540973 MS.gene059625:CDS
AGTCGTGGTCTAGAGGTGTG+AGG 0.724136 6.2:-87541547 MS.gene059625:CDS
GGTTTCATGAGTACAATCGG+TGG 0.732087 6.2:+87540777 None:intergenic
ACAAGTTTCACTGACGCTGG+TGG 0.738203 6.2:+87539436 None:intergenic
AGTAACAGAAGATCTCATCG+TGG 0.778770 6.2:-87539931 MS.gene059625:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTGTCTCTAAATTTT+CGG + chr6.2:87539002-87539021 None:intergenic 15.0%
!! ATTATACTATTTATCCAAAC+AGG + chr6.2:87540848-87540867 None:intergenic 20.0%
!! CATATAAGTTCTTATGTATA+TGG - chr6.2:87540894-87540913 MS.gene059625:CDS 20.0%
!! TTATACTATTTATCCAAACA+GGG + chr6.2:87540847-87540866 None:intergenic 20.0%
!!! TAAATTTCTAAAATTGTCAC+TGG - chr6.2:87540810-87540829 MS.gene059625:CDS 20.0%
!!! TCATTTTTTTTTTGTCTCTA+TGG - chr6.2:87540550-87540569 MS.gene059625:CDS 20.0%
! AATGAATTGAAACTCATTGA+AGG + chr6.2:87540633-87540652 None:intergenic 25.0%
! AATTGTAATGTTCTTTACCT+TGG + chr6.2:87540238-87540257 None:intergenic 25.0%
! ATATGATGTGAAAGAAATCA+AGG - chr6.2:87540143-87540162 MS.gene059625:intron 25.0%
! ATCCAAAAAGTTTATCAAAG+AGG - chr6.2:87540089-87540108 MS.gene059625:intron 25.0%
! ATGACAGTAAAACTTACAAT+AGG + chr6.2:87540534-87540553 None:intergenic 25.0%
! GAAAAATTAAAGCAAGAAGA+AGG - chr6.2:87540670-87540689 MS.gene059625:CDS 25.0%
! TATCATCACACTGAATAAAT+TGG - chr6.2:87541091-87541110 MS.gene059625:CDS 25.0%
! TATCTTGCATAAAAGAGTTT+AGG - chr6.2:87540599-87540618 MS.gene059625:CDS 25.0%
! TGCTTCTAATAATCTAACAA+GGG + chr6.2:87541067-87541086 None:intergenic 25.0%
! TTTAGAAATCCAAAAGCAAA+AGG - chr6.2:87539991-87540010 MS.gene059625:CDS 25.0%
!! ATTCCATTAGTTTCAATCTT+TGG + chr6.2:87541436-87541455 None:intergenic 25.0%
!! GAAGTAGAAAACATGATTTT+AGG - chr6.2:87541787-87541806 MS.gene059625:CDS 25.0%
!!! ATTGCAAAGGATTTGTTAAA+AGG - chr6.2:87539178-87539197 MS.gene059625:CDS 25.0%
!!! TTCTGAGACTAAACTTATTT+TGG - chr6.2:87541645-87541664 MS.gene059625:CDS 25.0%
!!! TTTTGCTTTTGGATTTCTAA+AGG + chr6.2:87539992-87540011 None:intergenic 25.0%
AAAATCCGATGATATTGCAA+AGG - chr6.2:87539165-87539184 MS.gene059625:CDS 30.0%
AATTCATTATTCTTGTGCAC+AGG - chr6.2:87540645-87540664 MS.gene059625:CDS 30.0%
ACAAAAGGTTAACAGTTCAA+AGG - chr6.2:87540449-87540468 MS.gene059625:CDS 30.0%
ATCCAATACAAGACTCTATT+TGG - chr6.2:87541456-87541475 MS.gene059625:CDS 30.0%
ATCTGTTATGCAAAAACAGT+CGG - chr6.2:87539651-87539670 MS.gene059625:intron 30.0%
ATTGATGCAAATGTGAATGA+TGG - chr6.2:87539310-87539329 MS.gene059625:CDS 30.0%
CAAATCCTTTGCAATATCAT+CGG + chr6.2:87539173-87539192 None:intergenic 30.0%
CTACCAAAGATTGAAACTAA+TGG - chr6.2:87541430-87541449 MS.gene059625:CDS 30.0%
CTTGAAACTACTCATTTCAA+TGG - chr6.2:87539790-87539809 MS.gene059625:intron 30.0%
GAGTTTCTCAATCTTGATAT+TGG - chr6.2:87541394-87541413 MS.gene059625:CDS 30.0%
GGAACTTAAGAAAGTGATTA+AGG - chr6.2:87539405-87539424 MS.gene059625:CDS 30.0%
GGATAATATTTGTGCAATGT+TGG - chr6.2:87541666-87541685 MS.gene059625:CDS 30.0%
GGTTTCAAAAGCTAAAATTG+TGG - chr6.2:87540281-87540300 MS.gene059625:CDS 30.0%
GTCAAATTCTCACAAAATGA+AGG - chr6.2:87538952-87538971 MS.gene059625:CDS 30.0%
GTGCTTCTAATAATCTAACA+AGG + chr6.2:87541068-87541087 None:intergenic 30.0%
TAAACAAGACAAAGAAGAGA+AGG - chr6.2:87539018-87539037 MS.gene059625:CDS 30.0%
TCAAGATTGCAAATCTCTTT+GGG - chr6.2:87541565-87541584 MS.gene059625:CDS 30.0%
TGTTTGGTATGACAAACTTT+CGG - chr6.2:87539531-87539550 MS.gene059625:CDS 30.0%
TTCAAAAACCTTCAAACCAA+GGG - chr6.2:87540020-87540039 MS.gene059625:intron 30.0%
TTCAAGATTGCAAATCTCTT+TGG - chr6.2:87541564-87541583 MS.gene059625:CDS 30.0%
TTTGAACACAATTCAGCTTA+TGG - chr6.2:87539361-87539380 MS.gene059625:CDS 30.0%
! ATCCAAATAGAGTCTTGTAT+TGG + chr6.2:87541461-87541480 None:intergenic 30.0%
! ATGGTCAATAAATGATTTGC+TGG + chr6.2:87541368-87541387 None:intergenic 30.0%
! CATTAGTTTCAATCTTTGGT+AGG + chr6.2:87541432-87541451 None:intergenic 30.0%
! CTCCTCTTTGATAAACTTTT+TGG + chr6.2:87540094-87540113 None:intergenic 30.0%
! GTAGAAAACATGATTTTAGG+TGG - chr6.2:87541790-87541809 MS.gene059625:CDS 30.0%
! TTTTCCTTCCTTGAAAAAGT+TGG + chr6.2:87539571-87539590 None:intergenic 30.0%
!! AAAGAAGAGAAGGTATCAAA+AGG - chr6.2:87539028-87539047 MS.gene059625:CDS 30.0%
!! ATAGGTTGATAAATGGAATG+TGG - chr6.2:87541710-87541729 MS.gene059625:CDS 30.0%
!! TGCAACAATAGGTTGATAAA+TGG - chr6.2:87541703-87541722 MS.gene059625:CDS 30.0%
!! TTTGAAACCTCCTTTTGTAT+CGG + chr6.2:87540270-87540289 None:intergenic 30.0%
!!! GATTTTAGGTGGATTAATTG+AGG - chr6.2:87541801-87541820 MS.gene059625:CDS 30.0%
AATTGTCACTGGATACACTT+TGG - chr6.2:87540821-87540840 MS.gene059625:CDS 35.0%
ACAGATGGAAATGTTCTTGA+AGG + chr6.2:87539637-87539656 None:intergenic 35.0%
ACCTATGCAAATAAGACTAG+AGG - chr6.2:87540787-87540806 MS.gene059625:CDS 35.0%
AGAAAGAGAGAAGACACTAA+GGG - chr6.2:87539762-87539781 MS.gene059625:intron 35.0%
AGATGGAAATGTTCTTGAAG+GGG + chr6.2:87539635-87539654 None:intergenic 35.0%
ATAAATGGAATGTGGAACTG+TGG - chr6.2:87541718-87541737 MS.gene059625:CDS 35.0%
CAACATGAGAAAAGAGATGA+TGG - chr6.2:87540056-87540075 MS.gene059625:intron 35.0%
CAAGAAGAAGGAATGAGTTT+CGG - chr6.2:87540682-87540701 MS.gene059625:CDS 35.0%
CAAGAAGCTTCGAATAGTAT+GGG - chr6.2:87539244-87539263 MS.gene059625:CDS 35.0%
CAAGTCAATCTTCTGTTGTT+TGG - chr6.2:87539515-87539534 MS.gene059625:CDS 35.0%
CACAAAACCAAAGACACAAA+AGG - chr6.2:87540434-87540453 MS.gene059625:CDS 35.0%
CAGATGGAAATGTTCTTGAA+GGG + chr6.2:87539636-87539655 None:intergenic 35.0%
CATCATCAACTGAAGAATTC+TGG + chr6.2:87541165-87541184 None:intergenic 35.0%
CCTACACAAGTTAGCAATAA+GGG + chr6.2:87541541-87541560 None:intergenic 35.0%
CTACACAAGTTAGCAATAAG+GGG + chr6.2:87541540-87541559 None:intergenic 35.0%
CTTCAAAAACCTTCAAACCA+AGG - chr6.2:87540019-87540038 MS.gene059625:intron 35.0%
GAAAGTGATTAAGGAGAGTT+TGG - chr6.2:87539414-87539433 MS.gene059625:CDS 35.0%
GAACTATGCTTTCTTACCTT+CGG + chr6.2:87539727-87539746 None:intergenic 35.0%
GAGATATGAAGTGCAACAAT+AGG - chr6.2:87541692-87541711 MS.gene059625:CDS 35.0%
GATGAAATGCTCTTTCTAGA+TGG + chr6.2:87540396-87540415 None:intergenic 35.0%
TCAATCTTTGGTAGGATCTT+AGG + chr6.2:87541424-87541443 None:intergenic 35.0%
TCTCAGAAAACCGATACAAA+AGG - chr6.2:87540257-87540276 MS.gene059625:CDS 35.0%
! AAAGTACCAATCTTGTTGCA+AGG - chr6.2:87539590-87539609 MS.gene059625:intron 35.0%
! AATCTTGTTGCAAGGTTGAT+GGG - chr6.2:87539598-87539617 MS.gene059625:intron 35.0%
! CATCATCTCTTTTCTCATGT+TGG + chr6.2:87540058-87540077 None:intergenic 35.0%
! CCTTATTGCTAACTTGTGTA+GGG - chr6.2:87541539-87541558 MS.gene059625:CDS 35.0%
! CTGTTAACCTTTTGTGTCTT+TGG + chr6.2:87540444-87540463 None:intergenic 35.0%
! TAATCTAACAAGGGCATGTT+TGG + chr6.2:87541058-87541077 None:intergenic 35.0%
! TTTGTCTCTAAATTTTCGGC+CGG + chr6.2:87538998-87539017 None:intergenic 35.0%
!! AACAGTTGATGAAAAAGCCA+AGG - chr6.2:87540218-87540237 MS.gene059625:CDS 35.0%
!! ACCTCTAGTCTTATTTGCAT+AGG + chr6.2:87540791-87540810 None:intergenic 35.0%
!! ATTGACTTGAGCTTGTAGAA+GGG + chr6.2:87539504-87539523 None:intergenic 35.0%
!! CTTGGTTTGAAGGTTTTTGA+AGG + chr6.2:87540021-87540040 None:intergenic 35.0%
!!! CATGTTCACCAACTTTTTCA+AGG - chr6.2:87539560-87539579 MS.gene059625:intron 35.0%
!!! GACTGTTTTTGCATAACAGA+TGG + chr6.2:87539652-87539671 None:intergenic 35.0%
!!! TTCACCAACTTTTTCAAGGA+AGG - chr6.2:87539564-87539583 MS.gene059625:intron 35.0%
!!! TTGTGTCTTTGGTTTTGTGA+TGG + chr6.2:87540433-87540452 None:intergenic 35.0%
AAAACCTTCAAACCAAGGGA+AGG - chr6.2:87540024-87540043 MS.gene059625:intron 40.0%
AAATGATACCATCCTTGCTG+AGG - chr6.2:87541210-87541229 MS.gene059625:CDS 40.0%
ACAATAGGTTTAGCTGCTTC+AGG + chr6.2:87540519-87540538 None:intergenic 40.0%
AGTAACAGAAGATCTCATCG+TGG - chr6.2:87540750-87540769 MS.gene059625:CDS 40.0%
CAATCTTGTTGCAAGGTTGA+TGG - chr6.2:87539597-87539616 MS.gene059625:intron 40.0%
CAGAAAACCGATACAAAAGG+AGG - chr6.2:87540260-87540279 MS.gene059625:CDS 40.0%
CAGAAAGAGAGAAGACACTA+AGG - chr6.2:87539761-87539780 MS.gene059625:intron 40.0%
CATCAACCTTGCAACAAGAT+TGG + chr6.2:87539599-87539618 None:intergenic 40.0%
CCCTACACAAGTTAGCAATA+AGG + chr6.2:87541542-87541561 None:intergenic 40.0%
CCTCGCAATTATCTGCAAAA+GGG + chr6.2:87541138-87541157 None:intergenic 40.0%
CGAGGTTTCATGAGTACAAT+CGG + chr6.2:87539910-87539929 None:intergenic 40.0%
CGATTGTACTCATGAAACCT+CGG - chr6.2:87539908-87539927 MS.gene059625:CDS 40.0%
CTAAAGGAAAACTCTTCTCG+AGG + chr6.2:87539976-87539995 None:intergenic 40.0%
CTAACTGTGATGACTCTTGA+AGG + chr6.2:87541513-87541532 None:intergenic 40.0%
CTCTTCAAGTAGTTGTAGAG+AGG - chr6.2:87539384-87539403 MS.gene059625:CDS 40.0%
CTTAGTGTCTTCTCTCTTTC+TGG + chr6.2:87539763-87539782 None:intergenic 40.0%
GATTGAGAAACTCATCTGCA+TGG + chr6.2:87541387-87541406 None:intergenic 40.0%
GCAAGAAGCTTCGAATAGTA+TGG - chr6.2:87539243-87539262 MS.gene059625:CDS 40.0%
GGATCATCACATGTCACAAA+TGG + chr6.2:87538893-87538912 None:intergenic 40.0%
GTCGATGAGCATCTCATAAA+CGG - chr6.2:87540989-87541008 MS.gene059625:CDS 40.0%
GTGACATGTGATGATCCAAA+AGG - chr6.2:87538896-87538915 MS.gene059625:CDS 40.0%
TCCTCGCAATTATCTGCAAA+AGG + chr6.2:87541139-87541158 None:intergenic 40.0%
TCGATTGAAGAGAAGACAAG+AGG - chr6.2:87539267-87539286 MS.gene059625:CDS 40.0%
TGAACAACATGATTGAGTCG+TGG - chr6.2:87539119-87539138 MS.gene059625:CDS 40.0%
TTTGCAGATAATTGCGAGGA+GGG - chr6.2:87541139-87541158 MS.gene059625:CDS 40.0%
! CCCTTATTGCTAACTTGTGT+AGG - chr6.2:87541538-87541557 MS.gene059625:CDS 40.0%
! GAAGGAACTCCTTTTGCTTT+TGG + chr6.2:87540003-87540022 None:intergenic 40.0%
! GCAAATCTCTTTGGGAAGTT+TGG - chr6.2:87541573-87541592 MS.gene059625:CDS 40.0%
! TTTTGCAGATAATTGCGAGG+AGG - chr6.2:87541138-87541157 MS.gene059625:CDS 40.0%
!! GATTGACTTGAGCTTGTAGA+AGG + chr6.2:87539505-87539524 None:intergenic 40.0%
ATCTTCTTTGCAGCTTGTGG+AGG - chr6.2:87539075-87539094 MS.gene059625:CDS 45.0%
ATGATTGAGTCGTGGTCTAG+AGG - chr6.2:87539127-87539146 MS.gene059625:CDS 45.0%
ATGGAATGTGGAACTGTGGT+TGG - chr6.2:87541722-87541741 MS.gene059625:CDS 45.0%
ATTGCTGACACCGTCTGTAT+CGG - chr6.2:87541286-87541305 MS.gene059625:CDS 45.0%
CAAAGCACAAGCACTTCTGA+AGG - chr6.2:87539454-87539473 MS.gene059625:CDS 45.0%
CAAGGCTGTTGAAAGCAAGA+AGG - chr6.2:87540161-87540180 MS.gene059625:intron 45.0%
CCAAAAGGAGTTGTTGAGTG+TGG - chr6.2:87538911-87538930 MS.gene059625:CDS 45.0%
CTCAAGATCAAGGCGAAATC+AGG - chr6.2:87540310-87540329 MS.gene059625:CDS 45.0%
GAAAACTCTTCTCGAGGAAC+CGG + chr6.2:87539970-87539989 None:intergenic 45.0%
GAAACAAGTTTCACTGACGC+TGG + chr6.2:87541251-87541270 None:intergenic 45.0%
GGTTTCATGAGTACAATCGG+TGG + chr6.2:87539907-87539926 None:intergenic 45.0%
GTGGAAGTCTGAGGAGATAT+AGG - chr6.2:87538930-87538949 MS.gene059625:CDS 45.0%
GTGGCAAAAGCTCAAGATCA+AGG - chr6.2:87540300-87540319 MS.gene059625:CDS 45.0%
TCCACAAGCTGCAAAGAAGA+TGG + chr6.2:87539076-87539095 None:intergenic 45.0%
TCCATCTTCTTTGCAGCTTG+TGG - chr6.2:87539072-87539091 MS.gene059625:CDS 45.0%
TTGTTGAGTGTGGAAGTCTG+AGG - chr6.2:87538921-87538940 MS.gene059625:CDS 45.0%
! ATCGGTTTCACCGATACAGA+CGG + chr6.2:87541299-87541318 None:intergenic 45.0%
! CACAAGCACTTCTGAAGGAT+TGG - chr6.2:87539459-87539478 MS.gene059625:CDS 45.0%
! CCACACTCAACAACTCCTTT+TGG + chr6.2:87538914-87538933 None:intergenic 45.0%
! CCCTTTTGCAGATAATTGCG+AGG - chr6.2:87541135-87541154 MS.gene059625:CDS 45.0%
! GTAGTCCTATTAGAGAGCAC+AGG - chr6.2:87539824-87539843 MS.gene059625:intron 45.0%
! GTCTCTAGAGATGCTTCGTA+AGG - chr6.2:87539219-87539238 MS.gene059625:CDS 45.0%
! GTCTTTGTCTGGCTCGAAAT+CGG + chr6.2:87541317-87541336 None:intergenic 45.0%
! TGAACCTTCCCTTGGTTTGA+AGG + chr6.2:87540031-87540050 None:intergenic 45.0%
! TTGGTAGTTGAACCTTCCCT+TGG + chr6.2:87540039-87540058 None:intergenic 45.0%
!! AGCTCAGAAGTGTCTTTGTC+TGG + chr6.2:87541328-87541347 None:intergenic 45.0%
!! CTAAATTTTCGGCCGGCTTT+CGG + chr6.2:87538991-87539010 None:intergenic 45.0%
!! CTTCAGAAGTGCTTGTGCTT+TGG + chr6.2:87539456-87539475 None:intergenic 45.0%
!! TAAGACAAAGTGCCGAAAGC+CGG - chr6.2:87538976-87538995 MS.gene059625:CDS 45.0%
ACAAGTTTCACTGACGCTGG+TGG + chr6.2:87541248-87541267 None:intergenic 50.0%
CGAAGCCTGTGCTCTCTAAT+AGG + chr6.2:87539832-87539851 None:intergenic 50.0%
GAATGTGGAACTGTGGTTGG+AGG - chr6.2:87541725-87541744 MS.gene059625:CDS 50.0%
GGATACACTTTGGCCCTGTT+TGG - chr6.2:87540831-87540850 MS.gene059625:CDS 50.0%
GGTGTGTCAATCTCGAACAC+AGG + chr6.2:87539706-87539725 None:intergenic 50.0%
GTTCGAGATTGACACACCGA+AGG - chr6.2:87539708-87539727 MS.gene059625:intron 50.0%
GTTCGTAGAAACGTACGAGC+CGG - chr6.2:87539948-87539967 MS.gene059625:CDS 50.0%
TCAATCCTCGACACACTTCG+CGG + chr6.2:87540360-87540379 None:intergenic 50.0%
! GAAGCGCGTCAACGAGTTTT+TGG - chr6.2:87540119-87540138 MS.gene059625:intron 50.0%
! TCTAGAGGTGTGAGGTACGA+TGG - chr6.2:87539142-87539161 MS.gene059625:CDS 50.0%
ACGAGCTTCCTCAGCAAGGA+TGG + chr6.2:87541221-87541240 None:intergenic 55.0%
CAGCTTGTGGAGGTCTCTAG+AGG - chr6.2:87539085-87539104 MS.gene059625:CDS 55.0%
TGGAACTGTGGTTGGAGGCA+TGG - chr6.2:87541730-87541749 MS.gene059625:CDS 55.0%
TGTCACGAGCTTCCTCAGCA+AGG + chr6.2:87541225-87541244 None:intergenic 55.0%
! AGTCGTGGTCTAGAGGTGTG+AGG - chr6.2:87539134-87539153 MS.gene059625:CDS 55.0%
GAAAGCCGCGAAGTGTGTCG+AGG - chr6.2:87540352-87540371 MS.gene059625:CDS 60.0%
ACCTCGGCGCGCTTCGTATC+AGG - chr6.2:87539924-87539943 MS.gene059625:CDS 65.0%
TCCTGATACGAAGCGCGCCG+AGG + chr6.2:87539928-87539947 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 87538860 87541843 87538860 ID=MS.gene059625
chr6.2 mRNA 87538860 87541843 87538860 ID=MS.gene059625.t1;Parent=MS.gene059625
chr6.2 exon 87540167 87541843 87540167 ID=MS.gene059625.t1.exon1;Parent=MS.gene059625.t1
chr6.2 CDS 87540167 87541843 87540167 ID=cds.MS.gene059625.t1;Parent=MS.gene059625.t1
chr6.2 exon 87539895 87540036 87539895 ID=MS.gene059625.t1.exon2;Parent=MS.gene059625.t1
chr6.2 CDS 87539895 87540036 87539895 ID=cds.MS.gene059625.t1;Parent=MS.gene059625.t1
chr6.2 exon 87538860 87539557 87538860 ID=MS.gene059625.t1.exon3;Parent=MS.gene059625.t1
chr6.2 CDS 87538860 87539557 87538860 ID=cds.MS.gene059625.t1;Parent=MS.gene059625.t1
Gene Sequence

>MS.gene059625

AATATTTCTAAGGACTTAGTCATGTATAAACCATTTGTGACATGTGATGATCCAAAAGGAGTTGTTGAGTGTGGAAGTCTGAGGAGATATAGGTCAAATTCTCACAAAATGAAGGATAAGACAAAGTGCCGAAAGCCGGCCGAAAATTTAGAGACAAATAAACAAGACAAAGAAGAGAAGGTATCAAAAGGTTCAACAGAAAGAGATTTTGATCCATCTTCTTTGCAGCTTGTGGAGGTCTCTAGAGGTGCTGCAAAGTTGAACAACATGATTGAGTCGTGGTCTAGAGGTGTGAGGTACGATGGAAAATCCGATGATATTGCAAAGGATTTGTTAAAAGGCGCTCTTGATTTGCAAGAGTCTCTAGAGATGCTTCGTAAGGTGCAAGAAGCTTCGAATAGTATGGGTCGATTGAAGAGAAGACAAGAGGAGAAACATGAAAGAAGTAAAATTGATGCAAATGTGAATGATGGAAATAGATCAACACATTCTAATCAATTTTTTGAACACAATTCAGCTTATGGCTCTTCAAGTAGTTGTAGAGAGGAACTTAAGAAAGTGATTAAGGAGAGTTTGGTTCGACAAAATCTATTCCAAAGCACAAGCACTTCTGAAGGATTGGATTCAGCTTCAGCAGCATTCCCTTCTACAAGCTCAAGTCAATCTTCTGTTGTTTGGTATGACAAACTTTCGGATTCTTCATGTTCACCAACTTTTTCAAGGAAGGAAAAAAGTACCAATCTTGTTGCAAGGTTGATGGGATTAGAACAATCCCCTTCAAGAACATTTCCATCTGTTATGCAAAAACAGTCGGAGAATCAAAAGATTGTGAATCAGAAGAGACCTGTGTTCGAGATTGACACACCGAAGGTAAGAAAGCATAGTTCAATATTTGAGAATCCAGAAAGAGAGAAGACACTAAGGGAAATTCTTGAAACTACTCATTTCAATGGATTGTTAAAGAGTAGTCCTATTAGAGAGCACAGGCTTCGTAATCATGTCAATCATTCAAATGATCTTCATTATGAACAGTTTGATGATTTACCACCGATTGTACTCATGAAACCTCGGCGCGCTTCGTATCAGGAGTTCGTAGAAACGTACGAGCCGGTTCCTCGAGAAGAGTTTTCCTTTAGAAATCCAAAAGCAAAAGGAGTTCCTTCAAAAACCTTCAAACCAAGGGAAGGTTCAACTACCAACATGAGAAAAGAGATGATGGAAGAAAATCTATCCAAAAAGTTTATCAAAGAGGAGAGATCGAAGCGCGTCAACGAGTTTTTGGAATATGATGTGAAAGAAATCAAGGCTGTTGAAAGCAAGAAGGTTCAAAAAGCTAGTCATAGATCACAAGCAAGTGAAACAGTTGATGAAAAAGCCAAGGTAAAGAACATTACAATTCTCAGAAAACCGATACAAAAGGAGGTTTCAAAAGCTAAAATTGTGGCAAAAGCTCAAGATCAAGGCGAAATCAGGTCTAGTAGTGAAAAGTTGAGAAAGCCGCGAAGTGTGTCGAGGATTGAGAAGAATGAGATTCCATCTAGAAAGAGCATTTCATCAAATTCAAATACTACCATCACAAAACCAAAGACACAAAAGGTTAACAGTTCAAAGGAATTGAGAAAGAGTCAGATGAAGAAGCAAATATCTGTTGATTTGCCTGAAGCAGCTAAACCTATTGTAAGTTTTACTGTCATTTTTTTTTTGTCTCTATGGTATGTAGTAGTGTTTGAAATTTGAACTATCTTGCATAAAAGAGTTTAGGTTAATAATCCTTCAATGAGTTTCAATTCATTATTCTTGTGCACAGGATGAAAAATTAAAGCAAGAAGAAGGAATGAGTTTCGGTGTTTCTTGTAAAGATGATTGTGCTGAGATTAAAATAATCACTACAGTAACAGAAGATCTCATCGTGGAAGATGAAGTAGACACCTATGCAAATAAGACTAGAGGTAAATTTCTAAAATTGTCACTGGATACACTTTGGCCCTGTTTGGATAAATAGTATAATCAAGAGTTTATAGCGTTAACGCTTATCATATAAGTTCTTATGTATATGGTATTTCTAAAACAACAAAAAATAAAATAAAGTCAAACTGCTTTGAACACTTAATGTAAATATGCTGAAAATAGTCGATGAGCATCTCATAAACGGTCACACAGTGTTTATGTCAGTAGATGAGCTCAAATAAATCAATCCAAACATGCCCTTGTTAGATTATTAGAAGCACGCATATCATCACACTGAATAAATTGGAAGCTTAAGTGACTTATTTCACCCTTTTGCAGATAATTGCGAGGAGGGCCAGAATTCTTCAGTTGATGATGTTTTGATGTTAAATTGTGAGCATGAAAATGATACCATCCTTGCTGAGGAAGCTCGTGACACCACCAGCGTCAGTGAAACTTGTTTCAATCAAGACAAAGACATTGCTGACACCGTCTGTATCGGTGAAACCGATTTCGAGCCAGACAAAGACACTTCTGAGCTGAAATATTTGCTTCTAACCAGCAAATCATTTATTGACCATGCAGATGAGTTTCTCAATCTTGATATTGGTTATCCTAAGATCCTACCAAAGATTGAAACTAATGGAATATCCAATACAAGACTCTATTTGGATTGCGCGAACGAACTCGCTGAGAGAAAAAGCCTTCAAGAGTCATCACAGTTAGTTCACCCCTTATTGCTAACTTGTGTAGGGAATTCAAGATTGCAAATCTCTTTGGGAAGTTTGGTTGAAGAAATCAACAATGCAATTGACAGTCTTACATCTTACAGTGAAAATTCTGAGACTAAACTTATTTTGGATAATATTTGTGCAATGTTGGAGAGAGATATGAAGTGCAACAATAGGTTGATAAATGGAATGTGGAACTGTGGTTGGAGGCATGGATTTTCTTGTGATGAAGCTGAACAAGCTGTTAATGAAGTAGAAAACATGATTTTAGGTGGATTAATTGAGGAGATTATTGTAAATTTATGA

Protein sequence

>MS.gene059625.t1

NISKDLVMYKPFVTCDDPKGVVECGSLRRYRSNSHKMKDKTKCRKPAENLETNKQDKEEKVSKGSTERDFDPSSLQLVEVSRGAAKLNNMIESWSRGVRYDGKSDDIAKDLLKGALDLQESLEMLRKVQEASNSMGRLKRRQEEKHERSKIDANVNDGNRSTHSNQFFEHNSAYGSSSSCREELKKVIKESLVRQNLFQSTSTSEGLDSASAAFPSTSSSQSSVVWYDKLSDSSCSPTFSRKEKSTNLVARLMGLEQSPSRTFPSVMQKQSENQKIVNQKRPVFEIDTPKVRKHSSIFENPEREKTLREILETTHFNGLLKSSPIREHRLRNHVNHSNDLHYEQFDDLPPIVLMKPRRASYQEFVETYEPVPREEFSFRNPKAKGVPSKTFKPREGSTTNMRKEMMEENLSKKFIKEERSKRVNEFLEYDVKEIKAVESKKVQKASHRSQASETVDEKAKVKNITILRKPIQKEVSKAKIVAKAQDQGEIRSSSEKLRKPRSVSRIEKNEIPSRKSISSNSNTTITKPKTQKVNSSKELRKSQMKKQISVDLPEAAKPIDEKLKQEEGMSFGVSCKDDCAEIKIITTVTEDLIVEDEVDTYANKTRDNCEEGQNSSVDDVLMLNCEHENDTILAEEARDTTSVSETCFNQDKDIADTVCIGETDFEPDKDTSELKYLLLTSKSFIDHADEFLNLDIGYPKILPKIETNGISNTRLYLDCANELAERKSLQESSQLVHPLLLTCVGNSRLQISLGSLVEEINNAIDSLTSYSENSETKLILDNICAMLERDMKCNNRLINGMWNCGWRHGFSCDEAEQAVNEVENMILGGLIEEIIVNL