Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29505.t1 | XP_003616443.2 | 97.4 | 493 | 13 | 0 | 1 | 493 | 1 | 493 | 1.80E-272 | 948 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29505.t1 | Q9CAY3 | 73.2 | 492 | 128 | 3 | 3 | 492 | 12 | 501 | 6.5e-207 | 721.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29505.t1 | G7KGS4 | 97.4 | 493 | 13 | 0 | 1 | 493 | 1 | 493 | 1.3e-272 | 948.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053568 | MS.gene29505 | 0.800472 | 1.42E-48 | -1.69E-46 |
| MS.gene058015 | MS.gene29505 | 0.800884 | 1.17E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84826 | MS.gene29505 | PPI |
| MS.gene019646 | MS.gene29505 | PPI |
| MS.gene056794 | MS.gene29505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29505.t1 | MTR_5g080360 | 97.363 | 493 | 13 | 0 | 1 | 493 | 1 | 493 | 0.0 | 984 |
| MS.gene29505.t1 | MTR_1g040500 | 51.782 | 477 | 217 | 5 | 3 | 472 | 21 | 491 | 1.19e-167 | 485 |
| MS.gene29505.t1 | MTR_7g067380 | 51.266 | 474 | 222 | 3 | 2 | 472 | 24 | 491 | 1.77e-162 | 469 |
| MS.gene29505.t1 | MTR_4g415290 | 50.628 | 478 | 226 | 4 | 2 | 475 | 21 | 492 | 8.14e-159 | 460 |
| MS.gene29505.t1 | MTR_8g030620 | 47.269 | 476 | 241 | 5 | 2 | 472 | 27 | 497 | 1.44e-146 | 429 |
| MS.gene29505.t1 | MTR_5g091660 | 44.676 | 479 | 251 | 6 | 2 | 476 | 65 | 533 | 1.15e-139 | 413 |
| MS.gene29505.t1 | MTR_3g448430 | 43.478 | 483 | 240 | 12 | 3 | 472 | 49 | 511 | 2.77e-126 | 377 |
| MS.gene29505.t1 | MTR_5g061520 | 40.461 | 477 | 267 | 8 | 3 | 473 | 17 | 482 | 6.70e-118 | 355 |
| MS.gene29505.t1 | MTR_1g086650 | 41.164 | 481 | 256 | 12 | 3 | 472 | 65 | 529 | 1.51e-115 | 351 |
| MS.gene29505.t1 | MTR_3g048330 | 54.851 | 268 | 116 | 3 | 209 | 472 | 7 | 273 | 2.53e-95 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29505.t1 | AT3G11430 | 73.171 | 492 | 128 | 3 | 3 | 492 | 12 | 501 | 0.0 | 750 |
| MS.gene29505.t1 | AT5G06090 | 71.951 | 492 | 134 | 3 | 3 | 492 | 10 | 499 | 0.0 | 715 |
| MS.gene29505.t1 | AT2G38110 | 48.319 | 476 | 234 | 3 | 3 | 472 | 25 | 494 | 5.33e-147 | 430 |
| MS.gene29505.t1 | AT4G00400 | 46.751 | 477 | 244 | 6 | 2 | 473 | 22 | 493 | 1.87e-140 | 414 |
| MS.gene29505.t1 | AT1G01610 | 47.699 | 478 | 239 | 7 | 2 | 473 | 22 | 494 | 1.33e-138 | 409 |
| MS.gene29505.t1 | AT1G06520 | 43.320 | 494 | 244 | 9 | 2 | 472 | 104 | 584 | 2.63e-133 | 398 |
| MS.gene29505.t1 | AT3G11325 | 60.345 | 290 | 82 | 1 | 201 | 490 | 134 | 390 | 2.42e-117 | 350 |
| MS.gene29505.t1 | AT3G11325 | 55.238 | 105 | 47 | 0 | 12 | 116 | 9 | 113 | 4.69e-33 | 130 |
| MS.gene29505.t1 | AT3G11325 | 60.345 | 290 | 82 | 1 | 201 | 490 | 131 | 387 | 3.34e-117 | 350 |
| MS.gene29505.t1 | AT3G11325 | 55.238 | 105 | 47 | 0 | 12 | 116 | 6 | 110 | 4.32e-33 | 130 |
| MS.gene29505.t1 | AT1G02390 | 41.988 | 493 | 246 | 15 | 3 | 472 | 52 | 527 | 9.92e-112 | 341 |
| MS.gene29505.t1 | AT4G01950 | 41.322 | 484 | 258 | 14 | 3 | 472 | 46 | 517 | 2.18e-108 | 332 |
| MS.gene29505.t1 | AT4G01950 | 41.513 | 489 | 250 | 15 | 3 | 472 | 74 | 545 | 7.15e-108 | 332 |
Find 149 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACATGTCAAGATTATT+TGG | 0.150256 | 5.3:-64877720 | MS.gene29505:CDS |
| CAATATCCTTTGAACATAAT+TGG | 0.202872 | 5.3:+64877179 | None:intergenic |
| GCTGGCTATCATTGTGCTTT+TGG | 0.221316 | 5.3:+64877898 | None:intergenic |
| AGATCATCCATGAAGAATTT+TGG | 0.231300 | 5.3:+64879283 | None:intergenic |
| TTACGTGCAGATGAAGTAAT+TGG | 0.248051 | 5.3:-64879163 | MS.gene29505:CDS |
| TTACTCGAAAAGATAAATAT+AGG | 0.294416 | 5.3:-64877125 | MS.gene29505:CDS |
| CAATTATGTTCAAAGGATAT+TGG | 0.310416 | 5.3:-64877178 | MS.gene29505:CDS |
| TCCCAAGGTTAATCTGATTA+TGG | 0.312514 | 5.3:+64877767 | None:intergenic |
| ATACTCTATTTCTCGGTTAT+CGG | 0.316529 | 5.3:-64877556 | MS.gene29505:CDS |
| ATAGAGCACTAAATCGTAAA+AGG | 0.319770 | 5.3:+64877403 | None:intergenic |
| TTATAGTACCTGGCAAAGTT+TGG | 0.321027 | 5.3:+64878979 | None:intergenic |
| TCGCGACATGTCGTTCCTTC+TGG | 0.322328 | 5.3:+64877432 | None:intergenic |
| AAAAGATAAATATAGGGTTT+TGG | 0.322909 | 5.3:-64877118 | MS.gene29505:CDS |
| CCGCCTGCGGAGGGAGGGAG+AGG | 0.341597 | 5.3:+64877669 | None:intergenic |
| CCTCCCTACTAATCATCCTT+TGG | 0.351925 | 5.3:-64877812 | MS.gene29505:CDS |
| TACTCGAAAAGATAAATATA+GGG | 0.353770 | 5.3:-64877124 | MS.gene29505:CDS |
| CCTCCCTCCGCAGGCGGCCC+CGG | 0.355972 | 5.3:-64877663 | MS.gene29505:CDS |
| AACAAATGCAACCACCATTT+AGG | 0.356648 | 5.3:-64877926 | MS.gene29505:CDS |
| TGCAAGGGGTTGGAAGGGTT+TGG | 0.357093 | 5.3:-64877310 | MS.gene29505:CDS |
| CATCGTGTCTTGTACTTCAT+TGG | 0.372552 | 5.3:-64877082 | MS.gene29505:CDS |
| ATGATTAGTAGGGAGGTTAA+TGG | 0.373547 | 5.3:+64877819 | None:intergenic |
| CCATACCCAACTTTGGAACT+TGG | 0.375224 | 5.3:+64879041 | None:intergenic |
| GTGTACTCACCGCACTCTAA+TGG | 0.376230 | 5.3:-64877628 | MS.gene29505:CDS |
| TAATCCTATGGCCCGTGATT+CGG | 0.383281 | 5.3:-64879414 | MS.gene29505:CDS |
| TACTTTCTTGAACCAGTTGC+CGG | 0.390520 | 5.3:-64877244 | MS.gene29505:CDS |
| AATAGGTTTGGTTTAGCTAC+AGG | 0.398808 | 5.3:-64879124 | MS.gene29505:CDS |
| GACGAACATGTGGCTTCAAC+CGG | 0.402068 | 5.3:+64877225 | None:intergenic |
| ATGTGAGGAATGGCCCAAAA+AGG | 0.402197 | 5.3:+64877735 | None:intergenic |
| GTTAGTCTCACGGTAGGAAT+GGG | 0.403818 | 5.3:+64877522 | None:intergenic |
| AATCTCCGATTTATGAATTC+CGG | 0.404562 | 5.3:+64879330 | None:intergenic |
| GTAACCTCATAAACTGGTCT+TGG | 0.404829 | 5.3:+64877264 | None:intergenic |
| CCGGATGAGGTCGGAGAAGC+TGG | 0.406448 | 5.3:+64877880 | None:intergenic |
| AATAACCAAGTTCCAAAGTT+GGG | 0.409025 | 5.3:-64879046 | MS.gene29505:CDS |
| TTCTTTCTCCAAACTTTGCC+AGG | 0.409775 | 5.3:-64878987 | MS.gene29505:intron |
| ACAAACAACTAAATCTCCTT+TGG | 0.410080 | 5.3:+64877455 | None:intergenic |
| AGGATATTGGCTGCAACTCT+AGG | 0.410254 | 5.3:-64877165 | MS.gene29505:CDS |
| AAGAAAGTAACCTCATAAAC+TGG | 0.410853 | 5.3:+64877258 | None:intergenic |
| TGAAGTAATTGGGAGTGAAT+TGG | 0.411804 | 5.3:-64879152 | MS.gene29505:CDS |
| CTTCATGTTAGTAGCGTTCG+AGG | 0.429967 | 5.3:-64879467 | MS.gene29505:CDS |
| AGCGTCCACATTTCGCATCC+TGG | 0.432122 | 5.3:+64877500 | None:intergenic |
| CGGGGCCGCCTGCGGAGGGA+GGG | 0.433345 | 5.3:+64877664 | None:intergenic |
| CCGGGGCCGCCTGCGGAGGG+AGG | 0.436986 | 5.3:+64877663 | None:intergenic |
| GAATCCAAAGGATGATTAGT+AGG | 0.437047 | 5.3:+64877808 | None:intergenic |
| GGGTTCATGAAGAAGAAAAC+CGG | 0.438572 | 5.3:+64877285 | None:intergenic |
| TATGGCTAGTAATATACCTA+TGG | 0.440019 | 5.3:+64877785 | None:intergenic |
| GGTTAGTCTCACGGTAGGAA+TGG | 0.440830 | 5.3:+64877521 | None:intergenic |
| AGCCTTGCCATACCCAACTT+TGG | 0.442432 | 5.3:+64879034 | None:intergenic |
| CAATAACCAAGTTCCAAAGT+TGG | 0.452601 | 5.3:-64879047 | MS.gene29505:CDS |
| TAACCTCATAAACTGGTCTT+GGG | 0.452875 | 5.3:+64877265 | None:intergenic |
| CGGTAACATACTCTATTTCT+CGG | 0.456428 | 5.3:-64877563 | MS.gene29505:CDS |
| CACATCGTGTGGACTCTTCC+CGG | 0.458052 | 5.3:+64877203 | None:intergenic |
| GAACCCAAGACCAGTTTATG+AGG | 0.459966 | 5.3:-64877268 | MS.gene29505:CDS |
| ATGTGGCTTCAACCGGCAAC+TGG | 0.460408 | 5.3:+64877232 | None:intergenic |
| ACACCGGGGCCGCCTGCGGA+GGG | 0.460445 | 5.3:+64877660 | None:intergenic |
| TTAGTAGCGTTCGAGGCCTC+AGG | 0.462333 | 5.3:-64879460 | MS.gene29505:CDS |
| CGGCCGTCGTGGAAGATAAC+CGG | 0.466207 | 5.3:+64877861 | None:intergenic |
| GAACCCTACTCTATAGTTCA+TGG | 0.467040 | 5.3:+64877347 | None:intergenic |
| GTTGAAGCCACATGTTCGTC+CGG | 0.467761 | 5.3:-64877222 | MS.gene29505:CDS |
| TCGTTCTGCTATTAATCCTA+TGG | 0.468159 | 5.3:-64879426 | MS.gene29505:CDS |
| ATTGGTTGATCAAGTAAAGA+AGG | 0.479552 | 5.3:-64877064 | MS.gene29505:CDS |
| GATTTAGTTGTTTGTCCAGA+AGG | 0.481237 | 5.3:-64877447 | MS.gene29505:CDS |
| GTGTAGGCCGCTTCACCAAT+CGG | 0.482482 | 5.3:+64877841 | None:intergenic |
| CGATTTATGAATTCCGGCTA+CGG | 0.482955 | 5.3:+64879336 | None:intergenic |
| ACTCTATAGTTCATGGCAAC+CGG | 0.483007 | 5.3:+64877354 | None:intergenic |
| CCAGCTTCTCCGACCTCATC+CGG | 0.484716 | 5.3:-64877880 | MS.gene29505:CDS |
| CCTCCATGCCGAACATCTCT+AGG | 0.484822 | 5.3:+64879389 | None:intergenic |
| AACCCCTTGCAGTGGTTGCA+TGG | 0.489933 | 5.3:+64877322 | None:intergenic |
| TACGTGCAGATGAAGTAATT+GGG | 0.490722 | 5.3:-64879162 | MS.gene29505:CDS |
| CCACCTCTCCCTCCCTCCGC+AGG | 0.490767 | 5.3:-64877672 | MS.gene29505:CDS |
| CACTTATGAGAAAAGGGTTG+TGG | 0.495510 | 5.3:-64879233 | MS.gene29505:CDS |
| AACACCGGGGCCGCCTGCGG+AGG | 0.495682 | 5.3:+64877659 | None:intergenic |
| TCAGTTGTCTCTGAATTAGA+AGG | 0.500272 | 5.3:-64879523 | MS.gene29505:CDS |
| TTTAGCAACTCTTTCAGAAA+CGG | 0.500932 | 5.3:+64879075 | None:intergenic |
| CGTAGCCGGAATTCATAAAT+CGG | 0.506588 | 5.3:-64879335 | MS.gene29505:CDS |
| GGGTTGGAAGGGTTTGGACC+CGG | 0.513399 | 5.3:-64877304 | MS.gene29505:CDS |
| GGTGGCAAAGTTATTGTGAA+GGG | 0.518531 | 5.3:-64877699 | MS.gene29505:CDS |
| ATTCGGTTCCTAGAGATGTT+CGG | 0.519097 | 5.3:-64879397 | MS.gene29505:CDS |
| ATGATCTTTGTAGCCGTAGC+CGG | 0.521019 | 5.3:-64879349 | MS.gene29505:CDS |
| TATCTTCCACGACGGCCGAT+TGG | 0.522796 | 5.3:-64877856 | MS.gene29505:CDS |
| AACCACTGCAAGGGGTTGGA+AGG | 0.523750 | 5.3:-64877316 | MS.gene29505:CDS |
| CCAAGTTCCAAAGTTGGGTA+TGG | 0.524716 | 5.3:-64879041 | MS.gene29505:CDS |
| ATCTCTAGGAACCGAATCAC+GGG | 0.525909 | 5.3:+64879403 | None:intergenic |
| TATGGTGAAGAGGTTTGTTG+AGG | 0.528470 | 5.3:-64879191 | MS.gene29505:CDS |
| AGCCATAATCAGATTAACCT+TGG | 0.529275 | 5.3:-64877769 | MS.gene29505:CDS |
| GCCATAATCAGATTAACCTT+GGG | 0.530102 | 5.3:-64877768 | MS.gene29505:CDS |
| CTTCCATGCAACCACTGCAA+GGG | 0.532313 | 5.3:-64877325 | MS.gene29505:CDS |
| ATGCAACCACTGCAAGGGGT+TGG | 0.533517 | 5.3:-64877320 | MS.gene29505:CDS |
| GGATATTGGCTGCAACTCTA+GGG | 0.537098 | 5.3:-64877164 | MS.gene29505:CDS |
| CCTGCGGAGGGAGGGAGAGG+TGG | 0.537490 | 5.3:+64877672 | None:intergenic |
| AACCTCTTCACCATAACTCC+TGG | 0.538516 | 5.3:+64879199 | None:intergenic |
| GAACGCTACTAACATGAAGT+AGG | 0.542737 | 5.3:+64879471 | None:intergenic |
| GAAATAGAGTATGTTACCGC+TGG | 0.548665 | 5.3:+64877567 | None:intergenic |
| TGGTGGCAAAGTTATTGTGA+AGG | 0.548955 | 5.3:-64877700 | MS.gene29505:CDS |
| CATCTCTAGGAACCGAATCA+CGG | 0.553006 | 5.3:+64879402 | None:intergenic |
| ACCACTGCAAGGGGTTGGAA+GGG | 0.554018 | 5.3:-64877315 | MS.gene29505:CDS |
| ACATAATTGGCCACATCGTG+TGG | 0.555416 | 5.3:+64877192 | None:intergenic |
| TCGCATCCTGGTTAGTCTCA+CGG | 0.556814 | 5.3:+64877512 | None:intergenic |
| ACGACGGCCGATTGGTGAAG+CGG | 0.557445 | 5.3:-64877848 | MS.gene29505:CDS |
| TTCCATGCAACCACTGCAAG+GGG | 0.559446 | 5.3:-64877324 | MS.gene29505:CDS |
| CACATGTCAAGATTATTTGG+TGG | 0.561180 | 5.3:-64877717 | MS.gene29505:CDS |
| GCACTAAATCGTAAAAGGAA+AGG | 0.562800 | 5.3:+64877408 | None:intergenic |
| TAATCTTGACATGTGAGGAA+TGG | 0.563106 | 5.3:+64877725 | None:intergenic |
| ATGTGGCCAATTATGTTCAA+AGG | 0.565821 | 5.3:-64877185 | MS.gene29505:CDS |
| ATCATCCTTTGGATTCCCAT+AGG | 0.567783 | 5.3:-64877801 | MS.gene29505:CDS |
| TGCCAGGAGTTATGGTGAAG+AGG | 0.568451 | 5.3:-64879201 | MS.gene29505:CDS |
| ACCCTTCCAACCCCTTGCAG+TGG | 0.568618 | 5.3:+64877314 | None:intergenic |
| AAAAGGTAAAATGGCTCCCA+AGG | 0.569333 | 5.3:+64877752 | None:intergenic |
| GGAAGATAACCGGATGAGGT+CGG | 0.569958 | 5.3:+64877871 | None:intergenic |
| ATGATCTTGACATGGAAGCT+TGG | 0.575350 | 5.3:-64879267 | MS.gene29505:CDS |
| TTGAAGCCACATGTTCGTCC+GGG | 0.575686 | 5.3:-64877221 | MS.gene29505:CDS |
| TTCCAAAGTTGGGTATGGCA+AGG | 0.576401 | 5.3:-64879036 | MS.gene29505:CDS |
| ATGGCTAGTAATATACCTAT+GGG | 0.576541 | 5.3:+64877786 | None:intergenic |
| TTGCCATGAACTATAGAGTA+GGG | 0.580288 | 5.3:-64877350 | MS.gene29505:CDS |
| CTTCATGGATGATCTTGACA+TGG | 0.581073 | 5.3:-64879275 | MS.gene29505:CDS |
| TCTTCCATGCAACCACTGCA+AGG | 0.581170 | 5.3:-64877326 | MS.gene29505:CDS |
| AGTAGGGAGGTTAATGGTGT+AGG | 0.581490 | 5.3:+64877825 | None:intergenic |
| AAGAACACCGGGGCCGCCTG+CGG | 0.582203 | 5.3:+64877656 | None:intergenic |
| TACGTTGGAGGACGGAAGAG+AGG | 0.586719 | 5.3:+64877595 | None:intergenic |
| AGGACGGAAGAGAGGACCAC+AGG | 0.587085 | 5.3:+64877603 | None:intergenic |
| GGAACCGAATCACGGGCCAT+AGG | 0.587795 | 5.3:+64879410 | None:intergenic |
| ATAAAATATGAGTTATCCAA+AGG | 0.588127 | 5.3:-64877471 | MS.gene29505:CDS |
| GTTCCTAGAGATGTTCGGCA+TGG | 0.592262 | 5.3:-64879392 | MS.gene29505:CDS |
| TCGTGGAAGATAACCGGATG+AGG | 0.592639 | 5.3:+64877867 | None:intergenic |
| AATCCAAAGGATGATTAGTA+GGG | 0.594053 | 5.3:+64877809 | None:intergenic |
| ACTAACCAGGATGCGAAATG+TGG | 0.596166 | 5.3:-64877505 | MS.gene29505:CDS |
| ACTCTTCCCGGACGAACATG+TGG | 0.597450 | 5.3:+64877215 | None:intergenic |
| GCTTCACCAATCGGCCGTCG+TGG | 0.597938 | 5.3:+64877850 | None:intergenic |
| TTAGTCTCACGGTAGGAATG+GGG | 0.605101 | 5.3:+64877523 | None:intergenic |
| CCTCTCCCTCCCTCCGCAGG+CGG | 0.606101 | 5.3:-64877669 | MS.gene29505:CDS |
| CCAAATAATCTTGACATGTG+AGG | 0.613846 | 5.3:+64877720 | None:intergenic |
| CCAAAGGATGATTAGTAGGG+AGG | 0.617133 | 5.3:+64877812 | None:intergenic |
| TAGTCTCACGGTAGGAATGG+GGG | 0.621006 | 5.3:+64877524 | None:intergenic |
| GATCATTATTATGGTAAACA+AGG | 0.622764 | 5.3:+64877024 | None:intergenic |
| ACTCACAGATCGGATAGTAC+CGG | 0.630574 | 5.3:-64877373 | MS.gene29505:CDS |
| GGACGGAAGAGAGGACCACA+GGG | 0.633576 | 5.3:+64877604 | None:intergenic |
| TTCCTACCGTGAGACTAACC+AGG | 0.633579 | 5.3:-64877518 | MS.gene29505:CDS |
| GTTGCCATGAACTATAGAGT+AGG | 0.638820 | 5.3:-64877351 | MS.gene29505:CDS |
| CGGGAAGAGTCCACACGATG+TGG | 0.640851 | 5.3:-64877202 | MS.gene29505:CDS |
| CCTAGAGATGTTCGGCATGG+AGG | 0.648380 | 5.3:-64879389 | MS.gene29505:CDS |
| GGTTCATGAAGAAGAAAACC+GGG | 0.655673 | 5.3:+64877286 | None:intergenic |
| TATTTGCAGAACTCACAGAT+CGG | 0.656460 | 5.3:-64877383 | MS.gene29505:CDS |
| CATCCGGTTATCTTCCACGA+CGG | 0.663414 | 5.3:-64877864 | MS.gene29505:CDS |
| ATATACCTATGGGAATCCAA+AGG | 0.666680 | 5.3:+64877796 | None:intergenic |
| GGTTGATCAAGTAAAGAAGG+TGG | 0.673976 | 5.3:-64877061 | MS.gene29505:CDS |
| ATCCTGGTTAGTCTCACGGT+AGG | 0.682353 | 5.3:+64877516 | None:intergenic |
| AACGAAGCGAATCAAACCTG+AGG | 0.685586 | 5.3:+64879444 | None:intergenic |
| CCACAGGGTCCATTAGAGTG+CGG | 0.712721 | 5.3:+64877619 | None:intergenic |
| CCTCCAACGTAAAACTCCAG+CGG | 0.722705 | 5.3:-64877583 | MS.gene29505:CDS |
| CCGCACTCTAATGGACCCTG+TGG | 0.755400 | 5.3:-64877619 | MS.gene29505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATATTTAAAAAAAGA+CGG | + | chr5.3:64877758-64877777 | None:intergenic | 10.0% |
| !! | AATAGATTAAAAAGAATACA+CGG | + | chr5.3:64878222-64878241 | None:intergenic | 15.0% |
| !!! | GTTAGTTTTTTTTTTATTAG+TGG | - | chr5.3:64878127-64878146 | MS.gene29505:intron | 15.0% |
| !!! | TATTTCAACGAATAATTTTT+TGG | - | chr5.3:64877671-64877690 | MS.gene29505:CDS | 15.0% |
| !! | ATAAAATATGAGTTATCCAA+AGG | - | chr5.3:64879090-64879109 | MS.gene29505:CDS | 20.0% |
| !! | ATAGATTAAAAAGAATACAC+GGG | + | chr5.3:64878221-64878240 | None:intergenic | 20.0% |
| !! | ATGAATGAAAAAATTCGATT+TGG | - | chr5.3:64877632-64877651 | MS.gene29505:CDS | 20.0% |
| !! | CTTATAAGAAACAACAAAAT+TGG | + | chr5.3:64878393-64878412 | None:intergenic | 20.0% |
| !! | GTTAAATAAATTATAGTACC+TGG | + | chr5.3:64877595-64877614 | None:intergenic | 20.0% |
| !! | TAAATAGACTCGAAAATTAT+GGG | + | chr5.3:64878317-64878336 | None:intergenic | 20.0% |
| !! | TACTCGAAAAGATAAATATA+GGG | - | chr5.3:64879437-64879456 | MS.gene29505:CDS | 20.0% |
| !! | TTACTCGAAAAGATAAATAT+AGG | - | chr5.3:64879436-64879455 | MS.gene29505:CDS | 20.0% |
| !!! | AAAAGATAAATATAGGGTTT+TGG | - | chr5.3:64879443-64879462 | MS.gene29505:CDS | 20.0% |
| !!! | AATTGTATACGAACAAATTT+TGG | + | chr5.3:64877848-64877867 | None:intergenic | 20.0% |
| !!! | AGAAACAAAATTTTATTCCA+AGG | - | chr5.3:64878016-64878035 | MS.gene29505:intron | 20.0% |
| !!! | ATTGTATACGAACAAATTTT+GGG | + | chr5.3:64877847-64877866 | None:intergenic | 20.0% |
| !!! | TTTTTCTCAAAATTGTCATT+TGG | - | chr5.3:64877723-64877742 | MS.gene29505:CDS | 20.0% |
| ! | ACAACTATAAGCCATATTAT+AGG | + | chr5.3:64877977-64877996 | None:intergenic | 25.0% |
| ! | CAATATCCTTTGAACATAAT+TGG | + | chr5.3:64879385-64879404 | None:intergenic | 25.0% |
| ! | CAATTATGTTCAAAGGATAT+TGG | - | chr5.3:64879383-64879402 | MS.gene29505:CDS | 25.0% |
| ! | GTAAATAGACTCGAAAATTA+TGG | + | chr5.3:64878318-64878337 | None:intergenic | 25.0% |
| ! | TAAGTGTAAGTATTCCAAAA+GGG | - | chr5.3:64877944-64877963 | MS.gene29505:intron | 25.0% |
| ! | TAATATGGCTTATAGTTGTT+TGG | - | chr5.3:64877978-64877997 | MS.gene29505:intron | 25.0% |
| ! | TTAAGTGTAAGTATTCCAAA+AGG | - | chr5.3:64877943-64877962 | MS.gene29505:intron | 25.0% |
| !! | AGTTTTACCAAAATTCTTCA+TGG | - | chr5.3:64877271-64877290 | MS.gene29505:CDS | 25.0% |
| !! | TTTTAGCACTTATGAGAAAA+GGG | - | chr5.3:64877322-64877341 | MS.gene29505:CDS | 25.0% |
| !!! | ACAAGATTTTGATACTAAAC+AGG | + | chr5.3:64878340-64878359 | None:intergenic | 25.0% |
| !!! | TATGGGTTAAATACGTTTTT+TGG | + | chr5.3:64878300-64878319 | None:intergenic | 25.0% |
| !!! | TTTGCCTTTACTTTTATGTT+CGG | - | chr5.3:64877868-64877887 | MS.gene29505:CDS | 25.0% |
| !!! | TTTTTAGCACTTATGAGAAA+AGG | - | chr5.3:64877321-64877340 | MS.gene29505:CDS | 25.0% |
| AAGAAAGTAACCTCATAAAC+TGG | + | chr5.3:64879306-64879325 | None:intergenic | 30.0% | |
| AATAACCAAGTTCCAAAGTT+GGG | - | chr5.3:64877515-64877534 | MS.gene29505:CDS | 30.0% | |
| AATCCAAAGGATGATTAGTA+GGG | + | chr5.3:64878755-64878774 | None:intergenic | 30.0% | |
| AATCTCCGATTTATGAATTC+CGG | + | chr5.3:64877234-64877253 | None:intergenic | 30.0% | |
| ACAAACAACTAAATCTCCTT+TGG | + | chr5.3:64879109-64879128 | None:intergenic | 30.0% | |
| ATGACCGAACATAAAAGTAA+AGG | + | chr5.3:64877875-64877894 | None:intergenic | 30.0% | |
| ATGGCTAGTAATATACCTAT+GGG | + | chr5.3:64878778-64878797 | None:intergenic | 30.0% | |
| ATTGGTTGATCAAGTAAAGA+AGG | - | chr5.3:64879497-64879516 | MS.gene29505:CDS | 30.0% | |
| TATGGCTAGTAATATACCTA+TGG | + | chr5.3:64878779-64878798 | None:intergenic | 30.0% | |
| TTCATTGCAATTTCTCACTT+TGG | + | chr5.3:64877617-64877636 | None:intergenic | 30.0% | |
| TTTAGCAACTCTTTCAGAAA+CGG | + | chr5.3:64877489-64877508 | None:intergenic | 30.0% | |
| ! | AGATCATCCATGAAGAATTT+TGG | + | chr5.3:64877281-64877300 | None:intergenic | 30.0% |
| ! | ATACTCTATTTCTCGGTTAT+CGG | - | chr5.3:64879005-64879024 | MS.gene29505:CDS | 30.0% |
| ! | ATAGAGCACTAAATCGTAAA+AGG | + | chr5.3:64879161-64879180 | None:intergenic | 30.0% |
| ! | GACATATTTTGTATGTGTTC+AGG | - | chr5.3:64878612-64878631 | MS.gene29505:intron | 30.0% |
| !!! | ATAAATATAGGGTTTTGGCT+GGG | - | chr5.3:64879448-64879467 | MS.gene29505:CDS | 30.0% |
| !!! | GAATTGGTTTTCAATAGGTT+TGG | - | chr5.3:64877425-64877444 | MS.gene29505:CDS | 30.0% |
| AACAAAAATGCCAGGAGTTA+TGG | - | chr5.3:64877352-64877371 | MS.gene29505:CDS | 35.0% | |
| AACAAATGCAACCACCATTT+AGG | - | chr5.3:64878635-64878654 | MS.gene29505:intron | 35.0% | |
| AATGGCCCAAAAAGGTAAAA+TGG | + | chr5.3:64878821-64878840 | None:intergenic | 35.0% | |
| AGCCATAATCAGATTAACCT+TGG | - | chr5.3:64878792-64878811 | MS.gene29505:intron | 35.0% | |
| AGGGTGAACTTCCTATAATA+TGG | - | chr5.3:64877963-64877982 | MS.gene29505:intron | 35.0% | |
| AGTACACACAAAAAGAACAC+CGG | + | chr5.3:64878920-64878939 | None:intergenic | 35.0% | |
| ATATACCTATGGGAATCCAA+AGG | + | chr5.3:64878768-64878787 | None:intergenic | 35.0% | |
| ATGATTAGTAGGGAGGTTAA+TGG | + | chr5.3:64878745-64878764 | None:intergenic | 35.0% | |
| ATGTGGCCAATTATGTTCAA+AGG | - | chr5.3:64879376-64879395 | MS.gene29505:CDS | 35.0% | |
| CAATAACCAAGTTCCAAAGT+TGG | - | chr5.3:64877514-64877533 | MS.gene29505:CDS | 35.0% | |
| CACATGTCAAGATTATTTGG+TGG | - | chr5.3:64878844-64878863 | MS.gene29505:intron | 35.0% | |
| CCAAATAATCTTGACATGTG+AGG | + | chr5.3:64878844-64878863 | None:intergenic | 35.0% | |
| CCTCACATGTCAAGATTATT+TGG | - | chr5.3:64878841-64878860 | MS.gene29505:intron | 35.0% | |
| CTCAGATAAAGACTCTTTCA+CGG | - | chr5.3:64878068-64878087 | MS.gene29505:intron | 35.0% | |
| GAATCCAAAGGATGATTAGT+AGG | + | chr5.3:64878756-64878775 | None:intergenic | 35.0% | |
| GATTTAGTTGTTTGTCCAGA+AGG | - | chr5.3:64879114-64879133 | MS.gene29505:CDS | 35.0% | |
| GCACTAAATCGTAAAAGGAA+AGG | + | chr5.3:64879156-64879175 | None:intergenic | 35.0% | |
| GCCATAATCAGATTAACCTT+GGG | - | chr5.3:64878793-64878812 | MS.gene29505:intron | 35.0% | |
| TAATCTTGACATGTGAGGAA+TGG | + | chr5.3:64878839-64878858 | None:intergenic | 35.0% | |
| TACGTGCAGATGAAGTAATT+GGG | - | chr5.3:64877399-64877418 | MS.gene29505:CDS | 35.0% | |
| TATTTGCAGAACTCACAGAT+CGG | - | chr5.3:64879178-64879197 | MS.gene29505:CDS | 35.0% | |
| TCAGATAAAGACTCTTTCAC+GGG | - | chr5.3:64878069-64878088 | MS.gene29505:intron | 35.0% | |
| TCAGTTGTCTCTGAATTAGA+AGG | - | chr5.3:64877038-64877057 | MS.gene29505:CDS | 35.0% | |
| TCCCAAGGTTAATCTGATTA+TGG | + | chr5.3:64878797-64878816 | None:intergenic | 35.0% | |
| TCGTTCTGCTATTAATCCTA+TGG | - | chr5.3:64877135-64877154 | MS.gene29505:CDS | 35.0% | |
| TGAAGTAATTGGGAGTGAAT+TGG | - | chr5.3:64877409-64877428 | MS.gene29505:CDS | 35.0% | |
| TTACGTGCAGATGAAGTAAT+TGG | - | chr5.3:64877398-64877417 | MS.gene29505:CDS | 35.0% | |
| TTATAGTACCTGGCAAAGTT+TGG | + | chr5.3:64877585-64877604 | None:intergenic | 35.0% | |
| TTGCCATGAACTATAGAGTA+GGG | - | chr5.3:64879211-64879230 | MS.gene29505:CDS | 35.0% | |
| TTGGTTCATAAATACGATGG+GGG | - | chr5.3:64878093-64878112 | MS.gene29505:intron | 35.0% | |
| ! | AATAGGTTTGGTTTAGCTAC+AGG | - | chr5.3:64877437-64877456 | MS.gene29505:CDS | 35.0% |
| ! | CGGTAACATACTCTATTTCT+CGG | - | chr5.3:64878998-64879017 | MS.gene29505:CDS | 35.0% |
| ! | GGTTGGTTCATAAATACGAT+GGG | - | chr5.3:64878091-64878110 | MS.gene29505:intron | 35.0% |
| ! | GTTGGTTCATAAATACGATG+GGG | - | chr5.3:64878092-64878111 | MS.gene29505:intron | 35.0% |
| ! | TTATAGGAAGTTCACCCTTT+TGG | + | chr5.3:64877961-64877980 | None:intergenic | 35.0% |
| !! | CTCATTTGTTGTCTTCAATC+TGG | - | chr5.3:64878156-64878175 | MS.gene29505:intron | 35.0% |
| !! | GATAAATATAGGGTTTTGGC+TGG | - | chr5.3:64879447-64879466 | MS.gene29505:CDS | 35.0% |
| !! | TAACCTCATAAACTGGTCTT+GGG | + | chr5.3:64879299-64879318 | None:intergenic | 35.0% |
| !! | TTATAGTTGTTTGGTGCTTG+TGG | - | chr5.3:64877987-64878006 | MS.gene29505:intron | 35.0% |
| !!! | GGAGTGAATTGGTTTTCAAT+AGG | - | chr5.3:64877420-64877439 | MS.gene29505:CDS | 35.0% |
| AAAAGGTAAAATGGCTCCCA+AGG | + | chr5.3:64878812-64878831 | None:intergenic | 40.0% | |
| ACTCTATAGTTCATGGCAAC+CGG | + | chr5.3:64879210-64879229 | None:intergenic | 40.0% | |
| ATCATCCTTTGGATTCCCAT+AGG | - | chr5.3:64878760-64878779 | MS.gene29505:intron | 40.0% | |
| ATGATCTTGACATGGAAGCT+TGG | - | chr5.3:64877294-64877313 | MS.gene29505:CDS | 40.0% | |
| ATTCGGTTCCTAGAGATGTT+CGG | - | chr5.3:64877164-64877183 | MS.gene29505:CDS | 40.0% | |
| CACTTATGAGAAAAGGGTTG+TGG | - | chr5.3:64877328-64877347 | MS.gene29505:CDS | 40.0% | |
| CAGATAAAGACTCTTTCACG+GGG | - | chr5.3:64878070-64878089 | MS.gene29505:intron | 40.0% | |
| CATCGTGTCTTGTACTTCAT+TGG | - | chr5.3:64879479-64879498 | MS.gene29505:CDS | 40.0% | |
| CGATTTATGAATTCCGGCTA+CGG | + | chr5.3:64877228-64877247 | None:intergenic | 40.0% | |
| CGTAGCCGGAATTCATAAAT+CGG | - | chr5.3:64877226-64877245 | MS.gene29505:CDS | 40.0% | |
| CTTCATGGATGATCTTGACA+TGG | - | chr5.3:64877286-64877305 | MS.gene29505:CDS | 40.0% | |
| GAAATAGAGTATGTTACCGC+TGG | + | chr5.3:64878997-64879016 | None:intergenic | 40.0% | |
| GAACCCTACTCTATAGTTCA+TGG | + | chr5.3:64879217-64879236 | None:intergenic | 40.0% | |
| GAACGCTACTAACATGAAGT+AGG | + | chr5.3:64877093-64877112 | None:intergenic | 40.0% | |
| GGGTTCATGAAGAAGAAAAC+CGG | + | chr5.3:64879279-64879298 | None:intergenic | 40.0% | |
| GGTGGCAAAGTTATTGTGAA+GGG | - | chr5.3:64878862-64878881 | MS.gene29505:intron | 40.0% | |
| GGTTCATGAAGAAGAAAACC+GGG | + | chr5.3:64879278-64879297 | None:intergenic | 40.0% | |
| GGTTGATCAAGTAAAGAAGG+TGG | - | chr5.3:64879500-64879519 | MS.gene29505:CDS | 40.0% | |
| GTACACACAAAAAGAACACC+GGG | + | chr5.3:64878919-64878938 | None:intergenic | 40.0% | |
| GTTGCCATGAACTATAGAGT+AGG | - | chr5.3:64879210-64879229 | MS.gene29505:CDS | 40.0% | |
| GTTGTGGTAACAAAAATGCC+AGG | - | chr5.3:64877344-64877363 | MS.gene29505:CDS | 40.0% | |
| TACACACAAAAAGAACACCG+GGG | + | chr5.3:64878918-64878937 | None:intergenic | 40.0% | |
| TACTTTCTTGAACCAGTTGC+CGG | - | chr5.3:64879317-64879336 | MS.gene29505:CDS | 40.0% | |
| TGATGTTTGCATGTTCACCT+TGG | + | chr5.3:64878036-64878055 | None:intergenic | 40.0% | |
| TGGTGGCAAAGTTATTGTGA+AGG | - | chr5.3:64878861-64878880 | MS.gene29505:intron | 40.0% | |
| TTCTTTCTCCAAACTTTGCC+AGG | - | chr5.3:64877574-64877593 | MS.gene29505:CDS | 40.0% | |
| ! | GTAACCTCATAAACTGGTCT+TGG | + | chr5.3:64879300-64879319 | None:intergenic | 40.0% |
| !! | GGGAGCCATTTTACCTTTTT+GGG | - | chr5.3:64878813-64878832 | MS.gene29505:intron | 40.0% |
| !! | GGGTTGGTTCATAAATACGA+TGG | - | chr5.3:64878090-64878109 | MS.gene29505:intron | 40.0% |
| !! | TATGGTGAAGAGGTTTGTTG+AGG | - | chr5.3:64877370-64877389 | MS.gene29505:CDS | 40.0% |
| !! | TGGGAGCCATTTTACCTTTT+TGG | - | chr5.3:64878812-64878831 | MS.gene29505:intron | 40.0% |
| !!! | TGCTTTTGGCTTGTCCTAAA+TGG | + | chr5.3:64878652-64878671 | None:intergenic | 40.0% |
| !!! | TTTTGGCTTGTCCTAAATGG+TGG | + | chr5.3:64878649-64878668 | None:intergenic | 40.0% |
| AAATACGATGGGGGAGAACT+TGG | - | chr5.3:64878102-64878121 | MS.gene29505:intron | 45.0% | |
| AACCTCTTCACCATAACTCC+TGG | + | chr5.3:64877365-64877384 | None:intergenic | 45.0% | |
| AACGAAGCGAATCAAACCTG+AGG | + | chr5.3:64877120-64877139 | None:intergenic | 45.0% | |
| AATACGATGGGGGAGAACTT+GGG | - | chr5.3:64878103-64878122 | MS.gene29505:intron | 45.0% | |
| ACATAATTGGCCACATCGTG+TGG | + | chr5.3:64879372-64879391 | None:intergenic | 45.0% | |
| ACTAACCAGGATGCGAAATG+TGG | - | chr5.3:64879056-64879075 | MS.gene29505:CDS | 45.0% | |
| ACTCACAGATCGGATAGTAC+CGG | - | chr5.3:64879188-64879207 | MS.gene29505:CDS | 45.0% | |
| AGTAGGGAGGTTAATGGTGT+AGG | + | chr5.3:64878739-64878758 | None:intergenic | 45.0% | |
| ATGATCTTTGTAGCCGTAGC+CGG | - | chr5.3:64877212-64877231 | MS.gene29505:CDS | 45.0% | |
| ATGTGAGGAATGGCCCAAAA+AGG | + | chr5.3:64878829-64878848 | None:intergenic | 45.0% | |
| CCAAAGGATGATTAGTAGGG+AGG | + | chr5.3:64878752-64878771 | None:intergenic | 45.0% | |
| CCAAGTTCCAAAGTTGGGTA+TGG | - | chr5.3:64877520-64877539 | MS.gene29505:CDS | 45.0% | |
| CCTCCCTACTAATCATCCTT+TGG | - | chr5.3:64878749-64878768 | MS.gene29505:intron | 45.0% | |
| CTTCATGTTAGTAGCGTTCG+AGG | - | chr5.3:64877094-64877113 | MS.gene29505:CDS | 45.0% | |
| GAACCCAAGACCAGTTTATG+AGG | - | chr5.3:64879293-64879312 | MS.gene29505:CDS | 45.0% | |
| TAAAGACTCTTTCACGGGGT+TGG | - | chr5.3:64878074-64878093 | MS.gene29505:intron | 45.0% | |
| TAATCCTATGGCCCGTGATT+CGG | - | chr5.3:64877147-64877166 | MS.gene29505:CDS | 45.0% | |
| TTAGTCTCACGGTAGGAATG+GGG | + | chr5.3:64879041-64879060 | None:intergenic | 45.0% | |
| TTCCAAAGTTGGGTATGGCA+AGG | - | chr5.3:64877525-64877544 | MS.gene29505:CDS | 45.0% | |
| ! | AGGATATTGGCTGCAACTCT+AGG | - | chr5.3:64879396-64879415 | MS.gene29505:CDS | 45.0% |
| ! | ATCTCTAGGAACCGAATCAC+GGG | + | chr5.3:64877161-64877180 | None:intergenic | 45.0% |
| ! | CATCTCTAGGAACCGAATCA+CGG | + | chr5.3:64877162-64877181 | None:intergenic | 45.0% |
| ! | GCTGGCTATCATTGTGCTTT+TGG | + | chr5.3:64878666-64878685 | None:intergenic | 45.0% |
| ! | GGATATTGGCTGCAACTCTA+GGG | - | chr5.3:64879397-64879416 | MS.gene29505:CDS | 45.0% |
| ! | GTTAGTCTCACGGTAGGAAT+GGG | + | chr5.3:64879042-64879061 | None:intergenic | 45.0% |
| ! | TGGAGTTTTACGTTGGAGGA+CGG | + | chr5.3:64878977-64878996 | None:intergenic | 45.0% |
| ! | TTACCGCTGGAGTTTTACGT+TGG | + | chr5.3:64878984-64879003 | None:intergenic | 45.0% |
| !! | CCATACCCAACTTTGGAACT+TGG | + | chr5.3:64877523-64877542 | None:intergenic | 45.0% |
| !! | AATTAATTTACTTTAAATAT+TGG | - | chr5.3:64878567-64878586 | MS.gene29505:intron | 5.0% |
| !! | ATTAATTTACTTTAAATATT+GGG | - | chr5.3:64878568-64878587 | MS.gene29505:intron | 5.0% |
| AGCCTTGCCATACCCAACTT+TGG | + | chr5.3:64877530-64877549 | None:intergenic | 50.0% | |
| CATCCGGTTATCTTCCACGA+CGG | - | chr5.3:64878697-64878716 | MS.gene29505:intron | 50.0% | |
| CCTCCAACGTAAAACTCCAG+CGG | - | chr5.3:64878978-64878997 | MS.gene29505:intron | 50.0% | |
| CTTCCATGCAACCACTGCAA+GGG | - | chr5.3:64879236-64879255 | MS.gene29505:CDS | 50.0% | |
| GACGAACATGTGGCTTCAAC+CGG | + | chr5.3:64879339-64879358 | None:intergenic | 50.0% | |
| GGAAGATAACCGGATGAGGT+CGG | + | chr5.3:64878693-64878712 | None:intergenic | 50.0% | |
| GTGTACTCACCGCACTCTAA+TGG | - | chr5.3:64878933-64878952 | MS.gene29505:intron | 50.0% | |
| GTTCCTAGAGATGTTCGGCA+TGG | - | chr5.3:64877169-64877188 | MS.gene29505:CDS | 50.0% | |
| GTTGAAGCCACATGTTCGTC+CGG | - | chr5.3:64879339-64879358 | MS.gene29505:CDS | 50.0% | |
| TAGTCTCACGGTAGGAATGG+GGG | + | chr5.3:64879040-64879059 | None:intergenic | 50.0% | |
| TCGTGGAAGATAACCGGATG+AGG | + | chr5.3:64878697-64878716 | None:intergenic | 50.0% | |
| TCTTCCATGCAACCACTGCA+AGG | - | chr5.3:64879235-64879254 | MS.gene29505:CDS | 50.0% | |
| TGCCAGGAGTTATGGTGAAG+AGG | - | chr5.3:64877360-64877379 | MS.gene29505:CDS | 50.0% | |
| TTCCATGCAACCACTGCAAG+GGG | - | chr5.3:64879237-64879256 | MS.gene29505:CDS | 50.0% | |
| TTCCTACCGTGAGACTAACC+AGG | - | chr5.3:64879043-64879062 | MS.gene29505:CDS | 50.0% | |
| TTGAAGCCACATGTTCGTCC+GGG | - | chr5.3:64879340-64879359 | MS.gene29505:CDS | 50.0% | |
| !! | ATCCTGGTTAGTCTCACGGT+AGG | + | chr5.3:64879048-64879067 | None:intergenic | 50.0% |
| !! | GGTTAGTCTCACGGTAGGAA+TGG | + | chr5.3:64879043-64879062 | None:intergenic | 50.0% |
| !! | TCGCATCCTGGTTAGTCTCA+CGG | + | chr5.3:64879052-64879071 | None:intergenic | 50.0% |
| !!! | AGGGTTTTGGCTGGGAATGA+TGG | - | chr5.3:64879456-64879475 | MS.gene29505:CDS | 50.0% |
| AACCACTGCAAGGGGTTGGA+AGG | - | chr5.3:64879245-64879264 | MS.gene29505:CDS | 55.0% | |
| AACCCCTTGCAGTGGTTGCA+TGG | + | chr5.3:64879242-64879261 | None:intergenic | 55.0% | |
| ACCACTGCAAGGGGTTGGAA+GGG | - | chr5.3:64879246-64879265 | MS.gene29505:CDS | 55.0% | |
| ACTCTTCCCGGACGAACATG+TGG | + | chr5.3:64879349-64879368 | None:intergenic | 55.0% | |
| AGCGTCCACATTTCGCATCC+TGG | + | chr5.3:64879064-64879083 | None:intergenic | 55.0% | |
| ATGCAACCACTGCAAGGGGT+TGG | - | chr5.3:64879241-64879260 | MS.gene29505:CDS | 55.0% | |
| ATGTGGCTTCAACCGGCAAC+TGG | + | chr5.3:64879332-64879351 | None:intergenic | 55.0% | |
| CACATCGTGTGGACTCTTCC+CGG | + | chr5.3:64879361-64879380 | None:intergenic | 55.0% | |
| CCACAGGGTCCATTAGAGTG+CGG | + | chr5.3:64878945-64878964 | None:intergenic | 55.0% | |
| CCTAGAGATGTTCGGCATGG+AGG | - | chr5.3:64877172-64877191 | MS.gene29505:CDS | 55.0% | |
| CCTCCATGCCGAACATCTCT+AGG | + | chr5.3:64877175-64877194 | None:intergenic | 55.0% | |
| GTGTAGGCCGCTTCACCAAT+CGG | + | chr5.3:64878723-64878742 | None:intergenic | 55.0% | |
| TACGTTGGAGGACGGAAGAG+AGG | + | chr5.3:64878969-64878988 | None:intergenic | 55.0% | |
| TATCTTCCACGACGGCCGAT+TGG | - | chr5.3:64878705-64878724 | MS.gene29505:intron | 55.0% | |
| TCGCGACATGTCGTTCCTTC+TGG | + | chr5.3:64879132-64879151 | None:intergenic | 55.0% | |
| TGCAAGGGGTTGGAAGGGTT+TGG | - | chr5.3:64879251-64879270 | MS.gene29505:CDS | 55.0% | |
| TTAGTAGCGTTCGAGGCCTC+AGG | - | chr5.3:64877101-64877120 | MS.gene29505:CDS | 55.0% | |
| ! | CCGCTGGAGTTTTACGTTGG+AGG | + | chr5.3:64878981-64879000 | None:intergenic | 55.0% |
| ACCCTTCCAACCCCTTGCAG+TGG | + | chr5.3:64879250-64879269 | None:intergenic | 60.0% | |
| ACGACGGCCGATTGGTGAAG+CGG | - | chr5.3:64878713-64878732 | MS.gene29505:intron | 60.0% | |
| AGGACGGAAGAGAGGACCAC+AGG | + | chr5.3:64878961-64878980 | None:intergenic | 60.0% | |
| CCAGCTTCTCCGACCTCATC+CGG | - | chr5.3:64878681-64878700 | MS.gene29505:intron | 60.0% | |
| CGGCCGTCGTGGAAGATAAC+CGG | + | chr5.3:64878703-64878722 | None:intergenic | 60.0% | |
| CGGGAAGAGTCCACACGATG+TGG | - | chr5.3:64879359-64879378 | MS.gene29505:CDS | 60.0% | |
| GGAACCGAATCACGGGCCAT+AGG | + | chr5.3:64877154-64877173 | None:intergenic | 60.0% | |
| GGACGGAAGAGAGGACCACA+GGG | + | chr5.3:64878960-64878979 | None:intergenic | 60.0% | |
| GGGTTGGAAGGGTTTGGACC+CGG | - | chr5.3:64879257-64879276 | MS.gene29505:CDS | 60.0% | |
| TCACGGTAGGAATGGGGGAG+AGG | + | chr5.3:64879035-64879054 | None:intergenic | 60.0% | |
| ! | CCGCACTCTAATGGACCCTG+TGG | - | chr5.3:64878942-64878961 | MS.gene29505:intron | 60.0% |
| CCGGATGAGGTCGGAGAAGC+TGG | + | chr5.3:64878684-64878703 | None:intergenic | 65.0% | |
| GCTTCACCAATCGGCCGTCG+TGG | + | chr5.3:64878714-64878733 | None:intergenic | 65.0% | |
| AAGAACACCGGGGCCGCCTG+CGG | + | chr5.3:64878908-64878927 | None:intergenic | 70.0% | |
| CCACCTCTCCCTCCCTCCGC+AGG | - | chr5.3:64878889-64878908 | MS.gene29505:intron | 75.0% | |
| CCTCTCCCTCCCTCCGCAGG+CGG | - | chr5.3:64878892-64878911 | MS.gene29505:intron | 75.0% | |
| CCTGCGGAGGGAGGGAGAGG+TGG | + | chr5.3:64878892-64878911 | None:intergenic | 75.0% | |
| ! | AACACCGGGGCCGCCTGCGG+AGG | + | chr5.3:64878905-64878924 | None:intergenic | 80.0% |
| ! | ACACCGGGGCCGCCTGCGGA+GGG | + | chr5.3:64878904-64878923 | None:intergenic | 80.0% |
| ! | CCGCCTGCGGAGGGAGGGAG+AGG | + | chr5.3:64878895-64878914 | None:intergenic | 80.0% |
| ! | CCTCCCTCCGCAGGCGGCCC+CGG | - | chr5.3:64878898-64878917 | MS.gene29505:intron | 85.0% |
| ! | CGGGGCCGCCTGCGGAGGGA+GGG | + | chr5.3:64878900-64878919 | None:intergenic | 85.0% |
| ! | CCGGGGCCGCCTGCGGAGGG+AGG | + | chr5.3:64878901-64878920 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 64877032 | 64879551 | 64877032 | ID=MS.gene29505 |
| chr5.3 | mRNA | 64877032 | 64879551 | 64877032 | ID=MS.gene29505.t1;Parent=MS.gene29505 |
| chr5.3 | exon | 64878988 | 64879551 | 64878988 | ID=MS.gene29505.t1.exon1;Parent=MS.gene29505.t1 |
| chr5.3 | CDS | 64878988 | 64879551 | 64878988 | ID=cds.MS.gene29505.t1;Parent=MS.gene29505.t1 |
| chr5.3 | exon | 64877032 | 64877949 | 64877032 | ID=MS.gene29505.t1.exon2;Parent=MS.gene29505.t1 |
| chr5.3 | CDS | 64877032 | 64877949 | 64877032 | ID=cds.MS.gene29505.t1;Parent=MS.gene29505.t1 |
| Gene Sequence |
| Protein sequence |
