AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29614

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29614.t1 MTR_5g082150 94.667 450 22 1 1 448 1 450 0.0 885
MS.gene29614.t1 MTR_3g070230 59.870 461 156 8 1 440 1 453 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29614.t1 AT2G40000 50.661 454 189 9 1 440 1 433 9.20e-164 469
MS.gene29614.t1 AT3G55840 49.875 401 172 4 49 438 43 425 4.43e-145 421

Find 93 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAAGGTGCCGGAGATTT+TGG 0.145558 5.2:-70147319 MS.gene29614:CDS
ACCTACTTGGTTTCCTAGTT+TGG 0.222761 5.2:-70147079 MS.gene29614:CDS
CTGAAACTGAAGAAGCAATT+AGG 0.260225 5.2:-70147450 MS.gene29614:CDS
TTCAGTTTCAGAAAATCTTC+TGG 0.260322 5.2:+70147462 None:intergenic
ATGGGCTCGTTGGCCCATTT+GGG 0.268174 5.2:+70148137 None:intergenic
GGGAAGTAGCGAGATGAATT+TGG 0.290522 5.2:-70147127 MS.gene29614:CDS
GATGGGCTCGTTGGCCCATT+TGG 0.305808 5.2:+70148136 None:intergenic
TGTAATTACACGTTAGGTTT+AGG 0.307935 5.2:-70147780 MS.gene29614:CDS
CTGAAGAAGCAATTAGGTTT+AGG 0.312550 5.2:-70147444 MS.gene29614:CDS
ATAATGCGATGACGTGGATT+TGG 0.322553 5.2:+70147991 None:intergenic
TTATGGTTATAAACAAGTTT+TGG 0.323018 5.2:-70147160 MS.gene29614:CDS
TTCACGCGGTGGAACGAATC+TGG 0.323133 5.2:-70147527 MS.gene29614:CDS
TTCTGCCACGTGGCTAGTTT+TGG 0.328397 5.2:+70147858 None:intergenic
CGTTTATTGATGTAAGGTCT+TGG 0.344252 5.2:+70148050 None:intergenic
TCCCTCATCTCCAAACCTTT+TGG 0.344945 5.2:-70148175 MS.gene29614:CDS
TCTAATGAATGGATGAAATT+CGG 0.358442 5.2:+70147705 None:intergenic
CACAGGTGGGCCAGGGGTAA+TGG 0.359982 5.2:-70147280 MS.gene29614:CDS
TAATGCGATGACGTGGATTT+GGG 0.368580 5.2:+70147992 None:intergenic
CCAAGATGGTTGATTTAGAA+TGG 0.372552 5.2:-70148343 None:intergenic
TGGAAGAGGAAGATGGAAAG+TGG 0.383586 5.2:+70148265 None:intergenic
TTGATGAGTGCCAAAAGGTT+TGG 0.384259 5.2:+70148165 None:intergenic
ACTCATCAACTTTCCCCAAA+TGG 0.396937 5.2:-70148151 MS.gene29614:CDS
GTTGACCCCACAGGTGGGCC+AGG 0.398632 5.2:-70147288 MS.gene29614:CDS
ATTACCCCTGGCCCACCTGT+GGG 0.401934 5.2:+70147282 None:intergenic
GTTCGCTATAGCTTCTGAAT+TGG 0.419188 5.2:+70147892 None:intergenic
GTTTATTGATGTAAGGTCTT+GGG 0.426439 5.2:+70148051 None:intergenic
GTGTCCATGACTCGAAAATC+TGG 0.432252 5.2:+70147625 None:intergenic
TATAGCTTCTGAATTGGTCT+TGG 0.433807 5.2:+70147898 None:intergenic
CACTCACGTTTATTGATGTA+AGG 0.436780 5.2:+70148044 None:intergenic
ATTGCTTCTTCCATTACCCC+TGG 0.447070 5.2:+70147270 None:intergenic
CTCATCAACTTTCCCCAAAT+GGG 0.448880 5.2:-70148150 MS.gene29614:CDS
ATGACGTGTAATTACACGTT+AGG 0.449414 5.2:-70147786 MS.gene29614:CDS
CATTACCCCTGGCCCACCTG+TGG 0.450484 5.2:+70147281 None:intergenic
TGAAGATTTACACATGATGA+TGG 0.454928 5.2:-70147487 MS.gene29614:CDS
ACGGTGTCGTTTCTAATGAA+TGG 0.465434 5.2:+70147694 None:intergenic
TCGTTTGGTGTAAGTGGAAG+AGG 0.468935 5.2:+70148251 None:intergenic
CATTTGTTGCAAGGGTTGCA+AGG 0.470363 5.2:-70147210 MS.gene29614:CDS
GAAGCTGTTGTGATGTCGTT+TGG 0.474203 5.2:+70148236 None:intergenic
AGGTTTGGAGATGAGGGAGG+TGG 0.482326 5.2:+70148180 None:intergenic
TGCCAAAAGGTTTGGAGATG+AGG 0.483847 5.2:+70148173 None:intergenic
ACGACACCGTTTGATCATAT+CGG 0.493809 5.2:-70147681 MS.gene29614:CDS
GTGTAGAGATTTGAAACAAA+AGG 0.502499 5.2:-70147334 MS.gene29614:CDS
CGCATTATTCTGCGATGACG+AGG 0.504892 5.2:-70147976 MS.gene29614:CDS
AGAAGGTTCATTTGTTGCAA+GGG 0.512320 5.2:-70147218 MS.gene29614:CDS
ATTTCAAGAGCGGTTAAAGC+GGG 0.519016 5.2:+70148107 None:intergenic
GTCTTAGCAGCATCCAAACT+AGG 0.522386 5.2:+70147066 None:intergenic
ACGTCGTCGTAACGGAGAAT+CGG 0.523292 5.2:+70147735 None:intergenic
GAGAAGGTTCATTTGTTGCA+AGG 0.525081 5.2:-70147219 MS.gene29614:CDS
GTGATGTCGTTTGGTGTAAG+TGG 0.526001 5.2:+70148245 None:intergenic
TGAATTTGGAATGTTTGAGT+AGG 0.527672 5.2:-70147113 MS.gene29614:CDS
AAGAACGATGAATGAAAAGA+AGG 0.531559 5.2:-70147418 MS.gene29614:CDS
GGAAGAGGAAGATGGAAAGT+GGG 0.535833 5.2:+70148266 None:intergenic
TTGACCCCACAGGTGGGCCA+GGG 0.536709 5.2:-70147287 MS.gene29614:CDS
GTGTAAGTGGAAGAGGAAGA+TGG 0.540820 5.2:+70148258 None:intergenic
AAAGTGGGTAAAGAGAGTTT+TGG 0.542871 5.2:+70148281 None:intergenic
TGGGCTCGTTGGCCCATTTG+GGG 0.546043 5.2:+70148138 None:intergenic
GTTTGCAAACGTCGTCGTAA+CGG 0.546622 5.2:+70147727 None:intergenic
ACTTCAACTTCCAAAATCTC+CGG 0.550308 5.2:+70147309 None:intergenic
ATTTGTTGCAAGGGTTGCAA+GGG 0.554218 5.2:-70147209 MS.gene29614:CDS
CGTCATCATTTCAGATTCCA+CGG 0.556208 5.2:+70147803 None:intergenic
GCCAAAAGGTTTGGAGATGA+GGG 0.560345 5.2:+70148174 None:intergenic
CGTGTAGAATTCTGTTCTCG+TGG 0.561606 5.2:+70147655 None:intergenic
GAAAGTTGATGAGTGCCAAA+AGG 0.563443 5.2:+70148160 None:intergenic
AGATTTGAAACAAAAGGTGC+CGG 0.564317 5.2:-70147328 MS.gene29614:CDS
TGACCCCACAGGTGGGCCAG+GGG 0.568030 5.2:-70147286 MS.gene29614:CDS
TTACCCCTGGCCCACCTGTG+GGG 0.572415 5.2:+70147283 None:intergenic
GGTAATGGAAGAAGCAATGA+AGG 0.575495 5.2:-70147265 MS.gene29614:CDS
CGCAGAATAATGCGATGACG+TGG 0.575972 5.2:+70147985 None:intergenic
AGAGAAGAAAGAGTTTGAGA+AGG 0.576468 5.2:-70147235 MS.gene29614:CDS
AGGTCTTGGGTCGGATAAGA+CGG 0.576765 5.2:+70148064 None:intergenic
GAAGTTGAAGTTGACCCCAC+AGG 0.579178 5.2:-70147297 MS.gene29614:CDS
TGGTTTCCGATATGATCAAA+CGG 0.583400 5.2:+70147675 None:intergenic
TTAGGAGAACAGAATTTCAA+CGG 0.584561 5.2:-70147762 MS.gene29614:CDS
AAAGAAGGAAAATCACGAAA+CGG 0.584750 5.2:-70147403 MS.gene29614:CDS
GTGAGAATAGTAGAAATACT+TGG 0.586393 5.2:-70147017 MS.gene29614:CDS
ATTGATGTAAGGTCTTGGGT+CGG 0.612315 5.2:+70148055 None:intergenic
TCTTTCGAACGAAAACAAAA+CGG 0.616759 5.2:+70147378 None:intergenic
ACGAAAAGTGATTTCAAGAG+CGG 0.620559 5.2:+70148097 None:intergenic
GTTGAAGTTGACCCCACAGG+TGG 0.622594 5.2:-70147294 MS.gene29614:CDS
ACGAATCTGGAAGATTCTAA+CGG 0.632285 5.2:-70147514 MS.gene29614:CDS
TGTGTTACTAGAGCGCGTGA+AGG 0.649816 5.2:-70147592 MS.gene29614:CDS
GATTTCAAGAGCGGTTAAAG+CGG 0.651543 5.2:+70148106 None:intergenic
CTTACATCAATAAACGTGAG+TGG 0.652752 5.2:-70148043 MS.gene29614:CDS
GTCATATGTTGTGCAAAGTG+TGG 0.659532 5.2:+70148211 None:intergenic
GAACAAAACACTGATACATG+TGG 0.669666 5.2:-70147954 MS.gene29614:CDS
TTGAAGTTGACCCCACAGGT+GGG 0.675386 5.2:-70147293 MS.gene29614:CDS
TCCAAACTAGGAAACCAAGT+AGG 0.688386 5.2:+70147078 None:intergenic
AAAAGGTTTGGAGATGAGGG+AGG 0.691740 5.2:+70148177 None:intergenic
AACGAGTGAAATTCACGCGG+TGG 0.694602 5.2:-70147538 MS.gene29614:CDS
GCGCTCTAGTAACACACGCG+CGG 0.703640 5.2:+70147599 None:intergenic
TGCTACCAAAACTAGCCACG+TGG 0.752071 5.2:-70147863 MS.gene29614:CDS
AGCAACGAGTGAAATTCACG+CGG 0.772385 5.2:-70147541 MS.gene29614:CDS
CATCATTTCAGATTCCACGG+TGG 0.789723 5.2:+70147806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGGTTATAAACAAGTTT+TGG - chr5.2:70148192-70148211 MS.gene29614:CDS 20.0%
! TCTAATGAATGGATGAAATT+CGG + chr5.2:70147650-70147669 None:intergenic 25.0%
!!! GAGATGAAGAGATTTTTTTA+TGG - chr5.2:70148175-70148194 MS.gene29614:CDS 25.0%
AAAGAAGGAAAATCACGAAA+CGG - chr5.2:70147949-70147968 MS.gene29614:CDS 30.0%
AAGAACGATGAATGAAAAGA+AGG - chr5.2:70147934-70147953 MS.gene29614:CDS 30.0%
GTGAGAATAGTAGAAATACT+TGG - chr5.2:70148335-70148354 MS.gene29614:CDS 30.0%
GTTTATTGATGTAAGGTCTT+GGG + chr5.2:70147304-70147323 None:intergenic 30.0%
TCTTTCGAACGAAAACAAAA+CGG + chr5.2:70147977-70147996 None:intergenic 30.0%
TGAAGATTTACACATGATGA+TGG - chr5.2:70147865-70147884 MS.gene29614:CDS 30.0%
TGTAATTACACGTTAGGTTT+AGG - chr5.2:70147572-70147591 MS.gene29614:CDS 30.0%
TTAGGAGAACAGAATTTCAA+CGG - chr5.2:70147590-70147609 MS.gene29614:CDS 30.0%
TTCAGTTTCAGAAAATCTTC+TGG + chr5.2:70147893-70147912 None:intergenic 30.0%
! AGACTTTTCTTGGGTATTAT+TGG - chr5.2:70148305-70148324 MS.gene29614:CDS 30.0%
! GACTTTTCTTGGGTATTATT+GGG - chr5.2:70148306-70148325 MS.gene29614:CDS 30.0%
! GTGTAGAGATTTGAAACAAA+AGG - chr5.2:70148018-70148037 MS.gene29614:CDS 30.0%
! TGAATTTGGAATGTTTGAGT+AGG - chr5.2:70148239-70148258 MS.gene29614:CDS 30.0%
!! AAAGAGAGTTTTGGTGATTT+AGG + chr5.2:70147065-70147084 None:intergenic 30.0%
!! AAGAGAGTTTTGGTGATTTA+GGG + chr5.2:70147064-70147083 None:intergenic 30.0%
!! CTCGAATGTTTTGTTATCTA+TGG + chr5.2:70147789-70147808 None:intergenic 30.0%
!!! ACAAGTTTTGGTTGTTATGA+TGG - chr5.2:70148204-70148223 MS.gene29614:CDS 30.0%
!!! CAAGTTTTGGTTGTTATGAT+GGG - chr5.2:70148205-70148224 MS.gene29614:CDS 30.0%
ACGAAAAGTGATTTCAAGAG+CGG + chr5.2:70147258-70147277 None:intergenic 35.0%
ACGAATCTGGAAGATTCTAA+CGG - chr5.2:70147838-70147857 MS.gene29614:CDS 35.0%
ACTTCAACTTCCAAAATCTC+CGG + chr5.2:70148046-70148065 None:intergenic 35.0%
AGAGAAGAAAGAGTTTGAGA+AGG - chr5.2:70148117-70148136 MS.gene29614:CDS 35.0%
ATGACGTGTAATTACACGTT+AGG - chr5.2:70147566-70147585 MS.gene29614:CDS 35.0%
CACTCACGTTTATTGATGTA+AGG + chr5.2:70147311-70147330 None:intergenic 35.0%
CGTTTATTGATGTAAGGTCT+TGG + chr5.2:70147305-70147324 None:intergenic 35.0%
CTGAAACTGAAGAAGCAATT+AGG - chr5.2:70147902-70147921 MS.gene29614:CDS 35.0%
CTGAAGAAGCAATTAGGTTT+AGG - chr5.2:70147908-70147927 MS.gene29614:CDS 35.0%
CTTACATCAATAAACGTGAG+TGG - chr5.2:70147309-70147328 MS.gene29614:CDS 35.0%
GAACAAAACACTGATACATG+TGG - chr5.2:70147398-70147417 MS.gene29614:CDS 35.0%
TGGTTTCCGATATGATCAAA+CGG + chr5.2:70147680-70147699 None:intergenic 35.0%
! AAAGTGGGTAAAGAGAGTTT+TGG + chr5.2:70147074-70147093 None:intergenic 35.0%
! AGAAGGTTCATTTGTTGCAA+GGG - chr5.2:70148134-70148153 MS.gene29614:CDS 35.0%
! AGATTTGAAACAAAAGGTGC+CGG - chr5.2:70148024-70148043 MS.gene29614:CDS 35.0%
! ATGCTGCTAAGACTTTTCTT+GGG - chr5.2:70148296-70148315 MS.gene29614:CDS 35.0%
! ATTTTGCTGAGCTCAAGTAT+CGG + chr5.2:70147431-70147450 None:intergenic 35.0%
! GGATTTTTCTTGAACCTACT+TGG - chr5.2:70148260-70148279 MS.gene29614:CDS 35.0%
! TATAGCTTCTGAATTGGTCT+TGG + chr5.2:70147457-70147476 None:intergenic 35.0%
!! AGAGAGTTTTGGTGATTTAG+GGG + chr5.2:70147063-70147082 None:intergenic 35.0%
!! GTTAAAGCGGGTTTTATGAT+GGG + chr5.2:70147236-70147255 None:intergenic 35.0%
ACCTACTTGGTTTCCTAGTT+TGG - chr5.2:70148273-70148292 MS.gene29614:CDS 40.0%
ACGACACCGTTTGATCATAT+CGG - chr5.2:70147671-70147690 MS.gene29614:CDS 40.0%
ACTCATCAACTTTCCCCAAA+TGG - chr5.2:70147201-70147220 MS.gene29614:CDS 40.0%
ATAATGCGATGACGTGGATT+TGG + chr5.2:70147364-70147383 None:intergenic 40.0%
ATTGATGTAAGGTCTTGGGT+CGG + chr5.2:70147300-70147319 None:intergenic 40.0%
ATTTCAAGAGCGGTTAAAGC+GGG + chr5.2:70147248-70147267 None:intergenic 40.0%
CGTCATCATTTCAGATTCCA+CGG + chr5.2:70147552-70147571 None:intergenic 40.0%
CTCATCAACTTTCCCCAAAT+GGG - chr5.2:70147202-70147221 MS.gene29614:CDS 40.0%
GATTTCAAGAGCGGTTAAAG+CGG + chr5.2:70147249-70147268 None:intergenic 40.0%
GTCATATGTTGTGCAAAGTG+TGG + chr5.2:70147144-70147163 None:intergenic 40.0%
GTTCGCTATAGCTTCTGAAT+TGG + chr5.2:70147463-70147482 None:intergenic 40.0%
TAATGCGATGACGTGGATTT+GGG + chr5.2:70147363-70147382 None:intergenic 40.0%
TCCAAACTAGGAAACCAAGT+AGG + chr5.2:70148277-70148296 None:intergenic 40.0%
TTGATGAGTGCCAAAAGGTT+TGG + chr5.2:70147190-70147209 None:intergenic 40.0%
! ATTTGTTGCAAGGGTTGCAA+GGG - chr5.2:70148143-70148162 MS.gene29614:CDS 40.0%
! GAGAAGGTTCATTTGTTGCA+AGG - chr5.2:70148133-70148152 MS.gene29614:CDS 40.0%
! GATGCTGCTAAGACTTTTCT+TGG - chr5.2:70148295-70148314 MS.gene29614:CDS 40.0%
!! ACGGTGTCGTTTCTAATGAA+TGG + chr5.2:70147661-70147680 None:intergenic 40.0%
!! GAAAGTTGATGAGTGCCAAA+AGG + chr5.2:70147195-70147214 None:intergenic 40.0%
!! GGTAATGGAAGAAGCAATGA+AGG - chr5.2:70148087-70148106 MS.gene29614:CDS 40.0%
!! GGTTAAAGCGGGTTTTATGA+TGG + chr5.2:70147237-70147256 None:intergenic 40.0%
!!! TTGTTTTGATTTCTGCCACG+TGG + chr5.2:70147507-70147526 None:intergenic 40.0%
AAAAGGTTTGGAGATGAGGG+AGG + chr5.2:70147178-70147197 None:intergenic 45.0%
AGCAACGAGTGAAATTCACG+CGG - chr5.2:70147811-70147830 MS.gene29614:CDS 45.0%
ATTGCTTCTTCCATTACCCC+TGG + chr5.2:70148085-70148104 None:intergenic 45.0%
CATCATTTCAGATTCCACGG+TGG + chr5.2:70147549-70147568 None:intergenic 45.0%
CGTGTAGAATTCTGTTCTCG+TGG + chr5.2:70147700-70147719 None:intergenic 45.0%
GAAGCTGTTGTGATGTCGTT+TGG + chr5.2:70147119-70147138 None:intergenic 45.0%
GCCAAAAGGTTTGGAGATGA+GGG + chr5.2:70147181-70147200 None:intergenic 45.0%
GGAAGAGGAAGATGGAAAGT+GGG + chr5.2:70147089-70147108 None:intergenic 45.0%
GGGAAGTAGCGAGATGAATT+TGG - chr5.2:70148225-70148244 MS.gene29614:CDS 45.0%
GTCTTAGCAGCATCCAAACT+AGG + chr5.2:70148289-70148308 None:intergenic 45.0%
GTGTAAGTGGAAGAGGAAGA+TGG + chr5.2:70147097-70147116 None:intergenic 45.0%
GTGTCCATGACTCGAAAATC+TGG + chr5.2:70147730-70147749 None:intergenic 45.0%
GTTTGCAAACGTCGTCGTAA+CGG + chr5.2:70147628-70147647 None:intergenic 45.0%
TGCCAAAAGGTTTGGAGATG+AGG + chr5.2:70147182-70147201 None:intergenic 45.0%
TGGAAGAGGAAGATGGAAAG+TGG + chr5.2:70147090-70147109 None:intergenic 45.0%
! CATTTGTTGCAAGGGTTGCA+AGG - chr5.2:70148142-70148161 MS.gene29614:CDS 45.0%
! TCAGAGACTATTTTCCACCG+TGG - chr5.2:70147532-70147551 MS.gene29614:CDS 45.0%
! TCCCTCATCTCCAAACCTTT+TGG - chr5.2:70147177-70147196 MS.gene29614:CDS 45.0%
!! GTGATGTCGTTTGGTGTAAG+TGG + chr5.2:70147110-70147129 None:intergenic 45.0%
!! GTGGATTTGGGATTTTGCGA+GGG + chr5.2:70147351-70147370 None:intergenic 45.0%
!! TCGTTTGGTGTAAGTGGAAG+AGG + chr5.2:70147104-70147123 None:intergenic 45.0%
!!! ACAAAAGGTGCCGGAGATTT+TGG - chr5.2:70148033-70148052 MS.gene29614:CDS 45.0%
!!! CACACCAGATTTTCGAGTCA+TGG - chr5.2:70147723-70147742 MS.gene29614:CDS 45.0%
AACGAGTGAAATTCACGCGG+TGG - chr5.2:70147814-70147833 MS.gene29614:CDS 50.0%
AGGTCTTGGGTCGGATAAGA+CGG + chr5.2:70147291-70147310 None:intergenic 50.0%
CGCAGAATAATGCGATGACG+TGG + chr5.2:70147370-70147389 None:intergenic 50.0%
CGCATTATTCTGCGATGACG+AGG - chr5.2:70147376-70147395 MS.gene29614:CDS 50.0%
GAAGTTGAAGTTGACCCCAC+AGG - chr5.2:70148055-70148074 MS.gene29614:CDS 50.0%
TGCTACCAAAACTAGCCACG+TGG - chr5.2:70147489-70147508 MS.gene29614:CDS 50.0%
TTGAAGTTGACCCCACAGGT+GGG - chr5.2:70148059-70148078 MS.gene29614:CDS 50.0%
! ACGTCGTCGTAACGGAGAAT+CGG + chr5.2:70147620-70147639 None:intergenic 50.0%
! TGTGTTACTAGAGCGCGTGA+AGG - chr5.2:70147760-70147779 MS.gene29614:CDS 50.0%
!! CGTGGATTTGGGATTTTGCG+AGG + chr5.2:70147352-70147371 None:intergenic 50.0%
!!! GGGTTTTATGATGGGCTCGT+TGG + chr5.2:70147228-70147247 None:intergenic 50.0%
!!! TTCTGCCACGTGGCTAGTTT+TGG + chr5.2:70147497-70147516 None:intergenic 50.0%
AGGTTTGGAGATGAGGGAGG+TGG + chr5.2:70147175-70147194 None:intergenic 55.0%
ATGGGCTCGTTGGCCCATTT+GGG + chr5.2:70147218-70147237 None:intergenic 55.0%
GTTGAAGTTGACCCCACAGG+TGG - chr5.2:70148058-70148077 MS.gene29614:CDS 55.0%
TTCACGCGGTGGAACGAATC+TGG - chr5.2:70147825-70147844 MS.gene29614:CDS 55.0%
ATTACCCCTGGCCCACCTGT+GGG + chr5.2:70148073-70148092 None:intergenic 60.0%
GCGCTCTAGTAACACACGCG+CGG + chr5.2:70147756-70147775 None:intergenic 60.0%
TGGGCTCGTTGGCCCATTTG+GGG + chr5.2:70147217-70147236 None:intergenic 60.0%
! GATGGGCTCGTTGGCCCATT+TGG + chr5.2:70147219-70147238 None:intergenic 60.0%
CACAGGTGGGCCAGGGGTAA+TGG - chr5.2:70148072-70148091 MS.gene29614:CDS 65.0%
CATTACCCCTGGCCCACCTG+TGG + chr5.2:70148074-70148093 None:intergenic 65.0%
TTACCCCTGGCCCACCTGTG+GGG + chr5.2:70148072-70148091 None:intergenic 65.0%
TTGACCCCACAGGTGGGCCA+GGG - chr5.2:70148065-70148084 MS.gene29614:CDS 65.0%
GTTGACCCCACAGGTGGGCC+AGG - chr5.2:70148064-70148083 MS.gene29614:CDS 70.0%
TGACCCCACAGGTGGGCCAG+GGG - chr5.2:70148066-70148085 MS.gene29614:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 70147014 70148360 70147014 ID=MS.gene29614
chr5.2 mRNA 70147014 70148360 70147014 ID=MS.gene29614.t1;Parent=MS.gene29614
chr5.2 exon 70147014 70148360 70147014 ID=MS.gene29614.t1.exon1;Parent=MS.gene29614.t1
chr5.2 CDS 70147014 70148360 70147014 ID=cds.MS.gene29614.t1;Parent=MS.gene29614.t1
Gene Sequence

>MS.gene29614

ATGGTTGATTTAGAATGGAAATCAAAGATGCTAAACTCAAACATAGCCCCTAAATCACCAAAACTCTCTTTACCCACTTTCCATCTTCCTCTTCCACTTACACCAAACGACATCACAACAGCTTCATCCACACTTTGCACAACATATGACAACTATCTCCACCTCCCTCATCTCCAAACCTTTTGGCACTCATCAACTTTCCCCAAATGGGCCAACGAGCCCATCATAAAACCCGCTTTAACCGCTCTTGAAATCACTTTTCGTCTCATAACAACCGTCTTATCCGACCCAAGACCTTACATCAATAAACGTGAGTGGACTCGACGTTTCGAGTCCCTCGCAAAATCCCAAATCCACGTCATCGCATTATTCTGCGATGACGAGGAACAAAACACTGATACATGTGGCAAAGCTCCGATACTTGAGCTCAGCAAAATATACCAAGACCAATTCAGAAGCTATAGCGAACAAAGCTTGCTACCAAAACTAGCCACGTGGCAGAAATCAAAACAAATAGCTCAGAGACTATTTTCCACCGTGGAATCTGAAATGATGACGTGTAATTACACGTTAGGTTTAGGAGAACAGAATTTCAACGGTAAACCGATTCTCCGTTACGACGACGTTTGCAAACCGAATTTCATCCATTCATTAGAAACGACACCGTTTGATCATATCGGAAACCACGAGAACAGAATTCTACACGCGACACACCAGATTTTCGAGTCATGGACACACGCCGCGCGTGTGTTACTAGAGCGCGTGAAGGATTCCATAGATAACAAAACATTCGAGAAAGCAACGAGTGAAATTCACGCGGTGGAACGAATCTGGAAGATTCTAACGGAAATTGAAGATTTACACATGATGATGGATCCAGAAGATTTTCTGAAACTGAAGAAGCAATTAGGTTTAGGAACAAGAACGATGAATGAAAAGAAGGAAAATCACGAAACGGTACCGTTTTGTTTTCGTTCGAAAGAGTTTGTTACTATAACGAAAATGTGTAGAGATTTGAAACAAAAGGTGCCGGAGATTTTGGAAGTTGAAGTTGACCCCACAGGTGGGCCAGGGGTAATGGAAGAAGCAATGAAGGTTTATGCAGAGAAGAAAGAGTTTGAGAAGGTTCATTTGTTGCAAGGGTTGCAAGGGATTGAGATAGAGATGAAGAGATTTTTTTATGGTTATAAACAAGTTTTGGTTGTTATGATGGGAAGTAGCGAGATGAATTTGGAATGTTTGAGTAGGATTTTTCTTGAACCTACTTGGTTTCCTAGTTTGGATGCTGCTAAGACTTTTCTTGGGTATTATTGGGAAAATAGTGAGAATAGTAGAAATACTTGGTGA
Protein sequence

>MS.gene29614.t1

MVDLEWKSKMLNSNIAPKSPKLSLPTFHLPLPLTPNDITTASSTLCTTYDNYLHLPHLQTFWHSSTFPKWANEPIIKPALTALEITFRLITTVLSDPRPYINKREWTRRFESLAKSQIHVIALFCDDEEQNTDTCGKAPILELSKIYQDQFRSYSEQSLLPKLATWQKSKQIAQRLFSTVESEMMTCNYTLGLGEQNFNGKPILRYDDVCKPNFIHSLETTPFDHIGNHENRILHATHQIFESWTHAARVLLERVKDSIDNKTFEKATSEIHAVERIWKILTEIEDLHMMMDPEDFLKLKKQLGLGTRTMNEKKENHETVPFCFRSKEFVTITKMCRDLKQKVPEILEVEVDPTGGPGVMEEAMKVYAEKKEFEKVHLLQGLQGIEIEMKRFFYGYKQVLVVMMGSSEMNLECLSRIFLEPTWFPSLDAAKTFLGYYWENSENSRNTW