AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29765

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29765.t1 MTR_5g084850 91.244 434 33 2 1 433 1 430 0.0 810
MS.gene29765.t1 MTR_5g084870 84.988 433 63 1 1 433 1 431 0.0 766
MS.gene29765.t1 MTR_8g079970 74.828 437 106 2 1 433 1 437 0.0 677
MS.gene29765.t1 MTR_8g079950 72.540 437 116 3 1 433 1 437 0.0 654
MS.gene29765.t1 MTR_5g084900 75.597 377 63 2 57 433 7 354 0.0 572
MS.gene29765.t1 MTR_8g079980 56.818 440 179 4 1 433 1 436 5.44e-175 496
MS.gene29765.t1 MTR_3g086020 38.747 431 234 13 1 423 3 411 2.28e-89 277
MS.gene29765.t1 MTR_2g007880 34.649 456 255 12 1 430 15 453 2.72e-76 245
MS.gene29765.t1 MTR_8g467580 31.729 457 269 12 1 431 1 440 5.69e-57 194
MS.gene29765.t1 MTR_1g094790 29.501 461 277 14 1 430 1 444 4.50e-52 181
MS.gene29765.t1 MTR_8g467590 29.867 452 284 13 1 431 1 440 1.97e-51 179
MS.gene29765.t1 MTR_7g110540 47.525 202 70 4 1 190 1 178 7.90e-47 162
MS.gene29765.t1 MTR_7g110540 48.684 152 42 3 231 382 95 210 2.96e-37 136
MS.gene29765.t1 MTR_4g127650 24.944 449 302 12 2 420 9 452 2.42e-31 125
MS.gene29765.t1 MTR_4g007540 22.014 427 278 16 27 420 25 429 1.86e-26 110
MS.gene29765.t1 MTR_7g085990 25.270 463 290 16 3 420 2 453 1.19e-25 108
MS.gene29765.t1 MTR_7g085930 25.482 467 284 16 3 420 6 457 2.44e-25 108
MS.gene29765.t1 MTR_8g075610 22.829 403 275 14 37 417 26 414 1.13e-24 105
MS.gene29765.t1 MTR_4g097090 24.781 456 277 18 11 420 17 452 1.63e-24 105
MS.gene29765.t1 MTR_2g064495 21.652 448 275 16 1 406 1 414 2.26e-24 105
MS.gene29765.t1 MTR_2g105330 21.814 463 285 17 1 420 1 429 2.58e-24 104
MS.gene29765.t1 MTR_5g084920 82.759 58 9 1 1 58 1 57 4.49e-24 95.1
MS.gene29765.t1 MTR_1g040215 24.444 405 255 16 2 379 8 388 2.63e-23 102
MS.gene29765.t1 MTR_5g076700 25.187 401 245 14 9 379 16 391 2.76e-23 102
MS.gene29765.t1 MTR_1g040315 23.448 435 259 17 2 416 8 388 4.75e-22 98.2
MS.gene29765.t1 MTR_4g013050 23.864 440 262 13 10 420 11 406 4.90e-22 97.8
MS.gene29765.t1 MTR_7g086000 23.093 472 311 15 1 428 2 465 8.69e-22 97.8
MS.gene29765.t1 MTR_7g014200 25.513 439 268 15 16 405 20 448 5.33e-21 95.5
MS.gene29765.t1 MTR_1g053315 23.871 465 282 21 1 418 16 455 2.66e-20 93.2
MS.gene29765.t1 MTR_3g026950 22.902 441 291 14 3 405 2 431 4.80e-20 92.4
MS.gene29765.t1 MTR_7g114560 31.977 172 99 5 9 169 16 180 8.92e-19 88.6
MS.gene29765.t1 MTR_8g096530 22.955 440 293 14 11 422 7 428 2.04e-18 87.4
MS.gene29765.t1 MTR_4g094842 24.747 396 253 15 41 405 44 425 3.01e-18 87.0
MS.gene29765.t1 MTR_3g071320 23.358 411 259 16 11 388 13 400 6.24e-18 85.9
MS.gene29765.t1 MTR_7g014620 25.298 419 257 15 24 405 13 412 6.51e-18 85.9
MS.gene29765.t1 MTR_7g014610 25.778 450 269 15 11 405 16 455 1.29e-17 85.1
MS.gene29765.t1 MTR_4g094838 24.129 402 241 12 17 390 29 394 1.62e-17 84.7
MS.gene29765.t1 MTR_1g081660 22.566 452 293 17 9 427 24 451 4.84e-17 83.2
MS.gene29765.t1 MTR_4g094835 23.798 416 247 16 54 427 59 446 5.10e-17 83.2
MS.gene29765.t1 MTR_5g026320 22.770 426 287 16 2 401 17 426 5.74e-17 83.2
MS.gene29765.t1 MTR_7g014160 24.336 452 278 17 8 405 12 453 5.87e-17 83.2
MS.gene29765.t1 MTR_7g114470 22.276 413 265 15 9 392 17 402 1.21e-16 82.0
MS.gene29765.t1 MTR_7g084940 25.183 409 248 15 1 379 14 394 2.12e-16 81.3
MS.gene29765.t1 MTR_1g040320 32.386 176 101 6 9 173 15 183 3.50e-16 80.5
MS.gene29765.t1 MTR_7g084910 23.543 429 245 15 26 415 38 422 3.51e-16 80.5
MS.gene29765.t1 MTR_8g041770 24.272 412 270 17 41 427 47 441 4.66e-16 80.1
MS.gene29765.t1 MTR_7g114550 31.977 172 99 6 9 169 16 180 1.05e-15 79.3
MS.gene29765.t1 MTR_1g011660 30.128 156 102 3 22 172 23 176 1.16e-15 79.0
MS.gene29765.t1 MTR_4g022290 25.169 445 255 20 2 400 3 415 6.16e-15 77.0
MS.gene29765.t1 MTR_0190s0020 24.324 407 265 14 6 390 19 404 6.38e-15 76.6
MS.gene29765.t1 MTR_1g040195 22.940 449 259 22 9 421 15 412 1.92e-14 75.1
MS.gene29765.t1 MTR_4g022800 25.420 417 252 19 3 382 4 398 2.75e-14 74.7
MS.gene29765.t1 MTR_7g114960 24.316 329 216 11 2 310 7 322 4.18e-14 74.3
MS.gene29765.t1 MTR_5g090830 23.373 415 269 15 3 379 10 413 1.00e-13 73.2
MS.gene29765.t1 MTR_4g094832 24.779 339 197 15 82 390 82 392 1.75e-13 72.4
MS.gene29765.t1 MTR_4g022670 25.481 416 252 18 3 382 4 397 1.79e-13 72.4
MS.gene29765.t1 MTR_3g100150 26.829 164 112 4 10 169 18 177 2.38e-13 72.0
MS.gene29765.t1 MTR_5g090810 22.651 415 272 15 3 379 10 413 4.93e-13 71.2
MS.gene29765.t1 MTR_3g102010 23.529 459 310 19 3 430 7 455 2.35e-12 68.9
MS.gene29765.t1 MTR_4g094828 22.997 387 259 12 41 400 46 420 2.76e-12 68.6
MS.gene29765.t1 MTR_7g056087 23.297 455 281 17 3 416 4 431 3.60e-12 68.2
MS.gene29765.t1 MTR_1g035890 27.381 168 112 5 10 171 18 181 1.45e-11 66.2
MS.gene29765.t1 MTR_5g090880 23.161 367 228 12 53 378 61 414 2.01e-11 66.2
MS.gene29765.t1 MTR_4g022760 25.341 367 223 15 2 336 3 350 2.82e-11 65.5
MS.gene29765.t1 MTR_7g114500 33.043 115 65 4 9 118 16 123 4.43e-11 61.2
MS.gene29765.t1 MTR_8g039950 34.167 120 65 5 9 121 15 127 4.46e-11 60.8
MS.gene29765.t1 MTR_7g110610 26.012 173 112 6 1 166 3 166 7.95e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29765.t1 AT3G26040 34.910 444 265 10 1 431 1 433 4.24e-85 267
MS.gene29765.t1 AT1G24430 33.560 441 269 11 1 431 3 429 5.50e-73 236
MS.gene29765.t1 AT1G24420 35.811 444 253 14 3 430 5 432 1.43e-71 232
MS.gene29765.t1 AT1G24420 35.811 444 253 14 3 430 5 432 1.43e-71 232
MS.gene29765.t1 AT4G15390 33.481 451 267 14 1 431 6 443 4.60e-68 223
MS.gene29765.t1 AT4G15390 33.481 451 267 14 1 431 6 443 4.60e-68 223
MS.gene29765.t1 AT3G30280 31.626 449 277 14 1 431 4 440 1.30e-65 217
MS.gene29765.t1 AT5G23970 30.973 452 264 16 1 431 1 425 1.29e-64 214
MS.gene29765.t1 AT5G47950 31.193 436 279 11 1 431 4 423 2.70e-61 205
MS.gene29765.t1 AT5G47980 33.036 448 271 15 1 430 3 439 2.19e-59 200
MS.gene29765.t1 AT4G15400 29.241 448 278 15 2 430 4 431 1.49e-43 158
MS.gene29765.t1 AT5G48930 23.318 446 294 15 1 417 1 427 1.21e-27 114
MS.gene29765.t1 AT2G19070 24.099 444 297 15 10 420 11 447 1.01e-26 112
MS.gene29765.t1 AT5G17540 23.756 442 289 19 9 421 15 437 6.94e-26 109
MS.gene29765.t1 AT5G63560 25.472 424 243 17 11 397 17 404 4.07e-24 104
MS.gene29765.t1 AT3G50270 26.869 428 250 15 3 390 6 410 1.17e-22 100
MS.gene29765.t1 AT5G41040 25.063 399 240 16 11 378 25 395 2.54e-22 99.0
MS.gene29765.t1 AT5G41040 24.311 399 243 16 11 378 41 411 3.07e-22 99.0
MS.gene29765.t1 AT1G65450 25.282 443 277 17 11 421 26 446 3.77e-22 98.6
MS.gene29765.t1 AT5G57840 22.294 462 306 15 1 428 1 443 3.66e-19 89.7
MS.gene29765.t1 AT5G67150 24.295 461 292 21 2 425 4 444 6.30e-19 89.0
MS.gene29765.t1 AT3G48720 22.749 422 263 16 9 398 15 405 7.92e-19 88.6
MS.gene29765.t1 AT3G50280 27.473 364 199 17 57 380 57 395 4.41e-18 86.7
MS.gene29765.t1 AT1G03390 25.672 409 239 23 11 379 25 408 5.26e-18 86.3
MS.gene29765.t1 AT3G03480 23.251 443 281 22 8 416 24 441 9.15e-18 85.5
MS.gene29765.t1 AT3G29670 23.877 423 271 16 19 405 22 429 3.44e-15 77.8
MS.gene29765.t1 AT2G40230 23.261 417 243 15 11 385 13 394 3.45e-15 77.8
MS.gene29765.t1 AT4G31910 23.830 470 285 18 2 420 8 455 7.85e-15 76.6
MS.gene29765.t1 AT1G78990 23.782 349 220 14 59 379 67 397 1.11e-14 76.3
MS.gene29765.t1 AT3G50280 26.838 272 162 10 129 380 11 265 7.78e-14 72.4
MS.gene29765.t1 AT1G32910 24.100 361 219 13 54 379 60 400 3.13e-13 71.6
MS.gene29765.t1 AT1G28680 23.195 457 286 18 3 417 4 437 3.02e-12 68.6
MS.gene29765.t1 AT5G07850 22.318 466 303 20 2 427 7 453 5.47e-12 67.8
MS.gene29765.t1 AT3G62160 22.055 399 258 14 6 381 8 376 6.72e-12 67.4
MS.gene29765.t1 AT4G29250 25.140 179 111 5 5 169 22 191 4.71e-11 65.1

Find 76 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTTTAACACCATTTC+TGG 0.146770 5.3:+68583384 None:intergenic
CCAATGTATGAAGCAGATTT+TGG 0.187042 5.3:-68582904 MS.gene29765:CDS
TTTCATCTTCCTCAAACTTT+TGG 0.201806 5.3:+68583484 None:intergenic
TTATAGCCATTCAAATAAAT+TGG 0.214115 5.3:-68583605 MS.gene29765:CDS
ACCAGCAAAATGATAGTATT+TGG 0.236201 5.3:+68583797 None:intergenic
ATCATTCATGAAGTTGAAAA+TGG 0.240127 5.3:+68583521 None:intergenic
AAAACAATGTGGAGTTTAAA+AGG 0.242380 5.3:-68583362 MS.gene29765:CDS
TATGCATGCAGTTTCAATAA+TGG 0.258613 5.3:-68583238 MS.gene29765:CDS
ATGCATGCAGTTTCAATAAT+GGG 0.289178 5.3:-68583237 MS.gene29765:CDS
AAAGAATAATATTGCTCTAA+TGG 0.303134 5.3:-68582839 MS.gene29765:CDS
TCATAATTTCAAACATTGTT+TGG 0.309894 5.3:+68582712 None:intergenic
TAAGAAGGAAATGGAATTAG+AGG 0.317251 5.3:-68583097 MS.gene29765:CDS
TTAAGATACTTAATCATTGC+AGG 0.328205 5.3:+68583327 None:intergenic
TTGGATGGGGAAAACCAATA+TGG 0.339260 5.3:-68582885 MS.gene29765:CDS
TTTGATCTCTACTTCCGTTT+GGG 0.352047 5.3:+68583865 None:intergenic
AACACCATTTCTGGGAAGAT+AGG 0.377854 5.3:+68583393 None:intergenic
TCTTTCCATTGTAATTCATC+AGG 0.389404 5.3:+68583648 None:intergenic
TGTGAACCAATTTATTTGAA+TGG 0.397182 5.3:+68583599 None:intergenic
CCTAAAATGTTTAGTGAGAT+GGG 0.398562 5.3:-68583024 MS.gene29765:CDS
GATGACAAATAAGAAGGAAA+TGG 0.401593 5.3:-68583106 MS.gene29765:CDS
ACCTTGATCATTACATTCAA+TGG 0.407509 5.3:+68583755 None:intergenic
TCCTAAAATGTTTAGTGAGA+TGG 0.410491 5.3:-68583025 MS.gene29765:CDS
CCGGTAGTGGTGATCCATAT+TGG 0.412542 5.3:+68582871 None:intergenic
TGTTGGTGATGAAGGTTTGA+TGG 0.414036 5.3:+68583971 None:intergenic
TTTCAACTTCATGAATGATT+GGG 0.414945 5.3:-68583517 MS.gene29765:CDS
TGCAATGATTAAGTATCTTA+AGG 0.419600 5.3:-68583325 MS.gene29765:CDS
AAAGTGTAGGTAACATACTT+TGG 0.435524 5.3:-68583140 MS.gene29765:CDS
TTTGGATAAAAGTTGAGATA+AGG 0.439145 5.3:+68583815 None:intergenic
CTCTCTTTAACACCATTTCT+GGG 0.439266 5.3:+68583385 None:intergenic
TTTGCCTATCTTCCCAGAAA+TGG 0.440943 5.3:-68583397 MS.gene29765:CDS
GGAAATGGAATTAGAGGAGT+TGG 0.442056 5.3:-68583091 MS.gene29765:CDS
GAACATGGAAGAGAAATATA+TGG 0.443857 5.3:-68582782 MS.gene29765:CDS
CCAAAATCTGCTTCATACAT+TGG 0.446068 5.3:+68582904 None:intergenic
TGAGAAGGTGTTGGTGATGA+AGG 0.453911 5.3:+68583963 None:intergenic
ATTATTCTTTGAAGAACAAC+CGG 0.455537 5.3:+68582852 None:intergenic
TACAATGGAAAGAAGTGGAT+TGG 0.458160 5.3:-68583638 MS.gene29765:CDS
CCATGCTAAACGATGTCGTC+TGG 0.470338 5.3:+68583205 None:intergenic
CCCTTGAGTTTACTTGATGC+AGG 0.481460 5.3:-68583444 MS.gene29765:CDS
TGTGAATCTTCGCAAAAGAA+TGG 0.485164 5.3:-68583181 MS.gene29765:CDS
ACCATTGAATGTAATGATCA+AGG 0.486582 5.3:-68583756 MS.gene29765:CDS
TGAAAGTAATTCTATTTCCA+TGG 0.487531 5.3:+68584001 None:intergenic
CTTTGAAGAACAACCGGTAG+TGG 0.492059 5.3:+68582858 None:intergenic
ATGTTGTCTATGAAAGAAAG+TGG 0.493811 5.3:+68583927 None:intergenic
GCTCTAATGGATACAAAAGA+TGG 0.508082 5.3:-68582826 MS.gene29765:CDS
GTAATTCATCAGGAAACAAA+GGG 0.514981 5.3:+68583658 None:intergenic
GATACTTAATCATTGCAGGT+TGG 0.516900 5.3:+68583331 None:intergenic
CATTATCAACCAAAAGTTTG+AGG 0.520659 5.3:-68583493 MS.gene29765:CDS
TGTAATTCATCAGGAAACAA+AGG 0.521641 5.3:+68583657 None:intergenic
GTCTATGATGACAAATAAGA+AGG 0.522890 5.3:-68583112 MS.gene29765:CDS
GGATAAAGTTTGAGATGAGA+AGG 0.526691 5.3:+68583948 None:intergenic
CATTGTAGCTGTTGTGAACA+TGG 0.528068 5.3:-68582797 MS.gene29765:CDS
AAGATAGGCAAATCCCTTTG+TGG 0.529715 5.3:+68583408 None:intergenic
GTGTACAAGTTGTAATTGCA+TGG 0.534164 5.3:-68583266 MS.gene29765:CDS
AAAGTAATGGCAAATAGTTA+CGG 0.535719 5.3:+68583898 None:intergenic
TTGGTCTGCAAAATAAAAGA+AGG 0.540813 5.3:-68583072 MS.gene29765:CDS
AACATTGTTTGGATTAAGAG+AGG 0.547055 5.3:+68582723 None:intergenic
GGGTTGTAAAAGTAAAGTAA+TGG 0.551494 5.3:+68583885 None:intergenic
TCCTGCATCAAGTAAACTCA+AGG 0.552025 5.3:+68583443 None:intergenic
TGAATTACAATGGAAAGAAG+TGG 0.558755 5.3:-68583643 MS.gene29765:CDS
CCAATATGGATCACCACTAC+CGG 0.561552 5.3:-68582871 MS.gene29765:CDS
ATAAATTGGTTCACATGTGG+AGG 0.579082 5.3:-68583591 MS.gene29765:CDS
CCAGACGACATCGTTTAGCA+TGG 0.579444 5.3:-68583205 MS.gene29765:CDS
CAAATAAATTGGTTCACATG+TGG 0.583189 5.3:-68583594 MS.gene29765:CDS
GATTAAGTATCTTAAGGCAA+TGG 0.586625 5.3:-68583319 MS.gene29765:CDS
TGCATGCAGTTTCAATAATG+GGG 0.593242 5.3:-68583236 MS.gene29765:CDS
TACACGTGTGGGAGAATGCA+TGG 0.593460 5.3:+68583284 None:intergenic
ATGGATACAAAAGATGGAGA+TGG 0.595788 5.3:-68582820 MS.gene29765:CDS
TTGGTTCACATGTGGAGGAA+TGG 0.604772 5.3:-68583586 MS.gene29765:CDS
GTGCTTGAAGCAAGCTACAG+AGG 0.605493 5.3:-68582977 MS.gene29765:CDS
TGTTTCCTGATGAATTACAA+TGG 0.609516 5.3:-68583653 MS.gene29765:CDS
AATTACAACTTGTACACGTG+TGG 0.612109 5.3:+68583272 None:intergenic
CTAAAATGTTTAGTGAGATG+GGG 0.626836 5.3:-68583023 MS.gene29765:CDS
ATTACAACTTGTACACGTGT+GGG 0.628428 5.3:+68583273 None:intergenic
CCTGCATCAAGTAAACTCAA+GGG 0.655693 5.3:+68583444 None:intergenic
GTTAAAGAGAGAAAACAATG+TGG 0.678799 5.3:-68583373 MS.gene29765:CDS
AGTTTGAGATGAGAAGGTGT+TGG 0.684553 5.3:+68583954 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATAATATTGCTCTAA+TGG - chr5.3:68583880-68583899 MS.gene29765:CDS 20.0%
!! TTATAGCCATTCAAATAAAT+TGG - chr5.3:68583114-68583133 MS.gene29765:CDS 20.0%
! AAAACAATGTGGAGTTTAAA+AGG - chr5.3:68583357-68583376 MS.gene29765:CDS 25.0%
! AAAGTAATGGCAAATAGTTA+CGG + chr5.3:68582824-68582843 None:intergenic 25.0%
! ATCATTCATGAAGTTGAAAA+TGG + chr5.3:68583201-68583220 None:intergenic 25.0%
! TGCAATGATTAAGTATCTTA+AGG - chr5.3:68583394-68583413 MS.gene29765:CDS 25.0%
! TGTGAACCAATTTATTTGAA+TGG + chr5.3:68583123-68583142 None:intergenic 25.0%
! TTAAGATACTTAATCATTGC+AGG + chr5.3:68583395-68583414 None:intergenic 25.0%
! TTTCAACTTCATGAATGATT+GGG - chr5.3:68583202-68583221 MS.gene29765:CDS 25.0%
! TTTGGATAAAAGTTGAGATA+AGG + chr5.3:68582907-68582926 None:intergenic 25.0%
!! ACCAAACACATTTTTATTCT+CGG + chr5.3:68583774-68583793 None:intergenic 25.0%
!! ATTATTCTTTGAAGAACAAC+CGG + chr5.3:68583870-68583889 None:intergenic 25.0%
!! TTTTCAACTTCATGAATGAT+TGG - chr5.3:68583201-68583220 MS.gene29765:CDS 25.0%
AAAGTGTAGGTAACATACTT+TGG - chr5.3:68583579-68583598 MS.gene29765:CDS 30.0%
AACATTGTTTGGATTAAGAG+AGG + chr5.3:68583999-68584018 None:intergenic 30.0%
ACCAGCAAAATGATAGTATT+TGG + chr5.3:68582925-68582944 None:intergenic 30.0%
ACCATTGAATGTAATGATCA+AGG - chr5.3:68582963-68582982 MS.gene29765:CDS 30.0%
ACCTTGATCATTACATTCAA+TGG + chr5.3:68582967-68582986 None:intergenic 30.0%
ATGCATGCAGTTTCAATAAT+GGG - chr5.3:68583482-68583501 MS.gene29765:CDS 30.0%
ATGTTGTCTATGAAAGAAAG+TGG + chr5.3:68582795-68582814 None:intergenic 30.0%
CATTATCAACCAAAAGTTTG+AGG - chr5.3:68583226-68583245 MS.gene29765:CDS 30.0%
CCTAAAATGTTTAGTGAGAT+GGG - chr5.3:68583695-68583714 MS.gene29765:CDS 30.0%
CTAAAATGTTTAGTGAGATG+GGG - chr5.3:68583696-68583715 MS.gene29765:CDS 30.0%
GAACATGGAAGAGAAATATA+TGG - chr5.3:68583937-68583956 MS.gene29765:CDS 30.0%
GATGACAAATAAGAAGGAAA+TGG - chr5.3:68583613-68583632 MS.gene29765:CDS 30.0%
GATTAAGTATCTTAAGGCAA+TGG - chr5.3:68583400-68583419 MS.gene29765:CDS 30.0%
GGGTTGTAAAAGTAAAGTAA+TGG + chr5.3:68582837-68582856 None:intergenic 30.0%
GTAATTCATCAGGAAACAAA+GGG + chr5.3:68583064-68583083 None:intergenic 30.0%
GTCTATGATGACAAATAAGA+AGG - chr5.3:68583607-68583626 MS.gene29765:CDS 30.0%
GTTAAAGAGAGAAAACAATG+TGG - chr5.3:68583346-68583365 MS.gene29765:CDS 30.0%
TAAGAAGGAAATGGAATTAG+AGG - chr5.3:68583622-68583641 MS.gene29765:CDS 30.0%
TATGCATGCAGTTTCAATAA+TGG - chr5.3:68583481-68583500 MS.gene29765:CDS 30.0%
TCCGAGAATAAAAATGTGTT+TGG - chr5.3:68583770-68583789 MS.gene29765:CDS 30.0%
TCCTAAAATGTTTAGTGAGA+TGG - chr5.3:68583694-68583713 MS.gene29765:CDS 30.0%
TCTTTCCATTGTAATTCATC+AGG + chr5.3:68583074-68583093 None:intergenic 30.0%
TGAATTACAATGGAAAGAAG+TGG - chr5.3:68583076-68583095 MS.gene29765:CDS 30.0%
TGTAATTCATCAGGAAACAA+AGG + chr5.3:68583065-68583084 None:intergenic 30.0%
TGTTTCCTGATGAATTACAA+TGG - chr5.3:68583066-68583085 MS.gene29765:CDS 30.0%
TTGGTCTGCAAAATAAAAGA+AGG - chr5.3:68583647-68583666 MS.gene29765:CDS 30.0%
! AATACTATCATTTTGCTGGT+AGG - chr5.3:68582925-68582944 MS.gene29765:CDS 30.0%
! AGCAACAATTTTTCCACAAA+GGG - chr5.3:68583298-68583317 MS.gene29765:CDS 30.0%
! CAAATAAATTGGTTCACATG+TGG - chr5.3:68583125-68583144 MS.gene29765:CDS 30.0%
! TCCAAATACTATCATTTTGC+TGG - chr5.3:68582921-68582940 MS.gene29765:CDS 30.0%
! TTTCATCTTCCTCAAACTTT+TGG + chr5.3:68583238-68583257 None:intergenic 30.0%
!! CTTTACTTTTACAACCCAAA+CGG - chr5.3:68582840-68582859 MS.gene29765:CDS 30.0%
!!! ATGTGTTTGGTTTTAGTAGT+TGG - chr5.3:68583783-68583802 MS.gene29765:CDS 30.0%
!!! CTCAAACTTTTGGTTGATAA+TGG + chr5.3:68583228-68583247 None:intergenic 30.0%
!!! TGATCAAGGTGTGTTATTTT+TGG - chr5.3:68582977-68582996 MS.gene29765:CDS 30.0%
!!! TGTGTTATTTTTGGTCACAA+AGG - chr5.3:68582986-68583005 MS.gene29765:CDS 30.0%
AATTACAACTTGTACACGTG+TGG + chr5.3:68583450-68583469 None:intergenic 35.0%
ATGGATACAAAAGATGGAGA+TGG - chr5.3:68583899-68583918 MS.gene29765:CDS 35.0%
ATTACAACTTGTACACGTGT+GGG + chr5.3:68583449-68583468 None:intergenic 35.0%
CCAAAATCTGCTTCATACAT+TGG + chr5.3:68583818-68583837 None:intergenic 35.0%
CTCTCTTTAACACCATTTCT+GGG + chr5.3:68583337-68583356 None:intergenic 35.0%
GATACTTAATCATTGCAGGT+TGG + chr5.3:68583391-68583410 None:intergenic 35.0%
GTGTACAAGTTGTAATTGCA+TGG - chr5.3:68583453-68583472 MS.gene29765:CDS 35.0%
TACAATGGAAAGAAGTGGAT+TGG - chr5.3:68583081-68583100 MS.gene29765:CDS 35.0%
TCTCTCTTTAACACCATTTC+TGG + chr5.3:68583338-68583357 None:intergenic 35.0%
TGCATGCAGTTTCAATAATG+GGG - chr5.3:68583483-68583502 MS.gene29765:CDS 35.0%
TGTGAATCTTCGCAAAAGAA+TGG - chr5.3:68583538-68583557 MS.gene29765:CDS 35.0%
TTTGATCTCTACTTCCGTTT+GGG + chr5.3:68582857-68582876 None:intergenic 35.0%
! ATAAATTGGTTCACATGTGG+AGG - chr5.3:68583128-68583147 MS.gene29765:CDS 35.0%
! CCAATGTATGAAGCAGATTT+TGG - chr5.3:68583815-68583834 MS.gene29765:CDS 35.0%
! CCATTGTCTGAAAAAAGTGT+AGG - chr5.3:68583566-68583585 MS.gene29765:CDS 35.0%
! CCCATCTCACTAAACATTTT+AGG + chr5.3:68583698-68583717 None:intergenic 35.0%
! GAGCAACAATTTTTCCACAA+AGG - chr5.3:68583297-68583316 MS.gene29765:CDS 35.0%
! GCTCTAATGGATACAAAAGA+TGG - chr5.3:68583893-68583912 MS.gene29765:CDS 35.0%
! GGATAAAGTTTGAGATGAGA+AGG + chr5.3:68582774-68582793 None:intergenic 35.0%
! GTATGAAGCAGATTTTGGAT+GGG - chr5.3:68583820-68583839 MS.gene29765:CDS 35.0%
! TATGAAGCAGATTTTGGATG+GGG - chr5.3:68583821-68583840 MS.gene29765:CDS 35.0%
! TGTATGAAGCAGATTTTGGA+TGG - chr5.3:68583819-68583838 MS.gene29765:CDS 35.0%
! TTTTGATCTCTACTTCCGTT+TGG + chr5.3:68582858-68582877 None:intergenic 35.0%
!! AGGGTTCAACAATTTTTCAG+TGG + chr5.3:68583045-68583064 None:intergenic 35.0%
!! GGGTTCAACAATTTTTCAGT+GGG + chr5.3:68583044-68583063 None:intergenic 35.0%
!!! ACACTTTTTTCAGACAATGG+AGG + chr5.3:68583566-68583585 None:intergenic 35.0%
!!! CCTACACTTTTTTCAGACAA+TGG + chr5.3:68583569-68583588 None:intergenic 35.0%
!!! TTGGTTTTAGTAGTTGGTGT+AGG - chr5.3:68583789-68583808 MS.gene29765:CDS 35.0%
AAGATAGGCAAATCCCTTTG+TGG + chr5.3:68583314-68583333 None:intergenic 40.0%
CATTGTAGCTGTTGTGAACA+TGG - chr5.3:68583922-68583941 MS.gene29765:CDS 40.0%
CCTGCATCAAGTAAACTCAA+GGG + chr5.3:68583278-68583297 None:intergenic 40.0%
GGAAATGGAATTAGAGGAGT+TGG - chr5.3:68583628-68583647 MS.gene29765:CDS 40.0%
TCCTGCATCAAGTAAACTCA+AGG + chr5.3:68583279-68583298 None:intergenic 40.0%
TTGGATGGGGAAAACCAATA+TGG - chr5.3:68583834-68583853 MS.gene29765:CDS 40.0%
TTTGCCTATCTTCCCAGAAA+TGG - chr5.3:68583322-68583341 MS.gene29765:CDS 40.0%
! AACACCATTTCTGGGAAGAT+AGG + chr5.3:68583329-68583348 None:intergenic 40.0%
! AGTTTGAGATGAGAAGGTGT+TGG + chr5.3:68582768-68582787 None:intergenic 40.0%
!! TGTTGGTGATGAAGGTTTGA+TGG + chr5.3:68582751-68582770 None:intergenic 40.0%
CCAATATGGATCACCACTAC+CGG - chr5.3:68583848-68583867 MS.gene29765:CDS 45.0%
CCCTTGAGTTTACTTGATGC+AGG - chr5.3:68583275-68583294 MS.gene29765:CDS 45.0%
TTGGTTCACATGTGGAGGAA+TGG - chr5.3:68583133-68583152 MS.gene29765:CDS 45.0%
! CTTTGAAGAACAACCGGTAG+TGG + chr5.3:68583864-68583883 None:intergenic 45.0%
!! TGAGAAGGTGTTGGTGATGA+AGG + chr5.3:68582759-68582778 None:intergenic 45.0%
CCAGACGACATCGTTTAGCA+TGG - chr5.3:68583514-68583533 MS.gene29765:CDS 50.0%
CCATGCTAAACGATGTCGTC+TGG + chr5.3:68583517-68583536 None:intergenic 50.0%
GTGCTTGAAGCAAGCTACAG+AGG - chr5.3:68583742-68583761 MS.gene29765:CDS 50.0%
TACACGTGTGGGAGAATGCA+TGG + chr5.3:68583438-68583457 None:intergenic 50.0%
! CCGGTAGTGGTGATCCATAT+TGG + chr5.3:68583851-68583870 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 68582720 68584021 68582720 ID=MS.gene29765
chr5.3 mRNA 68582720 68584021 68582720 ID=MS.gene29765.t1;Parent=MS.gene29765
chr5.3 exon 68582720 68584021 68582720 ID=MS.gene29765.t1.exon1;Parent=MS.gene29765.t1
chr5.3 CDS 68582720 68584021 68582720 ID=cds.MS.gene29765.t1;Parent=MS.gene29765.t1
Gene Sequence

>MS.gene29765

ATGGAAATAGAATTACTTTCAAGAGAAACCATCAAACCTTCATCACCAACACCTTCTCATCTCAAACTTTATCCACTTTCTTTCATAGACAACATTATTTTCCGTAACTATTTGCCATTACTTTACTTTTACAACCCAAACGGAAGTAGAGATCAAAATTCAAAAACATCACAACTTCGAAAATCCTTATCTCAACTTTTATCCAAATACTATCATTTTGCTGGTAGGATTAAAAATAAAATTACCATTGAATGTAATGATCAAGGTGTGTTATTTTTGGTCACAAAGGTAAAAAACACACTTTCAGAGATTCTTCAAAATCCCACTGAAAAATTGTTGAACCCTTTGTTTCCTGATGAATTACAATGGAAAGAAGTGGATTGGAGTGCAACTTTTATAGCCATTCAAATAAATTGGTTCACATGTGGAGGAATGGTGATAAGTATTTGCATTAATCACAAAATTGCTGATGCTGCAACCATTTTCAACTTCATGAATGATTGGGCCATTATCAACCAAAAGTTTGAGGAAGATGAAAAAAAGTTATTAGTATCACCCTTGAGTTTACTTGATGCAGGAGCAACAATTTTTCCACAAAGGGATTTGCCTATCTTCCCAGAAATGGTGTTAAAGAGAGAAAACAATGTGGAGTTTAAAAGGTTTGTTTTCCAACCTGCAATGATTAAGTATCTTAAGGCAATGGTAACTTCTAGTTCCATGCATTCTCCCACACGTGTACAAGTTGTAATTGCATGGATTTATATGCATGCAGTTTCAATAATGGGGTTAAATTTCCAGACGACATCGTTTAGCATGGTTGTGAATCTTCGCAAAAGAATGGATCCTCCATTGTCTGAAAAAAGTGTAGGTAACATACTTTGGTTTTCGTCTATGATGACAAATAAGAAGGAAATGGAATTAGAGGAGTTGGTCTGCAAAATAAAAGAAGGATTATCTGAGTGTTGTGACGTTTATCCTAAAATGTTTAGTGAGATGGGGAAAAACAATTTGTTGATATCTGAGTGCTTGAAGCAAGCTACAGAGGTTCAATCCGAGAATAAAAATGTGTTTGGTTTTAGTAGTTGGTGTAGGTTTCCAATGTATGAAGCAGATTTTGGATGGGGAAAACCAATATGGATCACCACTACCGGTTGTTCTTCAAAGAATAATATTGCTCTAATGGATACAAAAGATGGAGATGGCATTGTAGCTGTTGTGAACATGGAAGAGAAATATATGGCTAAATTTGAACATGATTTTGAGCTTCTTCAATATGCCTCTCTTAATCCAAACAATGTTTGA
Protein sequence

>MS.gene29765.t1

MEIELLSRETIKPSSPTPSHLKLYPLSFIDNIIFRNYLPLLYFYNPNGSRDQNSKTSQLRKSLSQLLSKYYHFAGRIKNKITIECNDQGVLFLVTKVKNTLSEILQNPTEKLLNPLFPDELQWKEVDWSATFIAIQINWFTCGGMVISICINHKIADAATIFNFMNDWAIINQKFEEDEKKLLVSPLSLLDAGATIFPQRDLPIFPEMVLKRENNVEFKRFVFQPAMIKYLKAMVTSSSMHSPTRVQVVIAWIYMHAVSIMGLNFQTTSFSMVVNLRKRMDPPLSEKSVGNILWFSSMMTNKKEMELEELVCKIKEGLSECCDVYPKMFSEMGKNNLLISECLKQATEVQSENKNVFGFSSWCRFPMYEADFGWGKPIWITTTGCSSKNNIALMDTKDGDGIVAVVNMEEKYMAKFEHDFELLQYASLNPNNV