Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29889.t1 | PNX96947.1 | 89 | 355 | 30 | 5 | 3 | 354 | 67 | 415 | 3.00E-176 | 627.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29889.t1 | Q680C0 | 28.4 | 342 | 209 | 8 | 6 | 328 | 26 | 350 | 6.9e-33 | 142.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29889.t1 | A0A2K3N1N9 | 89.0 | 355 | 30 | 5 | 3 | 354 | 67 | 415 | 2.1e-176 | 627.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06057 | MS.gene29889 | 0.804925 | 1.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29889.t1 | MTR_3g046880 | 95.787 | 356 | 8 | 3 | 3 | 357 | 63 | 412 | 0.0 | 696 |
| MS.gene29889.t1 | MTR_5g091200 | 71.053 | 342 | 82 | 6 | 3 | 339 | 39 | 368 | 2.54e-174 | 489 |
| MS.gene29889.t1 | MTR_5g091240 | 58.140 | 344 | 130 | 5 | 3 | 340 | 36 | 371 | 9.15e-125 | 379 |
| MS.gene29889.t1 | MTR_5g091240 | 42.623 | 183 | 81 | 7 | 159 | 339 | 514 | 674 | 2.14e-27 | 114 |
| MS.gene29889.t1 | MTR_5g091240 | 32.515 | 163 | 82 | 4 | 178 | 340 | 385 | 519 | 4.48e-12 | 67.8 |
| MS.gene29889.t1 | MTR_5g091230 | 54.459 | 314 | 123 | 8 | 44 | 351 | 7 | 306 | 4.13e-101 | 309 |
| MS.gene29889.t1 | MTR_8g099555 | 34.897 | 341 | 187 | 8 | 4 | 328 | 23 | 344 | 1.50e-56 | 188 |
| MS.gene29889.t1 | MTR_5g028370 | 31.953 | 338 | 187 | 8 | 8 | 325 | 27 | 341 | 1.93e-44 | 156 |
| MS.gene29889.t1 | MTR_5g028370 | 31.953 | 338 | 187 | 8 | 8 | 325 | 39 | 353 | 2.29e-44 | 156 |
| MS.gene29889.t1 | MTR_5g009140 | 29.290 | 338 | 182 | 10 | 7 | 325 | 26 | 325 | 1.25e-33 | 127 |
| MS.gene29889.t1 | MTR_5g009140 | 31.034 | 261 | 142 | 7 | 84 | 325 | 28 | 269 | 2.62e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29889.t1 | AT5G50890 | 69.006 | 342 | 98 | 4 | 3 | 339 | 68 | 406 | 3.40e-169 | 478 |
| MS.gene29889.t1 | AT5G24230 | 32.229 | 332 | 187 | 7 | 6 | 314 | 38 | 354 | 3.92e-47 | 164 |
| MS.gene29889.t1 | AT5G24230 | 32.229 | 332 | 187 | 7 | 6 | 314 | 38 | 354 | 3.92e-47 | 164 |
| MS.gene29889.t1 | AT5G24230 | 32.229 | 332 | 187 | 7 | 6 | 314 | 38 | 354 | 3.92e-47 | 164 |
| MS.gene29889.t1 | AT2G05260 | 30.636 | 346 | 205 | 11 | 6 | 328 | 25 | 358 | 1.42e-45 | 159 |
| MS.gene29889.t1 | AT4G10955 | 29.167 | 336 | 214 | 9 | 6 | 328 | 26 | 350 | 2.02e-44 | 156 |
| MS.gene29889.t1 | AT4G10955 | 29.167 | 336 | 214 | 9 | 6 | 328 | 26 | 350 | 2.02e-44 | 156 |
| MS.gene29889.t1 | AT2G05260 | 32.941 | 255 | 159 | 6 | 6 | 260 | 25 | 267 | 1.32e-41 | 147 |
| MS.gene29889.t1 | AT5G24220 | 27.893 | 337 | 201 | 7 | 6 | 322 | 41 | 355 | 1.67e-40 | 147 |
| MS.gene29889.t1 | AT5G24180 | 28.529 | 340 | 196 | 8 | 6 | 322 | 39 | 354 | 1.05e-36 | 136 |
| MS.gene29889.t1 | AT5G24200 | 29.042 | 334 | 183 | 5 | 7 | 314 | 26 | 331 | 2.02e-32 | 124 |
| MS.gene29889.t1 | AT5G24200 | 29.042 | 334 | 183 | 5 | 7 | 314 | 26 | 331 | 2.02e-32 | 124 |
| MS.gene29889.t1 | AT5G24200 | 29.042 | 334 | 183 | 5 | 7 | 314 | 26 | 331 | 2.02e-32 | 124 |
| MS.gene29889.t1 | AT5G24210 | 28.869 | 336 | 187 | 10 | 7 | 316 | 30 | 339 | 7.76e-26 | 106 |
| MS.gene29889.t1 | AT5G24210 | 28.869 | 336 | 187 | 10 | 7 | 316 | 30 | 339 | 7.76e-26 | 106 |
| MS.gene29889.t1 | AT5G24210 | 28.869 | 336 | 187 | 10 | 7 | 316 | 30 | 339 | 7.76e-26 | 106 |
| MS.gene29889.t1 | AT5G24190 | 23.984 | 246 | 142 | 6 | 104 | 322 | 3 | 230 | 1.09e-15 | 76.3 |
Find 56 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGACAAGTATTATTATT+TGG | 0.224660 | 3.3:-37833032 | None:intergenic |
| AGCTTGAAGAATCATAATTT+TGG | 0.238345 | 3.3:+37832882 | MS.gene29889:CDS |
| TCTTTCTCATTTGATCTATC+AGG | 0.253369 | 3.3:-37832975 | None:intergenic |
| CTTAGTGCTAAAACGGCTTT+TGG | 0.287219 | 3.3:-37832438 | None:intergenic |
| ATGACAGTTCTCTTGTAGTT+TGG | 0.302940 | 3.3:-37832198 | None:intergenic |
| AAAGGTGTTTGTTGTGAATA+AGG | 0.307684 | 3.3:+37833061 | MS.gene29889:CDS |
| CTCGCTTGGGAAAGCCTAAA+AGG | 0.308656 | 3.3:+37832519 | MS.gene29889:CDS |
| TTGAAGGGAATCCACCAATT+TGG | 0.321746 | 3.3:-37832297 | None:intergenic |
| TGTGTAGCAGGACATTCATT+AGG | 0.374475 | 3.3:+37832612 | MS.gene29889:CDS |
| TAATTCTTCTCAAGTATTGC+AGG | 0.375963 | 3.3:+37833220 | MS.gene29889:CDS |
| AAAATGCTCTAGCTCCAAAT+TGG | 0.383483 | 3.3:+37832283 | MS.gene29889:CDS |
| CAGCTTAAATCTTTGTATAC+AGG | 0.386722 | 3.3:+37833182 | MS.gene29889:CDS |
| ATGACCTTCGGTTCCTCGCT+TGG | 0.396243 | 3.3:+37832505 | MS.gene29889:CDS |
| TGACCTTCGGTTCCTCGCTT+GGG | 0.418160 | 3.3:+37832506 | MS.gene29889:CDS |
| AGTAGCAATGTTTGTGTAGC+AGG | 0.421432 | 3.3:+37832600 | MS.gene29889:CDS |
| TCAACTCCTTCGCTGCTTGA+AGG | 0.428651 | 3.3:-37832792 | None:intergenic |
| TGTTCCTCTTAGTGCTAAAA+CGG | 0.439379 | 3.3:-37832445 | None:intergenic |
| AAATCAGTGTCTGATGCATA+TGG | 0.439991 | 3.3:+37832576 | MS.gene29889:CDS |
| TGGTCTGATCAGTACTAAAT+CGG | 0.441069 | 3.3:-37832406 | None:intergenic |
| CGAGGAACCGAAGGTCATCT+TGG | 0.457144 | 3.3:-37832500 | None:intergenic |
| CAGAAGTTTCATGAAGCTCA+TGG | 0.477562 | 3.3:+37833089 | MS.gene29889:CDS |
| TTTCGGTGCAATACTCGAAT+GGG | 0.486400 | 3.3:+37832365 | MS.gene29889:CDS |
| TTTGTTAGCTTGTACTTGAA+GGG | 0.500967 | 3.3:-37832312 | None:intergenic |
| TATACAGGTGGTAGTGGTAG+TGG | 0.501866 | 3.3:+37833197 | MS.gene29889:CDS |
| GAAACAACAACAAGAAGAGT+TGG | 0.503495 | 3.3:+37832844 | MS.gene29889:CDS |
| GCAGGACATTCATTAGGAGC+TGG | 0.512468 | 3.3:+37832618 | MS.gene29889:CDS |
| ATGCTCTAGCTCCAAATTGG+TGG | 0.515850 | 3.3:+37832286 | MS.gene29889:CDS |
| GGAAAATCGTTAGCAAAAGA+AGG | 0.524713 | 3.3:+37832657 | MS.gene29889:CDS |
| TTCTCAAGTATTGCAGGGAA+AGG | 0.542324 | 3.3:+37833226 | MS.gene29889:CDS |
| TCTTTGTATACAGGTGGTAG+TGG | 0.544485 | 3.3:+37833191 | MS.gene29889:CDS |
| AAAGCCTAAAAGGTTCTGTA+AGG | 0.545305 | 3.3:+37832529 | MS.gene29889:CDS |
| GAGACATCCAAGATGACCTT+CGG | 0.546318 | 3.3:+37832493 | MS.gene29889:CDS |
| GGATGTCTCTTCGCATTGTG+TGG | 0.558898 | 3.3:-37832479 | None:intergenic |
| AATTCTTCTCAAGTATTGCA+GGG | 0.565859 | 3.3:+37833221 | MS.gene29889:CDS |
| TACTTGTCATGTTGCTGCAA+AGG | 0.569698 | 3.3:+37833043 | MS.gene29889:CDS |
| GCTATGAGTCTAAGAAACAT+TGG | 0.572525 | 3.3:+37832726 | MS.gene29889:CDS |
| GATTCTCTTCCAAGCTAACT+CGG | 0.574395 | 3.3:-37832757 | None:intergenic |
| ACAAGAAGAGTTGGATGCCA+TGG | 0.575559 | 3.3:+37832853 | MS.gene29889:CDS |
| GATAATAACAAGGAGAATGT+CGG | 0.586582 | 3.3:+37833008 | MS.gene29889:CDS |
| CTCATAGCAATTGAAACAGA+AGG | 0.596681 | 3.3:-37832711 | None:intergenic |
| ATGCTTCCTTCAAGCAGCGA+AGG | 0.596900 | 3.3:+37832786 | MS.gene29889:CDS |
| TTTCCCAAGCGAGGAACCGA+AGG | 0.599086 | 3.3:-37832509 | None:intergenic |
| CTTAAATCTTTGTATACAGG+TGG | 0.607222 | 3.3:+37833185 | MS.gene29889:CDS |
| AACGATGGAAACAACAACGA+TGG | 0.608651 | 3.3:+37832822 | MS.gene29889:CDS |
| AGATCAAATGAGAAAGATGA+TGG | 0.614254 | 3.3:+37832981 | MS.gene29889:CDS |
| TAGCAATTGAAACAGAAGGC+GGG | 0.620328 | 3.3:-37832707 | None:intergenic |
| CTCATGGAATTGAACAATGG+TGG | 0.620564 | 3.3:+37833105 | MS.gene29889:CDS |
| TGATGGTGGTGATAATAACA+AGG | 0.621372 | 3.3:+37832998 | MS.gene29889:CDS |
| GGAGTTGATATCAACAACGA+TGG | 0.639244 | 3.3:+37832807 | MS.gene29889:CDS |
| TTCTTCAAGCTAGTTAACCA+TGG | 0.647087 | 3.3:-37832870 | None:intergenic |
| CTATTGTTCACATAGAGATG+AGG | 0.677824 | 3.3:-37832921 | None:intergenic |
| ATAGCAATTGAAACAGAAGG+CGG | 0.679402 | 3.3:-37832708 | None:intergenic |
| TTAGTACTGATCAGACCAAG+TGG | 0.693039 | 3.3:+37832411 | MS.gene29889:CDS |
| ACACTTATAGACGAAAGAGA+CGG | 0.699729 | 3.3:+37832336 | MS.gene29889:CDS |
| TCAAATGAGAAAGATGATGG+TGG | 0.706323 | 3.3:+37832984 | MS.gene29889:CDS |
| AAGCTCATGGAATTGAACAA+TGG | 0.723699 | 3.3:+37833102 | MS.gene29889:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGTTACAATTGTATAA+AGG | - | chr3.3:37831957-37831976 | None:intergenic | 15.0% |
| !! | TTTATACAATTGTAACTTAT+TGG | + | chr3.3:37831956-37831975 | MS.gene29889:intron | 15.0% |
| !! | ACATGACAAGTATTATTATT+TGG | - | chr3.3:37833035-37833054 | None:intergenic | 20.0% |
| !! | TTTATAATATTGTTTGAGAG+AGG | + | chr3.3:37832038-37832057 | MS.gene29889:intron | 20.0% |
| !!! | ATTATATGAAGTTCTAGTAA+AGG | - | chr3.3:37832144-37832163 | None:intergenic | 20.0% |
| ! | AAGAACGAAAATGAAAAACT+AGG | - | chr3.3:37832095-37832114 | None:intergenic | 25.0% |
| ! | ACTGATAATACAGTCAAATA+AGG | - | chr3.3:37832012-37832031 | None:intergenic | 25.0% |
| ! | AGAACGAAAATGAAAAACTA+GGG | - | chr3.3:37832094-37832113 | None:intergenic | 25.0% |
| ! | ATTTGACTGTATTATCAGTA+TGG | + | chr3.3:37832013-37832032 | MS.gene29889:intron | 25.0% |
| ! | TTTGACTGTATTATCAGTAT+GGG | + | chr3.3:37832014-37832033 | MS.gene29889:intron | 25.0% |
| !! | AGCTTGAAGAATCATAATTT+TGG | + | chr3.3:37832882-37832901 | MS.gene29889:CDS | 25.0% |
| !!! | AAGAATCATAATTTTGGTGT+TGG | + | chr3.3:37832888-37832907 | MS.gene29889:CDS | 25.0% |
| !!! | ATAATTTTGGTGTTGGAAAA+TGG | + | chr3.3:37832895-37832914 | MS.gene29889:CDS | 25.0% |
| !!! | TAATTTTGGTGTTGGAAAAT+GGG | + | chr3.3:37832896-37832915 | MS.gene29889:CDS | 25.0% |
| AGATCAAATGAGAAAGATGA+TGG | + | chr3.3:37832981-37833000 | MS.gene29889:CDS | 30.0% | |
| CAGCTTAAATCTTTGTATAC+AGG | + | chr3.3:37833182-37833201 | MS.gene29889:CDS | 30.0% | |
| CTTAAATCTTTGTATACAGG+TGG | + | chr3.3:37833185-37833204 | MS.gene29889:CDS | 30.0% | |
| GATAATAACAAGGAGAATGT+CGG | + | chr3.3:37833008-37833027 | MS.gene29889:CDS | 30.0% | |
| TCTTTCTCATTTGATCTATC+AGG | - | chr3.3:37832978-37832997 | None:intergenic | 30.0% | |
| TGCTGAAAATATTAGAGACA+TGG | - | chr3.3:37832065-37832084 | None:intergenic | 30.0% | |
| ! | AATTCTTCTCAAGTATTGCA+GGG | + | chr3.3:37833221-37833240 | MS.gene29889:CDS | 30.0% |
| ! | TAATTCTTCTCAAGTATTGC+AGG | + | chr3.3:37833220-37833239 | MS.gene29889:CDS | 30.0% |
| ! | TATGAAGTTCTAGTAAAGGT+TGG | - | chr3.3:37832140-37832159 | None:intergenic | 30.0% |
| ! | TCTCTAATATTTTCAGCAAG+AGG | + | chr3.3:37832067-37832086 | MS.gene29889:intron | 30.0% |
| !! | AAAGGTGTTTGTTGTGAATA+AGG | + | chr3.3:37833061-37833080 | MS.gene29889:CDS | 30.0% |
| !! | TTTGTTAGCTTGTACTTGAA+GGG | - | chr3.3:37832315-37832334 | None:intergenic | 30.0% |
| !!! | TGTCATTGCTTGTTTTATAC+AGG | + | chr3.3:37832215-37832234 | MS.gene29889:CDS | 30.0% |
| !!! | TTTTGTTAGCTTGTACTTGA+AGG | - | chr3.3:37832316-37832335 | None:intergenic | 30.0% |
| AAAGCCTAAAAGGTTCTGTA+AGG | + | chr3.3:37832529-37832548 | MS.gene29889:CDS | 35.0% | |
| AAATCAGTGTCTGATGCATA+TGG | + | chr3.3:37832576-37832595 | MS.gene29889:CDS | 35.0% | |
| AAGCTCATGGAATTGAACAA+TGG | + | chr3.3:37833102-37833121 | MS.gene29889:CDS | 35.0% | |
| AAGTGTGAAGGAAACATAGA+AGG | + | chr3.3:37831898-37831917 | MS.gene29889:intron | 35.0% | |
| ACACTTATAGACGAAAGAGA+CGG | + | chr3.3:37832336-37832355 | MS.gene29889:CDS | 35.0% | |
| ATAGCAATTGAAACAGAAGG+CGG | - | chr3.3:37832711-37832730 | None:intergenic | 35.0% | |
| ATGACAGTTCTCTTGTAGTT+TGG | - | chr3.3:37832201-37832220 | None:intergenic | 35.0% | |
| CTATTGTTCACATAGAGATG+AGG | - | chr3.3:37832924-37832943 | None:intergenic | 35.0% | |
| CTCATAGCAATTGAAACAGA+AGG | - | chr3.3:37832714-37832733 | None:intergenic | 35.0% | |
| GAAACAACAACAAGAAGAGT+TGG | + | chr3.3:37832844-37832863 | MS.gene29889:CDS | 35.0% | |
| GCTATGAGTCTAAGAAACAT+TGG | + | chr3.3:37832726-37832745 | MS.gene29889:CDS | 35.0% | |
| GGAAAATCGTTAGCAAAAGA+AGG | + | chr3.3:37832657-37832676 | MS.gene29889:CDS | 35.0% | |
| TGGTCTGATCAGTACTAAAT+CGG | - | chr3.3:37832409-37832428 | None:intergenic | 35.0% | |
| TGTTCCTCTTAGTGCTAAAA+CGG | - | chr3.3:37832448-37832467 | None:intergenic | 35.0% | |
| TTCTTCAAGCTAGTTAACCA+TGG | - | chr3.3:37832873-37832892 | None:intergenic | 35.0% | |
| ! | AAAATGCTCTAGCTCCAAAT+TGG | + | chr3.3:37832283-37832302 | MS.gene29889:CDS | 35.0% |
| ! | ATACCAATTTTGTTGCATGC+AGG | + | chr3.3:37832169-37832188 | MS.gene29889:intron | 35.0% |
| ! | GAAAGAGACGGTTCAATTTT+CGG | + | chr3.3:37832348-37832367 | MS.gene29889:CDS | 35.0% |
| ! | TCAAATGAGAAAGATGATGG+TGG | + | chr3.3:37832984-37833003 | MS.gene29889:CDS | 35.0% |
| ! | TGAACCTTACAGAACCTTTT+AGG | - | chr3.3:37832536-37832555 | None:intergenic | 35.0% |
| !! | TGATGGTGGTGATAATAACA+AGG | + | chr3.3:37832998-37833017 | MS.gene29889:CDS | 35.0% |
| AACGATGGAAACAACAACGA+TGG | + | chr3.3:37832822-37832841 | MS.gene29889:CDS | 40.0% | |
| AGTAGCAATGTTTGTGTAGC+AGG | + | chr3.3:37832600-37832619 | MS.gene29889:CDS | 40.0% | |
| CAGAAGTTTCATGAAGCTCA+TGG | + | chr3.3:37833089-37833108 | MS.gene29889:CDS | 40.0% | |
| CTCATGGAATTGAACAATGG+TGG | + | chr3.3:37833105-37833124 | MS.gene29889:CDS | 40.0% | |
| CTTCCTGCATGCAACAAAAT+TGG | - | chr3.3:37832175-37832194 | None:intergenic | 40.0% | |
| GATTCTCTTCCAAGCTAACT+CGG | - | chr3.3:37832760-37832779 | None:intergenic | 40.0% | |
| TACTTGTCATGTTGCTGCAA+AGG | + | chr3.3:37833043-37833062 | MS.gene29889:CDS | 40.0% | |
| TAGCAATTGAAACAGAAGGC+GGG | - | chr3.3:37832710-37832729 | None:intergenic | 40.0% | |
| TCTTTGTATACAGGTGGTAG+TGG | + | chr3.3:37833191-37833210 | MS.gene29889:CDS | 40.0% | |
| TGTGTAGCAGGACATTCATT+AGG | + | chr3.3:37832612-37832631 | MS.gene29889:CDS | 40.0% | |
| TTGAAGGGAATCCACCAATT+TGG | - | chr3.3:37832300-37832319 | None:intergenic | 40.0% | |
| ! | CAATTTTGTTGCATGCAGGA+AGG | + | chr3.3:37832173-37832192 | MS.gene29889:intron | 40.0% |
| ! | CTTAGTGCTAAAACGGCTTT+TGG | - | chr3.3:37832441-37832460 | None:intergenic | 40.0% |
| ! | GAAGTTCTAGTAAAGGTTGG+AGG | - | chr3.3:37832137-37832156 | None:intergenic | 40.0% |
| ! | TTCTCAAGTATTGCAGGGAA+AGG | + | chr3.3:37833226-37833245 | MS.gene29889:CDS | 40.0% |
| ! | TTTCGGTGCAATACTCGAAT+GGG | + | chr3.3:37832365-37832384 | MS.gene29889:CDS | 40.0% |
| !! | AAAGCCGTTTTAGCACTAAG+AGG | + | chr3.3:37832441-37832460 | MS.gene29889:CDS | 40.0% |
| !! | GGAGTTGATATCAACAACGA+TGG | + | chr3.3:37832807-37832826 | MS.gene29889:CDS | 40.0% |
| !! | TTAGTACTGATCAGACCAAG+TGG | + | chr3.3:37832411-37832430 | MS.gene29889:CDS | 40.0% |
| !! | TTTGGAGCTAGAGCATTTTC+TGG | - | chr3.3:37832282-37832301 | None:intergenic | 40.0% |
| !! | TTTTCGGTGCAATACTCGAA+TGG | + | chr3.3:37832364-37832383 | MS.gene29889:CDS | 40.0% |
| ACAAGAAGAGTTGGATGCCA+TGG | + | chr3.3:37832853-37832872 | MS.gene29889:CDS | 45.0% | |
| AGGTTGGAGGATTCTCAATC+AGG | - | chr3.3:37832124-37832143 | None:intergenic | 45.0% | |
| GAGAAAAAGCCGAGTTAGCT+TGG | + | chr3.3:37832748-37832767 | MS.gene29889:CDS | 45.0% | |
| GAGACATCCAAGATGACCTT+CGG | + | chr3.3:37832493-37832512 | MS.gene29889:CDS | 45.0% | |
| ! | ATGCTCTAGCTCCAAATTGG+TGG | + | chr3.3:37832286-37832305 | MS.gene29889:CDS | 45.0% |
| !! | TATACAGGTGGTAGTGGTAG+TGG | + | chr3.3:37833197-37833216 | MS.gene29889:CDS | 45.0% |
| !!! | GCTGGTTTTGCACTTCAAGT+TGG | + | chr3.3:37832636-37832655 | MS.gene29889:CDS | 45.0% |
| ATGCTTCCTTCAAGCAGCGA+AGG | + | chr3.3:37832786-37832805 | MS.gene29889:CDS | 50.0% | |
| CTCGCTTGGGAAAGCCTAAA+AGG | + | chr3.3:37832519-37832538 | MS.gene29889:CDS | 50.0% | |
| GCAGGACATTCATTAGGAGC+TGG | + | chr3.3:37832618-37832637 | MS.gene29889:CDS | 50.0% | |
| GGATGTCTCTTCGCATTGTG+TGG | - | chr3.3:37832482-37832501 | None:intergenic | 50.0% | |
| TCAACTCCTTCGCTGCTTGA+AGG | - | chr3.3:37832795-37832814 | None:intergenic | 50.0% | |
| ! | CTTTTAGGCTTTCCCAAGCG+AGG | - | chr3.3:37832521-37832540 | None:intergenic | 50.0% |
| ATGACCTTCGGTTCCTCGCT+TGG | + | chr3.3:37832505-37832524 | MS.gene29889:CDS | 55.0% | |
| CGAGGAACCGAAGGTCATCT+TGG | - | chr3.3:37832503-37832522 | None:intergenic | 55.0% | |
| TGACCTTCGGTTCCTCGCTT+GGG | + | chr3.3:37832506-37832525 | MS.gene29889:CDS | 55.0% | |
| TTTCCCAAGCGAGGAACCGA+AGG | - | chr3.3:37832512-37832531 | None:intergenic | 55.0% | |
| !! | ACGGCTTTTGGTGCACCACT+TGG | - | chr3.3:37832429-37832448 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 37831895 | 37833259 | 37831895 | ID=MS.gene29889 |
| chr3.3 | mRNA | 37831895 | 37833259 | 37831895 | ID=MS.gene29889.t1;Parent=MS.gene29889 |
| chr3.3 | exon | 37831895 | 37831899 | 37831895 | ID=MS.gene29889.t1.exon1;Parent=MS.gene29889.t1 |
| chr3.3 | CDS | 37831895 | 37831899 | 37831895 | ID=cds.MS.gene29889.t1;Parent=MS.gene29889.t1 |
| chr3.3 | exon | 37832191 | 37833259 | 37832191 | ID=MS.gene29889.t1.exon2;Parent=MS.gene29889.t1 |
| chr3.3 | CDS | 37832191 | 37833259 | 37832191 | ID=cds.MS.gene29889.t1;Parent=MS.gene29889.t1 |
| Gene Sequence |
| Protein sequence |
