Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29926.t1 | XP_013445558.1 | 96.2 | 287 | 10 | 1 | 1 | 286 | 181 | 467 | 8.20E-129 | 469.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29926.t1 | Q9FL69 | 41.0 | 290 | 150 | 9 | 11 | 285 | 199 | 482 | 3.4e-38 | 160.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29926.t1 | A0A072TPZ0 | 96.2 | 287 | 10 | 1 | 1 | 286 | 181 | 467 | 5.9e-129 | 469.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059896 | MS.gene29926 | 0.818804 | 1.62E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29926.t1 | MTR_8g464390 | 96.864 | 287 | 8 | 1 | 1 | 286 | 181 | 467 | 0.0 | 556 |
| MS.gene29926.t1 | MTR_8g464390 | 96.864 | 287 | 8 | 1 | 1 | 286 | 130 | 416 | 0.0 | 554 |
| MS.gene29926.t1 | MTR_2g080950 | 65.734 | 286 | 93 | 4 | 1 | 285 | 106 | 387 | 6.82e-110 | 323 |
| MS.gene29926.t1 | MTR_2g080950 | 65.734 | 286 | 93 | 4 | 1 | 285 | 141 | 422 | 1.11e-109 | 324 |
| MS.gene29926.t1 | MTR_2g080950 | 65.734 | 286 | 93 | 4 | 1 | 285 | 192 | 473 | 2.73e-109 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29926.t1 | AT5G54310 | 47.279 | 294 | 126 | 11 | 11 | 285 | 199 | 482 | 1.23e-55 | 187 |
Find 71 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACCCTCGACCGATTTCC+TGG | 0.185878 | 8.3:-45811699 | None:intergenic |
| CCGCAAGTTGCGCCAGTTAA+TGG | 0.208305 | 8.3:+45812735 | MS.gene29926:CDS |
| ACGGGCATTACTCCTGGAAT+TGG | 0.314592 | 8.3:-45812251 | None:intergenic |
| GTTGTCGCTGTGCCATTAAC+TGG | 0.343122 | 8.3:-45812747 | None:intergenic |
| CCAACATTCCTTTCCAAAGT+TGG | 0.356202 | 8.3:+45812213 | MS.gene29926:CDS |
| AGTAATGCCCGTGGGTGGTC+AGG | 0.360119 | 8.3:+45812262 | MS.gene29926:CDS |
| CTGCTGACGATGATAACAAC+TGG | 0.390704 | 8.3:+45810423 | MS.gene29926:CDS |
| GAAAACTGACCCCAGGAAAT+CGG | 0.390927 | 8.3:+45811688 | MS.gene29926:CDS |
| TGTGTAGTGTTTGTCGATAC+CGG | 0.405690 | 8.3:-45812798 | None:intergenic |
| CCTCAATTCCAGAGGTAGGC+TGG | 0.409988 | 8.3:-45811724 | None:intergenic |
| GCTGCTGCTGCAAAATCTGC+TGG | 0.412559 | 8.3:+45812149 | MS.gene29926:CDS |
| TATGGATGATCCAAATGAAA+AGG | 0.416593 | 8.3:+45810379 | MS.gene29926:CDS |
| TCCGTCGCAAAGTCAACTTT+TGG | 0.418709 | 8.3:-45810338 | None:intergenic |
| GCTGCAAGCTACCCAATTCC+AGG | 0.421145 | 8.3:+45812239 | MS.gene29926:CDS |
| CCACCCACGGGCATTACTCC+TGG | 0.430142 | 8.3:-45812257 | None:intergenic |
| AGCTTGCAGCTGGCCAACTT+TGG | 0.431420 | 8.3:-45812226 | None:intergenic |
| CCATAGACAACATGTCAAAA+AGG | 0.442474 | 8.3:-45810361 | None:intergenic |
| TCAACAACAGTTGGCTATGC+TGG | 0.447756 | 8.3:+45812097 | MS.gene29926:CDS |
| AGACTAGTGGCGTACCTAGA+TGG | 0.463412 | 8.3:-45812447 | None:intergenic |
| GTACCCTCGACCGATTTCCT+GGG | 0.464639 | 8.3:-45811698 | None:intergenic |
| CTGCTGCAAAATCTGCTGGT+GGG | 0.464657 | 8.3:+45812153 | MS.gene29926:CDS |
| CGGGCATTACTCCTGGAATT+GGG | 0.471834 | 8.3:-45812250 | None:intergenic |
| AAACATTCCTTGTGTTAATG+AGG | 0.473328 | 8.3:-45812844 | None:intergenic |
| ACATCAGCATATTGAGAAAG+TGG | 0.473639 | 8.3:+45810250 | MS.gene29926:CDS |
| GCTGCTGCAAAATCTGCTGG+TGG | 0.481042 | 8.3:+45812152 | MS.gene29926:CDS |
| GGTACACCCCAGCCTACCTC+TGG | 0.482189 | 8.3:+45811716 | MS.gene29926:CDS |
| CCAGGTTGCTGTACATTAGC+AGG | 0.486353 | 8.3:-45812188 | None:intergenic |
| CCAACTTTGGAAAGGAATGT+TGG | 0.491986 | 8.3:-45812213 | None:intergenic |
| CCAGCCTACCTCTGGAATTG+AGG | 0.492503 | 8.3:+45811724 | MS.gene29926:CDS |
| CTCAATTCCAGAGGTAGGCT+GGG | 0.494670 | 8.3:-45811723 | None:intergenic |
| TGCTATGCATCAACAACAGT+TGG | 0.495669 | 8.3:+45812088 | MS.gene29926:CDS |
| CAGTTCAGTATCCACCATCT+AGG | 0.500344 | 8.3:+45812433 | MS.gene29926:CDS |
| GGAATTGGGTAGCTTGCAGC+TGG | 0.500912 | 8.3:-45812236 | None:intergenic |
| TGCTGCAAAATCTGCTGGTG+GGG | 0.503930 | 8.3:+45812154 | MS.gene29926:CDS |
| CAATTCTCCCTGACCACCCA+CGG | 0.508449 | 8.3:-45812270 | None:intergenic |
| ATCGACAAACACTACACAAA+CGG | 0.512264 | 8.3:+45812803 | MS.gene29926:CDS |
| ATATGCTGATGTTTAGCCAC+TGG | 0.517255 | 8.3:-45810239 | None:intergenic |
| TACTGAACTGAGCTCACCGC+TGG | 0.520904 | 8.3:-45812420 | None:intergenic |
| ATGGATGATCCAAATGAAAA+GGG | 0.524780 | 8.3:+45810380 | MS.gene29926:CDS |
| TATTGAGAAAGTGGAACCTC+TGG | 0.525851 | 8.3:+45810259 | MS.gene29926:CDS |
| CCTGCTAATGTACAGCAACC+TGG | 0.526340 | 8.3:+45812188 | MS.gene29926:CDS |
| CCATTAACTGGCGCAACTTG+CGG | 0.528352 | 8.3:-45812735 | None:intergenic |
| GATGTTTCAGCTTGCACTTG+TGG | 0.530155 | 8.3:-45810284 | None:intergenic |
| TGACCCCAGGAAATCGGTCG+AGG | 0.531096 | 8.3:+45811694 | MS.gene29926:CDS |
| TGATTGAGGTTTACTTGCTA+CGG | 0.534731 | 8.3:-45812769 | None:intergenic |
| GCTTGCACTTGTGGCACCAG+AGG | 0.537743 | 8.3:-45810275 | None:intergenic |
| GACGATGATAACAACTGGGC+AGG | 0.544541 | 8.3:+45810428 | MS.gene29926:CDS |
| GATACCGGAGTTGCTGATTG+AGG | 0.545397 | 8.3:-45812783 | None:intergenic |
| GTAATGCCCGTGGGTGGTCA+GGG | 0.549952 | 8.3:+45812263 | MS.gene29926:CDS |
| AGAATTGCAGAAAATTATGC+AGG | 0.550290 | 8.3:+45812286 | MS.gene29926:CDS |
| TGTTGTTGATGCATAGCAAA+TGG | 0.556232 | 8.3:-45812083 | None:intergenic |
| TGAGCTCACCGCTGGATGAG+TGG | 0.562556 | 8.3:-45812412 | None:intergenic |
| TGGAAAGGAATGTTGGAACC+AGG | 0.563056 | 8.3:-45812206 | None:intergenic |
| GCAGCTGGCCAACTTTGGAA+AGG | 0.567381 | 8.3:-45812221 | None:intergenic |
| AATTCTCCCTGACCACCCAC+GGG | 0.570940 | 8.3:-45812269 | None:intergenic |
| ACAGCAACAGTCTCTTCTGA+TGG | 0.586759 | 8.3:+45812121 | MS.gene29926:CDS |
| TAAACCTCAATCAGCAACTC+CGG | 0.598628 | 8.3:+45812779 | MS.gene29926:CDS |
| AGATCCTCAATTCCAGAGGT+AGG | 0.599401 | 8.3:-45811728 | None:intergenic |
| TCCAAAAGTTGACTTTGCGA+CGG | 0.606093 | 8.3:+45810337 | MS.gene29926:CDS |
| TCAATTCCAGAGGTAGGCTG+GGG | 0.609487 | 8.3:-45811722 | None:intergenic |
| CAGCCGAGAAAACTGACCCC+AGG | 0.631124 | 8.3:+45811681 | MS.gene29926:CDS |
| TGCTGACGATGATAACAACT+GGG | 0.640607 | 8.3:+45810424 | MS.gene29926:CDS |
| GACCCCAGGAAATCGGTCGA+GGG | 0.648203 | 8.3:+45811695 | MS.gene29926:CDS |
| TACCCTCGACCGATTTCCTG+GGG | 0.651020 | 8.3:-45811697 | None:intergenic |
| CTAGTGGCGTACCTAGATGG+TGG | 0.652267 | 8.3:-45812444 | None:intergenic |
| TCTAAAACAGGTAACTCCAG+TGG | 0.660587 | 8.3:+45810223 | None:intergenic |
| AATTCCAGGAGTAATGCCCG+TGG | 0.673377 | 8.3:+45812253 | MS.gene29926:CDS |
| CCAGGAGTAATGCCCGTGGG+TGG | 0.673753 | 8.3:+45812257 | MS.gene29926:CDS |
| ATTCCAGGAGTAATGCCCGT+GGG | 0.678335 | 8.3:+45812254 | MS.gene29926:CDS |
| AAACAGATCCTCAATTCCAG+AGG | 0.685682 | 8.3:-45811732 | None:intergenic |
| CATGACATCCACTCATCCAG+CGG | 0.704013 | 8.3:+45812404 | MS.gene29926:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAATTTACTATTAAC+GGG | - | chr8.3:45810893-45810912 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTAAATAATTTGT+TGG | + | chr8.3:45811094-45811113 | MS.gene29926:intron | 10.0% |
| !!! | TATAGAATTTTTTGTTTAAT+GGG | + | chr8.3:45811297-45811316 | MS.gene29926:intron | 10.0% |
| !!! | TTATAGAATTTTTTGTTTAA+TGG | + | chr8.3:45811296-45811315 | MS.gene29926:intron | 10.0% |
| !! | TCTTATATCTTAAACTTATT+TGG | + | chr8.3:45810704-45810723 | MS.gene29926:intron | 15.0% |
| !! | TTATAATATTAGATATCATG+AGG | - | chr8.3:45810534-45810553 | None:intergenic | 15.0% |
| !! | AGACAATAGTTTATAGATAT+GGG | + | chr8.3:45811542-45811561 | MS.gene29926:intron | 20.0% |
| !! | ATTATAATATGAGCTAGAAT+AGG | + | chr8.3:45810547-45810566 | MS.gene29926:intron | 20.0% |
| !! | ATTATCTATAACTAACTTAG+TGG | + | chr8.3:45811230-45811249 | MS.gene29926:intron | 20.0% |
| !! | TAGACAATAGTTTATAGATA+TGG | + | chr8.3:45811541-45811560 | MS.gene29926:intron | 20.0% |
| !! | TAGTTATAGATAATGATTGA+AGG | - | chr8.3:45811224-45811243 | None:intergenic | 20.0% |
| !! | TGAATAATCTTATGTAAAGT+TGG | + | chr8.3:45812555-45812574 | MS.gene29926:intron | 20.0% |
| !! | TGTTAGTACAAAATGAAATT+AGG | + | chr8.3:45811168-45811187 | MS.gene29926:intron | 20.0% |
| !! | TTTGTATATGTTGTAATGAA+GGG | + | chr8.3:45811271-45811290 | MS.gene29926:intron | 20.0% |
| !!! | AAATGAAGAATGTCTAAAAT+AGG | + | chr8.3:45811135-45811154 | MS.gene29926:intron | 20.0% |
| !!! | TCATTTTTTACATCTTTTTG+TGG | - | chr8.3:45811800-45811819 | None:intergenic | 20.0% |
| !!! | TTATAAGATACTGCTATTTT+AGG | - | chr8.3:45810862-45810881 | None:intergenic | 20.0% |
| !!! | TTTTGTATATGTTGTAATGA+AGG | + | chr8.3:45811270-45811289 | MS.gene29926:intron | 20.0% |
| ! | ACCATATCAAGTCATATAAA+AGG | - | chr8.3:45811875-45811894 | None:intergenic | 25.0% |
| ! | AGAATAGGTATATGAAGTTA+TGG | + | chr8.3:45810562-45810581 | MS.gene29926:intron | 25.0% |
| ! | ATAGTTTATAGATATGGGAA+TGG | + | chr8.3:45811547-45811566 | MS.gene29926:intron | 25.0% |
| ! | ATATTGAAGTGATTAGAGAT+TGG | - | chr8.3:45810734-45810753 | None:intergenic | 25.0% |
| ! | CAGTAGAAATGTTCTTTAAT+TGG | - | chr8.3:45810649-45810668 | None:intergenic | 25.0% |
| ! | CATATACAAAATCTTACTGA+TGG | - | chr8.3:45811261-45811280 | None:intergenic | 25.0% |
| ! | CCAAAGTTCTATAATTATAC+AGG | - | chr8.3:45810781-45810800 | None:intergenic | 25.0% |
| ! | CCTGTATAATTATAGAACTT+TGG | + | chr8.3:45810778-45810797 | MS.gene29926:intron | 25.0% |
| ! | GAATAGGTATATGAAGTTAT+GGG | + | chr8.3:45810563-45810582 | MS.gene29926:intron | 25.0% |
| ! | TAGTTTATAGATATGGGAAT+GGG | + | chr8.3:45811548-45811567 | MS.gene29926:intron | 25.0% |
| ! | TATTGAAGTGATTAGAGATT+GGG | - | chr8.3:45810733-45810752 | None:intergenic | 25.0% |
| ! | TCTTTAAGTGATTAGAGATT+GGG | - | chr8.3:45810807-45810826 | None:intergenic | 25.0% |
| ! | TGTAAAAAAACTGCAACAAT+GGG | - | chr8.3:45812712-45812731 | None:intergenic | 25.0% |
| ! | TTCTTTAAGTGATTAGAGAT+TGG | - | chr8.3:45810808-45810827 | None:intergenic | 25.0% |
| ! | TTGTAAAAAAACTGCAACAA+TGG | - | chr8.3:45812713-45812732 | None:intergenic | 25.0% |
| !! | ACCTTTTATATGACTTGATA+TGG | + | chr8.3:45811871-45811890 | MS.gene29926:intron | 25.0% |
| !! | ATTTTCAAAATGGAAAAGAG+AGG | + | chr8.3:45811341-45811360 | MS.gene29926:intron | 25.0% |
| !! | GTTTAAGATATAAGATACTG+CGG | - | chr8.3:45810699-45810718 | None:intergenic | 25.0% |
| !! | TTGATGCTACATTTTCAAAA+TGG | + | chr8.3:45811331-45811350 | MS.gene29926:intron | 25.0% |
| !! | TTGTACTAACCTTTTCAAAA+AGG | - | chr8.3:45811832-45811851 | None:intergenic | 25.0% |
| !!! | TAAGTATTGATAGCTGAATA+GGG | + | chr8.3:45812492-45812511 | MS.gene29926:intron | 25.0% |
| !!! | TATTATGAGCCTTTTTGAAA+AGG | + | chr8.3:45811820-45811839 | MS.gene29926:CDS | 25.0% |
| !!! | TTAAGTATTGATAGCTGAAT+AGG | + | chr8.3:45812491-45812510 | MS.gene29926:intron | 25.0% |
| AAACATTCCTTGTGTTAATG+AGG | - | chr8.3:45812847-45812866 | None:intergenic | 30.0% | |
| AGAATTGCAGAAAATTATGC+AGG | + | chr8.3:45812286-45812305 | MS.gene29926:CDS | 30.0% | |
| ATGGATGATCCAAATGAAAA+GGG | + | chr8.3:45810380-45810399 | MS.gene29926:CDS | 30.0% | |
| GGTGTCAATCAATTGTAATT+TGG | + | chr8.3:45811491-45811510 | MS.gene29926:intron | 30.0% | |
| TATGGATGATCCAAATGAAA+AGG | + | chr8.3:45810379-45810398 | MS.gene29926:CDS | 30.0% | |
| TATTCACACTCGACATTATT+AGG | - | chr8.3:45811018-45811037 | None:intergenic | 30.0% | |
| TCAGAAAACACTATTGTGAT+GGG | - | chr8.3:45811577-45811596 | None:intergenic | 30.0% | |
| TCATTAAACTAAAGCTCACA+TGG | - | chr8.3:45812319-45812338 | None:intergenic | 30.0% | |
| TTACCTTACACACAGTAAAT+GGG | + | chr8.3:45812035-45812054 | MS.gene29926:intron | 30.0% | |
| TTATACAGGAAAGTGATTAG+AGG | - | chr8.3:45810767-45810786 | None:intergenic | 30.0% | |
| TTTACCTTACACACAGTAAA+TGG | + | chr8.3:45812034-45812053 | MS.gene29926:intron | 30.0% | |
| ! | CATTTTATGATGTGCAGTAT+AGG | + | chr8.3:45811462-45811481 | MS.gene29926:intron | 30.0% |
| ! | GATTTTTCCTCATTAACACA+AGG | + | chr8.3:45812837-45812856 | MS.gene29926:CDS | 30.0% |
| ! | TTGTTTAACTTCTTCCTTCT+TGG | + | chr8.3:45812369-45812388 | MS.gene29926:intron | 30.0% |
| !!! | GTTTTCTGACATTGTTTTTG+AGG | + | chr8.3:45811588-45811607 | MS.gene29926:intron | 30.0% |
| !!! | TGACATTGTTTTTGAGGATT+TGG | + | chr8.3:45811594-45811613 | MS.gene29926:intron | 30.0% |
| AAAATGATGCGATGTGATCA+TGG | - | chr8.3:45811448-45811467 | None:intergenic | 35.0% | |
| AAGAACAACTTCACTCGAAA+TGG | - | chr8.3:45811930-45811949 | None:intergenic | 35.0% | |
| ACATCAGCATATTGAGAAAG+TGG | + | chr8.3:45810250-45810269 | MS.gene29926:CDS | 35.0% | |
| AGTTACTGTACGAGAAAACT+TGG | + | chr8.3:45811046-45811065 | MS.gene29926:intron | 35.0% | |
| ATCGACAAACACTACACAAA+CGG | + | chr8.3:45812803-45812822 | MS.gene29926:CDS | 35.0% | |
| CAACTTGGTTAAACAAAAGG+AGG | - | chr8.3:45812689-45812708 | None:intergenic | 35.0% | |
| CAGAAAACACTATTGTGATG+GGG | - | chr8.3:45811576-45811595 | None:intergenic | 35.0% | |
| CCATAGACAACATGTCAAAA+AGG | - | chr8.3:45810364-45810383 | None:intergenic | 35.0% | |
| CCATGACTAAATGAAGTACA+AGG | - | chr8.3:45812619-45812638 | None:intergenic | 35.0% | |
| CCTTGTACTTCATTTAGTCA+TGG | + | chr8.3:45812616-45812635 | MS.gene29926:intron | 35.0% | |
| CCTTTAAATACACAGACTAG+TGG | - | chr8.3:45812463-45812482 | None:intergenic | 35.0% | |
| CGAGAAAACTTGGAAGAAAA+TGG | + | chr8.3:45811056-45811075 | MS.gene29926:intron | 35.0% | |
| GAAGTACAAGGATTAACACT+GGG | - | chr8.3:45812607-45812626 | None:intergenic | 35.0% | |
| GTCAGAAAACACTATTGTGA+TGG | - | chr8.3:45811578-45811597 | None:intergenic | 35.0% | |
| TAGTGATGTCTTTGAATGAG+AGG | + | chr8.3:45810607-45810626 | MS.gene29926:intron | 35.0% | |
| TATCCCATTTACTGTGTGTA+AGG | - | chr8.3:45812041-45812060 | None:intergenic | 35.0% | |
| TCCATTTCTCATCTCTAACT+CGG | - | chr8.3:45811414-45811433 | None:intergenic | 35.0% | |
| TGAAGTACAAGGATTAACAC+TGG | - | chr8.3:45812608-45812627 | None:intergenic | 35.0% | |
| TGAATAGGGATTTGATCTGA+TGG | + | chr8.3:45812506-45812525 | MS.gene29926:intron | 35.0% | |
| TGTTGTTGATGCATAGCAAA+TGG | - | chr8.3:45812086-45812105 | None:intergenic | 35.0% | |
| TGTTTATAGTCTGACCAAGA+AGG | - | chr8.3:45812386-45812405 | None:intergenic | 35.0% | |
| ! | AGGTTTTCAGTGTATGTTCT+CGG | + | chr8.3:45810448-45810467 | MS.gene29926:intron | 35.0% |
| ! | CCACTAGTCTGTGTATTTAA+AGG | + | chr8.3:45812460-45812479 | MS.gene29926:intron | 35.0% |
| ! | CCTTTTTGACATGTTGTCTA+TGG | + | chr8.3:45810361-45810380 | MS.gene29926:CDS | 35.0% |
| ! | TGATTGAGGTTTACTTGCTA+CGG | - | chr8.3:45812772-45812791 | None:intergenic | 35.0% |
| !!! | ACAGATGGCTTGTTTTGTTT+TGG | + | chr8.3:45811997-45812016 | MS.gene29926:intron | 35.0% |
| !!! | GGTTTTTCAAGAGAAGAACT+TGG | - | chr8.3:45811779-45811798 | None:intergenic | 35.0% |
| AAACAGATCCTCAATTCCAG+AGG | - | chr8.3:45811735-45811754 | None:intergenic | 40.0% | |
| ATATGCTGATGTTTAGCCAC+TGG | - | chr8.3:45810242-45810261 | None:intergenic | 40.0% | |
| CACTGGGTGAAAATTCTATG+CGG | - | chr8.3:45812591-45812610 | None:intergenic | 40.0% | |
| CCAACATTCCTTTCCAAAGT+TGG | + | chr8.3:45812213-45812232 | MS.gene29926:CDS | 40.0% | |
| GATGTGCAGTATAGGTGATT+TGG | + | chr8.3:45811470-45811489 | MS.gene29926:intron | 40.0% | |
| GGAAAAGAGAGGAGACAAAA+GGG | + | chr8.3:45811352-45811371 | MS.gene29926:intron | 40.0% | |
| GGGCAACTTGGTTAAACAAA+AGG | - | chr8.3:45812692-45812711 | None:intergenic | 40.0% | |
| TAAACCTCAATCAGCAACTC+CGG | + | chr8.3:45812779-45812798 | MS.gene29926:CDS | 40.0% | |
| TATTGAGAAAGTGGAACCTC+TGG | + | chr8.3:45810259-45810278 | MS.gene29926:CDS | 40.0% | |
| TGCTATGCATCAACAACAGT+TGG | + | chr8.3:45812088-45812107 | MS.gene29926:CDS | 40.0% | |
| TGCTGACGATGATAACAACT+GGG | + | chr8.3:45810424-45810443 | MS.gene29926:CDS | 40.0% | |
| TGGAAAAGAGAGGAGACAAA+AGG | + | chr8.3:45811351-45811370 | MS.gene29926:intron | 40.0% | |
| TGTGTAGTGTTTGTCGATAC+CGG | - | chr8.3:45812801-45812820 | None:intergenic | 40.0% | |
| ! | CCAACTTTGGAAAGGAATGT+TGG | - | chr8.3:45812216-45812235 | None:intergenic | 40.0% |
| ! | TCCAAAAGTTGACTTTGCGA+CGG | + | chr8.3:45810337-45810356 | MS.gene29926:CDS | 40.0% |
| ! | TCGCAAAGTCAACTTTTGGA+GGG | - | chr8.3:45810337-45810356 | None:intergenic | 40.0% |
| AACTGCAACAATGGGCAACT+TGG | - | chr8.3:45812704-45812723 | None:intergenic | 45.0% | |
| AAGAGAGGAGACAAAAGGGT+AGG | + | chr8.3:45811356-45811375 | MS.gene29926:intron | 45.0% | |
| ACAGCAACAGTCTCTTCTGA+TGG | + | chr8.3:45812121-45812140 | MS.gene29926:CDS | 45.0% | |
| AGATCCTCAATTCCAGAGGT+AGG | - | chr8.3:45811731-45811750 | None:intergenic | 45.0% | |
| AGATGATGATCCGCATTTCG+CGG | + | chr8.3:45810493-45810512 | MS.gene29926:intron | 45.0% | |
| AGGAGACAAAAGGGTAGGTA+AGG | + | chr8.3:45811361-45811380 | MS.gene29926:intron | 45.0% | |
| CAGTTCAGTATCCACCATCT+AGG | + | chr8.3:45812433-45812452 | MS.gene29926:CDS | 45.0% | |
| CTGCTGACGATGATAACAAC+TGG | + | chr8.3:45810423-45810442 | MS.gene29926:CDS | 45.0% | |
| GAAAACTGACCCCAGGAAAT+CGG | + | chr8.3:45811688-45811707 | MS.gene29926:CDS | 45.0% | |
| GATGTTTCAGCTTGCACTTG+TGG | - | chr8.3:45810287-45810306 | None:intergenic | 45.0% | |
| GCAGCTAAATTCACTCGTAC+TGG | - | chr8.3:45811967-45811986 | None:intergenic | 45.0% | |
| GCCGAGTTAGAGATGAGAAA+TGG | + | chr8.3:45811410-45811429 | MS.gene29926:intron | 45.0% | |
| GCTGCTGATCTTTCTACAGA+TGG | + | chr8.3:45811982-45812001 | MS.gene29926:intron | 45.0% | |
| GGAGACAAAAGGGTAGGTAA+GGG | + | chr8.3:45811362-45811381 | MS.gene29926:intron | 45.0% | |
| TAAATTCCAGCCGCGAAATG+CGG | - | chr8.3:45810506-45810525 | None:intergenic | 45.0% | |
| TCAACAACAGTTGGCTATGC+TGG | + | chr8.3:45812097-45812116 | MS.gene29926:CDS | 45.0% | |
| TGGAAAGGAATGTTGGAACC+AGG | - | chr8.3:45812209-45812228 | None:intergenic | 45.0% | |
| ! | GTCGCAAAGTCAACTTTTGG+AGG | - | chr8.3:45810338-45810357 | None:intergenic | 45.0% |
| ! | TCCGTCGCAAAGTCAACTTT+TGG | - | chr8.3:45810341-45810360 | None:intergenic | 45.0% |
| ! | TTTCCTGGGGTCAGTTTTCT+CGG | - | chr8.3:45811687-45811706 | None:intergenic | 45.0% |
| !! | CGCAAAGTCAACTTTTGGAG+GGG | - | chr8.3:45810336-45810355 | None:intergenic | 45.0% |
| !! | GCAAAGTCAACTTTTGGAGG+GGG | - | chr8.3:45810335-45810354 | None:intergenic | 45.0% |
| !! | ATATATAAATTTACTATTAA+CGG | - | chr8.3:45810894-45810913 | None:intergenic | 5.0% |
| AATTCCAGGAGTAATGCCCG+TGG | + | chr8.3:45812253-45812272 | MS.gene29926:CDS | 50.0% | |
| ACGGGCATTACTCCTGGAAT+TGG | - | chr8.3:45812254-45812273 | None:intergenic | 50.0% | |
| AGACTAGTGGCGTACCTAGA+TGG | - | chr8.3:45812450-45812469 | None:intergenic | 50.0% | |
| AGGTAAGGGATGAGAGAGGT+TGG | + | chr8.3:45811376-45811395 | MS.gene29926:intron | 50.0% | |
| ATTCCAGGAGTAATGCCCGT+GGG | + | chr8.3:45812254-45812273 | MS.gene29926:CDS | 50.0% | |
| CATGACATCCACTCATCCAG+CGG | + | chr8.3:45812404-45812423 | MS.gene29926:CDS | 50.0% | |
| CCAGGTTGCTGTACATTAGC+AGG | - | chr8.3:45812191-45812210 | None:intergenic | 50.0% | |
| CCATTAACTGGCGCAACTTG+CGG | - | chr8.3:45812738-45812757 | None:intergenic | 50.0% | |
| CCTGCTAATGTACAGCAACC+TGG | + | chr8.3:45812188-45812207 | MS.gene29926:CDS | 50.0% | |
| CGGGCATTACTCCTGGAATT+GGG | - | chr8.3:45812253-45812272 | None:intergenic | 50.0% | |
| CTCAATTCCAGAGGTAGGCT+GGG | - | chr8.3:45811726-45811745 | None:intergenic | 50.0% | |
| CTGCTGCAAAATCTGCTGGT+GGG | + | chr8.3:45812153-45812172 | MS.gene29926:CDS | 50.0% | |
| GACGATGATAACAACTGGGC+AGG | + | chr8.3:45810428-45810447 | MS.gene29926:CDS | 50.0% | |
| GGTAAGGGATGAGAGAGGTT+GGG | + | chr8.3:45811377-45811396 | MS.gene29926:intron | 50.0% | |
| GGTTGCATGATCTTGCTGCA+TGG | + | chr8.3:45812527-45812546 | MS.gene29926:intron | 50.0% | |
| GTAAGGGATGAGAGAGGTTG+GGG | + | chr8.3:45811378-45811397 | MS.gene29926:intron | 50.0% | |
| TCAATTCCAGAGGTAGGCTG+GGG | - | chr8.3:45811725-45811744 | None:intergenic | 50.0% | |
| TGCTGCAAAATCTGCTGGTG+GGG | + | chr8.3:45812154-45812173 | MS.gene29926:CDS | 50.0% | |
| ! | GATACCGGAGTTGCTGATTG+AGG | - | chr8.3:45812786-45812805 | None:intergenic | 50.0% |
| ! | GCGTCAGAGCCCTTTTCATT+TGG | - | chr8.3:45810392-45810411 | None:intergenic | 50.0% |
| ! | GTTGTCGCTGTGCCATTAAC+TGG | - | chr8.3:45812750-45812769 | None:intergenic | 50.0% |
| AATTCTCCCTGACCACCCAC+GGG | - | chr8.3:45812272-45812291 | None:intergenic | 55.0% | |
| AGCTTGCAGCTGGCCAACTT+TGG | - | chr8.3:45812229-45812248 | None:intergenic | 55.0% | |
| CAATTCTCCCTGACCACCCA+CGG | - | chr8.3:45812273-45812292 | None:intergenic | 55.0% | |
| CCGCAAGTTGCGCCAGTTAA+TGG | + | chr8.3:45812735-45812754 | MS.gene29926:CDS | 55.0% | |
| CCTCAATTCCAGAGGTAGGC+TGG | - | chr8.3:45811727-45811746 | None:intergenic | 55.0% | |
| CTAGTGGCGTACCTAGATGG+TGG | - | chr8.3:45812447-45812466 | None:intergenic | 55.0% | |
| GCTGCAAGCTACCCAATTCC+AGG | + | chr8.3:45812239-45812258 | MS.gene29926:CDS | 55.0% | |
| GCTGCTGCAAAATCTGCTGG+TGG | + | chr8.3:45812152-45812171 | MS.gene29926:CDS | 55.0% | |
| GCTGCTGCTGCAAAATCTGC+TGG | + | chr8.3:45812149-45812168 | MS.gene29926:CDS | 55.0% | |
| GGGTAGGTAAGGGATGAGAG+AGG | + | chr8.3:45811372-45811391 | MS.gene29926:intron | 55.0% | |
| TACTGAACTGAGCTCACCGC+TGG | - | chr8.3:45812423-45812442 | None:intergenic | 55.0% | |
| ! | GCAGCTGGCCAACTTTGGAA+AGG | - | chr8.3:45812224-45812243 | None:intergenic | 55.0% |
| ! | GGAATTGGGTAGCTTGCAGC+TGG | - | chr8.3:45812239-45812258 | None:intergenic | 55.0% |
| ! | GTACCCTCGACCGATTTCCT+GGG | - | chr8.3:45811701-45811720 | None:intergenic | 55.0% |
| ! | TACCCTCGACCGATTTCCTG+GGG | - | chr8.3:45811700-45811719 | None:intergenic | 55.0% |
| ! | TGTACCCTCGACCGATTTCC+TGG | - | chr8.3:45811702-45811721 | None:intergenic | 55.0% |
| !! | CCAGCCTACCTCTGGAATTG+AGG | + | chr8.3:45811724-45811743 | MS.gene29926:CDS | 55.0% |
| AGTAATGCCCGTGGGTGGTC+AGG | + | chr8.3:45812262-45812281 | MS.gene29926:CDS | 60.0% | |
| CAGCCGAGAAAACTGACCCC+AGG | + | chr8.3:45811681-45811700 | MS.gene29926:CDS | 60.0% | |
| GACCCCAGGAAATCGGTCGA+GGG | + | chr8.3:45811695-45811714 | MS.gene29926:CDS | 60.0% | |
| GATGATCCGCATTTCGCGGC+TGG | + | chr8.3:45810497-45810516 | MS.gene29926:intron | 60.0% | |
| GCTTGCACTTGTGGCACCAG+AGG | - | chr8.3:45810278-45810297 | None:intergenic | 60.0% | |
| GTAATGCCCGTGGGTGGTCA+GGG | + | chr8.3:45812263-45812282 | MS.gene29926:CDS | 60.0% | |
| TGACCCCAGGAAATCGGTCG+AGG | + | chr8.3:45811694-45811713 | MS.gene29926:CDS | 60.0% | |
| TGAGCTCACCGCTGGATGAG+TGG | - | chr8.3:45812415-45812434 | None:intergenic | 60.0% | |
| CCACCCACGGGCATTACTCC+TGG | - | chr8.3:45812260-45812279 | None:intergenic | 65.0% | |
| CCAGGAGTAATGCCCGTGGG+TGG | + | chr8.3:45812257-45812276 | MS.gene29926:CDS | 65.0% | |
| GGTACACCCCAGCCTACCTC+TGG | + | chr8.3:45811716-45811735 | MS.gene29926:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 45810233 | 45812878 | 45810233 | ID=MS.gene29926 |
| chr8.3 | mRNA | 45810233 | 45812878 | 45810233 | ID=MS.gene29926.t1;Parent=MS.gene29926 |
| chr8.3 | exon | 45810233 | 45810458 | 45810233 | ID=MS.gene29926.t1.exon1;Parent=MS.gene29926.t1 |
| chr8.3 | CDS | 45810233 | 45810458 | 45810233 | ID=cds.MS.gene29926.t1;Parent=MS.gene29926.t1 |
| chr8.3 | exon | 45811663 | 45811841 | 45811663 | ID=MS.gene29926.t1.exon2;Parent=MS.gene29926.t1 |
| chr8.3 | CDS | 45811663 | 45811841 | 45811663 | ID=cds.MS.gene29926.t1;Parent=MS.gene29926.t1 |
| chr8.3 | exon | 45812068 | 45812307 | 45812068 | ID=MS.gene29926.t1.exon3;Parent=MS.gene29926.t1 |
| chr8.3 | CDS | 45812068 | 45812307 | 45812068 | ID=cds.MS.gene29926.t1;Parent=MS.gene29926.t1 |
| chr8.3 | exon | 45812396 | 45812454 | 45812396 | ID=MS.gene29926.t1.exon4;Parent=MS.gene29926.t1 |
| chr8.3 | CDS | 45812396 | 45812454 | 45812396 | ID=cds.MS.gene29926.t1;Parent=MS.gene29926.t1 |
| chr8.3 | exon | 45812722 | 45812878 | 45812722 | ID=MS.gene29926.t1.exon5;Parent=MS.gene29926.t1 |
| chr8.3 | CDS | 45812722 | 45812878 | 45812722 | ID=cds.MS.gene29926.t1;Parent=MS.gene29926.t1 |
| Gene Sequence |
| Protein sequence |
