Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30263.t1 | RHN77599.1 | 92.4 | 132 | 10 | 0 | 124 | 255 | 195 | 326 | 8.30E-56 | 227.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30263.t1 | Q54UB1 | 30.4 | 102 | 68 | 2 | 128 | 226 | 209 | 310 | 2.3e-06 | 54.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30263.t1 | G7I755 | 92.4 | 132 | 10 | 0 | 124 | 255 | 196 | 327 | 6.0e-56 | 227.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055051 | MS.gene30263 | 0.942812 | 3.70E-102 | -1.69E-46 |
MS.gene056975 | MS.gene30263 | 0.805441 | 1.33E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30263.t1 | MTR_1g024920 | 95.312 | 128 | 6 | 0 | 124 | 251 | 196 | 323 | 1.39e-77 | 242 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30263.t1 | AT2G45730 | 51.128 | 133 | 62 | 2 | 121 | 250 | 190 | 322 | 4.24e-35 | 130 |
Find 53 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTTCTGTGTGTTGGTTTC+TGG | 0.014589 | 7.3:-64515980 | MS.gene30263:CDS |
ATGGTTGGTGGCCTTCTTAC+TGG | 0.198600 | 7.3:-64514448 | MS.gene30263:CDS |
ATCTCTCATTGGTCAGAAAA+TGG | 0.252753 | 7.3:-64512503 | MS.gene30263:CDS |
AAGTGCAATTTACATTTAAT+TGG | 0.266218 | 7.3:+64512624 | None:intergenic |
TTTGCGGTTTCGTCGGATCT+TGG | 0.277905 | 7.3:-64516008 | MS.gene30263:CDS |
GAAAATGGAATTTCTGATCT+TGG | 0.300851 | 7.3:-64512488 | MS.gene30263:intron |
ACACTGCCGTCATCATGTTT+TGG | 0.317670 | 7.3:+64512653 | None:intergenic |
TGACATTCTCGTTGTTGATA+TGG | 0.336210 | 7.3:-64514467 | MS.gene30263:CDS |
CATTAGCCATTGAAAGTAGA+AGG | 0.344540 | 7.3:+64514503 | None:intergenic |
TTGCGGTTTCGTCGGATCTT+GGG | 0.360644 | 7.3:-64516007 | MS.gene30263:CDS |
GGTGCAGTGGCAAAGCGTTT+AGG | 0.381408 | 7.3:-64514427 | MS.gene30263:CDS |
TCTCTTGCTCCTGCTTGATT+CGG | 0.386260 | 7.3:+64515955 | None:intergenic |
GTTTCGTCGGATCTTGGGTT+TGG | 0.402535 | 7.3:-64516002 | MS.gene30263:CDS |
CCAATCATTCATTCACGAAA+AGG | 0.404191 | 7.3:-64515920 | MS.gene30263:CDS |
CGTTCTTCTTCCTCACGAAT+CGG | 0.410511 | 7.3:+64515862 | None:intergenic |
ATTGTCCCTTCTACTTTCAA+TGG | 0.417484 | 7.3:-64514509 | MS.gene30263:CDS |
CCTCGCCATGTTTCTGCTAA+AGG | 0.423936 | 7.3:-64516915 | MS.gene30263:CDS |
GGGTTTGGCTTTCTGTGTGT+TGG | 0.435311 | 7.3:-64515987 | MS.gene30263:CDS |
TTGTGACAACAAGTCAGAAA+TGG | 0.435540 | 7.3:+64512697 | None:intergenic |
TTCTTCCTCACGAATCGGTC+GGG | 0.436012 | 7.3:+64515867 | None:intergenic |
TTACCTCTTTCGATTCTGTT+CGG | 0.438439 | 7.3:+64515810 | None:intergenic |
TTATTTATTGCAGAATTGTA+AGG | 0.438615 | 7.3:-64512724 | MS.gene30263:intron |
AGCAGGAGCAAGAGAGGAAG+TGG | 0.456569 | 7.3:-64515947 | MS.gene30263:CDS |
AACAACACAAACGTTCAAAT+CGG | 0.490303 | 7.3:-64515897 | MS.gene30263:CDS |
CTCGTTGTTGATATGGTTGG+TGG | 0.492274 | 7.3:-64514460 | MS.gene30263:CDS |
CTTCTTCCTCACGAATCGGT+CGG | 0.503463 | 7.3:+64515866 | None:intergenic |
ATACATGAACCTTGTAGATA+AGG | 0.513706 | 7.3:+64516953 | None:intergenic |
ATTCTCGTTGTTGATATGGT+TGG | 0.536995 | 7.3:-64514463 | MS.gene30263:CDS |
CTTCAAAATCAGCTGGTCCC+TGG | 0.539572 | 7.3:-64516889 | MS.gene30263:intron |
GAATCAAGCAGGAGCAAGAG+AGG | 0.542256 | 7.3:-64515953 | MS.gene30263:CDS |
TTGCCACTGCACCAGTAAGA+AGG | 0.543209 | 7.3:+64514437 | None:intergenic |
TCTTAGACATGCACCATCCA+TGG | 0.543534 | 7.3:-64514129 | MS.gene30263:CDS |
AAGGTTCCTTCAAAATCAGC+TGG | 0.544558 | 7.3:-64516896 | MS.gene30263:CDS |
GCATGGAGGAAATCTCTCAT+TGG | 0.552511 | 7.3:-64512514 | MS.gene30263:CDS |
AAATATCCTCACAATATCCA+TGG | 0.553785 | 7.3:+64514112 | None:intergenic |
ATGGCGAGGAGATGATCTGT+TGG | 0.557613 | 7.3:+64516929 | None:intergenic |
TTTCTGGAACCGAATCAAGC+AGG | 0.568528 | 7.3:-64515964 | MS.gene30263:CDS |
AAACCGAACAGAATCGAAAG+AGG | 0.586011 | 7.3:-64515813 | MS.gene30263:intron |
TGGCCTTCTTACTGGTGCAG+TGG | 0.592640 | 7.3:-64514440 | MS.gene30263:CDS |
GCAGTGGCAAAGCGTTTAGG+AGG | 0.600305 | 7.3:-64514424 | MS.gene30263:intron |
ATCCTCACAATATCCATGGA+TGG | 0.603371 | 7.3:+64514116 | None:intergenic |
CACCATCCATGGATATTGTG+AGG | 0.613262 | 7.3:-64514118 | MS.gene30263:CDS |
ATTAGCCATTGAAAGTAGAA+GGG | 0.613664 | 7.3:+64514504 | None:intergenic |
AGGAACCTTTAGCAGAAACA+TGG | 0.619859 | 7.3:+64516910 | None:intergenic |
CAAAATCCAAAACATGATGA+CGG | 0.624523 | 7.3:-64512659 | MS.gene30263:CDS |
AATGTGTGCATCAGTCAGCA+TGG | 0.631729 | 7.3:-64512531 | MS.gene30263:CDS |
TAAGCGATGAAATCTGCAAG+AGG | 0.636208 | 7.3:-64514085 | MS.gene30263:intron |
CTGATTCAGATTCTTGTGTG+TGG | 0.637211 | 7.3:-64514536 | MS.gene30263:intron |
CGATTCGTGAGGAAGAAGAA+CGG | 0.665989 | 7.3:-64515861 | MS.gene30263:CDS |
TAGATCCCGACCGATTCGTG+AGG | 0.670906 | 7.3:-64515872 | MS.gene30263:CDS |
AAAACATGATGACGGCAGTG+TGG | 0.681492 | 7.3:-64512651 | MS.gene30263:CDS |
CCTTTAGCAGAAACATGGCG+AGG | 0.715300 | 7.3:+64516915 | None:intergenic |
GTGTGCATCAGTCAGCATGG+AGG | 0.745962 | 7.3:-64512528 | MS.gene30263:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAACTATTATATTATTGAAT+TGG | - | chr7.3:64514761-64514780 | MS.gene30263:intron | 10.0% |
!!! | TGCTTTTTTTTTTTTTAATA+TGG | - | chr7.3:64515010-64515029 | MS.gene30263:intron | 10.0% |
!!! | TTTTAACTCAAAAAAATAAT+TGG | + | chr7.3:64515341-64515360 | None:intergenic | 10.0% |
!! | AAAAATGACTTATTAAAACA+GGG | - | chr7.3:64512975-64512994 | MS.gene30263:intron | 15.0% |
!! | AAAACGACATATTAATAAAA+TGG | - | chr7.3:64516033-64516052 | MS.gene30263:CDS | 15.0% |
!! | GTTTAAAAAAAAAGTAATTG+TGG | + | chr7.3:64515814-64515833 | None:intergenic | 15.0% |
!!! | ATATTTTAAGAAATAGAAAG+AGG | - | chr7.3:64513685-64513704 | MS.gene30263:intron | 15.0% |
!!! | GTAGTTTTTTTTTTTTTTGA+AGG | - | chr7.3:64514523-64514542 | MS.gene30263:CDS | 15.0% |
!!! | TATAATGCTTTGAAATAAAT+TGG | + | chr7.3:64514704-64514723 | None:intergenic | 15.0% |
!!! | TGTTAAACATTTTTTTTAAC+AGG | + | chr7.3:64513892-64513911 | None:intergenic | 15.0% |
!!! | TTTTTTGTTTTTTAAGTATC+CGG | - | chr7.3:64516200-64516219 | MS.gene30263:intron | 15.0% |
!! | AAAAGAGATAGAATGAAATA+AGG | + | chr7.3:64514230-64514249 | None:intergenic | 20.0% |
!! | AACTTCATTCAATAATTGAA+TGG | + | chr7.3:64514194-64514213 | None:intergenic | 20.0% |
!! | AAGTGCAATTTACATTTAAT+TGG | + | chr7.3:64516752-64516771 | None:intergenic | 20.0% |
!! | ACTTCATTCAATAATTGAAT+GGG | + | chr7.3:64514193-64514212 | None:intergenic | 20.0% |
!! | CAAAAATGACTTATTAAAAC+AGG | - | chr7.3:64512974-64512993 | MS.gene30263:intron | 20.0% |
!! | TATACATGAATTTGTAAGAT+TGG | + | chr7.3:64515653-64515672 | None:intergenic | 20.0% |
!! | TTAAAAAATAAGACCCAAAT+TGG | - | chr7.3:64513111-64513130 | MS.gene30263:intron | 20.0% |
!! | TTATTTATTGCAGAATTGTA+AGG | - | chr7.3:64516649-64516668 | MS.gene30263:intron | 20.0% |
!!! | ATGTTTAACAAATTTGTTTG+TGG | - | chr7.3:64513902-64513921 | MS.gene30263:intron | 20.0% |
!!! | ATTAAAACAGGGATTTTAAA+TGG | - | chr7.3:64512986-64513005 | MS.gene30263:intron | 20.0% |
!!! | GAAAAATGAAAGCTTTAAAA+AGG | + | chr7.3:64515438-64515457 | None:intergenic | 20.0% |
!!! | GTTTATTGATTAAGTAATTG+TGG | + | chr7.3:64515841-64515860 | None:intergenic | 20.0% |
!!! | TCAAATAGTAGAAGATTTTA+TGG | - | chr7.3:64514148-64514167 | MS.gene30263:CDS | 20.0% |
!!! | TGTTTAACAAATTTGTTTGT+GGG | - | chr7.3:64513903-64513922 | MS.gene30263:intron | 20.0% |
!!! | TTAAAACAGGGATTTTAAAT+GGG | - | chr7.3:64512987-64513006 | MS.gene30263:intron | 20.0% |
!!! | TTCATTTTTCAGAAATAGTT+TGG | - | chr7.3:64515448-64515467 | MS.gene30263:intron | 20.0% |
!!! | TTTTTGTTTTTTAAGTATCC+GGG | - | chr7.3:64516201-64516220 | MS.gene30263:intron | 20.0% |
! | AAAAATCTACCTTATCTACA+AGG | - | chr7.3:64512411-64512430 | MS.gene30263:intron | 25.0% |
! | AGACCATTAGATATTAAATC+GGG | - | chr7.3:64513056-64513075 | MS.gene30263:intron | 25.0% |
! | ATACCTATTAATTCAACACA+TGG | + | chr7.3:64516453-64516472 | None:intergenic | 25.0% |
! | ATAGAGTAGCATATTAAAAG+AGG | + | chr7.3:64512748-64512767 | None:intergenic | 25.0% |
! | ATTAACGGTTTATTGGAAAT+AGG | + | chr7.3:64512541-64512560 | None:intergenic | 25.0% |
! | ATTAAGCAAAAAACAACACT+CGG | + | chr7.3:64513809-64513828 | None:intergenic | 25.0% |
! | CGAAAAAAAATTTGAACAGA+AGG | + | chr7.3:64513619-64513638 | None:intergenic | 25.0% |
! | CTATGTATATATCCTTGAAT+TGG | - | chr7.3:64514730-64514749 | MS.gene30263:intron | 25.0% |
! | GAGACCATTAGATATTAAAT+CGG | - | chr7.3:64513055-64513074 | MS.gene30263:intron | 25.0% |
! | TAGCATATTAAAAGAGGAAA+TGG | + | chr7.3:64512742-64512761 | None:intergenic | 25.0% |
! | TAGTGTACTAATACATTATC+TGG | - | chr7.3:64514406-64514425 | MS.gene30263:intron | 25.0% |
! | TGGAAATATTAACGGTTTAT+TGG | + | chr7.3:64512548-64512567 | None:intergenic | 25.0% |
! | TTAACTAAATGATTCATCAG+AGG | + | chr7.3:64516535-64516554 | None:intergenic | 25.0% |
! | TTACCCGATTTAATATCTAA+TGG | + | chr7.3:64513062-64513081 | None:intergenic | 25.0% |
! | TTCCATTCTTAACAATCTTT+GGG | - | chr7.3:64515112-64515131 | MS.gene30263:intron | 25.0% |
! | TTTCCATTCTTAACAATCTT+TGG | - | chr7.3:64515111-64515130 | MS.gene30263:intron | 25.0% |
!! | AACTTTTCCTAGTAAACTAA+GGG | - | chr7.3:64514280-64514299 | MS.gene30263:intron | 25.0% |
!! | ATCTAACGTTAATGTTTTAC+AGG | - | chr7.3:64515197-64515216 | MS.gene30263:intron | 25.0% |
!! | GTTTAACAAATTTGTTTGTG+GGG | - | chr7.3:64513904-64513923 | MS.gene30263:intron | 25.0% |
!! | TAACTTTTCCTAGTAAACTA+AGG | - | chr7.3:64514279-64514298 | MS.gene30263:intron | 25.0% |
!! | TCCTTTGTTATATTGTTGTT+GGG | - | chr7.3:64514254-64514273 | MS.gene30263:intron | 25.0% |
!! | TGTAGATAAGGTAGATTTTT+GGG | + | chr7.3:64512411-64512430 | None:intergenic | 25.0% |
!! | TTGTAGATAAGGTAGATTTT+TGG | + | chr7.3:64512412-64512431 | None:intergenic | 25.0% |
!!! | AGAACGATTATTTTAGAAAG+AGG | + | chr7.3:64513160-64513179 | None:intergenic | 25.0% |
!!! | TCTTTTTTCTTGGTTGTTTT+GGG | + | chr7.3:64516010-64516029 | None:intergenic | 25.0% |
!!! | TGAAGTTTTGTTTCTTTTGT+CGG | - | chr7.3:64516608-64516627 | MS.gene30263:intron | 25.0% |
!!! | TTCTTTTTTCTTGGTTGTTT+TGG | + | chr7.3:64516011-64516030 | None:intergenic | 25.0% |
AAAATGGACAAGTCCAATTT+GGG | + | chr7.3:64513127-64513146 | None:intergenic | 30.0% | |
AAATATCCTCACAATATCCA+TGG | + | chr7.3:64515264-64515283 | None:intergenic | 30.0% | |
AACAACACAAACGTTCAAAT+CGG | - | chr7.3:64513476-64513495 | MS.gene30263:intron | 30.0% | |
AATGAGATTAGTGTGTGTAT+TGG | - | chr7.3:64516090-64516109 | MS.gene30263:intron | 30.0% | |
ACCAAATATGTTATCTCACA+TGG | + | chr7.3:64514617-64514636 | None:intergenic | 30.0% | |
AGCTTAGCTGGAAATATTAA+CGG | + | chr7.3:64512556-64512575 | None:intergenic | 30.0% | |
AGGAATTAAACTACGATAAG+AGG | + | chr7.3:64512895-64512914 | None:intergenic | 30.0% | |
ATACATGAACCTTGTAGATA+AGG | + | chr7.3:64512423-64512442 | None:intergenic | 30.0% | |
ATGAGATTAGTGTGTGTATT+GGG | - | chr7.3:64516091-64516110 | MS.gene30263:intron | 30.0% | |
ATGTATTAGTACACTAGATC+TGG | + | chr7.3:64514402-64514421 | None:intergenic | 30.0% | |
ATTAGCCATTGAAAGTAGAA+GGG | + | chr7.3:64514872-64514891 | None:intergenic | 30.0% | |
CAAAATCCAAAACATGATGA+CGG | - | chr7.3:64516714-64516733 | MS.gene30263:intron | 30.0% | |
CACGACATATGATAAATTGT+TGG | + | chr7.3:64516808-64516827 | None:intergenic | 30.0% | |
CATGAATTTGTAAGATTGGT+AGG | + | chr7.3:64515649-64515668 | None:intergenic | 30.0% | |
CATGGACATTTCAATCAATT+AGG | - | chr7.3:64514305-64514324 | MS.gene30263:intron | 30.0% | |
GAAAATGGAATTTCTGATCT+TGG | - | chr7.3:64516885-64516904 | MS.gene30263:intron | 30.0% | |
GATAAATTGTTGGTACAGTA+AGG | + | chr7.3:64516798-64516817 | None:intergenic | 30.0% | |
GTTAGTTAGAAACCAATTCA+AGG | + | chr7.3:64514745-64514764 | None:intergenic | 30.0% | |
TAGCCATGTGTTGAATTAAT+AGG | - | chr7.3:64516447-64516466 | MS.gene30263:intron | 30.0% | |
TCCATGTGAGATAACATATT+TGG | - | chr7.3:64514613-64514632 | MS.gene30263:intron | 30.0% | |
TCCCAACAACAATATAACAA+AGG | + | chr7.3:64514258-64514277 | None:intergenic | 30.0% | |
TTTCTCTTTCAGTGAATCAA+CGG | + | chr7.3:64515408-64515427 | None:intergenic | 30.0% | |
! | CTCCTTTGTTATATTGTTGT+TGG | - | chr7.3:64514253-64514272 | MS.gene30263:intron | 30.0% |
! | CTTCAATTTTGTATGGTGAT+TGG | + | chr7.3:64516509-64516528 | None:intergenic | 30.0% |
! | GAATACTTTTGATCGTGAAT+CGG | - | chr7.3:64515598-64515617 | MS.gene30263:intron | 30.0% |
! | GAGGATACTTCAATTTTGTA+TGG | + | chr7.3:64516516-64516535 | None:intergenic | 30.0% |
! | GTAGATAAGGTAGATTTTTG+GGG | + | chr7.3:64512410-64512429 | None:intergenic | 30.0% |
! | TCGTTTTGCTTCTTTTTTCT+TGG | + | chr7.3:64516020-64516039 | None:intergenic | 30.0% |
! | TTTGATTTCTACTCTTGTAC+AGG | + | chr7.3:64515953-64515972 | None:intergenic | 30.0% |
!! | CCTTCATATTTGAGTTTTTG+CGG | - | chr7.3:64513349-64513368 | MS.gene30263:intron | 30.0% |
!!! | GTGCTGACAATTTTTTATCT+TGG | - | chr7.3:64516907-64516926 | MS.gene30263:CDS | 30.0% |
AAACCTAGATCTAGTCTCTT+TGG | - | chr7.3:64513646-64513665 | MS.gene30263:intron | 35.0% | |
AAAGAGACTAGATCTAGGTT+TGG | + | chr7.3:64513647-64513666 | None:intergenic | 35.0% | |
AAGAAAAAGTGAAGTCGGTT+TGG | + | chr7.3:64513206-64513225 | None:intergenic | 35.0% | |
AAGAGGTTTAGTCGTCAAAA+TGG | + | chr7.3:64513143-64513162 | None:intergenic | 35.0% | |
AGAAAACTCTTTCGTAGTCA+AGG | - | chr7.3:64513709-64513728 | MS.gene30263:intron | 35.0% | |
ATCTCTCATTGGTCAGAAAA+TGG | - | chr7.3:64516870-64516889 | MS.gene30263:intron | 35.0% | |
ATTCTCGTTGTTGATATGGT+TGG | - | chr7.3:64514910-64514929 | MS.gene30263:intron | 35.0% | |
ATTGCTCTTGTCTTCTGTTT+CGG | - | chr7.3:64516938-64516957 | MS.gene30263:CDS | 35.0% | |
ATTGTCCCTTCTACTTTCAA+TGG | - | chr7.3:64514864-64514883 | MS.gene30263:intron | 35.0% | |
CAAAATGGACAAGTCCAATT+TGG | + | chr7.3:64513128-64513147 | None:intergenic | 35.0% | |
CACTTCCTTGATCTTCTAAT+CGG | - | chr7.3:64516767-64516786 | MS.gene30263:intron | 35.0% | |
CATTAGCCATTGAAAGTAGA+AGG | + | chr7.3:64514873-64514892 | None:intergenic | 35.0% | |
CCAATCATTCATTCACGAAA+AGG | - | chr7.3:64513453-64513472 | MS.gene30263:intron | 35.0% | |
CCGCAAAAACTCAAATATGA+AGG | + | chr7.3:64513352-64513371 | None:intergenic | 35.0% | |
GAAACTACTGTTAGAGTCAA+TGG | - | chr7.3:64513944-64513963 | MS.gene30263:intron | 35.0% | |
GAATCGAAAGAGGTAAATAG+AGG | - | chr7.3:64513570-64513589 | MS.gene30263:intron | 35.0% | |
GACCCAAAGATTGTTAAGAA+TGG | + | chr7.3:64515117-64515136 | None:intergenic | 35.0% | |
GTTTGGATCACTCTTTGTAT+TGG | - | chr7.3:64515465-64515484 | MS.gene30263:intron | 35.0% | |
TAGAAAAGTCTCTAGTTGAG+CGG | + | chr7.3:64512591-64512610 | None:intergenic | 35.0% | |
TAGAACCGATTAGAAGATCA+AGG | + | chr7.3:64516775-64516794 | None:intergenic | 35.0% | |
TCAAATTCCTTTCCTTCACA+CGG | + | chr7.3:64513037-64513056 | None:intergenic | 35.0% | |
TCGTGATGAAATCTAAATGC+TGG | + | chr7.3:64512792-64512811 | None:intergenic | 35.0% | |
TCTTTCGTAGTCAAGGTTAT+GGG | - | chr7.3:64513716-64513735 | MS.gene30263:intron | 35.0% | |
TGACATTCTCGTTGTTGATA+TGG | - | chr7.3:64514906-64514925 | MS.gene30263:intron | 35.0% | |
TTACCTCTTTCGATTCTGTT+CGG | + | chr7.3:64513566-64513585 | None:intergenic | 35.0% | |
TTGTGACAACAAGTCAGAAA+TGG | + | chr7.3:64516679-64516698 | None:intergenic | 35.0% | |
! | AAATTTGTTTGTGGGGTGAA+AGG | - | chr7.3:64513911-64513930 | MS.gene30263:intron | 35.0% |
! | AGAAAAAGTGAAGTCGGTTT+GGG | + | chr7.3:64513205-64513224 | None:intergenic | 35.0% |
! | AGAGAAGTTGATCTAGAAGA+AGG | + | chr7.3:64513329-64513348 | None:intergenic | 35.0% |
! | CATCATTGACTAATAGAGCT+TGG | + | chr7.3:64514021-64514040 | None:intergenic | 35.0% |
! | CCTTTTCGTGAATGAATGAT+TGG | + | chr7.3:64513456-64513475 | None:intergenic | 35.0% |
! | GTGTGTATTGGGAAAGTTTT+CGG | - | chr7.3:64516102-64516121 | MS.gene30263:intron | 35.0% |
! | TGCATCTAGAGCTATTCATT+TGG | + | chr7.3:64515533-64515552 | None:intergenic | 35.0% |
!! | ACACGGGATTTTAAGTCATA+TGG | + | chr7.3:64513020-64513039 | None:intergenic | 35.0% |
!!! | AGTGTTGGTTTTCATAGTTC+AGG | - | chr7.3:64515148-64515167 | MS.gene30263:intron | 35.0% |
AAACCGAACAGAATCGAAAG+AGG | - | chr7.3:64513560-64513579 | MS.gene30263:intron | 40.0% | |
AAGGTTCCTTCAAAATCAGC+TGG | - | chr7.3:64512477-64512496 | MS.gene30263:intron | 40.0% | |
ACAAAATACCCCAGCAGAAA+AGG | - | chr7.3:64512827-64512846 | MS.gene30263:intron | 40.0% | |
AGGAACCTTTAGCAGAAACA+TGG | + | chr7.3:64512466-64512485 | None:intergenic | 40.0% | |
AGTTGGATCCTTGACAGATA+AGG | - | chr7.3:64512687-64512706 | MS.gene30263:CDS | 40.0% | |
ATCCTCACAATATCCATGGA+TGG | + | chr7.3:64515260-64515279 | None:intergenic | 40.0% | |
CAAATTCCTTTCCTTCACAC+GGG | + | chr7.3:64513036-64513055 | None:intergenic | 40.0% | |
CAGGAGCTAATACATGCATT+AGG | - | chr7.3:64515167-64515186 | MS.gene30263:intron | 40.0% | |
CCAAAGGATCTACATGATGA+AGG | + | chr7.3:64513249-64513268 | None:intergenic | 40.0% | |
CCATGATCCCTTAGTTTACT+AGG | + | chr7.3:64514290-64514309 | None:intergenic | 40.0% | |
CCTAGTAAACTAAGGGATCA+TGG | - | chr7.3:64514287-64514306 | MS.gene30263:intron | 40.0% | |
CCTTCATCATGTAGATCCTT+TGG | - | chr7.3:64513246-64513265 | MS.gene30263:intron | 40.0% | |
CTACCAAAGAGACTAGATCT+AGG | + | chr7.3:64513652-64513671 | None:intergenic | 40.0% | |
CTCAATAACATGAGCTTAGC+TGG | + | chr7.3:64512568-64512587 | None:intergenic | 40.0% | |
CTCTTTCGTAGTCAAGGTTA+TGG | - | chr7.3:64513715-64513734 | MS.gene30263:intron | 40.0% | |
CTGAAGTAGGTGTGGAATTT+AGG | + | chr7.3:64512869-64512888 | None:intergenic | 40.0% | |
CTGATTCAGATTCTTGTGTG+TGG | - | chr7.3:64514837-64514856 | MS.gene30263:intron | 40.0% | |
GGAGGAAGAAAAAGTGAAGT+CGG | + | chr7.3:64513211-64513230 | None:intergenic | 40.0% | |
TAAAATCCCGTGTGAAGGAA+AGG | - | chr7.3:64513027-64513046 | MS.gene30263:intron | 40.0% | |
TAAGCGATGAAATCTGCAAG+AGG | - | chr7.3:64515288-64515307 | MS.gene30263:intron | 40.0% | |
TGACTTAAAATCCCGTGTGA+AGG | - | chr7.3:64513022-64513041 | MS.gene30263:intron | 40.0% | |
TTCCTACGTGTGCAAAAAGA+TGG | - | chr7.3:64512910-64512929 | MS.gene30263:intron | 40.0% | |
! | ACGTAAAGCCTTATCTGTCA+AGG | + | chr7.3:64512698-64512717 | None:intergenic | 40.0% |
! | ATTACGTGTTCCTTTTCTGC+TGG | + | chr7.3:64512840-64512859 | None:intergenic | 40.0% |
! | CGTTAATGTTTTACAGGCAC+TGG | - | chr7.3:64515203-64515222 | MS.gene30263:intron | 40.0% |
! | CTACATGATGAAGGCTAGTT+TGG | + | chr7.3:64513240-64513259 | None:intergenic | 40.0% |
! | GAATTCTGAGAACCTTACCA+GGG | + | chr7.3:64512504-64512523 | None:intergenic | 40.0% |
! | GATCACTCTTTGTATTGGCA+TGG | - | chr7.3:64515470-64515489 | MS.gene30263:intron | 40.0% |
! | TACTTTTGATCGTGAATCGG+AGG | - | chr7.3:64515601-64515620 | MS.gene30263:intron | 40.0% |
! | TGAATTCTGAGAACCTTACC+AGG | + | chr7.3:64512505-64512524 | None:intergenic | 40.0% |
! | TTACGTGTTCCTTTTCTGCT+GGG | + | chr7.3:64512839-64512858 | None:intergenic | 40.0% |
! | TTCCATCTTTTTGCACACGT+AGG | + | chr7.3:64512915-64512934 | None:intergenic | 40.0% |
! | TTGAGTTTTTGCGGTTTCGT+CGG | - | chr7.3:64513358-64513377 | MS.gene30263:intron | 40.0% |
!! | GAAAAAGTGAAGTCGGTTTG+GGG | + | chr7.3:64513204-64513223 | None:intergenic | 40.0% |
!! | GGTCTAGTGATTGATAGTGT+TGG | - | chr7.3:64515133-64515152 | MS.gene30263:intron | 40.0% |
!! | TAAGGTAGATTTTTGGGGAG+TGG | + | chr7.3:64512405-64512424 | None:intergenic | 40.0% |
!! | TGAAGGCTAGTTTGGATTTG+AGG | + | chr7.3:64513232-64513251 | None:intergenic | 40.0% |
!! | TTCTGCTGGGGTATTTTGTA+AGG | + | chr7.3:64512826-64512845 | None:intergenic | 40.0% |
!! | TTTTGGGGAGTGGTATTGTT+AGG | + | chr7.3:64512395-64512414 | None:intergenic | 40.0% |
!!! | GGTTTTTTGCTGTTGATAGC+AGG | - | chr7.3:64516971-64516990 | MS.gene30263:CDS | 40.0% |
AAGCAAGGTTAGCAGCACTT+TGG | - | chr7.3:64512647-64512666 | MS.gene30263:CDS | 45.0% | |
AATAACCCGTCACACAAGCA+AGG | - | chr7.3:64512632-64512651 | MS.gene30263:intron | 45.0% | |
AATGTGTGCATCAGTCAGCA+TGG | - | chr7.3:64516842-64516861 | MS.gene30263:intron | 45.0% | |
ACTCGTACGATTCTACGAGT+TGG | - | chr7.3:64516396-64516415 | MS.gene30263:intron | 45.0% | |
CACCATCCATGGATATTGTG+AGG | - | chr7.3:64515255-64515274 | MS.gene30263:intron | 45.0% | |
CATCATGTAGATCCTTTGGC+TGG | - | chr7.3:64513250-64513269 | MS.gene30263:intron | 45.0% | |
CGATTCGTGAGGAAGAAGAA+CGG | - | chr7.3:64513512-64513531 | MS.gene30263:intron | 45.0% | |
CGATTCTGTCTACCATGATC+GGG | - | chr7.3:64516423-64516442 | MS.gene30263:intron | 45.0% | |
CGTTCTTCTTCCTCACGAAT+CGG | + | chr7.3:64513514-64513533 | None:intergenic | 45.0% | |
CTCCCATCAGATTACGATTC+CGG | - | chr7.3:64516336-64516355 | MS.gene30263:intron | 45.0% | |
CTCGTTGTTGATATGGTTGG+TGG | - | chr7.3:64514913-64514932 | MS.gene30263:intron | 45.0% | |
GAATCGTAATCTGATGGGAG+CGG | + | chr7.3:64516336-64516355 | None:intergenic | 45.0% | |
GATCCAACTCCAAAAAACCC+TGG | + | chr7.3:64512676-64512695 | None:intergenic | 45.0% | |
GCATGGAGGAAATCTCTCAT+TGG | - | chr7.3:64516859-64516878 | MS.gene30263:intron | 45.0% | |
GCGATTCTGTCTACCATGAT+CGG | - | chr7.3:64516422-64516441 | MS.gene30263:intron | 45.0% | |
GGTTGTTTGTAGAGAGAAGG+AGG | + | chr7.3:64513183-64513202 | None:intergenic | 45.0% | |
GTGCGCCTTCTTCAAAATTC+CGG | + | chr7.3:64516248-64516267 | None:intergenic | 45.0% | |
GTTGTCATCGTGGCGTTTAA+TGG | + | chr7.3:64513760-64513779 | None:intergenic | 45.0% | |
TCTCTTGCTCCTGCTTGATT+CGG | + | chr7.3:64513421-64513440 | None:intergenic | 45.0% | |
TCTTAGACATGCACCATCCA+TGG | - | chr7.3:64515244-64515263 | MS.gene30263:intron | 45.0% | |
TCTTCAAAATTCCGGGTTCG+CGG | + | chr7.3:64516240-64516259 | None:intergenic | 45.0% | |
TGAATCGGAGGATCGTAACA+CGG | - | chr7.3:64515613-64515632 | MS.gene30263:intron | 45.0% | |
TGCGCCTTCTTCAAAATTCC+GGG | + | chr7.3:64516247-64516266 | None:intergenic | 45.0% | |
TGCTAACCTTGCTTGTGTGA+CGG | + | chr7.3:64512641-64512660 | None:intergenic | 45.0% | |
TGGGGTTGTTTGTAGAGAGA+AGG | + | chr7.3:64513186-64513205 | None:intergenic | 45.0% | |
TGGTTTATGAGAAAACGCCG+TGG | - | chr7.3:64513964-64513983 | MS.gene30263:intron | 45.0% | |
! | ACACTGCCGTCATCATGTTT+TGG | + | chr7.3:64516723-64516742 | None:intergenic | 45.0% |
! | TACGTGTTCCTTTTCTGCTG+GGG | + | chr7.3:64512838-64512857 | None:intergenic | 45.0% |
!! | AAAACATGATGACGGCAGTG+TGG | - | chr7.3:64516722-64516741 | MS.gene30263:intron | 45.0% |
!! | AGGCTAGTTTGGATTTGAGG+AGG | + | chr7.3:64513229-64513248 | None:intergenic | 45.0% |
!! | CGAACCCGGAATTTTGAAGA+AGG | - | chr7.3:64516240-64516259 | MS.gene30263:intron | 45.0% |
!! | CGATAAGAGGTGTCTGAAGT+AGG | + | chr7.3:64512882-64512901 | None:intergenic | 45.0% |
!! | CTGGGGTATTTTGTAAGGCT+TGG | + | chr7.3:64512821-64512840 | None:intergenic | 45.0% |
!! | GCTTGTGTGACGGGTTATTA+TGG | + | chr7.3:64512631-64512650 | None:intergenic | 45.0% |
!! | GCTTTCTGTGTGTTGGTTTC+TGG | - | chr7.3:64513393-64513412 | MS.gene30263:intron | 45.0% |
!! | TTTCTGGAACCGAATCAAGC+AGG | - | chr7.3:64513409-64513428 | MS.gene30263:intron | 45.0% |
!!! | CTTTGGTTGCCAGGGTTTTT+TGG | - | chr7.3:64512664-64512683 | MS.gene30263:CDS | 45.0% |
!!! | TTGCCAGGGTTTTTTGGAGT+TGG | - | chr7.3:64512670-64512689 | MS.gene30263:CDS | 45.0% |
!! | TTAAAAATAAATTATATAAG+TGG | - | chr7.3:64515771-64515790 | MS.gene30263:intron | 5.0% |
!!! | AATATAAAATTGTTTTTAAA+TGG | + | chr7.3:64513087-64513106 | None:intergenic | 5.0% |
!!! | ATATAAAATTGTTTTTAAAT+GGG | + | chr7.3:64513086-64513105 | None:intergenic | 5.0% |
AAATCAGCTGGTCCCTGGTA+AGG | - | chr7.3:64512489-64512508 | MS.gene30263:CDS | 50.0% | |
AAGGACGACGAGAAGAACGA+GGG | + | chr7.3:64513310-64513329 | None:intergenic | 50.0% | |
ACACATGGCTATCCCGATCA+TGG | + | chr7.3:64516438-64516457 | None:intergenic | 50.0% | |
AGCGGTGGAATCGAGTGTTT+CGG | + | chr7.3:64516287-64516306 | None:intergenic | 50.0% | |
ATGGCGAGGAGATGATCTGT+TGG | + | chr7.3:64512447-64512466 | None:intergenic | 50.0% | |
CATGTAGATCCTTTGGCTGG+TGG | - | chr7.3:64513253-64513272 | MS.gene30263:intron | 50.0% | |
CCATCAGATTACGATTCCGG+CGG | - | chr7.3:64516339-64516358 | MS.gene30263:intron | 50.0% | |
CCTTTAGCAGAAACATGGCG+AGG | + | chr7.3:64512461-64512480 | None:intergenic | 50.0% | |
CGCCGGAATCGTAATCTGAT+GGG | + | chr7.3:64516341-64516360 | None:intergenic | 50.0% | |
CTTCAAAATCAGCTGGTCCC+TGG | - | chr7.3:64512484-64512503 | MS.gene30263:intron | 50.0% | |
CTTCAAAATTCCGGGTTCGC+GGG | + | chr7.3:64516239-64516258 | None:intergenic | 50.0% | |
CTTCTTCCTCACGAATCGGT+CGG | + | chr7.3:64513510-64513529 | None:intergenic | 50.0% | |
GAATCAAGCAGGAGCAAGAG+AGG | - | chr7.3:64513420-64513439 | MS.gene30263:intron | 50.0% | |
GCTAACCTTGCTTGTGTGAC+GGG | + | chr7.3:64512640-64512659 | None:intergenic | 50.0% | |
GTGCGAAGTAGAGTTCACCA+CGG | + | chr7.3:64513984-64514003 | None:intergenic | 50.0% | |
GTTTCGTCGGATCTTGGGTT+TGG | - | chr7.3:64513371-64513390 | MS.gene30263:intron | 50.0% | |
TAGCAGCACTTTGGTTGCCA+GGG | - | chr7.3:64512656-64512675 | MS.gene30263:CDS | 50.0% | |
TAGGTTCTTCTCCGAACCAC+CGG | - | chr7.3:64513281-64513300 | MS.gene30263:intron | 50.0% | |
TTAGCAGCACTTTGGTTGCC+AGG | - | chr7.3:64512655-64512674 | MS.gene30263:CDS | 50.0% | |
TTCTGTTTCGGTCTGCTGTG+TGG | - | chr7.3:64516950-64516969 | MS.gene30263:CDS | 50.0% | |
TTCTTCCTCACGAATCGGTC+GGG | + | chr7.3:64513509-64513528 | None:intergenic | 50.0% | |
TTGCCACTGCACCAGTAAGA+AGG | + | chr7.3:64514939-64514958 | None:intergenic | 50.0% | |
TTGCGGTTTCGTCGGATCTT+GGG | - | chr7.3:64513366-64513385 | MS.gene30263:intron | 50.0% | |
TTTGCGGTTTCGTCGGATCT+TGG | - | chr7.3:64513365-64513384 | MS.gene30263:intron | 50.0% | |
! | CCTCGCCATGTTTCTGCTAA+AGG | - | chr7.3:64512458-64512477 | MS.gene30263:intron | 50.0% |
!! | AGAGGTGTCTGAAGTAGGTG+TGG | + | chr7.3:64512877-64512896 | None:intergenic | 50.0% |
!! | ATGGTTGGTGGCCTTCTTAC+TGG | - | chr7.3:64514925-64514944 | MS.gene30263:intron | 50.0% |
!! | CAGGGACCAGCTGATTTTGA+AGG | + | chr7.3:64512486-64512505 | None:intergenic | 50.0% |
!! | GGGTTTGGCTTTCTGTGTGT+TGG | - | chr7.3:64513386-64513405 | MS.gene30263:intron | 50.0% |
AAAATTCCGGGTTCGCGGGT+CGG | + | chr7.3:64516235-64516254 | None:intergenic | 55.0% | |
ACGCCACGATGACAACACTG+CGG | - | chr7.3:64513764-64513783 | MS.gene30263:intron | 55.0% | |
AGCAGGAGCAAGAGAGGAAG+TGG | - | chr7.3:64513426-64513445 | MS.gene30263:intron | 55.0% | |
AGGACGACGAGAAGAACGAG+GGG | + | chr7.3:64513309-64513328 | None:intergenic | 55.0% | |
CAACCGCAGTGTTGTCATCG+TGG | + | chr7.3:64513770-64513789 | None:intergenic | 55.0% | |
CCGCCGGAATCGTAATCTGA+TGG | + | chr7.3:64516342-64516361 | None:intergenic | 55.0% | |
GAAGGACGACGAGAAGAACG+AGG | + | chr7.3:64513311-64513330 | None:intergenic | 55.0% | |
GTGTGCATCAGTCAGCATGG+AGG | - | chr7.3:64516845-64516864 | MS.gene30263:intron | 55.0% | |
TGGCCTTCTTACTGGTGCAG+TGG | - | chr7.3:64514933-64514952 | MS.gene30263:intron | 55.0% | |
! | ACCGCTTCCACGCATTTTCG+CGG | - | chr7.3:64516301-64516320 | MS.gene30263:intron | 55.0% |
! | ACGCATTTTCGCGGCGATTC+CGG | - | chr7.3:64516310-64516329 | MS.gene30263:intron | 55.0% |
! | GCAGTGGCAAAGCGTTTAGG+AGG | - | chr7.3:64514949-64514968 | MS.gene30263:intron | 55.0% |
! | GGTGCAGTGGCAAAGCGTTT+AGG | - | chr7.3:64514946-64514965 | MS.gene30263:intron | 55.0% |
! | GTGTTTCGGCCGATTCTGTG+CGG | + | chr7.3:64516273-64516292 | None:intergenic | 55.0% |
!! | TAGATCCCGACCGATTCGTG+AGG | - | chr7.3:64513501-64513520 | MS.gene30263:intron | 55.0% |
AAATTCCGGGTTCGCGGGTC+GGG | + | chr7.3:64516234-64516253 | None:intergenic | 60.0% | |
CCTATCGCACCACCAGCCAA+AGG | + | chr7.3:64513265-64513284 | None:intergenic | 60.0% | |
CGTAATCTGATGGGAGCGGC+CGG | + | chr7.3:64516332-64516351 | None:intergenic | 60.0% | |
GCCGCGAAAATGCGTGGAAG+CGG | + | chr7.3:64516305-64516324 | None:intergenic | 60.0% | |
GCGAAAATGCGTGGAAGCGG+TGG | + | chr7.3:64516302-64516321 | None:intergenic | 60.0% | |
GGAATCGCCGCGAAAATGCG+TGG | + | chr7.3:64516311-64516330 | None:intergenic | 60.0% | |
TTACGATTCCGGCGGCGTTC+CGG | - | chr7.3:64516347-64516366 | MS.gene30263:intron | 60.0% | |
! | CCTTTGGCTGGTGGTGCGAT+AGG | - | chr7.3:64513262-64513281 | MS.gene30263:intron | 60.0% |
GGCGCACAGCCGCACAGAAT+CGG | - | chr7.3:64516261-64516280 | MS.gene30263:intron | 65.0% | |
! | ACGAGAAGAACGAGGGGCGC+CGG | + | chr7.3:64513303-64513322 | None:intergenic | 65.0% |
ATTCCGGCGGCGTTCCGGCA+CGG | - | chr7.3:64516352-64516371 | MS.gene30263:intron | 70.0% | |
!! | AACGAGGGGCGCCGGTGGTT+CGG | + | chr7.3:64513295-64513314 | None:intergenic | 70.0% |
!! | AGAAGAACGAGGGGCGCCGG+TGG | + | chr7.3:64513300-64513319 | None:intergenic | 70.0% |
CGCGGGTCGGGTTCGCAACC+CGG | + | chr7.3:64516222-64516241 | None:intergenic | 75.0% | |
GCGAACCCGACCCGCGAACC+CGG | - | chr7.3:64516226-64516245 | MS.gene30263:intron | 75.0% | |
! | CCACCGTGCCGGAACGCCGC+CGG | + | chr7.3:64516358-64516377 | None:intergenic | 80.0% |
! | CGGCGGCGTTCCGGCACGGT+GGG | - | chr7.3:64516356-64516375 | MS.gene30263:intron | 80.0% |
! | CGGCGTTCCGGCACGGTGGG+GGG | - | chr7.3:64516359-64516378 | MS.gene30263:intron | 80.0% |
! | GCGGCGTTCCGGCACGGTGG+GGG | - | chr7.3:64516358-64516377 | MS.gene30263:intron | 80.0% |
! | GGCGGCGTTCCGGCACGGTG+GGG | - | chr7.3:64516357-64516376 | MS.gene30263:intron | 80.0% |
! | CCGGCGGCGTTCCGGCACGG+TGG | - | chr7.3:64516355-64516374 | MS.gene30263:intron | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 64512383 | 64517012 | 64512383 | ID=MS.gene30263 |
chr7.3 | mRNA | 64512383 | 64517012 | 64512383 | ID=MS.gene30263.t1;Parent=MS.gene30263 |
chr7.3 | exon | 64516890 | 64517012 | 64516890 | ID=MS.gene30263.t1.exon1;Parent=MS.gene30263.t1 |
chr7.3 | CDS | 64516890 | 64517012 | 64516890 | ID=cds.MS.gene30263.t1;Parent=MS.gene30263.t1 |
chr7.3 | exon | 64515814 | 64516058 | 64515814 | ID=MS.gene30263.t1.exon2;Parent=MS.gene30263.t1 |
chr7.3 | CDS | 64515814 | 64516058 | 64515814 | ID=cds.MS.gene30263.t1;Parent=MS.gene30263.t1 |
chr7.3 | exon | 64514425 | 64514549 | 64514425 | ID=MS.gene30263.t1.exon3;Parent=MS.gene30263.t1 |
chr7.3 | CDS | 64514425 | 64514549 | 64514425 | ID=cds.MS.gene30263.t1;Parent=MS.gene30263.t1 |
chr7.3 | exon | 64514086 | 64514176 | 64514086 | ID=MS.gene30263.t1.exon4;Parent=MS.gene30263.t1 |
chr7.3 | CDS | 64514086 | 64514176 | 64514086 | ID=cds.MS.gene30263.t1;Parent=MS.gene30263.t1 |
chr7.3 | exon | 64512637 | 64512733 | 64512637 | ID=MS.gene30263.t1.exon5;Parent=MS.gene30263.t1 |
chr7.3 | CDS | 64512637 | 64512733 | 64512637 | ID=cds.MS.gene30263.t1;Parent=MS.gene30263.t1 |
chr7.3 | exon | 64512489 | 64512558 | 64512489 | ID=MS.gene30263.t1.exon6;Parent=MS.gene30263.t1 |
chr7.3 | CDS | 64512489 | 64512558 | 64512489 | ID=cds.MS.gene30263.t1;Parent=MS.gene30263.t1 |
chr7.3 | exon | 64512383 | 64512402 | 64512383 | ID=MS.gene30263.t1.exon7;Parent=MS.gene30263.t1 |
chr7.3 | CDS | 64512383 | 64512402 | 64512383 | ID=cds.MS.gene30263.t1;Parent=MS.gene30263.t1 |
Gene Sequence |
Protein sequence |