Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30284.t1 | XP_013442714.1 | 94.7 | 398 | 21 | 0 | 1 | 398 | 1 | 398 | 1.00E-214 | 755.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30284.t1 | Q6GMB0 | 31.6 | 370 | 223 | 9 | 37 | 398 | 39 | 386 | 2.5e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30284.t1 | A0A072TGP8 | 94.7 | 398 | 21 | 0 | 1 | 398 | 1 | 398 | 7.5e-215 | 755.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30284 | MS.gene26246 | PPI |
| MS.gene30284 | MS.gene05127 | PPI |
| MS.gene30284 | MS.gene98045 | PPI |
| MS.gene30284 | MS.gene009653 | PPI |
| MS.gene30284 | MS.gene53889 | PPI |
| MS.gene30284 | MS.gene049594 | PPI |
| MS.gene30284 | MS.gene017247 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30284.t1 | MTR_0103s0100 | 96.734 | 398 | 13 | 0 | 1 | 398 | 1 | 398 | 0.0 | 794 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30284.t1 | AT2G44580 | 55.949 | 395 | 155 | 4 | 10 | 398 | 5 | 386 | 9.06e-158 | 449 |
| MS.gene30284.t1 | AT2G44580 | 55.949 | 395 | 155 | 4 | 10 | 398 | 5 | 386 | 9.06e-158 | 449 |
Find 80 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCTCTTACCTCCTTTC+AGG | 0.140263 | 7.4:+66182568 | None:intergenic |
| GTTGCATATCACCCTGATTT+TGG | 0.178187 | 7.4:-66185321 | MS.gene30284:CDS |
| TACTATCTTGCACTGAAAAT+TGG | 0.229137 | 7.4:+66182153 | None:intergenic |
| CCTGAAGTCTGCTGTGGTTC+TGG | 0.271122 | 7.4:+66185390 | None:intergenic |
| CAATTTAAGTTTATCAAGTC+TGG | 0.284052 | 7.4:+66183025 | None:intergenic |
| TACGATTCTGATTGATTTGC+TGG | 0.300346 | 7.4:+66183149 | None:intergenic |
| TACCTTTCATTCAAAACATC+TGG | 0.312568 | 7.4:+66185252 | None:intergenic |
| GGAGTTAAGGGTTGGATTGC+AGG | 0.317393 | 7.4:-66182877 | MS.gene30284:CDS |
| CTAGATCAGGATTATATAAC+TGG | 0.322642 | 7.4:-66182935 | MS.gene30284:CDS |
| ATAATATCTGAACCTGATAT+AGG | 0.331471 | 7.4:+66182335 | None:intergenic |
| GAGTTACATGGACATGATTC+TGG | 0.333299 | 7.4:-66182808 | MS.gene30284:CDS |
| TCATCATGAGGTCCAAAATC+AGG | 0.344472 | 7.4:+66185309 | None:intergenic |
| TCTAGAGCTGGATGAGAAAT+TGG | 0.347964 | 7.4:-66185277 | MS.gene30284:CDS |
| AAAAGTTGTACCTGGTAGTA+TGG | 0.354433 | 7.4:-66183066 | MS.gene30284:CDS |
| CAATGCCTTGCAAGTACCTT+TGG | 0.365770 | 7.4:+66182693 | None:intergenic |
| ACATATGCTATGAAGTTTGT+TGG | 0.371449 | 7.4:-66183200 | MS.gene30284:CDS |
| AGCTAGTGACGAGGAGTTAA+GGG | 0.384193 | 7.4:-66182889 | MS.gene30284:CDS |
| GAGGTATTGACAGAGAAAAT+TGG | 0.391418 | 7.4:-66182471 | MS.gene30284:CDS |
| CCAGAACCACAGCAGACTTC+AGG | 0.399798 | 7.4:-66185390 | MS.gene30284:CDS |
| AAGATCTACAGCCCTATATC+AGG | 0.405081 | 7.4:-66182347 | MS.gene30284:intron |
| AAGCTAGTGACGAGGAGTTA+AGG | 0.405465 | 7.4:-66182890 | MS.gene30284:CDS |
| TATTTCAGGATGGTCTTAAG+AGG | 0.410120 | 7.4:-66183263 | MS.gene30284:intron |
| TTTCAGAGAGCGTGCAAAAT+GGG | 0.425167 | 7.4:-66182376 | MS.gene30284:CDS |
| CTGTGGAGATCAATGGATAT+TGG | 0.428629 | 7.4:-66182845 | MS.gene30284:CDS |
| TGCACGCTCTCTGAAAAGAA+TGG | 0.432893 | 7.4:+66182383 | None:intergenic |
| TAATATCTGAACCTGATATA+GGG | 0.441929 | 7.4:+66182336 | None:intergenic |
| TGGTACAAGCAAAACAGAAT+TGG | 0.457146 | 7.4:+66183172 | None:intergenic |
| AAAGTGGGATGCATTTCATC+TGG | 0.459477 | 7.4:+66182510 | None:intergenic |
| CAAAGAACTGCATCTTCGTC+AGG | 0.467011 | 7.4:+66183236 | None:intergenic |
| CTTTCAGCTGTGGAGATCAA+TGG | 0.471420 | 7.4:-66182852 | MS.gene30284:CDS |
| TGGTAGTATGGAGCTTATTG+AGG | 0.485548 | 7.4:-66183054 | MS.gene30284:CDS |
| AGAATGGAGAAGCGTTCAGC+TGG | 0.490161 | 7.4:+66182399 | None:intergenic |
| AATTTAAGTTTATCAAGTCT+GGG | 0.490225 | 7.4:+66183026 | None:intergenic |
| AAAATTCAGTGTTGAATGAC+TGG | 0.512521 | 7.4:-66182773 | MS.gene30284:CDS |
| AGAAAATTGGAGTTGAGACA+TGG | 0.514429 | 7.4:-66182458 | MS.gene30284:CDS |
| GAGAATCACGAATCTAGATC+AGG | 0.514548 | 7.4:-66182948 | MS.gene30284:CDS |
| ACCTTCCATAAGATCAAAAG+TGG | 0.518379 | 7.4:+66182494 | None:intergenic |
| ATTGCAGGCTCTTTCAGCTG+TGG | 0.518858 | 7.4:-66182862 | MS.gene30284:CDS |
| GCAAAGTGGTGTGTGGAAGT+TGG | 0.529433 | 7.4:-66182628 | MS.gene30284:CDS |
| GTACCAGGTCTTTCTGCAGA+AGG | 0.532732 | 7.4:-66182225 | MS.gene30284:CDS |
| GTGGAAGTTGGATGAGAAGC+GGG | 0.536854 | 7.4:-66182616 | MS.gene30284:CDS |
| AAGCGTTCAGCTGGAGTGGA+AGG | 0.542810 | 7.4:+66182408 | None:intergenic |
| AGATGAAGTTGTGAATATGC+TGG | 0.542969 | 7.4:-66182730 | MS.gene30284:CDS |
| GGAGAAGCGTTCAGCTGGAG+TGG | 0.543503 | 7.4:+66182404 | None:intergenic |
| TGATCTCATAATTCTAGAGC+TGG | 0.546425 | 7.4:-66185289 | MS.gene30284:CDS |
| GCAACAGAAATCGATGATCC+TGG | 0.555146 | 7.4:+66185339 | None:intergenic |
| AGTGACGAGGAGTTAAGGGT+TGG | 0.559394 | 7.4:-66182885 | MS.gene30284:CDS |
| CAGATTTGATGAGAATGACA+TGG | 0.560594 | 7.4:-66182982 | MS.gene30284:CDS |
| ACCTTTCATTCAAAACATCT+GGG | 0.562619 | 7.4:+66185253 | None:intergenic |
| CATCATGAGGTCCAAAATCA+GGG | 0.563023 | 7.4:+66185310 | None:intergenic |
| GAGAGCGTGCAAAATGGGAA+TGG | 0.564104 | 7.4:-66182371 | MS.gene30284:CDS |
| ATTAGTTGATGAGAGTTACA+TGG | 0.564361 | 7.4:-66182820 | MS.gene30284:CDS |
| TTCAGGGATCTGGATGTACC+AGG | 0.570204 | 7.4:-66182240 | MS.gene30284:intron |
| ATTTAAGTTTATCAAGTCTG+GGG | 0.591494 | 7.4:+66183027 | None:intergenic |
| GATTTCCAAAGGTACTTGCA+AGG | 0.595602 | 7.4:-66182698 | MS.gene30284:CDS |
| TTTAAGTTTATCAAGTCTGG+GGG | 0.597237 | 7.4:+66183028 | None:intergenic |
| GTGAATATGCTGGAATCAGA+TGG | 0.612073 | 7.4:-66182720 | MS.gene30284:CDS |
| ATTGGATCATCATTAGCCGA+TGG | 0.613418 | 7.4:+66182171 | None:intergenic |
| AAACCTTCTGCAGAAAGACC+TGG | 0.615596 | 7.4:+66182222 | None:intergenic |
| TGGAAGGCAATGACGAGACA+CGG | 0.621677 | 7.4:+66182424 | None:intergenic |
| GCTCCTCCTGAAGTCTGCTG+TGG | 0.628242 | 7.4:+66185384 | None:intergenic |
| GAAAATTGGAGTTGAGACAT+GGG | 0.629514 | 7.4:-66182457 | MS.gene30284:CDS |
| CACTCGAAAGACACAACCAT+CGG | 0.633978 | 7.4:-66182187 | MS.gene30284:CDS |
| TCAATAAGCTCCATACTACC+AGG | 0.636229 | 7.4:+66183056 | None:intergenic |
| TATGCTAGAGAAATCCTGAA+AGG | 0.639851 | 7.4:-66182582 | MS.gene30284:CDS |
| AGTGTACTAAAAGTTGTACC+TGG | 0.641842 | 7.4:-66183074 | MS.gene30284:CDS |
| GCTAGAGAAATCCTGAAAGG+AGG | 0.643390 | 7.4:-66182579 | MS.gene30284:CDS |
| TGTGGAAGTTGGATGAGAAG+CGG | 0.646023 | 7.4:-66182617 | MS.gene30284:CDS |
| GAACCACAGCAGACTTCAGG+AGG | 0.646781 | 7.4:-66185387 | MS.gene30284:CDS |
| GGAATCAGATGGATTTCCAA+AGG | 0.647832 | 7.4:-66182709 | MS.gene30284:CDS |
| ACACTTAGACATATGTCACC+AGG | 0.648575 | 7.4:-66185357 | MS.gene30284:CDS |
| GATTCTGATTGATTTGCTGG+TGG | 0.656551 | 7.4:+66183152 | None:intergenic |
| ACAGCAGACTTCAGGAGGAG+CGG | 0.657032 | 7.4:-66185382 | MS.gene30284:CDS |
| AGGCAATGACGAGACACGGA+AGG | 0.658195 | 7.4:+66182428 | None:intergenic |
| ATTGCATGCAAAGTGGTGTG+TGG | 0.666073 | 7.4:-66182635 | MS.gene30284:CDS |
| CCTTCCATAAGATCAAAAGT+GGG | 0.666519 | 7.4:+66182495 | None:intergenic |
| GAAAATGATTGCATGCAAAG+TGG | 0.671448 | 7.4:-66182642 | MS.gene30284:CDS |
| TTGCTTGCATGTGTATGCCA+AGG | 0.692578 | 7.4:-66182673 | MS.gene30284:CDS |
| AGAATTATGAGATCATCATG+AGG | 0.708784 | 7.4:+66185297 | None:intergenic |
| AAATATTCAAGCTAGTGACG+AGG | 0.720450 | 7.4:-66182898 | MS.gene30284:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATGACCATAATATT+AGG | - | chr7.4:66184141-66184160 | MS.gene30284:intron | 15.0% |
| !! | AAAATCCATCTCAATTTATT+TGG | - | chr7.4:66182664-66182683 | MS.gene30284:CDS | 20.0% |
| !! | AAAATTATAGTACCCAAAAA+TGG | - | chr7.4:66182832-66182851 | MS.gene30284:CDS | 20.0% |
| !! | AATAGCATTATGATTTCTTA+TGG | + | chr7.4:66183217-66183236 | None:intergenic | 20.0% |
| !! | ATTAGACATATCAAAAGAAA+CGG | + | chr7.4:66183185-66183204 | None:intergenic | 20.0% |
| !! | TAACTGAAATCCTAATATTA+TGG | + | chr7.4:66184154-66184173 | None:intergenic | 20.0% |
| !! | TCGAAAAAACAATATAAAGA+TGG | + | chr7.4:66182487-66182506 | None:intergenic | 20.0% |
| !! | TCTAAGTAACTATTGTAATT+AGG | + | chr7.4:66184178-66184197 | None:intergenic | 20.0% |
| !!! | AATTTAAGTTTATCAAGTCT+GGG | + | chr7.4:66184528-66184547 | None:intergenic | 20.0% |
| !!! | ATGAGTTTTTGACTTATTTA+AGG | - | chr7.4:66182530-66182549 | MS.gene30284:CDS | 20.0% |
| !!! | TTCTAATTTTGAATGTTTCA+GGG | - | chr7.4:66185295-66185314 | MS.gene30284:CDS | 20.0% |
| !!! | TTTCTAATTTTGAATGTTTC+AGG | - | chr7.4:66185294-66185313 | MS.gene30284:CDS | 20.0% |
| !!! | TTTGGGTACTATAATTTTAT+TGG | + | chr7.4:66182830-66182849 | None:intergenic | 20.0% |
| ! | AACAACCAAATAAATTGAGA+TGG | + | chr7.4:66182672-66182691 | None:intergenic | 25.0% |
| ! | ACATGAAAATGTGTAGAAAA+GGG | + | chr7.4:66183580-66183599 | None:intergenic | 25.0% |
| ! | AGAAATCATAATGCTATTCT+TGG | - | chr7.4:66183219-66183238 | MS.gene30284:CDS | 25.0% |
| ! | ATAATATCTGAACCTGATAT+AGG | + | chr7.4:66185219-66185238 | None:intergenic | 25.0% |
| ! | CTTTAATTACTGTAATTACG+TGG | - | chr7.4:66182445-66182464 | MS.gene30284:CDS | 25.0% |
| ! | GAACACATAAATAGTAAGAA+AGG | + | chr7.4:66184038-66184057 | None:intergenic | 25.0% |
| ! | TAATATCTGAACCTGATATA+GGG | + | chr7.4:66185218-66185237 | None:intergenic | 25.0% |
| !! | AACTTTTCAATATAACCTAG+GGG | + | chr7.4:66183544-66183563 | None:intergenic | 25.0% |
| !! | AGTATTGTGATTCAGTATTT+TGG | + | chr7.4:66183442-66183461 | None:intergenic | 25.0% |
| !! | ATCATTTTCTTTTACTTCCT+TGG | + | chr7.4:66184898-66184917 | None:intergenic | 25.0% |
| !! | ATTTAAGTTTATCAAGTCTG+GGG | + | chr7.4:66184527-66184546 | None:intergenic | 25.0% |
| !! | CAACTTTTCAATATAACCTA+GGG | + | chr7.4:66183545-66183564 | None:intergenic | 25.0% |
| !! | CAATTTAAGTTTATCAAGTC+TGG | + | chr7.4:66184529-66184548 | None:intergenic | 25.0% |
| !! | GAGAAAGTTAGAGAATTTTA+TGG | - | chr7.4:66184998-66185017 | MS.gene30284:intron | 25.0% |
| !! | GAGACATTTTTATATCGAAA+AGG | + | chr7.4:66183094-66183113 | None:intergenic | 25.0% |
| !! | TAGAGAATTTTATGGAAGAA+TGG | - | chr7.4:66185006-66185025 | MS.gene30284:intron | 25.0% |
| !!! | ATTTGATTTTATGAAGCTAG+TGG | - | chr7.4:66182595-66182614 | MS.gene30284:CDS | 25.0% |
| !!! | CATATTTTAACAGAAGATCT+TGG | + | chr7.4:66183282-66183301 | None:intergenic | 25.0% |
| !!! | CGTAATTTTAATTTGACTCT+TGG | - | chr7.4:66183769-66183788 | MS.gene30284:intron | 25.0% |
| !!! | GCTTTTTGGATATTTTAAAG+TGG | + | chr7.4:66182888-66182907 | None:intergenic | 25.0% |
| !!! | TCATTTCCTTCATTTTTTCA+AGG | + | chr7.4:66182356-66182375 | None:intergenic | 25.0% |
| ACATATGCTATGAAGTTTGT+TGG | - | chr7.4:66184351-66184370 | MS.gene30284:intron | 30.0% | |
| ACATGGTTTCTTTCTATTTC+AGG | - | chr7.4:66184274-66184293 | MS.gene30284:intron | 30.0% | |
| ACCTTTCATTCAAAACATCT+GGG | + | chr7.4:66182301-66182320 | None:intergenic | 30.0% | |
| AGAAATGTAGAACACAGAAA+TGG | + | chr7.4:66183998-66184017 | None:intergenic | 30.0% | |
| AGAATTATGAGATCATCATG+AGG | + | chr7.4:66182257-66182276 | None:intergenic | 30.0% | |
| ATAAGTAAGGAAAGAGAGAA+AGG | + | chr7.4:66184251-66184270 | None:intergenic | 30.0% | |
| ATTGCTGAATTAAACCATTG+AGG | + | chr7.4:66182712-66182731 | None:intergenic | 30.0% | |
| CCTAGGTTATATTGAAAAGT+TGG | - | chr7.4:66183543-66183562 | MS.gene30284:intron | 30.0% | |
| CTAGATCAGGATTATATAAC+TGG | - | chr7.4:66184616-66184635 | MS.gene30284:intron | 30.0% | |
| CTCAAGGATAGTTATGAAAT+TGG | - | chr7.4:66183000-66183019 | MS.gene30284:CDS | 30.0% | |
| CTTATTTAAGGAGCTTTCAA+TGG | - | chr7.4:66182542-66182561 | MS.gene30284:CDS | 30.0% | |
| CTTTCCTTACTTATGTTACA+TGG | - | chr7.4:66184257-66184276 | MS.gene30284:intron | 30.0% | |
| GAAACCATGTAACATAAGTA+AGG | + | chr7.4:66184264-66184283 | None:intergenic | 30.0% | |
| GACATGAAAATGTGTAGAAA+AGG | + | chr7.4:66183581-66183600 | None:intergenic | 30.0% | |
| GGATTTCAAACATTGAAAAG+AGG | + | chr7.4:66183930-66183949 | None:intergenic | 30.0% | |
| GTAACTCCTTGAAAAAATGA+AGG | - | chr7.4:66182347-66182366 | MS.gene30284:intron | 30.0% | |
| TACCTTTCATTCAAAACATC+TGG | + | chr7.4:66182302-66182321 | None:intergenic | 30.0% | |
| TGAATTAAACCATTGAGGTT+TGG | + | chr7.4:66182707-66182726 | None:intergenic | 30.0% | |
| TTGTCAAGATTCAATTAGTG+TGG | + | chr7.4:66183030-66183049 | None:intergenic | 30.0% | |
| ! | AAAATTCAGTGTTGAATGAC+TGG | - | chr7.4:66184778-66184797 | MS.gene30284:intron | 30.0% |
| ! | AATAGTCATACACAGCTTTT+TGG | + | chr7.4:66182902-66182921 | None:intergenic | 30.0% |
| ! | AGAATTTTATGGAAGAATGG+AGG | - | chr7.4:66185009-66185028 | MS.gene30284:intron | 30.0% |
| ! | ATACACCAAAACCTTTTCAT+AGG | - | chr7.4:66182928-66182947 | MS.gene30284:CDS | 30.0% |
| ! | ATGGATTTTCATTTCATCAG+AGG | + | chr7.4:66182653-66182672 | None:intergenic | 30.0% |
| ! | CACATTTTCATGTCTTTTCT+TGG | - | chr7.4:66183587-66183606 | MS.gene30284:intron | 30.0% |
| ! | CCAACTTTTCAATATAACCT+AGG | + | chr7.4:66183546-66183565 | None:intergenic | 30.0% |
| ! | GTTGTTACTTAGGATAAAAG+TGG | + | chr7.4:66183251-66183270 | None:intergenic | 30.0% |
| ! | TGATACTTTGTTTGAGAGAT+TGG | - | chr7.4:66183312-66183331 | MS.gene30284:intron | 30.0% |
| ! | TTTAAGTTTATCAAGTCTGG+GGG | + | chr7.4:66184526-66184545 | None:intergenic | 30.0% |
| !! | AGTTTTTCAACAAGTCTTCT+AGG | - | chr7.4:66183068-66183087 | MS.gene30284:CDS | 30.0% |
| !! | ATTAGTTGATGAGAGTTACA+TGG | - | chr7.4:66184731-66184750 | MS.gene30284:intron | 30.0% |
| !! | GGTAGAATTTGTTGTTACTT+AGG | + | chr7.4:66183261-66183280 | None:intergenic | 30.0% |
| AAAAGTTGTACCTGGTAGTA+TGG | - | chr7.4:66184485-66184504 | MS.gene30284:intron | 35.0% | |
| AAACATTGAAAAGAGGAGAG+TGG | + | chr7.4:66183923-66183942 | None:intergenic | 35.0% | |
| AAATATTCAAGCTAGTGACG+AGG | - | chr7.4:66184653-66184672 | MS.gene30284:intron | 35.0% | |
| AAATGTGTAGAAAAGGGACT+TGG | + | chr7.4:66183574-66183593 | None:intergenic | 35.0% | |
| AATGGCTTAGTGAAGACATT+TGG | - | chr7.4:66182560-66182579 | MS.gene30284:CDS | 35.0% | |
| ACCTTCCATAAGATCAAAAG+TGG | + | chr7.4:66185060-66185079 | None:intergenic | 35.0% | |
| AGAAAATTGGAGTTGAGACA+TGG | - | chr7.4:66185093-66185112 | MS.gene30284:intron | 35.0% | |
| AGATGAAGTTGTGAATATGC+TGG | - | chr7.4:66184821-66184840 | MS.gene30284:intron | 35.0% | |
| AGTCAAAAACTCATATGCTC+TGG | + | chr7.4:66182524-66182543 | None:intergenic | 35.0% | |
| AGTGTACTAAAAGTTGTACC+TGG | - | chr7.4:66184477-66184496 | MS.gene30284:intron | 35.0% | |
| ATTAAGGGAGACCTATGAAA+AGG | + | chr7.4:66182942-66182961 | None:intergenic | 35.0% | |
| ATTCTTCACTTAGCCTATCA+TGG | - | chr7.4:66183882-66183901 | MS.gene30284:intron | 35.0% | |
| CAGATTTGATGAGAATGACA+TGG | - | chr7.4:66184569-66184588 | MS.gene30284:intron | 35.0% | |
| CCACCACATATGAACTTATA+TGG | + | chr7.4:66182743-66182762 | None:intergenic | 35.0% | |
| CCATATAAGTTCATATGTGG+TGG | - | chr7.4:66182740-66182759 | MS.gene30284:CDS | 35.0% | |
| CCTTCCATAAGATCAAAAGT+GGG | + | chr7.4:66185059-66185078 | None:intergenic | 35.0% | |
| GAAAATGATTGCATGCAAAG+TGG | - | chr7.4:66184909-66184928 | MS.gene30284:intron | 35.0% | |
| GAAAATTGGAGTTGAGACAT+GGG | - | chr7.4:66185094-66185113 | MS.gene30284:intron | 35.0% | |
| GAGCCATATAAGTTCATATG+TGG | - | chr7.4:66182737-66182756 | MS.gene30284:CDS | 35.0% | |
| GGTTTCTTTCTATTTCAGGA+TGG | - | chr7.4:66184278-66184297 | MS.gene30284:intron | 35.0% | |
| GTTTAAACTATGTCTGACGA+GGG | + | chr7.4:66183750-66183769 | None:intergenic | 35.0% | |
| TAAGTGAAGAATCACCACAA+AGG | + | chr7.4:66183874-66183893 | None:intergenic | 35.0% | |
| TATGCTAGAGAAATCCTGAA+AGG | - | chr7.4:66184969-66184988 | MS.gene30284:intron | 35.0% | |
| TGGTACAAGCAAAACAGAAT+TGG | + | chr7.4:66184382-66184401 | None:intergenic | 35.0% | |
| ! | TATTTCAGGATGGTCTTAAG+AGG | - | chr7.4:66184288-66184307 | MS.gene30284:intron | 35.0% |
| ! | TTTTGAATGTTTCAGGGATC+TGG | - | chr7.4:66185301-66185320 | MS.gene30284:CDS | 35.0% |
| ! | TTTTGATCTTATGGAAGGTG+AGG | - | chr7.4:66185061-66185080 | MS.gene30284:intron | 35.0% |
| !! | CACAGAAATGGATTAGAAAC+TGG | + | chr7.4:66183986-66184005 | None:intergenic | 35.0% |
| !! | GAGGTATTGACAGAGAAAAT+TGG | - | chr7.4:66185080-66185099 | MS.gene30284:intron | 35.0% |
| !! | TACGATTCTGATTGATTTGC+TGG | + | chr7.4:66184405-66184424 | None:intergenic | 35.0% |
| !! | TCCCAGATGTTTTGAATGAA+AGG | - | chr7.4:66182297-66182316 | MS.gene30284:intron | 35.0% |
| !! | TGATCTCATAATTCTAGAGC+TGG | - | chr7.4:66182262-66182281 | MS.gene30284:intron | 35.0% |
| !!! | TGGATATTTTAAAGTGGCCT+GGG | + | chr7.4:66182882-66182901 | None:intergenic | 35.0% |
| !!! | TTGGATATTTTAAAGTGGCC+TGG | + | chr7.4:66182883-66182902 | None:intergenic | 35.0% |
| AAAAATGTCTCCTCCTGACT+TGG | - | chr7.4:66183103-66183122 | MS.gene30284:CDS | 40.0% | |
| AAAGGTTCCTCATACCTTTG+TGG | - | chr7.4:66183857-66183876 | MS.gene30284:intron | 40.0% | |
| AAAGTGGGATGCATTTCATC+TGG | + | chr7.4:66185044-66185063 | None:intergenic | 40.0% | |
| AAGATCTACAGCCCTATATC+AGG | - | chr7.4:66185204-66185223 | MS.gene30284:intron | 40.0% | |
| AATGACATTAGAAAGCCGAG+TGG | - | chr7.4:66183395-66183414 | MS.gene30284:intron | 40.0% | |
| ACACTTAGACATATGTCACC+AGG | - | chr7.4:66182194-66182213 | MS.gene30284:CDS | 40.0% | |
| ACCTCTAAGCAACAAAGGAA+GGG | + | chr7.4:66183703-66183722 | None:intergenic | 40.0% | |
| ACTTGGCAAAAATTTGGCAC+TGG | - | chr7.4:66183120-66183139 | MS.gene30284:CDS | 40.0% | |
| ACTTTCTCTTACCTCCTTTC+AGG | + | chr7.4:66184986-66185005 | None:intergenic | 40.0% | |
| ATTGGATCATCATTAGCCGA+TGG | + | chr7.4:66185383-66185402 | None:intergenic | 40.0% | |
| ATTGTCTACACCAACTTCCT+AGG | + | chr7.4:66183483-66183502 | None:intergenic | 40.0% | |
| CATCATGAGGTCCAAAATCA+GGG | + | chr7.4:66182244-66182263 | None:intergenic | 40.0% | |
| CCAAACTCATAGACCATGAT+AGG | + | chr7.4:66183898-66183917 | None:intergenic | 40.0% | |
| CCTATCATGGTCTATGAGTT+TGG | - | chr7.4:66183895-66183914 | MS.gene30284:intron | 40.0% | |
| CGTTTAAACTATGTCTGACG+AGG | + | chr7.4:66183751-66183770 | None:intergenic | 40.0% | |
| CTGTGGAGATCAATGGATAT+TGG | - | chr7.4:66184706-66184725 | MS.gene30284:intron | 40.0% | |
| GAAACATCTCCAAACCTCAA+TGG | - | chr7.4:66182695-66182714 | MS.gene30284:CDS | 40.0% | |
| GAACTTGTAGGAGTTTCAAG+AGG | - | chr7.4:66183142-66183161 | MS.gene30284:CDS | 40.0% | |
| GAGAATCACGAATCTAGATC+AGG | - | chr7.4:66184603-66184622 | MS.gene30284:intron | 40.0% | |
| GAGTTACATGGACATGATTC+TGG | - | chr7.4:66184743-66184762 | MS.gene30284:intron | 40.0% | |
| GTGAATATGCTGGAATCAGA+TGG | - | chr7.4:66184831-66184850 | MS.gene30284:intron | 40.0% | |
| TAAGGAAAGAGAGAAAGGCA+GGG | + | chr7.4:66184246-66184265 | None:intergenic | 40.0% | |
| TCAATAAGCTCCATACTACC+AGG | + | chr7.4:66184498-66184517 | None:intergenic | 40.0% | |
| TCATCATGAGGTCCAAAATC+AGG | + | chr7.4:66182245-66182264 | None:intergenic | 40.0% | |
| TGGTAGTATGGAGCTTATTG+AGG | - | chr7.4:66184497-66184516 | MS.gene30284:intron | 40.0% | |
| TTGGAAAACTTGGGAAAGGA+AGG | + | chr7.4:66183648-66183667 | None:intergenic | 40.0% | |
| TTGTCTACACCAACTTCCTA+GGG | + | chr7.4:66183482-66183501 | None:intergenic | 40.0% | |
| ! | AACTCATATGCTCTGGCTTA+AGG | + | chr7.4:66182517-66182536 | None:intergenic | 40.0% |
| ! | AATTTGGCACTGGAACTTGT+AGG | - | chr7.4:66183130-66183149 | MS.gene30284:CDS | 40.0% |
| ! | ACTAGTTTGAAAACTCCCCT+AGG | - | chr7.4:66183526-66183545 | MS.gene30284:intron | 40.0% |
| ! | ACTCATATGCTCTGGCTTAA+GGG | + | chr7.4:66182516-66182535 | None:intergenic | 40.0% |
| ! | AGAATCACCACAAAGGTATG+AGG | + | chr7.4:66183867-66183886 | None:intergenic | 40.0% |
| ! | CAAATTTTTGCCAAGTCAGG+AGG | + | chr7.4:66183116-66183135 | None:intergenic | 40.0% |
| ! | CCAAAGTCGACTCTTATCAA+AGG | - | chr7.4:66183839-66183858 | MS.gene30284:intron | 40.0% |
| ! | CCTTTGATAAGAGTCGACTT+TGG | + | chr7.4:66183842-66183861 | None:intergenic | 40.0% |
| ! | GGAATCAGATGGATTTCCAA+AGG | - | chr7.4:66184842-66184861 | MS.gene30284:intron | 40.0% |
| ! | GGAGACCTATGAAAAGGTTT+TGG | + | chr7.4:66182936-66182955 | None:intergenic | 40.0% |
| ! | GTTGCATATCACCCTGATTT+TGG | - | chr7.4:66182230-66182249 | MS.gene30284:CDS | 40.0% |
| ! | TCTAGAGCTGGATGAGAAAT+TGG | - | chr7.4:66182274-66182293 | MS.gene30284:intron | 40.0% |
| ! | TGCCAAATTTTTGCCAAGTC+AGG | + | chr7.4:66183119-66183138 | None:intergenic | 40.0% |
| ! | TTCCTTTCCCAAGTTTTCCA+AGG | - | chr7.4:66183647-66183666 | MS.gene30284:intron | 40.0% |
| ! | TTTCAGAGAGCGTGCAAAAT+GGG | - | chr7.4:66185175-66185194 | MS.gene30284:intron | 40.0% |
| !! | CCCACTTTTGATCTTATGGA+AGG | - | chr7.4:66185056-66185075 | MS.gene30284:intron | 40.0% |
| !! | CTCCTGACTTGGCAAAAATT+TGG | - | chr7.4:66183114-66183133 | MS.gene30284:CDS | 40.0% |
| !! | GATTCTGATTGATTTGCTGG+TGG | + | chr7.4:66184402-66184421 | None:intergenic | 40.0% |
| !! | GATTTCCAAAGGTACTTGCA+AGG | - | chr7.4:66184853-66184872 | MS.gene30284:intron | 40.0% |
| !! | GCATCCCACTTTTGATCTTA+TGG | - | chr7.4:66185052-66185071 | MS.gene30284:intron | 40.0% |
| !! | TTTTCAGAGAGCGTGCAAAA+TGG | - | chr7.4:66185174-66185193 | MS.gene30284:intron | 40.0% |
| !!! | GAGAGCATTGTGCATCTTTT+TGG | - | chr7.4:66183802-66183821 | MS.gene30284:intron | 40.0% |
| AAACCTTCTGCAGAAAGACC+TGG | + | chr7.4:66185332-66185351 | None:intergenic | 45.0% | |
| AACTTGTCAAGCTATGCCCT+AGG | - | chr7.4:66183463-66183482 | MS.gene30284:intron | 45.0% | |
| AAGCTAGTGACGAGGAGTTA+AGG | - | chr7.4:66184661-66184680 | MS.gene30284:intron | 45.0% | |
| AGCTAGTGACGAGGAGTTAA+GGG | - | chr7.4:66184662-66184681 | MS.gene30284:intron | 45.0% | |
| AGGTGACCTCTAAGCAACAA+AGG | + | chr7.4:66183708-66183727 | None:intergenic | 45.0% | |
| ATTGCATGCAAAGTGGTGTG+TGG | - | chr7.4:66184916-66184935 | MS.gene30284:intron | 45.0% | |
| CAAAGAACTGCATCTTCGTC+AGG | + | chr7.4:66184318-66184337 | None:intergenic | 45.0% | |
| CAATGCCTTGCAAGTACCTT+TGG | + | chr7.4:66184861-66184880 | None:intergenic | 45.0% | |
| CACCTTGGAAAACTTGGGAA+AGG | + | chr7.4:66183652-66183671 | None:intergenic | 45.0% | |
| CACTCGAAAGACACAACCAT+CGG | - | chr7.4:66185364-66185383 | MS.gene30284:CDS | 45.0% | |
| CTTTCAGCTGTGGAGATCAA+TGG | - | chr7.4:66184699-66184718 | MS.gene30284:intron | 45.0% | |
| GACCTCTAAGCAACAAAGGA+AGG | + | chr7.4:66183704-66183723 | None:intergenic | 45.0% | |
| GACGACACCTTGGAAAACTT+GGG | + | chr7.4:66183657-66183676 | None:intergenic | 45.0% | |
| GCAACAGAAATCGATGATCC+TGG | + | chr7.4:66182215-66182234 | None:intergenic | 45.0% | |
| GCATTCTGTTGCTCTTCTCA+AGG | - | chr7.4:66182984-66183003 | MS.gene30284:CDS | 45.0% | |
| GCTAGAGAAATCCTGAAAGG+AGG | - | chr7.4:66184972-66184991 | MS.gene30284:intron | 45.0% | |
| GGGCAAAGTCTAATACTGAC+AGG | + | chr7.4:66182862-66182881 | None:intergenic | 45.0% | |
| GTAAGGAAAGAGAGAAAGGC+AGG | + | chr7.4:66184247-66184266 | None:intergenic | 45.0% | |
| GTCAGTATTAGACTTTGCCC+AGG | - | chr7.4:66182862-66182881 | MS.gene30284:CDS | 45.0% | |
| TCAAATGCATGACGACACCT+TGG | + | chr7.4:66183667-66183686 | None:intergenic | 45.0% | |
| TCTAAGTGAAGCTGACCACT+CGG | + | chr7.4:66183413-66183432 | None:intergenic | 45.0% | |
| TCTTCATGTCCTCCTTGAGT+TGG | - | chr7.4:66183612-66183631 | MS.gene30284:intron | 45.0% | |
| TGACGACACCTTGGAAAACT+TGG | + | chr7.4:66183658-66183677 | None:intergenic | 45.0% | |
| TGTGGAAGTTGGATGAGAAG+CGG | - | chr7.4:66184934-66184953 | MS.gene30284:intron | 45.0% | |
| TTGCTTGCATGTGTATGCCA+AGG | - | chr7.4:66184878-66184897 | MS.gene30284:intron | 45.0% | |
| ! | AGGTGTCGTCATGCATTTGA+AGG | - | chr7.4:66183667-66183686 | MS.gene30284:intron | 45.0% |
| ! | TGCACGCTCTCTGAAAAGAA+TGG | + | chr7.4:66185171-66185190 | None:intergenic | 45.0% |
| !! | ACTGACAGGTGAGCCATTTT+TGG | + | chr7.4:66182848-66182867 | None:intergenic | 45.0% |
| !!! | CTGACAGGTGAGCCATTTTT+GGG | + | chr7.4:66182847-66182866 | None:intergenic | 45.0% |
| !! | CTAATTAAAAAATATATTAA+GGG | + | chr7.4:66182957-66182976 | None:intergenic | 5.0% |
| !! | TCTAATTAAAAAATATATTA+AGG | + | chr7.4:66182958-66182977 | None:intergenic | 5.0% |
| !!! | AAAATTTTAATTAAAAGAAA+TGG | + | chr7.4:66183951-66183970 | None:intergenic | 5.0% |
| AGGGCAAAGAGAGCCTTTGA+GGG | + | chr7.4:66183731-66183750 | None:intergenic | 50.0% | |
| AGTGACGAGGAGTTAAGGGT+TGG | - | chr7.4:66184666-66184685 | MS.gene30284:intron | 50.0% | |
| ATTGCAGGCTCTTTCAGCTG+TGG | - | chr7.4:66184689-66184708 | MS.gene30284:intron | 50.0% | |
| CAAGCTATGCCCTAGGAAGT+TGG | - | chr7.4:66183470-66183489 | MS.gene30284:intron | 50.0% | |
| CTACATGCACCAACTCAAGG+AGG | + | chr7.4:66183624-66183643 | None:intergenic | 50.0% | |
| GCAAAGTGGTGTGTGGAAGT+TGG | - | chr7.4:66184923-66184942 | MS.gene30284:intron | 50.0% | |
| GGACTACATGCACCAACTCA+AGG | + | chr7.4:66183627-66183646 | None:intergenic | 50.0% | |
| GGAGTTAAGGGTTGGATTGC+AGG | - | chr7.4:66184674-66184693 | MS.gene30284:intron | 50.0% | |
| GTACCAGGTCTTTCTGCAGA+AGG | - | chr7.4:66185326-66185345 | MS.gene30284:CDS | 50.0% | |
| GTGGAAGTTGGATGAGAAGC+GGG | - | chr7.4:66184935-66184954 | MS.gene30284:intron | 50.0% | |
| TGGAAGGCAATGACGAGACA+CGG | + | chr7.4:66185130-66185149 | None:intergenic | 50.0% | |
| TTAGAGGTCACCTCCCTCAA+AGG | - | chr7.4:66183715-66183734 | MS.gene30284:intron | 50.0% | |
| TTCAGGGATCTGGATGTACC+AGG | - | chr7.4:66185311-66185330 | MS.gene30284:CDS | 50.0% | |
| ! | GAGAGCGTGCAAAATGGGAA+TGG | - | chr7.4:66185180-66185199 | MS.gene30284:intron | 50.0% |
| ! | GCCCTTCCTTTGTTGCTTAG+AGG | - | chr7.4:66183699-66183718 | MS.gene30284:intron | 50.0% |
| !! | AGAATGGAGAAGCGTTCAGC+TGG | + | chr7.4:66185155-66185174 | None:intergenic | 50.0% |
| AAGCGTTCAGCTGGAGTGGA+AGG | + | chr7.4:66185146-66185165 | None:intergenic | 55.0% | |
| ACAGCAGACTTCAGGAGGAG+CGG | - | chr7.4:66182169-66182188 | MS.gene30284:CDS | 55.0% | |
| AGGCAATGACGAGACACGGA+AGG | + | chr7.4:66185126-66185145 | None:intergenic | 55.0% | |
| CCAGAACCACAGCAGACTTC+AGG | - | chr7.4:66182161-66182180 | MS.gene30284:CDS | 55.0% | |
| CCTGAAGTCTGCTGTGGTTC+TGG | + | chr7.4:66182164-66182183 | None:intergenic | 55.0% | |
| GAACCACAGCAGACTTCAGG+AGG | - | chr7.4:66182164-66182183 | MS.gene30284:CDS | 55.0% | |
| GAGGGCAAAGAGAGCCTTTG+AGG | + | chr7.4:66183732-66183751 | None:intergenic | 55.0% | |
| ! | GCAAAGAGAGCCTTTGAGGG+AGG | + | chr7.4:66183728-66183747 | None:intergenic | 55.0% |
| GCTCCTCCTGAAGTCTGCTG+TGG | + | chr7.4:66182170-66182189 | None:intergenic | 60.0% | |
| !! | GGAGAAGCGTTCAGCTGGAG+TGG | + | chr7.4:66185150-66185169 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 66182155 | 66185418 | 66182155 | ID=MS.gene30284 |
| chr7.4 | mRNA | 66182155 | 66185418 | 66182155 | ID=MS.gene30284.t1;Parent=MS.gene30284 |
| chr7.4 | exon | 66185255 | 66185418 | 66185255 | ID=MS.gene30284.t1.exon1;Parent=MS.gene30284.t1 |
| chr7.4 | CDS | 66185255 | 66185418 | 66185255 | ID=cds.MS.gene30284.t1;Parent=MS.gene30284.t1 |
| chr7.4 | exon | 66182348 | 66183277 | 66182348 | ID=MS.gene30284.t1.exon2;Parent=MS.gene30284.t1 |
| chr7.4 | CDS | 66182348 | 66183277 | 66182348 | ID=cds.MS.gene30284.t1;Parent=MS.gene30284.t1 |
| chr7.4 | exon | 66182155 | 66182257 | 66182155 | ID=MS.gene30284.t1.exon3;Parent=MS.gene30284.t1 |
| chr7.4 | CDS | 66182155 | 66182257 | 66182155 | ID=cds.MS.gene30284.t1;Parent=MS.gene30284.t1 |
| Gene Sequence |
| Protein sequence |
