Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30425.t1 | XP_013444458.1 | 96.8 | 187 | 6 | 0 | 1 | 187 | 49 | 235 | 8.10E-101 | 376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30425.t1 | Q9C5D7 | 62.0 | 187 | 70 | 1 | 1 | 187 | 47 | 232 | 7.3e-66 | 251.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30425.t1 | I3SHI5 | 96.8 | 187 | 6 | 0 | 1 | 187 | 49 | 235 | 5.8e-101 | 376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051092 | MS.gene30425 | 0.887235 | 1.71E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30425.t1 | MTR_8g021225 | 96.791 | 187 | 6 | 0 | 1 | 187 | 49 | 235 | 1.30e-133 | 374 |
| MS.gene30425.t1 | MTR_8g101900 | 72.432 | 185 | 50 | 1 | 1 | 185 | 50 | 233 | 3.07e-87 | 256 |
| MS.gene30425.t1 | MTR_6g091680 | 69.730 | 185 | 55 | 1 | 1 | 185 | 53 | 236 | 1.43e-84 | 249 |
| MS.gene30425.t1 | MTR_4g094925 | 57.838 | 185 | 78 | 0 | 1 | 185 | 26 | 210 | 2.54e-78 | 233 |
| MS.gene30425.t1 | MTR_4g094925 | 57.838 | 185 | 78 | 0 | 1 | 185 | 57 | 241 | 1.15e-77 | 232 |
| MS.gene30425.t1 | MTR_4g085590 | 58.378 | 185 | 77 | 0 | 1 | 185 | 61 | 245 | 1.51e-75 | 227 |
| MS.gene30425.t1 | MTR_4g094815 | 57.838 | 185 | 78 | 0 | 1 | 185 | 62 | 246 | 1.78e-75 | 227 |
| MS.gene30425.t1 | MTR_4g094368 | 55.435 | 184 | 81 | 1 | 1 | 184 | 45 | 227 | 4.34e-68 | 207 |
| MS.gene30425.t1 | MTR_4g094898 | 57.838 | 185 | 78 | 0 | 1 | 185 | 1 | 185 | 5.46e-68 | 206 |
| MS.gene30425.t1 | MTR_4g094898 | 57.838 | 185 | 78 | 0 | 1 | 185 | 62 | 246 | 2.61e-67 | 206 |
| MS.gene30425.t1 | MTR_4g094812 | 57.754 | 187 | 79 | 0 | 1 | 187 | 60 | 246 | 1.40e-66 | 204 |
| MS.gene30425.t1 | MTR_2g070410 | 39.459 | 185 | 105 | 3 | 1 | 185 | 120 | 297 | 3.55e-42 | 143 |
| MS.gene30425.t1 | MTR_2g070410 | 40.000 | 140 | 83 | 1 | 1 | 140 | 120 | 258 | 9.71e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30425.t1 | AT4G26220 | 62.032 | 187 | 70 | 1 | 1 | 187 | 47 | 232 | 2.00e-85 | 251 |
| MS.gene30425.t1 | AT4G34050 | 57.297 | 185 | 79 | 0 | 1 | 185 | 73 | 257 | 6.59e-74 | 223 |
| MS.gene30425.t1 | AT4G34050 | 57.297 | 185 | 79 | 0 | 1 | 185 | 100 | 284 | 1.09e-73 | 223 |
| MS.gene30425.t1 | AT1G67980 | 54.595 | 185 | 80 | 2 | 1 | 185 | 50 | 230 | 2.89e-66 | 203 |
| MS.gene30425.t1 | AT1G24735 | 53.591 | 181 | 80 | 3 | 6 | 185 | 16 | 193 | 1.03e-63 | 195 |
| MS.gene30425.t1 | AT1G24735 | 52.688 | 186 | 84 | 3 | 1 | 185 | 56 | 238 | 3.05e-63 | 195 |
| MS.gene30425.t1 | AT1G24735 | 52.688 | 186 | 84 | 3 | 1 | 185 | 107 | 289 | 1.10e-62 | 196 |
| MS.gene30425.t1 | AT1G67990 | 50.811 | 185 | 88 | 2 | 1 | 185 | 50 | 231 | 6.33e-60 | 187 |
| MS.gene30425.t1 | AT1G67980 | 49.091 | 165 | 80 | 2 | 21 | 185 | 2 | 162 | 1.45e-47 | 153 |
| MS.gene30425.t1 | AT3G61990 | 39.779 | 181 | 102 | 3 | 5 | 185 | 116 | 289 | 3.07e-43 | 146 |
| MS.gene30425.t1 | AT3G62000 | 37.838 | 185 | 108 | 3 | 1 | 185 | 100 | 277 | 3.08e-42 | 143 |
| MS.gene30425.t1 | AT4G34050 | 53.279 | 122 | 57 | 0 | 64 | 185 | 25 | 146 | 1.83e-41 | 137 |
| MS.gene30425.t1 | AT3G62000 | 36.000 | 175 | 105 | 3 | 1 | 175 | 100 | 267 | 1.01e-34 | 125 |
Find 32 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGCTAA+TGG | 0.303172 | 8.1:+78190214 | MS.gene30425:CDS |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8.1:+78192625 | MS.gene30425:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8.1:+78192695 | MS.gene30425:CDS |
| CTTATTAAACTGATTAAGAT+TGG | 0.375961 | 8.1:+78192663 | MS.gene30425:CDS |
| CCCATTAGCTGACCCGCATC+AGG | 0.379564 | 8.1:-78190215 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8.1:+78192694 | MS.gene30425:CDS |
| TCTAAGAGTTTATCAAGAAC+TGG | 0.401004 | 8.1:-78192016 | None:intergenic |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8.1:+78191901 | MS.gene30425:intron |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8.1:-78190326 | None:intergenic |
| CCTGATGCGGGTCAGCTAAT+GGG | 0.423982 | 8.1:+78190215 | MS.gene30425:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8.1:+78192847 | MS.gene30425:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8.1:+78192825 | MS.gene30425:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8.1:-78192735 | None:intergenic |
| TTATCAAGAACTGGTAAAGC+TGG | 0.473174 | 8.1:-78192007 | None:intergenic |
| ATTAAACTGATTAAGATTGG+TGG | 0.498414 | 8.1:+78192666 | MS.gene30425:CDS |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8.1:+78190314 | MS.gene30425:CDS |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8.1:+78192712 | MS.gene30425:CDS |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8.1:+78192831 | MS.gene30425:CDS |
| ATGGGCACTGACCCTGATGC+GGG | 0.526950 | 8.1:+78190203 | MS.gene30425:CDS |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8.1:-78192709 | None:intergenic |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8.1:+78190319 | MS.gene30425:CDS |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8.1:+78192739 | MS.gene30425:CDS |
| ATGTTTATCAGCATCAACAT+AGG | 0.544072 | 8.1:-78192616 | None:intergenic |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8.1:+78192696 | MS.gene30425:CDS |
| TCAGTTTAATAAGCCTCTCA+TGG | 0.553102 | 8.1:-78192653 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8.1:+78191929 | MS.gene30425:CDS |
| CATGGGCACTGACCCTGATG+CGG | 0.559626 | 8.1:+78190202 | None:intergenic |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8.1:-78192710 | None:intergenic |
| ATTACTGGAATTACCATGAG+AGG | 0.588635 | 8.1:+78192640 | MS.gene30425:CDS |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8.1:+78192699 | MS.gene30425:CDS |
| CCATTAGCTGACCCGCATCA+GGG | 0.628902 | 8.1:-78190214 | None:intergenic |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.701760 | 8.1:-78190307 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACATTAATTAAATGACA+TGG | - | chr8.1:78191213-78191232 | None:intergenic | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | + | chr8.1:78192300-78192319 | MS.gene30425:intron | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | + | chr8.1:78191645-78191664 | MS.gene30425:intron | 15.0% |
| !!! | GATTTTTTTTTTTAAAACAG+CGG | + | chr8.1:78190391-78190410 | MS.gene30425:intron | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | - | chr8.1:78190966-78190985 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTGTTTTAGTTT+CGG | - | chr8.1:78190708-78190727 | None:intergenic | 15.0% |
| !! | ATCATTAACATGTACATATT+TGG | - | chr8.1:78190856-78190875 | None:intergenic | 20.0% |
| !! | CTTATTAAACTGATTAAGAT+TGG | + | chr8.1:78192663-78192682 | MS.gene30425:CDS | 20.0% |
| !!! | AAAATCTTTTACTACAATTG+TGG | + | chr8.1:78192212-78192231 | MS.gene30425:intron | 20.0% |
| !!! | AATTGTAGTAAAAGATTTTG+AGG | - | chr8.1:78192211-78192230 | None:intergenic | 20.0% |
| !!! | ACAAGGTTAAATTTTTACTA+TGG | - | chr8.1:78190833-78190852 | None:intergenic | 20.0% |
| !!! | TAATACAATGGTTCTATTTA+TGG | + | chr8.1:78191657-78191676 | MS.gene30425:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | - | chr8.1:78192591-78192610 | None:intergenic | 20.0% |
| ! | AAAAATACACATGGATATGT+TGG | - | chr8.1:78190364-78190383 | None:intergenic | 25.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | + | chr8.1:78192306-78192325 | MS.gene30425:intron | 25.0% |
| ! | AACAATACTGGAAAATTGAA+CGG | - | chr8.1:78191817-78191836 | None:intergenic | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | - | chr8.1:78190879-78190898 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | + | chr8.1:78192625-78192644 | MS.gene30425:CDS | 25.0% |
| ! | ATTAAACTGATTAAGATTGG+TGG | + | chr8.1:78192666-78192685 | MS.gene30425:CDS | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | - | chr8.1:78191459-78191478 | None:intergenic | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | + | chr8.1:78192471-78192490 | MS.gene30425:intron | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | + | chr8.1:78190260-78190279 | MS.gene30425:CDS | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | - | chr8.1:78192067-78192086 | None:intergenic | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | + | chr8.1:78191726-78191745 | MS.gene30425:intron | 25.0% |
| ! | TTAGATCAAGTTCAAATCTA+GGG | - | chr8.1:78190808-78190827 | None:intergenic | 25.0% |
| !! | AACATATCCATGTGTATTTT+TGG | + | chr8.1:78190363-78190382 | MS.gene30425:intron | 25.0% |
| !! | AGAGATAGATAATTTTCCTT+TGG | - | chr8.1:78192490-78192509 | None:intergenic | 25.0% |
| !! | TTTCTAGTGGAAACAATATT+TGG | - | chr8.1:78191171-78191190 | None:intergenic | 25.0% |
| !!! | TCTCTTTACCTTATTTTTCT+TGG | + | chr8.1:78191448-78191467 | MS.gene30425:intron | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | + | chr8.1:78191484-78191503 | MS.gene30425:intron | 25.0% |
| !!! | TTTCATTTGATTTTCATGAG+TGG | - | chr8.1:78190782-78190801 | None:intergenic | 25.0% |
| AAAGTTTGCGATAAAAAGTC+AGG | - | chr8.1:78190429-78190448 | None:intergenic | 30.0% | |
| AACATGTACATATTTGGACA+AGG | - | chr8.1:78190850-78190869 | None:intergenic | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | - | chr8.1:78191482-78191501 | None:intergenic | 30.0% | |
| ACTCCGATTTATATGAGAAA+AGG | + | chr8.1:78191101-78191120 | MS.gene30425:intron | 30.0% | |
| AGAAAAGGGTCATAGTAATT+CGG | + | chr8.1:78191116-78191135 | MS.gene30425:intron | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | + | chr8.1:78191949-78191968 | MS.gene30425:CDS | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | + | chr8.1:78192754-78192773 | MS.gene30425:CDS | 30.0% | |
| ATGTTTATCAGCATCAACAT+AGG | - | chr8.1:78192619-78192638 | None:intergenic | 30.0% | |
| CGTATATTATGCAAGGTTTA+AGG | + | chr8.1:78191360-78191379 | MS.gene30425:intron | 30.0% | |
| CTCCGATTTATATGAGAAAA+GGG | + | chr8.1:78191102-78191121 | MS.gene30425:intron | 30.0% | |
| CTTAGATCAAGTTCAAATCT+AGG | - | chr8.1:78190809-78190828 | None:intergenic | 30.0% | |
| GAAATTTGTCTTGCTTCAAT+TGG | + | chr8.1:78192825-78192844 | MS.gene30425:CDS | 30.0% | |
| GTTTCGCTTTAATATCTCTT+TGG | - | chr8.1:78190606-78190625 | None:intergenic | 30.0% | |
| TAGATCAAGTTCAAATCTAG+GGG | - | chr8.1:78190807-78190826 | None:intergenic | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | + | chr8.1:78192695-78192714 | MS.gene30425:CDS | 30.0% | |
| TCTAAGAGTTTATCAAGAAC+TGG | - | chr8.1:78192019-78192038 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | + | chr8.1:78192694-78192713 | MS.gene30425:CDS | 30.0% | |
| TTCAAAAGGGAAAATGCTTA+AGG | - | chr8.1:78190579-78190598 | None:intergenic | 30.0% | |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | + | chr8.1:78190272-78190291 | MS.gene30425:CDS | 30.0% |
| ! | GACCCTTTTCTCATATAAAT+CGG | - | chr8.1:78191107-78191126 | None:intergenic | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | - | chr8.1:78192469-78192488 | None:intergenic | 30.0% |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | + | chr8.1:78190883-78190902 | MS.gene30425:intron | 30.0% |
| !! | AAGCATTTTCCCTTTTGAAA+AGG | + | chr8.1:78190580-78190599 | MS.gene30425:intron | 30.0% |
| !! | GCCTAAACTTGTTTATGTTT+TGG | + | chr8.1:78192063-78192082 | MS.gene30425:intron | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | + | chr8.1:78192517-78192536 | MS.gene30425:intron | 30.0% |
| !!! | GTTTTTTGTTTTAGTTTCGG+TGG | - | chr8.1:78190705-78190724 | None:intergenic | 30.0% |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | - | chr8.1:78192759-78192778 | None:intergenic | 30.0% |
| !!! | TTGCCTTATTTTTTTTCTCC+TGG | - | chr8.1:78192760-78192779 | None:intergenic | 30.0% |
| AAAAGGGTCATAGTAATTCG+GGG | + | chr8.1:78191118-78191137 | MS.gene30425:intron | 35.0% | |
| AAACCTTGCATAATATACGC+AGG | - | chr8.1:78191359-78191378 | None:intergenic | 35.0% | |
| AAGGTGAATGAGTTAGAAAC+TGG | + | chr8.1:78191745-78191764 | MS.gene30425:intron | 35.0% | |
| AATCCTGCGTATATTATGCA+AGG | + | chr8.1:78191353-78191372 | MS.gene30425:intron | 35.0% | |
| ACATTGCATAATGTATGCAG+GGG | - | chr8.1:78191398-78191417 | None:intergenic | 35.0% | |
| ACCTCTTAGATGTTTAGAAG+TGG | - | chr8.1:78190751-78190770 | None:intergenic | 35.0% | |
| AGACATTGCATAATGTATGC+AGG | - | chr8.1:78191400-78191419 | None:intergenic | 35.0% | |
| AGCGAAACAAACATAGTAGA+AGG | + | chr8.1:78190618-78190637 | MS.gene30425:intron | 35.0% | |
| ATACTGGAAAATTGAACGGT+TGG | - | chr8.1:78191813-78191832 | None:intergenic | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | + | chr8.1:78192696-78192715 | MS.gene30425:CDS | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | + | chr8.1:78192640-78192659 | MS.gene30425:CDS | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | + | chr8.1:78192532-78192551 | MS.gene30425:intron | 35.0% | |
| CTTCCATTCATAAAAAAGGC+TGG | + | chr8.1:78191953-78191972 | MS.gene30425:CDS | 35.0% | |
| GAAAAGGGTCATAGTAATTC+GGG | + | chr8.1:78191117-78191136 | MS.gene30425:intron | 35.0% | |
| GACATTGCATAATGTATGCA+GGG | - | chr8.1:78191399-78191418 | None:intergenic | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | - | chr8.1:78191872-78191891 | None:intergenic | 35.0% | |
| GATCTACAACAACCATACAA+TGG | - | chr8.1:78191894-78191913 | None:intergenic | 35.0% | |
| GATTGATAGAGTCGAAATTG+TGG | + | chr8.1:78192156-78192175 | MS.gene30425:intron | 35.0% | |
| GGTGATTTAACTCCATTGTA+TGG | + | chr8.1:78191879-78191898 | MS.gene30425:intron | 35.0% | |
| GTCTCACTTATTCACCTAAA+AGG | - | chr8.1:78191501-78191520 | None:intergenic | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | + | chr8.1:78192847-78192866 | MS.gene30425:CDS | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | + | chr8.1:78191901-78191920 | MS.gene30425:intron | 35.0% | |
| TCAGTTTAATAAGCCTCTCA+TGG | - | chr8.1:78192656-78192675 | None:intergenic | 35.0% | |
| TCGTACACCAAAAATACACA+TGG | - | chr8.1:78190373-78190392 | None:intergenic | 35.0% | |
| TGCGTGAAAATCAACAATAC+TGG | - | chr8.1:78191829-78191848 | None:intergenic | 35.0% | |
| TTATCAAGAACTGGTAAAGC+TGG | - | chr8.1:78192010-78192029 | None:intergenic | 35.0% | |
| TTTCCACTAGAAATCGTACT+CGG | + | chr8.1:78191178-78191197 | MS.gene30425:intron | 35.0% | |
| ! | GTCCTACTTCATAAGCTTTT+CGG | - | chr8.1:78191934-78191953 | None:intergenic | 35.0% |
| ! | GTGGATTTTCAATTGCATAG+CGG | + | chr8.1:78190511-78190530 | MS.gene30425:intron | 35.0% |
| !! | ATCTCTTTGGCCTTTTCAAA+AGG | - | chr8.1:78190593-78190612 | None:intergenic | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | + | chr8.1:78190319-78190338 | MS.gene30425:CDS | 35.0% |
| !! | TCTCTTTGGCCTTTTCAAAA+GGG | - | chr8.1:78190592-78190611 | None:intergenic | 35.0% |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | - | chr8.1:78191959-78191978 | None:intergenic | 35.0% |
| AAACCAATCACATCTCATGC+TGG | + | chr8.1:78190464-78190483 | MS.gene30425:intron | 40.0% | |
| AACTGCGAACCTTTATGTTG+TGG | + | chr8.1:78192114-78192133 | MS.gene30425:intron | 40.0% | |
| AGGTGAATAAGTGAGACGTT+CGG | + | chr8.1:78191504-78191523 | MS.gene30425:intron | 40.0% | |
| ATATGGACACGAACACGATA+CGG | + | chr8.1:78192323-78192342 | MS.gene30425:intron | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | - | chr8.1:78190329-78190348 | None:intergenic | 40.0% | |
| GACCGAAAAGCTTATGAAGT+AGG | + | chr8.1:78191929-78191948 | MS.gene30425:CDS | 40.0% | |
| GCACTTAACATTCCTGATGA+TGG | + | chr8.1:78190314-78190333 | MS.gene30425:CDS | 40.0% | |
| GCCACTTCTAAACATCTAAG+AGG | + | chr8.1:78190747-78190766 | MS.gene30425:intron | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | - | chr8.1:78192458-78192477 | None:intergenic | 40.0% | |
| TCTCGTGAGCTTAACTAAGT+TGG | - | chr8.1:78191426-78191445 | None:intergenic | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | + | chr8.1:78191858-78191877 | MS.gene30425:intron | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | + | chr8.1:78192831-78192850 | MS.gene30425:CDS | 40.0% | |
| TTCCACTAGAAATCGTACTC+GGG | + | chr8.1:78191179-78191198 | MS.gene30425:intron | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | - | chr8.1:78191929-78191948 | None:intergenic | 40.0% |
| ! | CGCATTTTGCCACAACATAA+AGG | - | chr8.1:78192126-78192145 | None:intergenic | 40.0% |
| !! | AAAAATGGGATAGTGGGTAG+TGG | + | chr8.1:78190492-78190511 | MS.gene30425:intron | 40.0% |
| AAGAAGCTCTTCTAGATCCC+AGG | + | chr8.1:78192739-78192758 | MS.gene30425:CDS | 45.0% | |
| GGATCTAGAAGAGCTTCTTC+AGG | - | chr8.1:78192738-78192757 | None:intergenic | 45.0% | |
| GGTGAATAAGTGAGACGTTC+GGG | + | chr8.1:78191505-78191524 | MS.gene30425:intron | 45.0% | |
| GTGAATAAGTGAGACGTTCG+GGG | + | chr8.1:78191506-78191525 | MS.gene30425:intron | 45.0% | |
| TAGTAATTCGGGGTTCAGTC+AGG | + | chr8.1:78191128-78191147 | MS.gene30425:intron | 45.0% | |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | - | chr8.1:78190310-78190329 | None:intergenic | 45.0% |
| ! | TATGATAACACCCTTTGGGG+TGG | + | chr8.1:78192699-78192718 | MS.gene30425:CDS | 45.0% |
| !! | ACCCACTATCCCATTTTTGC+CGG | - | chr8.1:78190490-78190509 | None:intergenic | 45.0% |
| ACACGACAAGTGTCTGACAC+CGG | + | chr8.1:78192420-78192439 | MS.gene30425:intron | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | - | chr8.1:78192713-78192732 | None:intergenic | 50.0% | |
| CAATCACATCTCATGCTGGC+CGG | + | chr8.1:78190468-78190487 | MS.gene30425:intron | 50.0% | |
| GCCGGCAAAAATGGGATAGT+GGG | + | chr8.1:78190486-78190505 | MS.gene30425:intron | 50.0% | |
| TCATGCTGGCCGGCAAAAAT+GGG | + | chr8.1:78190478-78190497 | MS.gene30425:intron | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | - | chr8.1:78192442-78192461 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | - | chr8.1:78192712-78192731 | None:intergenic | 50.0% | |
| TGCATAATGTATGCAGGGGC+CGG | - | chr8.1:78191394-78191413 | None:intergenic | 50.0% | |
| ! | AAGGTTTAAGGTTCGAGCCC+CGG | + | chr8.1:78191372-78191391 | MS.gene30425:intron | 50.0% |
| ! | AGCCCGAGTACGATTTCTAG+TGG | - | chr8.1:78191184-78191203 | None:intergenic | 50.0% |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | + | chr8.1:78192712-78192731 | MS.gene30425:CDS | 50.0% |
| ACCGGAACACGTCTTATCCG+AGG | + | chr8.1:78192438-78192457 | MS.gene30425:intron | 55.0% | |
| CATAATGTATGCAGGGGCCG+GGG | - | chr8.1:78191392-78191411 | None:intergenic | 55.0% | |
| CCATTAGCTGACCCGCATCA+GGG | - | chr8.1:78190217-78190236 | None:intergenic | 55.0% | |
| CCTGATGCGGGTCAGCTAAT+GGG | + | chr8.1:78190215-78190234 | MS.gene30425:CDS | 55.0% | |
| CGGCCAGCATGAGATGTGAT+TGG | - | chr8.1:78190470-78190489 | None:intergenic | 55.0% | |
| CTCATGCTGGCCGGCAAAAA+TGG | + | chr8.1:78190477-78190496 | MS.gene30425:intron | 55.0% | |
| GCATAATGTATGCAGGGGCC+GGG | - | chr8.1:78191393-78191412 | None:intergenic | 55.0% | |
| GGCCGGCAAAAATGGGATAG+TGG | + | chr8.1:78190485-78190504 | MS.gene30425:intron | 55.0% | |
| CCCATTAGCTGACCCGCATC+AGG | - | chr8.1:78190218-78190237 | None:intergenic | 60.0% | |
| CCCTGATGCGGGTCAGCTAA+TGG | + | chr8.1:78190214-78190233 | MS.gene30425:CDS | 60.0% | |
| TTGTCGTGTCCGACGTCGCA+CGG | - | chr8.1:78192409-78192428 | None:intergenic | 60.0% | |
| !! | ATGGGCACTGACCCTGATGC+GGG | + | chr8.1:78190203-78190222 | MS.gene30425:CDS | 60.0% |
| GTGTCCGACGTCGCACGGCA+CGG | - | chr8.1:78192404-78192423 | None:intergenic | 70.0% | |
| GTGTCCGTGCCGTGCGACGT+CGG | + | chr8.1:78192397-78192416 | MS.gene30425:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 78190203 | 78192881 | 78190203 | ID=MS.gene30425 |
| chr8.1 | mRNA | 78190203 | 78192881 | 78190203 | ID=MS.gene30425.t1;Parent=MS.gene30425 |
| chr8.1 | exon | 78190203 | 78190340 | 78190203 | ID=MS.gene30425.t1.exon1;Parent=MS.gene30425.t1 |
| chr8.1 | CDS | 78190203 | 78190340 | 78190203 | ID=cds.MS.gene30425.t1;Parent=MS.gene30425.t1 |
| chr8.1 | exon | 78191911 | 78192042 | 78191911 | ID=MS.gene30425.t1.exon2;Parent=MS.gene30425.t1 |
| chr8.1 | CDS | 78191911 | 78192042 | 78191911 | ID=cds.MS.gene30425.t1;Parent=MS.gene30425.t1 |
| chr8.1 | exon | 78192588 | 78192881 | 78192588 | ID=MS.gene30425.t1.exon3;Parent=MS.gene30425.t1 |
| chr8.1 | CDS | 78192588 | 78192881 | 78192588 | ID=cds.MS.gene30425.t1;Parent=MS.gene30425.t1 |
| Gene Sequence |
| Protein sequence |
