Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051092.t1 | XP_013444458.1 | 96.6 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 1.50E-128 | 468.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051092.t1 | Q9C5D7 | 62.4 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 8.5e-80 | 298.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051092.t1 | I3SHI5 | 96.6 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 1.1e-128 | 468.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051092 | MS.gene25100 | 0.965343 | 1.76E-124 | -1.69E-46 |
| MS.gene051092 | MS.gene30425 | 0.887235 | 1.71E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051092 | MS.gene053539 | PPI |
| MS.gene26463 | MS.gene051092 | PPI |
| MS.gene35069 | MS.gene051092 | PPI |
| MS.gene028389 | MS.gene051092 | PPI |
| MS.gene059423 | MS.gene051092 | PPI |
| MS.gene053535 | MS.gene051092 | PPI |
| MS.gene28756 | MS.gene051092 | PPI |
| MS.gene047856 | MS.gene051092 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051092.t1 | MTR_8g021225 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 1.04e-170 | 469 |
| MS.gene051092.t1 | MTR_8g101900 | 72.926 | 229 | 61 | 1 | 5 | 233 | 6 | 233 | 1.91e-110 | 317 |
| MS.gene051092.t1 | MTR_6g091680 | 69.058 | 223 | 68 | 1 | 11 | 233 | 15 | 236 | 2.05e-103 | 299 |
| MS.gene051092.t1 | MTR_4g094925 | 55.172 | 232 | 104 | 0 | 2 | 233 | 10 | 241 | 6.93e-94 | 275 |
| MS.gene051092.t1 | MTR_4g085590 | 57.965 | 226 | 95 | 0 | 8 | 233 | 20 | 245 | 1.61e-93 | 275 |
| MS.gene051092.t1 | MTR_4g094815 | 56.951 | 223 | 96 | 0 | 11 | 233 | 24 | 246 | 1.96e-90 | 267 |
| MS.gene051092.t1 | MTR_4g094898 | 57.399 | 223 | 95 | 0 | 11 | 233 | 24 | 246 | 1.20e-82 | 247 |
| MS.gene051092.t1 | MTR_4g094812 | 56.579 | 228 | 99 | 0 | 8 | 235 | 19 | 246 | 2.13e-81 | 244 |
| MS.gene051092.t1 | MTR_4g094368 | 54.018 | 224 | 100 | 2 | 11 | 232 | 5 | 227 | 1.21e-79 | 239 |
| MS.gene051092.t1 | MTR_4g094925 | 54.229 | 201 | 92 | 0 | 33 | 233 | 10 | 210 | 1.81e-78 | 235 |
| MS.gene051092.t1 | MTR_4g094898 | 58.378 | 185 | 77 | 0 | 49 | 233 | 1 | 185 | 5.47e-68 | 207 |
| MS.gene051092.t1 | MTR_2g070410 | 40.092 | 217 | 120 | 4 | 17 | 233 | 91 | 297 | 6.95e-48 | 160 |
| MS.gene051092.t1 | MTR_2g070410 | 40.698 | 172 | 98 | 2 | 17 | 188 | 91 | 258 | 2.57e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051092.t1 | AT4G26220 | 62.389 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 1.21e-103 | 300 |
| MS.gene051092.t1 | AT4G34050 | 57.522 | 226 | 96 | 0 | 8 | 233 | 59 | 284 | 1.01e-92 | 274 |
| MS.gene051092.t1 | AT4G34050 | 57.522 | 226 | 96 | 0 | 8 | 233 | 32 | 257 | 1.23e-92 | 273 |
| MS.gene051092.t1 | AT1G67980 | 54.867 | 226 | 96 | 3 | 10 | 233 | 9 | 230 | 1.78e-80 | 241 |
| MS.gene051092.t1 | AT1G24735 | 53.304 | 227 | 100 | 5 | 10 | 233 | 15 | 238 | 4.62e-76 | 230 |
| MS.gene051092.t1 | AT1G67990 | 51.327 | 226 | 105 | 3 | 10 | 233 | 9 | 231 | 2.79e-73 | 223 |
| MS.gene051092.t1 | AT1G24735 | 43.525 | 278 | 100 | 5 | 10 | 233 | 15 | 289 | 3.33e-68 | 212 |
| MS.gene051092.t1 | AT1G24735 | 54.144 | 181 | 79 | 3 | 54 | 233 | 16 | 193 | 9.96e-64 | 197 |
| MS.gene051092.t1 | AT1G67980 | 49.697 | 165 | 79 | 2 | 69 | 233 | 2 | 162 | 1.78e-47 | 154 |
| MS.gene051092.t1 | AT3G61990 | 40.000 | 205 | 113 | 4 | 29 | 233 | 95 | 289 | 2.32e-47 | 158 |
| MS.gene051092.t1 | AT3G62000 | 37.561 | 205 | 121 | 3 | 29 | 233 | 80 | 277 | 9.73e-46 | 154 |
| MS.gene051092.t1 | AT4G34050 | 54.098 | 122 | 56 | 0 | 112 | 233 | 25 | 146 | 1.21e-41 | 139 |
| MS.gene051092.t1 | AT3G62000 | 35.897 | 195 | 118 | 3 | 29 | 223 | 80 | 267 | 4.83e-38 | 135 |
Find 43 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGCTAA+TGG | 0.303172 | 8.3:+69994437 | MS.gene051092:CDS |
| AAGAGACTCTCAAAGAATTA+AGG | 0.322243 | 8.3:+69993722 | MS.gene051092:CDS |
| TACTTATATTAGGCACTTCA+TGG | 0.334325 | 8.3:+69994407 | MS.gene051092:intron |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8.3:+69996831 | MS.gene051092:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8.3:+69996901 | MS.gene051092:CDS |
| CTTATTAAACTGATTAAGAT+TGG | 0.375961 | 8.3:+69996869 | MS.gene051092:CDS |
| CCCATTAGCTGACCCGCATC+AGG | 0.379564 | 8.3:-69994438 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8.3:+69996900 | MS.gene051092:CDS |
| TCTAAGAGTTTATCAAGAAC+TGG | 0.401004 | 8.3:-69996221 | None:intergenic |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8.3:+69996106 | MS.gene051092:intron |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8.3:-69994549 | None:intergenic |
| CCTGATGCGGGTCAGCTAAT+GGG | 0.423982 | 8.3:+69994438 | MS.gene051092:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8.3:+69997053 | MS.gene051092:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8.3:+69997031 | MS.gene051092:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8.3:-69996941 | None:intergenic |
| TTATCAAGAACTGGTAAAGC+TGG | 0.473174 | 8.3:-69996212 | None:intergenic |
| ATTAAACTGATTAAGATTGG+TGG | 0.498414 | 8.3:+69996872 | MS.gene051092:CDS |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8.3:+69994537 | MS.gene051092:CDS |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8.3:+69996918 | MS.gene051092:CDS |
| TTGAGAGTCTCTTGTTCTCG+TGG | 0.517195 | 8.3:-69993712 | None:intergenic |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8.3:+69997037 | MS.gene051092:CDS |
| ATGGGCACTGACCCTGATGC+GGG | 0.526950 | 8.3:+69994426 | MS.gene051092:CDS |
| TGAGAGTCTCTTGTTCTCGT+GGG | 0.528224 | 8.3:-69993711 | None:intergenic |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8.3:-69996915 | None:intergenic |
| ACTTATATTAGGCACTTCAT+GGG | 0.538445 | 8.3:+69994408 | MS.gene051092:intron |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8.3:+69994542 | MS.gene051092:CDS |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8.3:+69996945 | MS.gene051092:CDS |
| AACGTAGCAAGTAAATATGA+TGG | 0.548955 | 8.3:+69993529 | MS.gene051092:CDS |
| TTGTTCTCGTGGGTAAACAC+TGG | 0.550287 | 8.3:-69993701 | None:intergenic |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8.3:+69996902 | MS.gene051092:CDS |
| TCAGTTTAATAAGCCTCTCA+TGG | 0.553102 | 8.3:-69996859 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8.3:+69996134 | MS.gene051092:CDS |
| CATGGGCACTGACCCTGATG+CGG | 0.559626 | 8.3:+69994425 | MS.gene051092:CDS |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8.3:-69996916 | None:intergenic |
| ATGATGGTATATTGCAGAGT+GGG | 0.565378 | 8.3:+69993545 | MS.gene051092:CDS |
| ATTACTGGAATTACCATGAG+AGG | 0.588635 | 8.3:+69996846 | MS.gene051092:CDS |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8.3:+69996905 | MS.gene051092:CDS |
| CCATTAGCTGACCCGCATCA+GGG | 0.628902 | 8.3:-69994437 | None:intergenic |
| ATGTTTATCAGCATCAACAA+AGG | 0.646431 | 8.3:-69996822 | None:intergenic |
| TATGATGGTATATTGCAGAG+TGG | 0.646886 | 8.3:+69993544 | MS.gene051092:CDS |
| GTACATAGGGTAGCTTGCAG+TGG | 0.650373 | 8.3:-69993749 | None:intergenic |
| GCAGAGTGGGAATTTGACCA+AGG | 0.656131 | 8.3:+69993558 | MS.gene051092:CDS |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.701760 | 8.3:-69994530 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAAAATTATTTTT+TGG | + | chr8.3:69993845-69993864 | MS.gene051092:intron | 0.0% |
| !!! | ATAATATAAATTATTTTATT+TGG | + | chr8.3:69993948-69993967 | MS.gene051092:intron | 0.0% |
| !!! | ATATAAATTATTTTATTTGG+AGG | + | chr8.3:69993951-69993970 | MS.gene051092:intron | 10.0% |
| !!! | ATTATATTTTTCTAATTAGT+TGG | + | chr8.3:69993607-69993626 | MS.gene051092:intron | 10.0% |
| !!! | TTAATTTTTTGTTTTAGTTT+CGG | - | chr8.3:69994920-69994939 | None:intergenic | 10.0% |
| !! | AAAGATATAATTCCTTTATA+TGG | - | chr8.3:69994081-69994100 | None:intergenic | 15.0% |
| !! | AATACATTAATTAAATGACA+TGG | - | chr8.3:69995418-69995437 | None:intergenic | 15.0% |
| !! | ATTAATTATGTCAAAAAGTA+TGG | + | chr8.3:69993791-69993810 | MS.gene051092:intron | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | + | chr8.3:69996505-69996524 | MS.gene051092:intron | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | + | chr8.3:69995850-69995869 | MS.gene051092:intron | 15.0% |
| !!! | GATTTTTTTTTTTAAAACAG+CGG | + | chr8.3:69994614-69994633 | MS.gene051092:intron | 15.0% |
| !!! | GTTTTTTAACTTTATTATGT+TGG | + | chr8.3:69993584-69993603 | MS.gene051092:intron | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | - | chr8.3:69995171-69995190 | None:intergenic | 15.0% |
| !!! | TTTTAGTTAATAATGGAAAA+AGG | - | chr8.3:69993977-69993996 | None:intergenic | 15.0% |
| !! | ATCATTAACATGTACATATT+TGG | - | chr8.3:69995061-69995080 | None:intergenic | 20.0% |
| !! | CTTATTAAACTGATTAAGAT+TGG | + | chr8.3:69996869-69996888 | MS.gene051092:CDS | 20.0% |
| !! | TTATATGCAAACATAATCAA+TGG | + | chr8.3:69994261-69994280 | MS.gene051092:intron | 20.0% |
| !!! | AAAATCTTTTACTACAATTG+TGG | + | chr8.3:69996417-69996436 | MS.gene051092:intron | 20.0% |
| !!! | AATTGTAGTAAAAGATTTTG+AGG | - | chr8.3:69996416-69996435 | None:intergenic | 20.0% |
| !!! | ACAAGGTTAAATTTTTACTA+TGG | - | chr8.3:69995038-69995057 | None:intergenic | 20.0% |
| !!! | ATATACTAACACAAAACTTT+TGG | - | chr8.3:69993673-69993692 | None:intergenic | 20.0% |
| !!! | TAATACAATGGTTCTATTTA+TGG | + | chr8.3:69995862-69995881 | MS.gene051092:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | - | chr8.3:69996797-69996816 | None:intergenic | 20.0% |
| ! | AAAAATACACATGGATATGT+TGG | - | chr8.3:69994587-69994606 | None:intergenic | 25.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | + | chr8.3:69996511-69996530 | MS.gene051092:intron | 25.0% |
| ! | AACAATACTGGAAAATTGAA+CGG | - | chr8.3:69996022-69996041 | None:intergenic | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | - | chr8.3:69995084-69995103 | None:intergenic | 25.0% |
| ! | AGATGTAATATGATAACTTG+AGG | + | chr8.3:69994200-69994219 | MS.gene051092:intron | 25.0% |
| ! | AGCTAATAAATTACGTACAT+AGG | - | chr8.3:69993766-69993785 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | + | chr8.3:69996831-69996850 | MS.gene051092:CDS | 25.0% |
| ! | ATTAAACTGATTAAGATTGG+TGG | + | chr8.3:69996872-69996891 | MS.gene051092:CDS | 25.0% |
| ! | ATTATGCATGTTCCATATAA+AGG | + | chr8.3:69994066-69994085 | MS.gene051092:intron | 25.0% |
| ! | CAACCTCTTAAATTAATCAA+GGG | - | chr8.3:69994016-69994035 | None:intergenic | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | - | chr8.3:69995664-69995683 | None:intergenic | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | + | chr8.3:69996677-69996696 | MS.gene051092:intron | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | + | chr8.3:69994483-69994502 | MS.gene051092:CDS | 25.0% |
| ! | GCTAATAAATTACGTACATA+GGG | - | chr8.3:69993765-69993784 | None:intergenic | 25.0% |
| ! | TAAAGTTAAAAAACGAACCT+TGG | - | chr8.3:69993578-69993597 | None:intergenic | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | - | chr8.3:69996272-69996291 | None:intergenic | 25.0% |
| ! | TGCATAATCTAATTGAAATG+CGG | - | chr8.3:69994054-69994073 | None:intergenic | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | + | chr8.3:69995931-69995950 | MS.gene051092:intron | 25.0% |
| ! | TTAACATTAACTATCCAACT+TGG | - | chr8.3:69994227-69994246 | None:intergenic | 25.0% |
| ! | TTAGATCAAGTTCAAATCTA+GGG | - | chr8.3:69995013-69995032 | None:intergenic | 25.0% |
| !! | AACATATCCATGTGTATTTT+TGG | + | chr8.3:69994586-69994605 | MS.gene051092:intron | 25.0% |
| !! | AGAGATAGATAATTTTCCTT+TGG | - | chr8.3:69996696-69996715 | None:intergenic | 25.0% |
| !! | CTCAAAGATAACAATTTTGA+TGG | - | chr8.3:69993875-69993894 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTTTTAGTTTCGG+TGG | - | chr8.3:69994917-69994936 | None:intergenic | 25.0% |
| !!! | TCTCTTTACCTTATTTTTCT+TGG | + | chr8.3:69995653-69995672 | MS.gene051092:intron | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | + | chr8.3:69995689-69995708 | MS.gene051092:intron | 25.0% |
| !!! | TTTCATTTGATTTTCATGAG+TGG | - | chr8.3:69994987-69995006 | None:intergenic | 25.0% |
| AACATGTACATATTTGGACA+AGG | - | chr8.3:69995055-69995074 | None:intergenic | 30.0% | |
| AACGTAGCAAGTAAATATGA+TGG | + | chr8.3:69993529-69993548 | MS.gene051092:CDS | 30.0% | |
| AAGAGACTCTCAAAGAATTA+AGG | + | chr8.3:69993722-69993741 | MS.gene051092:CDS | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | - | chr8.3:69995687-69995706 | None:intergenic | 30.0% | |
| ACTCCGATTTATATGAGAAA+AGG | + | chr8.3:69995306-69995325 | MS.gene051092:intron | 30.0% | |
| ACTTATATTAGGCACTTCAT+GGG | + | chr8.3:69994408-69994427 | MS.gene051092:intron | 30.0% | |
| AGAAAAGGGTCATAGTAATT+CGG | + | chr8.3:69995321-69995340 | MS.gene051092:intron | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | + | chr8.3:69996154-69996173 | MS.gene051092:CDS | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | + | chr8.3:69996960-69996979 | MS.gene051092:CDS | 30.0% | |
| ATGTTTATCAGCATCAACAA+AGG | - | chr8.3:69996825-69996844 | None:intergenic | 30.0% | |
| CAACCCTTGATTAATTTAAG+AGG | + | chr8.3:69994010-69994029 | MS.gene051092:intron | 30.0% | |
| CATAATCTAATTGAAATGCG+GGG | - | chr8.3:69994052-69994071 | None:intergenic | 30.0% | |
| CCAACCTCTTAAATTAATCA+AGG | - | chr8.3:69994017-69994036 | None:intergenic | 30.0% | |
| CCTTGATTAATTTAAGAGGT+TGG | + | chr8.3:69994014-69994033 | MS.gene051092:intron | 30.0% | |
| CGTATATTATGCAAGGTTTA+AGG | + | chr8.3:69995565-69995584 | MS.gene051092:intron | 30.0% | |
| CTCCGATTTATATGAGAAAA+GGG | + | chr8.3:69995307-69995326 | MS.gene051092:intron | 30.0% | |
| CTTAGATCAAGTTCAAATCT+AGG | - | chr8.3:69995014-69995033 | None:intergenic | 30.0% | |
| GAAATTTGTCTTGCTTCAAT+TGG | + | chr8.3:69997031-69997050 | MS.gene051092:CDS | 30.0% | |
| GCATAATCTAATTGAAATGC+GGG | - | chr8.3:69994053-69994072 | None:intergenic | 30.0% | |
| GTTTCGCTTTAATATCTCTT+TGG | - | chr8.3:69994818-69994837 | None:intergenic | 30.0% | |
| TACTTATATTAGGCACTTCA+TGG | + | chr8.3:69994407-69994426 | MS.gene051092:intron | 30.0% | |
| TAGATCAAGTTCAAATCTAG+GGG | - | chr8.3:69995012-69995031 | None:intergenic | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | + | chr8.3:69996901-69996920 | MS.gene051092:CDS | 30.0% | |
| TCTAAGAGTTTATCAAGAAC+TGG | - | chr8.3:69996224-69996243 | None:intergenic | 30.0% | |
| TCTCTAGTGGAAACAATATT+TGG | - | chr8.3:69995376-69995395 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | + | chr8.3:69996900-69996919 | MS.gene051092:CDS | 30.0% | |
| TTCAAAAGGGAAAATGCTTA+AGG | - | chr8.3:69994791-69994810 | None:intergenic | 30.0% | |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | + | chr8.3:69994495-69994514 | MS.gene051092:CDS | 30.0% |
| ! | GACCCTTTTCTCATATAAAT+CGG | - | chr8.3:69995312-69995331 | None:intergenic | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | - | chr8.3:69996675-69996694 | None:intergenic | 30.0% |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | + | chr8.3:69995088-69995107 | MS.gene051092:intron | 30.0% |
| !! | AAGCATTTTCCCTTTTGAAA+AGG | + | chr8.3:69994792-69994811 | MS.gene051092:intron | 30.0% |
| !! | GCCTAAACTTGTTTATGTTT+TGG | + | chr8.3:69996268-69996287 | MS.gene051092:intron | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | + | chr8.3:69996723-69996742 | MS.gene051092:intron | 30.0% |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | - | chr8.3:69996965-69996984 | None:intergenic | 30.0% |
| !!! | TTGCCTTATTTTTTTTCTCC+TGG | - | chr8.3:69996966-69996985 | None:intergenic | 30.0% |
| AAAAGGGTCATAGTAATTCG+GGG | + | chr8.3:69995323-69995342 | MS.gene051092:intron | 35.0% | |
| AAACCTTGCATAATATACGC+AGG | - | chr8.3:69995564-69995583 | None:intergenic | 35.0% | |
| AAGGTGAATGAGTTAGAAAC+TGG | + | chr8.3:69995950-69995969 | MS.gene051092:intron | 35.0% | |
| AATCCTGCGTATATTATGCA+AGG | + | chr8.3:69995558-69995577 | MS.gene051092:intron | 35.0% | |
| ACATTGCATAATGTATGCAG+GGG | - | chr8.3:69995603-69995622 | None:intergenic | 35.0% | |
| ACCTCTTAGATGTTTAGAAG+TGG | - | chr8.3:69994956-69994975 | None:intergenic | 35.0% | |
| AGACATTGCATAATGTATGC+AGG | - | chr8.3:69995605-69995624 | None:intergenic | 35.0% | |
| AGCGAAACAAACATAGTAGA+AGG | + | chr8.3:69994830-69994849 | MS.gene051092:intron | 35.0% | |
| ATACTGGAAAATTGAACGGT+TGG | - | chr8.3:69996018-69996037 | None:intergenic | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | + | chr8.3:69996902-69996921 | MS.gene051092:CDS | 35.0% | |
| ATGATGGTATATTGCAGAGT+GGG | + | chr8.3:69993545-69993564 | MS.gene051092:CDS | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | + | chr8.3:69996846-69996865 | MS.gene051092:CDS | 35.0% | |
| CAACACACATGTATGGTAAA+AGG | - | chr8.3:69994309-69994328 | None:intergenic | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | + | chr8.3:69996738-69996757 | MS.gene051092:intron | 35.0% | |
| CTTCCATTCATAAAAAAGGC+TGG | + | chr8.3:69996158-69996177 | MS.gene051092:CDS | 35.0% | |
| GAAAAGGGTCATAGTAATTC+GGG | + | chr8.3:69995322-69995341 | MS.gene051092:intron | 35.0% | |
| GACATTGCATAATGTATGCA+GGG | - | chr8.3:69995604-69995623 | None:intergenic | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | - | chr8.3:69996077-69996096 | None:intergenic | 35.0% | |
| GATCTACAACAACCATACAA+TGG | - | chr8.3:69996099-69996118 | None:intergenic | 35.0% | |
| GATTGATAGAGTCGAAATTG+TGG | + | chr8.3:69996361-69996380 | MS.gene051092:intron | 35.0% | |
| GCAAGATGTATGATGATTTG+AGG | - | chr8.3:69994179-69994198 | None:intergenic | 35.0% | |
| GGTGATTTAACTCCATTGTA+TGG | + | chr8.3:69996084-69996103 | MS.gene051092:intron | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | + | chr8.3:69997053-69997072 | MS.gene051092:CDS | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | + | chr8.3:69996106-69996125 | MS.gene051092:intron | 35.0% | |
| TATGATGGTATATTGCAGAG+TGG | + | chr8.3:69993544-69993563 | MS.gene051092:CDS | 35.0% | |
| TCAGTTTAATAAGCCTCTCA+TGG | - | chr8.3:69996862-69996881 | None:intergenic | 35.0% | |
| TCGTACACCAAAAATACACA+TGG | - | chr8.3:69994596-69994615 | None:intergenic | 35.0% | |
| TGCGTGAAAATCAACAATAC+TGG | - | chr8.3:69996034-69996053 | None:intergenic | 35.0% | |
| TTATCAAGAACTGGTAAAGC+TGG | - | chr8.3:69996215-69996234 | None:intergenic | 35.0% | |
| ! | ATGATGATTTGAGGTGCAAA+CGG | - | chr8.3:69994170-69994189 | None:intergenic | 35.0% |
| ! | CTTTTACCATACATGTGTGT+TGG | + | chr8.3:69994307-69994326 | MS.gene051092:intron | 35.0% |
| ! | GTCCTACTTCATAAGCTTTT+CGG | - | chr8.3:69996139-69996158 | None:intergenic | 35.0% |
| ! | GTGGATTTTCAATTGCATAG+CGG | + | chr8.3:69994723-69994742 | MS.gene051092:intron | 35.0% |
| !! | ACCTTTTAGGTGAATAAGTG+AGG | + | chr8.3:69995702-69995721 | MS.gene051092:intron | 35.0% |
| !! | ATCTCTTTGGCCTTTTCAAA+AGG | - | chr8.3:69994805-69994824 | None:intergenic | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | + | chr8.3:69994542-69994561 | MS.gene051092:CDS | 35.0% |
| !! | TCTCTTTGGCCTTTTCAAAA+GGG | - | chr8.3:69994804-69994823 | None:intergenic | 35.0% |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | - | chr8.3:69996164-69996183 | None:intergenic | 35.0% |
| AAACCAATCACATCTCATGC+TGG | + | chr8.3:69994676-69994695 | MS.gene051092:intron | 40.0% | |
| AACTGCGAACCTTTATGTTG+TGG | + | chr8.3:69996319-69996338 | MS.gene051092:intron | 40.0% | |
| ATATGGACACGAACACGATA+CGG | + | chr8.3:69996528-69996547 | MS.gene051092:intron | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | - | chr8.3:69994552-69994571 | None:intergenic | 40.0% | |
| GACCGAAAAGCTTATGAAGT+AGG | + | chr8.3:69996134-69996153 | MS.gene051092:CDS | 40.0% | |
| GCACTTAACATTCCTGATGA+TGG | + | chr8.3:69994537-69994556 | MS.gene051092:CDS | 40.0% | |
| GCAGTTTGCGAAAAAAAGTC+AGG | - | chr8.3:69994652-69994671 | None:intergenic | 40.0% | |
| GCCACTTCTAAACATCTAAG+AGG | + | chr8.3:69994952-69994971 | MS.gene051092:intron | 40.0% | |
| GCCTCACTTATTCACCTAAA+AGG | - | chr8.3:69995706-69995725 | None:intergenic | 40.0% | |
| TAAGAGGTTGGACCTTAAGT+CGG | + | chr8.3:69994026-69994045 | MS.gene051092:intron | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | - | chr8.3:69996664-69996683 | None:intergenic | 40.0% | |
| TCTCGTGAGCTTAACTAAGT+TGG | - | chr8.3:69995631-69995650 | None:intergenic | 40.0% | |
| TGATAACTTGAGGTCCAAGT+TGG | + | chr8.3:69994210-69994229 | MS.gene051092:intron | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | + | chr8.3:69996063-69996082 | MS.gene051092:intron | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | + | chr8.3:69997037-69997056 | MS.gene051092:CDS | 40.0% | |
| TTTCCACTAGAGATCGTACT+CGG | + | chr8.3:69995383-69995402 | MS.gene051092:intron | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | - | chr8.3:69996134-69996153 | None:intergenic | 40.0% |
| ! | CGCATTTTGCCACAACATAA+AGG | - | chr8.3:69996331-69996350 | None:intergenic | 40.0% |
| !! | AAAAATGGGATAGTGGGTAG+TGG | + | chr8.3:69994704-69994723 | MS.gene051092:intron | 40.0% |
| AAGAAGCTCTTCTAGATCCC+AGG | + | chr8.3:69996945-69996964 | MS.gene051092:CDS | 45.0% | |
| GAGTTGCCAACACACATGTA+TGG | - | chr8.3:69994316-69994335 | None:intergenic | 45.0% | |
| GGATCTAGAAGAGCTTCTTC+AGG | - | chr8.3:69996944-69996963 | None:intergenic | 45.0% | |
| TAGTAATTCGGGGTTCAGTC+AGG | + | chr8.3:69995333-69995352 | MS.gene051092:intron | 45.0% | |
| TGAGAGTCTCTTGTTCTCGT+GGG | - | chr8.3:69993714-69993733 | None:intergenic | 45.0% | |
| TTCCACTAGAGATCGTACTC+GGG | + | chr8.3:69995384-69995403 | MS.gene051092:intron | 45.0% | |
| TTGAGAGTCTCTTGTTCTCG+TGG | - | chr8.3:69993715-69993734 | None:intergenic | 45.0% | |
| TTGTTCTCGTGGGTAAACAC+TGG | - | chr8.3:69993704-69993723 | None:intergenic | 45.0% | |
| ! | AGGTGAATAAGTGAGGCGTT+CGG | + | chr8.3:69995709-69995728 | MS.gene051092:intron | 45.0% |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | - | chr8.3:69994533-69994552 | None:intergenic | 45.0% |
| ! | TATGATAACACCCTTTGGGG+TGG | + | chr8.3:69996905-69996924 | MS.gene051092:CDS | 45.0% |
| !! | ACCCACTATCCCATTTTTGC+CGG | - | chr8.3:69994702-69994721 | None:intergenic | 45.0% |
| !! | ATTATTAACTAAAAAAAATT+AGG | + | chr8.3:69993983-69994002 | MS.gene051092:intron | 5.0% |
| !! | TTATTATTATTACTTATATT+AGG | + | chr8.3:69994397-69994416 | MS.gene051092:intron | 5.0% |
| !!! | TAATTTTTTTTAGTTAATAA+TGG | - | chr8.3:69993984-69994003 | None:intergenic | 5.0% |
| ACACGACAAGTGTCTGACAC+CGG | + | chr8.3:69996626-69996645 | MS.gene051092:intron | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | - | chr8.3:69996919-69996938 | None:intergenic | 50.0% | |
| CAATCACATCTCATGCTGGC+CGG | + | chr8.3:69994680-69994699 | MS.gene051092:intron | 50.0% | |
| GCAGAGTGGGAATTTGACCA+AGG | + | chr8.3:69993558-69993577 | MS.gene051092:CDS | 50.0% | |
| GCCGGCAAAAATGGGATAGT+GGG | + | chr8.3:69994698-69994717 | MS.gene051092:intron | 50.0% | |
| TCATGCTGGCCGGCAAAAAT+GGG | + | chr8.3:69994690-69994709 | MS.gene051092:intron | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | - | chr8.3:69996648-69996667 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | - | chr8.3:69996918-69996937 | None:intergenic | 50.0% | |
| TGCATAATGTATGCAGGGGC+CGG | - | chr8.3:69995599-69995618 | None:intergenic | 50.0% | |
| ! | AAGGTTTAAGGTTCGAGCCC+CGG | + | chr8.3:69995577-69995596 | MS.gene051092:intron | 50.0% |
| ! | GGTGAATAAGTGAGGCGTTC+GGG | + | chr8.3:69995710-69995729 | MS.gene051092:intron | 50.0% |
| ! | GTACATAGGGTAGCTTGCAG+TGG | - | chr8.3:69993752-69993771 | None:intergenic | 50.0% |
| ! | GTGAATAAGTGAGGCGTTCG+GGG | + | chr8.3:69995711-69995730 | MS.gene051092:intron | 50.0% |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | + | chr8.3:69996918-69996937 | MS.gene051092:CDS | 50.0% |
| ACCGGAACACGTCTTATCCG+AGG | + | chr8.3:69996644-69996663 | MS.gene051092:intron | 55.0% | |
| AGCCCGAGTACGATCTCTAG+TGG | - | chr8.3:69995389-69995408 | None:intergenic | 55.0% | |
| CATAATGTATGCAGGGGCCG+GGG | - | chr8.3:69995597-69995616 | None:intergenic | 55.0% | |
| CCATTAGCTGACCCGCATCA+GGG | - | chr8.3:69994440-69994459 | None:intergenic | 55.0% | |
| CCTGATGCGGGTCAGCTAAT+GGG | + | chr8.3:69994438-69994457 | MS.gene051092:CDS | 55.0% | |
| CGGCCAGCATGAGATGTGAT+TGG | - | chr8.3:69994682-69994701 | None:intergenic | 55.0% | |
| CTCATGCTGGCCGGCAAAAA+TGG | + | chr8.3:69994689-69994708 | MS.gene051092:intron | 55.0% | |
| GCATAATGTATGCAGGGGCC+GGG | - | chr8.3:69995598-69995617 | None:intergenic | 55.0% | |
| GGCCGGCAAAAATGGGATAG+TGG | + | chr8.3:69994697-69994716 | MS.gene051092:intron | 55.0% | |
| ! | TGAAATGCGGGGCCGACTTA+AGG | - | chr8.3:69994041-69994060 | None:intergenic | 55.0% |
| CCCATTAGCTGACCCGCATC+AGG | - | chr8.3:69994441-69994460 | None:intergenic | 60.0% | |
| CCCTGATGCGGGTCAGCTAA+TGG | + | chr8.3:69994437-69994456 | MS.gene051092:CDS | 60.0% | |
| TGTCGTGTCCGACGTCGACA+CGG | - | chr8.3:69996614-69996633 | None:intergenic | 60.0% | |
| !! | ATGGGCACTGACCCTGATGC+GGG | + | chr8.3:69994426-69994445 | MS.gene051092:CDS | 60.0% |
| !! | CATGGGCACTGACCCTGATG+CGG | + | chr8.3:69994425-69994444 | MS.gene051092:CDS | 60.0% |
| TGTCCGACGTCGACACGGCA+CGG | - | chr8.3:69996609-69996628 | None:intergenic | 65.0% | |
| ! | TGTCCGTGCCGTGTCGACGT+CGG | + | chr8.3:69996603-69996622 | MS.gene051092:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 69993523 | 69997087 | 69993523 | ID=MS.gene051092 |
| chr8.3 | mRNA | 69993523 | 69997087 | 69993523 | ID=MS.gene051092.t1;Parent=MS.gene051092 |
| chr8.3 | exon | 69993523 | 69993579 | 69993523 | ID=MS.gene051092.t1.exon1;Parent=MS.gene051092.t1 |
| chr8.3 | CDS | 69993523 | 69993579 | 69993523 | ID=cds.MS.gene051092.t1;Parent=MS.gene051092.t1 |
| chr8.3 | exon | 69993688 | 69993767 | 69993688 | ID=MS.gene051092.t1.exon2;Parent=MS.gene051092.t1 |
| chr8.3 | CDS | 69993688 | 69993767 | 69993688 | ID=cds.MS.gene051092.t1;Parent=MS.gene051092.t1 |
| chr8.3 | exon | 69994419 | 69994563 | 69994419 | ID=MS.gene051092.t1.exon3;Parent=MS.gene051092.t1 |
| chr8.3 | CDS | 69994419 | 69994563 | 69994419 | ID=cds.MS.gene051092.t1;Parent=MS.gene051092.t1 |
| chr8.3 | exon | 69996116 | 69996247 | 69996116 | ID=MS.gene051092.t1.exon4;Parent=MS.gene051092.t1 |
| chr8.3 | CDS | 69996116 | 69996247 | 69996116 | ID=cds.MS.gene051092.t1;Parent=MS.gene051092.t1 |
| chr8.3 | exon | 69996794 | 69997087 | 69996794 | ID=MS.gene051092.t1.exon5;Parent=MS.gene051092.t1 |
| chr8.3 | CDS | 69996794 | 69997087 | 69996794 | ID=cds.MS.gene051092.t1;Parent=MS.gene051092.t1 |
| Gene Sequence |
| Protein sequence |
