Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30858.t1 | XP_013456886.1 | 59.3 | 81 | 6 | 1 | 206 | 259 | 322 | 402 | 2.00E-13 | 86.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30858.t1 | A0A072UPI8 | 59.3 | 81 | 6 | 1 | 206 | 259 | 323 | 403 | 1.4e-13 | 86.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053677 | MS.gene30858 | 0.80899 | 2.36E-50 | -1.69E-46 |
| MS.gene056057 | MS.gene30858 | 0.809626 | 1.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30858.t1 | MTR_4g086835 | 59.259 | 81 | 6 | 1 | 206 | 259 | 322 | 402 | 7.08e-21 | 92.0 |
| MS.gene30858.t1 | MTR_4g086835 | 59.259 | 81 | 6 | 1 | 206 | 259 | 323 | 403 | 7.19e-21 | 92.0 |
| MS.gene30858.t1 | MTR_8g064930 | 94.286 | 35 | 2 | 0 | 173 | 207 | 6 | 40 | 1.40e-16 | 72.4 |
| MS.gene30858.t1 | MTR_7g099030 | 55.682 | 88 | 9 | 1 | 41 | 98 | 584 | 671 | 5.09e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30858.t1 | AT2G20320 | 41.573 | 89 | 22 | 1 | 42 | 100 | 783 | 871 | 1.55e-13 | 71.2 |
| MS.gene30858.t1 | AT2G20320 | 41.573 | 89 | 22 | 1 | 42 | 100 | 783 | 871 | 1.55e-13 | 71.2 |
Find 45 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAGTTCTTGGAGGTTTA+TGG | 0.186325 | 1.1:-49728139 | MS.gene30858:CDS |
| GTCAAAATTTACATATTTCT+TGG | 0.239711 | 1.1:+49728001 | None:intergenic |
| GACCTGGATTCTTTGGTAAT+TGG | 0.261509 | 1.1:-49727891 | MS.gene30858:CDS |
| TTGATTGGACCTGGATTCTT+TGG | 0.261678 | 1.1:-49727898 | MS.gene30858:CDS |
| GCGAAACGTCACCGTTGTTC+AGG | 0.296020 | 1.1:-49728494 | MS.gene30858:intron |
| CTGGAATTTGAAGACATATA+TGG | 0.318108 | 1.1:-49729184 | MS.gene30858:CDS |
| GATCACTCTGTTGTAGTTCT+TGG | 0.319431 | 1.1:-49728149 | MS.gene30858:CDS |
| GAAAGGGTTGGCTTTCTCTA+AGG | 0.326027 | 1.1:-49731060 | MS.gene30858:intron |
| AAGCCTTTGCATTATCAGTA+TGG | 0.353852 | 1.1:-49729974 | MS.gene30858:CDS |
| CACTCTGTTGTAGTTCTTGG+AGG | 0.391490 | 1.1:-49728146 | MS.gene30858:CDS |
| GTATTCTAGGAGAATTTGAT+TGG | 0.392675 | 1.1:-49727913 | MS.gene30858:intron |
| TTTCCACCATCTCAACATAT+TGG | 0.407520 | 1.1:-49729237 | MS.gene30858:CDS |
| TATGAGTGGGTTGTGTTATG+AGG | 0.422892 | 1.1:-49729559 | MS.gene30858:CDS |
| AAGGGCCACACCATACTCTT+TGG | 0.424346 | 1.1:+49728546 | None:intergenic |
| AGTAAACTCTGCCACTGAAA+TGG | 0.431444 | 1.1:+49729817 | None:intergenic |
| ACAACGGTGACGTTTCGCTT+CGG | 0.463663 | 1.1:+49728499 | None:intergenic |
| ACCTGATGAAATCCTCACTT+TGG | 0.468216 | 1.1:-49731111 | MS.gene30858:CDS |
| TCCAAAGTGAGGATTTCATC+AGG | 0.470978 | 1.1:+49731110 | None:intergenic |
| TGAGGGCAACTTACATATCC+AGG | 0.488191 | 1.1:-49729541 | MS.gene30858:intron |
| TTCTCAGTAGCTGCCAACTT+CGG | 0.494557 | 1.1:+49729996 | None:intergenic |
| TAACTTCGGTAAAATTTCAA+AGG | 0.510604 | 1.1:-49729683 | MS.gene30858:intron |
| TAGGAGAATTTGATTGGACC+TGG | 0.516028 | 1.1:-49727907 | MS.gene30858:CDS |
| GACAATTTCAGGATATGTTG+AGG | 0.519087 | 1.1:-49731168 | MS.gene30858:intron |
| ATCAGTATGGACAACATCAA+TGG | 0.523506 | 1.1:-49729961 | MS.gene30858:intron |
| GAGTCATTGTATTGTTCTTG+AGG | 0.529959 | 1.1:+49728113 | None:intergenic |
| GCAACATTACGTAGTCGTCA+AGG | 0.536559 | 1.1:+49728527 | None:intergenic |
| GTGGCAGAGTTTACTACTCC+CGG | 0.540985 | 1.1:-49729809 | MS.gene30858:intron |
| CTCTTCCAAAGGTGATAGCA+TGG | 0.542728 | 1.1:-49728093 | MS.gene30858:CDS |
| GAACTCTCCGCGTATGAAGT+CGG | 0.562568 | 1.1:+49728189 | None:intergenic |
| TGATCAGTACTACTTGCAGC+TGG | 0.564167 | 1.1:+49728167 | None:intergenic |
| ATGAGTGGGTTGTGTTATGA+GGG | 0.574980 | 1.1:-49729558 | MS.gene30858:CDS |
| TACCAATTACCAAAGAATCC+AGG | 0.575376 | 1.1:+49727889 | None:intergenic |
| TCATCACCAATATGTTGAGA+TGG | 0.581111 | 1.1:+49729231 | None:intergenic |
| TCACCAATATGTTGAGATGG+TGG | 0.585087 | 1.1:+49729234 | None:intergenic |
| TAATTTGCTAGGACAAGGCA+AGG | 0.597697 | 1.1:-49728585 | MS.gene30858:intron |
| AGGTTGCGAGATTATATGAG+TGG | 0.605845 | 1.1:-49729573 | MS.gene30858:CDS |
| CAACATTACGTAGTCGTCAA+GGG | 0.608285 | 1.1:+49728528 | None:intergenic |
| CTTTGGACAATGCTGATCGT+CGG | 0.610336 | 1.1:-49731094 | MS.gene30858:CDS |
| TGTTGATTCGTCCATTTCAG+TGG | 0.613839 | 1.1:-49729828 | MS.gene30858:CDS |
| TACTCTTTGGCAAAACACGT+TGG | 0.617335 | 1.1:+49728559 | None:intergenic |
| CAATACAATGACTCTTCCAA+AGG | 0.638042 | 1.1:-49728104 | MS.gene30858:CDS |
| TGTCCATACTGATAATGCAA+AGG | 0.651820 | 1.1:+49729971 | None:intergenic |
| AGAAATACCGACTTCATACG+CGG | 0.668200 | 1.1:-49728196 | MS.gene30858:CDS |
| GATCAGCATTGTCCAAAGTG+AGG | 0.674747 | 1.1:+49731099 | None:intergenic |
| GGTTGCGAGATTATATGAGT+GGG | 0.681349 | 1.1:-49729572 | MS.gene30858:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAGTTATAATGTA+AGG | + | chr1.1:49730948-49730967 | None:intergenic | 15.0% |
| !! | AATTTAATTGTTTCAAATTC+TGG | - | chr1.1:49728932-49728951 | MS.gene30858:intron | 15.0% |
| !! | ATGTGAAAATATACAAAAAT+TGG | + | chr1.1:49730105-49730124 | None:intergenic | 15.0% |
| !! | TATATATTAAAACTTAAGTG+AGG | + | chr1.1:49729138-49729157 | None:intergenic | 15.0% |
| !!! | AATAAAAGAAGACTATTTTT+AGG | + | chr1.1:49730066-49730085 | None:intergenic | 15.0% |
| !!! | TTTTTAAAGAATAAGTTACT+TGG | - | chr1.1:49729054-49729073 | MS.gene30858:intron | 15.0% |
| !! | AAAAATGATGTAAAGAAATC+AGG | + | chr1.1:49729796-49729815 | None:intergenic | 20.0% |
| !! | AAGGAAAATATTGATAAGTA+AGG | - | chr1.1:49731092-49731111 | MS.gene30858:CDS | 20.0% |
| !! | AATCAAACATTACAAATCAA+AGG | + | chr1.1:49731458-49731477 | None:intergenic | 20.0% |
| !! | AGAAATAAAATATGAAAGCT+TGG | + | chr1.1:49728383-49728402 | None:intergenic | 20.0% |
| !! | ATCAAACATTACAAATCAAA+GGG | + | chr1.1:49731457-49731476 | None:intergenic | 20.0% |
| !! | ATGAAAAATCTGAGAATTAT+AGG | - | chr1.1:49731333-49731352 | MS.gene30858:intron | 20.0% |
| !! | ATTATATCTGGAAATTCAAA+CGG | + | chr1.1:49728036-49728055 | None:intergenic | 20.0% |
| !! | CATTACATTATATTCATGTA+AGG | - | chr1.1:49731422-49731441 | MS.gene30858:intron | 20.0% |
| !! | GGTTTAAATTTATCAAAAGT+TGG | - | chr1.1:49730643-49730662 | MS.gene30858:intron | 20.0% |
| !! | GTCAAAATTTACATATTTCT+TGG | + | chr1.1:49731393-49731412 | None:intergenic | 20.0% |
| !! | TTTCTCTCATATATAGTTAT+AGG | + | chr1.1:49728414-49728433 | None:intergenic | 20.0% |
| !!! | AATCTGTAATTTTGATTCAA+GGG | - | chr1.1:49728497-49728516 | MS.gene30858:CDS | 20.0% |
| !!! | AATGATTGATTTTCTAACTT+CGG | - | chr1.1:49729694-49729713 | MS.gene30858:CDS | 20.0% |
| !!! | ATGAAATATATGGATTACTT+AGG | + | chr1.1:49730503-49730522 | None:intergenic | 20.0% |
| !!! | GTTTATCTTTTGTATTTTCA+AGG | - | chr1.1:49731002-49731021 | MS.gene30858:intron | 20.0% |
| !!! | TAATCTGTAATTTTGATTCA+AGG | - | chr1.1:49728496-49728515 | MS.gene30858:CDS | 20.0% |
| !!! | TTTTGATAAATTTAAACCGA+TGG | + | chr1.1:49730641-49730660 | None:intergenic | 20.0% |
| ! | AAAAATAATAGAAGCTAACC+TGG | + | chr1.1:49729871-49729890 | None:intergenic | 25.0% |
| ! | AAACCTGATGTTAGATAAAA+AGG | + | chr1.1:49730288-49730307 | None:intergenic | 25.0% |
| ! | AAAGCTATGAAACTGTTATA+AGG | + | chr1.1:49730669-49730688 | None:intergenic | 25.0% |
| ! | AATAAGAGAAACTGTGAAAT+TGG | + | chr1.1:49731069-49731088 | None:intergenic | 25.0% |
| ! | ACTATGATGTACTAATTAGT+TGG | + | chr1.1:49728604-49728623 | None:intergenic | 25.0% |
| ! | AGTATGAGAAGAAAATGATA+TGG | - | chr1.1:49728575-49728594 | MS.gene30858:CDS | 25.0% |
| ! | ATAAAAATTCATGTTCAGTG+AGG | - | chr1.1:49729155-49729174 | MS.gene30858:intron | 25.0% |
| ! | ATGTTAGATAAAAAGGATTG+AGG | + | chr1.1:49730281-49730300 | None:intergenic | 25.0% |
| ! | CACCATTAAAATCATTAAAG+AGG | + | chr1.1:49729942-49729961 | None:intergenic | 25.0% |
| ! | GATATTTATGAGTTTAGATG+TGG | - | chr1.1:49729732-49729751 | MS.gene30858:intron | 25.0% |
| ! | GTAATGTTTGATTGTATTCT+AGG | - | chr1.1:49731465-49731484 | MS.gene30858:intron | 25.0% |
| ! | TAAAGAAATCAGGAAAATGA+AGG | + | chr1.1:49729786-49729805 | None:intergenic | 25.0% |
| ! | TAACTTCGGTAAAATTTCAA+AGG | - | chr1.1:49729708-49729727 | MS.gene30858:CDS | 25.0% |
| ! | TTAGCAGTGAAAATATAGTT+TGG | + | chr1.1:49730758-49730777 | None:intergenic | 25.0% |
| ! | TTTATCTAACATCAGGTTTA+TGG | - | chr1.1:49730289-49730308 | MS.gene30858:intron | 25.0% |
| !! | AATCCTTTTTATCTAACATC+AGG | - | chr1.1:49730282-49730301 | MS.gene30858:intron | 25.0% |
| !! | ATAACTTGTAAATCTTCAAG+AGG | + | chr1.1:49729215-49729234 | None:intergenic | 25.0% |
| !! | ATGAATTTTACATCATGCTT+TGG | - | chr1.1:49731124-49731143 | MS.gene30858:CDS | 25.0% |
| !! | GTAAAGAAAGCACATATTTA+TGG | + | chr1.1:49729345-49729364 | None:intergenic | 25.0% |
| !! | GTACTTTATTTCATGTTCTT+GGG | - | chr1.1:49729108-49729127 | MS.gene30858:intron | 25.0% |
| !! | TAACTTGTAAATCTTCAAGA+GGG | + | chr1.1:49729214-49729233 | None:intergenic | 25.0% |
| !! | TGCCTCTTTAATGATTTTAA+TGG | - | chr1.1:49729937-49729956 | MS.gene30858:intron | 25.0% |
| !! | TGTACTTTATTTCATGTTCT+TGG | - | chr1.1:49729107-49729126 | MS.gene30858:intron | 25.0% |
| !!! | AAGTTACTTGGTTTTCATTT+TGG | - | chr1.1:49729066-49729085 | MS.gene30858:intron | 25.0% |
| !!! | ACATTATTTGCTAATTTGCT+AGG | - | chr1.1:49730795-49730814 | MS.gene30858:intron | 25.0% |
| !!! | AGAAAATCAATCATTTTTGC+AGG | + | chr1.1:49729689-49729708 | None:intergenic | 25.0% |
| !!! | ATGTAAATTTTGACGTCAAA+TGG | - | chr1.1:49731399-49731418 | MS.gene30858:intron | 25.0% |
| !!! | ATTTTCTTCTCATACTGATT+TGG | + | chr1.1:49728571-49728590 | None:intergenic | 25.0% |
| !!! | GGTTAGCTTCTATTATTTTT+TGG | - | chr1.1:49729871-49729890 | MS.gene30858:intron | 25.0% |
| !!! | TCATTTGTTGATTCAAATTC+TGG | - | chr1.1:49728882-49728901 | MS.gene30858:intron | 25.0% |
| !!! | TTTCTTTACATCATTTTTGC+AGG | - | chr1.1:49729798-49729817 | MS.gene30858:intron | 25.0% |
| !!! | TTTCTTTTTAGTATGCTCTA+GGG | - | chr1.1:49730560-49730579 | MS.gene30858:intron | 25.0% |
| AAGAACCAGCATATTGTAAA+CGG | + | chr1.1:49730006-49730025 | None:intergenic | 30.0% | |
| AATCCATATATTTCATCCAG+TGG | - | chr1.1:49730507-49730526 | MS.gene30858:intron | 30.0% | |
| ACACGCATATATAAACAAAG+TGG | + | chr1.1:49730464-49730483 | None:intergenic | 30.0% | |
| ACAGATTATGATGCTAAGTA+GGG | + | chr1.1:49728484-49728503 | None:intergenic | 30.0% | |
| ACGCTGTTAAAATTGTTGAA+GGG | + | chr1.1:49729000-49729019 | None:intergenic | 30.0% | |
| ATGAGCAATGAGTGATAAAT+TGG | + | chr1.1:49730722-49730741 | None:intergenic | 30.0% | |
| ATGTGTGTCATATATGTGTT+TGG | - | chr1.1:49730417-49730436 | MS.gene30858:intron | 30.0% | |
| CTGGAATTTGAAGACATATA+TGG | - | chr1.1:49730207-49730226 | MS.gene30858:intron | 30.0% | |
| CTTAAGCGCTTAATTATATC+TGG | + | chr1.1:49728048-49728067 | None:intergenic | 30.0% | |
| GTTTCTTTGTAGATGATCTT+AGG | - | chr1.1:49729912-49729931 | MS.gene30858:intron | 30.0% | |
| TACAGATTATGATGCTAAGT+AGG | + | chr1.1:49728485-49728504 | None:intergenic | 30.0% | |
| TGAAGCAAAGTTACAGAAAA+AGG | + | chr1.1:49728141-49728160 | None:intergenic | 30.0% | |
| TGATGTACTAATTATGCATC+AGG | - | chr1.1:49727906-49727925 | MS.gene30858:CDS | 30.0% | |
| TGTGTGAATTTGACAATTTC+AGG | - | chr1.1:49728212-49728231 | MS.gene30858:intron | 30.0% | |
| ! | AAGTCTACCAATATCTTTTC+AGG | - | chr1.1:49729658-49729677 | MS.gene30858:intron | 30.0% |
| ! | GTATTCTAGGAGAATTTGAT+TGG | - | chr1.1:49731478-49731497 | MS.gene30858:intron | 30.0% |
| ! | TGACATTCAATTGATTCTCT+TGG | - | chr1.1:49729245-49729264 | MS.gene30858:CDS | 30.0% |
| !! | ATTTTAGTGACTGTCAACTA+TGG | - | chr1.1:49728745-49728764 | MS.gene30858:intron | 30.0% |
| !! | GATTAGTTCTGATTGCTTTA+GGG | - | chr1.1:49729471-49729490 | MS.gene30858:intron | 30.0% |
| !! | GTTTCTTTTTAGTATGCTCT+AGG | - | chr1.1:49730559-49730578 | MS.gene30858:intron | 30.0% |
| !! | TCTGGTTTGAGATTTTTCTT+GGG | - | chr1.1:49729627-49729646 | MS.gene30858:intron | 30.0% |
| !! | TGATATTGCTTTTGTTGGAA+AGG | - | chr1.1:49730180-49730199 | MS.gene30858:intron | 30.0% |
| !! | TTCAGGTTGAAAAGAAGAAT+GGG | - | chr1.1:49730914-49730933 | MS.gene30858:intron | 30.0% |
| !!! | ATGGTCATTTTTTGTTGATG+TGG | - | chr1.1:49729449-49729468 | MS.gene30858:intron | 30.0% |
| AAGCCTTTGCATTATCAGTA+TGG | - | chr1.1:49729417-49729436 | MS.gene30858:intron | 35.0% | |
| ACACACATCAAAGCAATTAC+AGG | + | chr1.1:49728197-49728216 | None:intergenic | 35.0% | |
| ACACTTTGTATAGACACCAT+CGG | - | chr1.1:49730622-49730641 | MS.gene30858:intron | 35.0% | |
| ACTGAAACTTCGATAAATGC+AGG | + | chr1.1:49728529-49728548 | None:intergenic | 35.0% | |
| AGAACATGAGAGGAACAATA+TGG | - | chr1.1:49728712-49728731 | MS.gene30858:intron | 35.0% | |
| ATATTGTAAACGGAATGAGC+TGG | + | chr1.1:49729996-49730015 | None:intergenic | 35.0% | |
| ATCAGTATGGACAACATCAA+TGG | - | chr1.1:49729430-49729449 | MS.gene30858:intron | 35.0% | |
| CAAGAAAAATCTCAAACCAG+AGG | + | chr1.1:49729628-49729647 | None:intergenic | 35.0% | |
| CAATACAATGACTCTTCCAA+AGG | - | chr1.1:49731287-49731306 | MS.gene30858:intron | 35.0% | |
| CACAGTTTCTCTTATTGTGA+AGG | - | chr1.1:49731073-49731092 | MS.gene30858:CDS | 35.0% | |
| CACGCTGTTAAAATTGTTGA+AGG | + | chr1.1:49729001-49729020 | None:intergenic | 35.0% | |
| CGCTGTTAAAATTGTTGAAG+GGG | + | chr1.1:49728999-49729018 | None:intergenic | 35.0% | |
| CTCTACTCTACTTGGTAAAA+AGG | - | chr1.1:49729367-49729386 | MS.gene30858:intron | 35.0% | |
| CTTTACAACTCTACTCTACT+TGG | - | chr1.1:49729359-49729378 | MS.gene30858:intron | 35.0% | |
| GAACATGAGAGGAACAATAT+GGG | - | chr1.1:49728713-49728732 | MS.gene30858:intron | 35.0% | |
| GACAATTTCAGGATATGTTG+AGG | - | chr1.1:49728223-49728242 | MS.gene30858:intron | 35.0% | |
| GACTTAAGAATTACCTCAGT+TGG | + | chr1.1:49729302-49729321 | None:intergenic | 35.0% | |
| GAGTCATTGTATTGTTCTTG+AGG | + | chr1.1:49731281-49731300 | None:intergenic | 35.0% | |
| GATAAATTGGATTACTGCCT+TGG | + | chr1.1:49730709-49730728 | None:intergenic | 35.0% | |
| GGCAAAACCTGAAAAGATAT+TGG | + | chr1.1:49729668-49729687 | None:intergenic | 35.0% | |
| GGTTGTAAAATGTCTTGCTT+TGG | - | chr1.1:49729753-49729772 | MS.gene30858:intron | 35.0% | |
| GTGATGAGAGGAAAATAACT+CGG | - | chr1.1:49730980-49730999 | MS.gene30858:intron | 35.0% | |
| GTTCTTCCAAAAAGAAAGTC+TGG | + | chr1.1:49728119-49728138 | None:intergenic | 35.0% | |
| TAAAAAGGTCAATCCGAAGT+TGG | - | chr1.1:49729382-49729401 | MS.gene30858:intron | 35.0% | |
| TACCAATTACCAAAGAATCC+AGG | + | chr1.1:49731505-49731524 | None:intergenic | 35.0% | |
| TATTTCATCCAGTGGACATT+TGG | - | chr1.1:49730515-49730534 | MS.gene30858:intron | 35.0% | |
| TCATCACCAATATGTTGAGA+TGG | + | chr1.1:49730163-49730182 | None:intergenic | 35.0% | |
| TCATTCCGTTTACAATATGC+TGG | - | chr1.1:49729998-49730017 | MS.gene30858:CDS | 35.0% | |
| TCCAAAAAGAAAGTCTGGAA+CGG | + | chr1.1:49728114-49728133 | None:intergenic | 35.0% | |
| TCCTCTCATCACAATGATAT+TGG | + | chr1.1:49730972-49730991 | None:intergenic | 35.0% | |
| TGTCCACTGGATGAAATATA+TGG | + | chr1.1:49730513-49730532 | None:intergenic | 35.0% | |
| TGTTCCTCTCATATGTTGAA+CGG | + | chr1.1:49728651-49728670 | None:intergenic | 35.0% | |
| TTGTAGTTCTTGGAGGTTTA+TGG | - | chr1.1:49731252-49731271 | MS.gene30858:intron | 35.0% | |
| TTTCCACCATCTCAACATAT+TGG | - | chr1.1:49730154-49730173 | MS.gene30858:intron | 35.0% | |
| ! | CAAAGTGTTTACCTATAAGC+AGG | + | chr1.1:49730610-49730629 | None:intergenic | 35.0% |
| ! | CTTCTTTTCAACCTGAACAA+CGG | + | chr1.1:49730911-49730930 | None:intergenic | 35.0% |
| ! | GCAATTTTTGACACAATGCA+GGG | - | chr1.1:49729508-49729527 | MS.gene30858:intron | 35.0% |
| ! | GGTTGAATTTGAAATCGCAT+TGG | - | chr1.1:49730310-49730329 | MS.gene30858:intron | 35.0% |
| ! | TGTCCATACTGATAATGCAA+AGG | + | chr1.1:49729423-49729442 | None:intergenic | 35.0% |
| !! | CTCTGGTTTGAGATTTTTCT+TGG | - | chr1.1:49729626-49729645 | MS.gene30858:intron | 35.0% |
| !! | CTGGTTTGAGATTTTTCTTG+GGG | - | chr1.1:49729628-49729647 | MS.gene30858:intron | 35.0% |
| !! | CTTTAGGGATGCTTTCATTT+TGG | - | chr1.1:49729486-49729505 | MS.gene30858:intron | 35.0% |
| !! | GGATTAGTTCTGATTGCTTT+AGG | - | chr1.1:49729470-49729489 | MS.gene30858:intron | 35.0% |
| !! | GGTGATGATATTGCTTTTGT+TGG | - | chr1.1:49730175-49730194 | MS.gene30858:intron | 35.0% |
| !! | GTTCAGGTTGAAAAGAAGAA+TGG | - | chr1.1:49730913-49730932 | MS.gene30858:intron | 35.0% |
| !! | TTTGCTAATTTGCTAGGACA+AGG | - | chr1.1:49730801-49730820 | MS.gene30858:intron | 35.0% |
| !!! | TTTTTTGCGTAGAACATGAG+AGG | - | chr1.1:49728702-49728721 | MS.gene30858:intron | 35.0% |
| AAAAGGATTGAGGTTCTCAG+TGG | + | chr1.1:49730271-49730290 | None:intergenic | 40.0% | |
| AACTGTCAGTTGTGTTTCAG+AGG | + | chr1.1:49728786-49728805 | None:intergenic | 40.0% | |
| AATTGCAACCAAATGTCCAC+TGG | + | chr1.1:49730526-49730545 | None:intergenic | 40.0% | |
| ACCTGATGAAATCCTCACTT+TGG | - | chr1.1:49728280-49728299 | MS.gene30858:intron | 40.0% | |
| AGGTTGCGAGATTATATGAG+TGG | - | chr1.1:49729818-49729837 | MS.gene30858:CDS | 40.0% | |
| AGTAAACTCTGCCACTGAAA+TGG | + | chr1.1:49729577-49729596 | None:intergenic | 40.0% | |
| ATACTTTGAGCACAAGGTTG+TGG | - | chr1.1:49728958-49728977 | MS.gene30858:intron | 40.0% | |
| CAACATTACGTAGTCGTCAA+GGG | + | chr1.1:49730866-49730885 | None:intergenic | 40.0% | |
| CATTCCGTTCAACATATGAG+AGG | - | chr1.1:49728644-49728663 | MS.gene30858:intron | 40.0% | |
| CCTGAAAAGAAAACAGACAC+GGG | - | chr1.1:49728162-49728181 | MS.gene30858:CDS | 40.0% | |
| CTCTCATATGTTGAACGGAA+TGG | + | chr1.1:49728646-49728665 | None:intergenic | 40.0% | |
| CTGACAGTTTCGACACAATT+AGG | - | chr1.1:49728797-49728816 | MS.gene30858:intron | 40.0% | |
| CTTGTAAATCTTCAAGAGGG+TGG | + | chr1.1:49729211-49729230 | None:intergenic | 40.0% | |
| GATCACTCTGTTGTAGTTCT+TGG | - | chr1.1:49731242-49731261 | MS.gene30858:intron | 40.0% | |
| GCCAATATCATTGTGATGAG+AGG | - | chr1.1:49730968-49730987 | MS.gene30858:intron | 40.0% | |
| GCCTGAAAAGAAAACAGACA+CGG | - | chr1.1:49728161-49728180 | MS.gene30858:CDS | 40.0% | |
| GCTAAGTAGGGATAGAGATT+GGG | + | chr1.1:49728472-49728491 | None:intergenic | 40.0% | |
| GGTTGCGAGATTATATGAGT+GGG | - | chr1.1:49729819-49729838 | MS.gene30858:CDS | 40.0% | |
| GTCGGTGTAAAAAGCTGAAA+GGG | - | chr1.1:49728315-49728334 | MS.gene30858:intron | 40.0% | |
| GTGTAAAAAGCTGAAAGGGT+TGG | - | chr1.1:49728319-49728338 | MS.gene30858:intron | 40.0% | |
| TACTCTTTGGCAAAACACGT+TGG | + | chr1.1:49730835-49730854 | None:intergenic | 40.0% | |
| TAGGAGAATTTGATTGGACC+TGG | - | chr1.1:49731484-49731503 | MS.gene30858:intron | 40.0% | |
| TAGTTTCATCGCCTGCTTAT+AGG | - | chr1.1:49730596-49730615 | MS.gene30858:intron | 40.0% | |
| TCACCAATATGTTGAGATGG+TGG | + | chr1.1:49730160-49730179 | None:intergenic | 40.0% | |
| TCCAAAGTGAGGATTTCATC+AGG | + | chr1.1:49728284-49728303 | None:intergenic | 40.0% | |
| TCCAAGCACTTGGAATTAGT+AGG | - | chr1.1:49728001-49728020 | MS.gene30858:intron | 40.0% | |
| TCTGTCAATTCAACAACCTC+TGG | - | chr1.1:49729609-49729628 | MS.gene30858:intron | 40.0% | |
| TGCTAAGTAGGGATAGAGAT+TGG | + | chr1.1:49728473-49728492 | None:intergenic | 40.0% | |
| TGGACTATACTTTGAGCACA+AGG | - | chr1.1:49728952-49728971 | MS.gene30858:intron | 40.0% | |
| TGTTGAATTGACAGACTCAC+CGG | + | chr1.1:49729604-49729623 | None:intergenic | 40.0% | |
| TTGATTGGACCTGGATTCTT+TGG | - | chr1.1:49731493-49731512 | MS.gene30858:intron | 40.0% | |
| ! | ACGTGTTTTGCCAAAGAGTA+TGG | - | chr1.1:49730835-49730854 | MS.gene30858:intron | 40.0% |
| ! | AGATTGTTCTGAACCAACTG+AGG | - | chr1.1:49729286-49729305 | MS.gene30858:CDS | 40.0% |
| ! | CATAGCTTTGCTTTGTATGC+TGG | - | chr1.1:49730680-49730699 | MS.gene30858:intron | 40.0% |
| ! | CTTTTGTTGGAAAGGACATC+TGG | - | chr1.1:49730188-49730207 | MS.gene30858:intron | 40.0% |
| ! | GACCTGGATTCTTTGGTAAT+TGG | - | chr1.1:49731500-49731519 | MS.gene30858:intron | 40.0% |
| ! | GGCAATTTTTGACACAATGC+AGG | - | chr1.1:49729507-49729526 | MS.gene30858:intron | 40.0% |
| ! | GTTTTCCATGCTATCACCTT+TGG | + | chr1.1:49731306-49731325 | None:intergenic | 40.0% |
| ! | TCCGTTCCAGACTTTCTTTT+TGG | - | chr1.1:49728110-49728129 | MS.gene30858:CDS | 40.0% |
| !! | AGAAATACCGACTTCATACG+CGG | - | chr1.1:49731195-49731214 | MS.gene30858:intron | 40.0% |
| !! | ATGAGTGGGTTGTGTTATGA+GGG | - | chr1.1:49729833-49729852 | MS.gene30858:CDS | 40.0% |
| !! | TAATTTGCTAGGACAAGGCA+AGG | - | chr1.1:49730806-49730825 | MS.gene30858:intron | 40.0% |
| !! | TATGAGTGGGTTGTGTTATG+AGG | - | chr1.1:49729832-49729851 | MS.gene30858:CDS | 40.0% |
| !! | TGTTGATTCGTCCATTTCAG+TGG | - | chr1.1:49729563-49729582 | MS.gene30858:CDS | 40.0% |
| !! | TTTTGCCAAAGAGTATGGTG+TGG | - | chr1.1:49730840-49730859 | MS.gene30858:intron | 40.0% |
| CACTCTGTTGTAGTTCTTGG+AGG | - | chr1.1:49731245-49731264 | MS.gene30858:intron | 45.0% | |
| CGTCGGTGTAAAAAGCTGAA+AGG | - | chr1.1:49728314-49728333 | MS.gene30858:intron | 45.0% | |
| CTCTTCCAAAGGTGATAGCA+TGG | - | chr1.1:49731298-49731317 | MS.gene30858:intron | 45.0% | |
| CTTTGGACAATGCTGATCGT+CGG | - | chr1.1:49728297-49728316 | MS.gene30858:intron | 45.0% | |
| GATCAGCATTGTCCAAAGTG+AGG | + | chr1.1:49728295-49728314 | None:intergenic | 45.0% | |
| GCAACATTACGTAGTCGTCA+AGG | + | chr1.1:49730867-49730886 | None:intergenic | 45.0% | |
| GCCTACTAATTCCAAGTGCT+TGG | + | chr1.1:49728005-49728024 | None:intergenic | 45.0% | |
| GCTTTGTATGCTGGATACCA+AGG | - | chr1.1:49730689-49730708 | MS.gene30858:intron | 45.0% | |
| GTTGAATTGACAGACTCACC+GGG | + | chr1.1:49729603-49729622 | None:intergenic | 45.0% | |
| GTTTGCAACTTCCAAGCACT+TGG | - | chr1.1:49727991-49728010 | MS.gene30858:intron | 45.0% | |
| TGAGAGGAACAATATGGGAC+TGG | - | chr1.1:49728718-49728737 | MS.gene30858:intron | 45.0% | |
| TGAGGGCAACTTACATATCC+AGG | - | chr1.1:49729850-49729869 | MS.gene30858:CDS | 45.0% | |
| TGATCAGTACTACTTGCAGC+TGG | + | chr1.1:49731227-49731246 | None:intergenic | 45.0% | |
| TTCTCAGTAGCTGCCAACTT+CGG | + | chr1.1:49729398-49729417 | None:intergenic | 45.0% | |
| ! | CCCGTGTCTGTTTTCTTTTC+AGG | + | chr1.1:49728165-49728184 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGCTTTCTCTA+AGG | - | chr1.1:49728331-49728350 | MS.gene30858:intron | 45.0% |
| AAGGGCCACACCATACTCTT+TGG | + | chr1.1:49730848-49730867 | None:intergenic | 50.0% | |
| ACAACGGTGACGTTTCGCTT+CGG | + | chr1.1:49730895-49730914 | None:intergenic | 50.0% | |
| GAACTCTCCGCGTATGAAGT+CGG | + | chr1.1:49731205-49731224 | None:intergenic | 50.0% | |
| GTGGCAGAGTTTACTACTCC+CGG | - | chr1.1:49729582-49729601 | MS.gene30858:intron | 50.0% | |
| GCGAAACGTCACCGTTGTTC+AGG | - | chr1.1:49730897-49730916 | MS.gene30858:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 49727888 | 49731525 | 49727888 | ID=MS.gene30858 |
| chr1.1 | mRNA | 49727888 | 49731525 | 49727888 | ID=MS.gene30858.t1;Parent=MS.gene30858 |
| chr1.1 | exon | 49731519 | 49731525 | 49731519 | ID=MS.gene30858.t1.exon1;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49731519 | 49731525 | 49731519 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49731061 | 49731179 | 49731061 | ID=MS.gene30858.t1.exon2;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49731061 | 49731179 | 49731061 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49729962 | 49730024 | 49729962 | ID=MS.gene30858.t1.exon3;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49729962 | 49730024 | 49729962 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49729810 | 49729884 | 49729810 | ID=MS.gene30858.t1.exon4;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49729810 | 49729884 | 49729810 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49729684 | 49729733 | 49729684 | ID=MS.gene30858.t1.exon5;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49729684 | 49729733 | 49729684 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49729542 | 49729593 | 49729542 | ID=MS.gene30858.t1.exon6;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49729542 | 49729593 | 49729542 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49729164 | 49729316 | 49729164 | ID=MS.gene30858.t1.exon7;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49729164 | 49729316 | 49729164 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49728495 | 49728596 | 49728495 | ID=MS.gene30858.t1.exon8;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49728495 | 49728596 | 49728495 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49728013 | 49728216 | 49728013 | ID=MS.gene30858.t1.exon9;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49728013 | 49728216 | 49728013 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| chr1.1 | exon | 49727888 | 49727926 | 49727888 | ID=MS.gene30858.t1.exon10;Parent=MS.gene30858.t1 |
| chr1.1 | CDS | 49727888 | 49727926 | 49727888 | ID=cds.MS.gene30858.t1;Parent=MS.gene30858.t1 |
| Gene Sequence |
| Protein sequence |
