Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30890.t1 | XP_013468266.1 | 92.7 | 749 | 54 | 1 | 1 | 749 | 1 | 748 | 0.00E+00 | 1148.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30890.t1 | Q93WK5 | 44.3 | 757 | 290 | 19 | 36 | 739 | 36 | 713 | 1.1e-96 | 355.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30890.t1 | A0A072VLK8 | 92.7 | 749 | 54 | 1 | 1 | 749 | 1 | 748 | 0.0e+00 | 1148.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054412 | MS.gene30890 | 0.824201 | 9.18E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30890.t1 | MTR_1g067110 | 97.063 | 749 | 21 | 1 | 1 | 749 | 1 | 748 | 0.0 | 1509 |
MS.gene30890.t1 | MTR_1g067110 | 96.513 | 717 | 24 | 1 | 1 | 717 | 1 | 716 | 0.0 | 1439 |
MS.gene30890.t1 | MTR_1g067110 | 96.747 | 584 | 18 | 1 | 166 | 749 | 1 | 583 | 0.0 | 1164 |
MS.gene30890.t1 | MTR_4g061360 | 43.680 | 712 | 360 | 12 | 56 | 737 | 63 | 763 | 3.06e-151 | 460 |
MS.gene30890.t1 | MTR_3g092780 | 32.950 | 695 | 371 | 20 | 73 | 737 | 44 | 673 | 2.58e-75 | 257 |
MS.gene30890.t1 | MTR_3g092780 | 32.950 | 695 | 370 | 21 | 73 | 737 | 44 | 672 | 1.00e-74 | 256 |
MS.gene30890.t1 | MTR_3g092780 | 49.261 | 203 | 103 | 0 | 73 | 275 | 44 | 246 | 4.77e-56 | 203 |
MS.gene30890.t1 | MTR_3g092780 | 29.310 | 348 | 173 | 15 | 410 | 737 | 338 | 632 | 5.64e-14 | 75.9 |
MS.gene30890.t1 | MTR_3g092780 | 49.261 | 203 | 102 | 1 | 73 | 275 | 44 | 245 | 1.97e-55 | 201 |
MS.gene30890.t1 | MTR_3g092780 | 29.310 | 348 | 173 | 15 | 410 | 737 | 337 | 631 | 5.78e-14 | 75.9 |
MS.gene30890.t1 | MTR_7g118260 | 58.915 | 129 | 53 | 0 | 78 | 206 | 7 | 135 | 4.03e-46 | 173 |
MS.gene30890.t1 | MTR_7g118260 | 62.745 | 51 | 16 | 1 | 687 | 737 | 499 | 546 | 4.14e-12 | 69.7 |
MS.gene30890.t1 | MTR_7g118260 | 58.915 | 129 | 53 | 0 | 78 | 206 | 7 | 135 | 4.23e-46 | 174 |
MS.gene30890.t1 | MTR_7g118260 | 62.745 | 51 | 16 | 1 | 687 | 737 | 536 | 583 | 3.61e-12 | 70.1 |
MS.gene30890.t1 | MTR_3g037390 | 42.188 | 128 | 74 | 0 | 79 | 206 | 18 | 145 | 1.21e-25 | 112 |
MS.gene30890.t1 | MTR_3g037390 | 57.627 | 59 | 22 | 1 | 677 | 735 | 483 | 538 | 2.47e-12 | 70.5 |
MS.gene30890.t1 | MTR_4g108880 | 41.406 | 128 | 75 | 0 | 79 | 206 | 27 | 154 | 1.48e-25 | 112 |
MS.gene30890.t1 | MTR_4g108880 | 55.738 | 61 | 24 | 1 | 677 | 737 | 490 | 547 | 8.64e-13 | 72.0 |
MS.gene30890.t1 | MTR_2g450070 | 38.525 | 122 | 72 | 2 | 85 | 206 | 22 | 140 | 1.17e-22 | 103 |
MS.gene30890.t1 | MTR_2g450070 | 38.525 | 122 | 72 | 2 | 85 | 206 | 22 | 140 | 1.37e-22 | 103 |
MS.gene30890.t1 | MTR_1g032570 | 35.366 | 164 | 91 | 3 | 85 | 247 | 15 | 164 | 5.05e-22 | 101 |
MS.gene30890.t1 | MTR_3g102600 | 39.200 | 125 | 73 | 2 | 85 | 209 | 12 | 133 | 1.65e-21 | 93.2 |
MS.gene30890.t1 | MTR_3g106220 | 37.705 | 122 | 73 | 2 | 85 | 206 | 12 | 130 | 4.03e-21 | 99.0 |
MS.gene30890.t1 | MTR_2g034960 | 39.344 | 122 | 71 | 1 | 85 | 206 | 33 | 151 | 7.64e-21 | 97.8 |
MS.gene30890.t1 | MTR_4g121020 | 33.121 | 157 | 102 | 1 | 85 | 241 | 35 | 188 | 8.08e-21 | 97.8 |
MS.gene30890.t1 | MTR_4g121020 | 33.121 | 157 | 102 | 1 | 85 | 241 | 35 | 188 | 8.28e-21 | 97.8 |
MS.gene30890.t1 | MTR_3g102600 | 39.200 | 125 | 73 | 2 | 85 | 209 | 12 | 133 | 1.95e-20 | 91.3 |
MS.gene30890.t1 | MTR_4g131580 | 37.705 | 122 | 73 | 1 | 85 | 206 | 21 | 139 | 3.03e-20 | 95.9 |
MS.gene30890.t1 | MTR_1g013170 | 34.586 | 133 | 84 | 2 | 85 | 217 | 9 | 138 | 3.56e-19 | 92.0 |
MS.gene30890.t1 | MTR_4g131570 | 36.066 | 122 | 75 | 1 | 85 | 206 | 21 | 139 | 8.76e-19 | 91.3 |
MS.gene30890.t1 | MTR_3g086100 | 36.066 | 122 | 75 | 1 | 85 | 206 | 17 | 135 | 2.44e-18 | 89.7 |
MS.gene30890.t1 | MTR_4g131600 | 33.607 | 122 | 78 | 1 | 85 | 206 | 24 | 142 | 4.35e-17 | 85.9 |
MS.gene30890.t1 | MTR_1g013180 | 35.246 | 122 | 76 | 2 | 85 | 206 | 160 | 278 | 7.76e-17 | 85.1 |
MS.gene30890.t1 | MTR_8g079940 | 35.246 | 122 | 76 | 1 | 85 | 206 | 29 | 147 | 9.47e-17 | 84.7 |
MS.gene30890.t1 | MTR_3g102600 | 43.678 | 87 | 46 | 2 | 123 | 209 | 1 | 84 | 1.39e-16 | 77.4 |
MS.gene30890.t1 | MTR_3g102600 | 43.678 | 87 | 46 | 2 | 123 | 209 | 1 | 84 | 1.03e-15 | 76.3 |
MS.gene30890.t1 | MTR_7g490310 | 30.935 | 139 | 78 | 2 | 85 | 205 | 9 | 147 | 6.44e-15 | 75.5 |
MS.gene30890.t1 | MTR_7g117705 | 33.077 | 130 | 83 | 3 | 85 | 213 | 9 | 135 | 1.06e-14 | 77.8 |
MS.gene30890.t1 | MTR_5g036480 | 27.717 | 184 | 104 | 4 | 83 | 252 | 14 | 182 | 2.30e-13 | 70.9 |
MS.gene30890.t1 | MTR_3g102590 | 31.469 | 143 | 94 | 2 | 85 | 226 | 12 | 151 | 4.00e-13 | 69.3 |
MS.gene30890.t1 | MTR_3g093860 | 35.200 | 125 | 68 | 2 | 87 | 199 | 20 | 143 | 4.17e-13 | 68.2 |
MS.gene30890.t1 | MTR_8g093040 | 32.520 | 123 | 78 | 2 | 85 | 206 | 18 | 136 | 5.88e-13 | 70.5 |
MS.gene30890.t1 | MTR_8g024260 | 62.069 | 58 | 19 | 1 | 685 | 742 | 577 | 631 | 6.41e-13 | 72.8 |
MS.gene30890.t1 | MTR_1g032570 | 37.615 | 109 | 53 | 3 | 140 | 247 | 1 | 95 | 6.55e-13 | 72.4 |
MS.gene30890.t1 | MTR_3g102590 | 30.070 | 143 | 96 | 2 | 85 | 226 | 12 | 151 | 1.32e-12 | 68.6 |
MS.gene30890.t1 | MTR_3g037390 | 57.627 | 59 | 22 | 1 | 677 | 735 | 379 | 434 | 2.31e-12 | 70.5 |
MS.gene30890.t1 | MTR_7g118260 | 62.745 | 51 | 16 | 1 | 687 | 737 | 450 | 497 | 2.88e-12 | 70.1 |
MS.gene30890.t1 | MTR_7g118260 | 62.745 | 51 | 16 | 1 | 687 | 737 | 366 | 413 | 3.09e-12 | 69.7 |
MS.gene30890.t1 | MTR_1g049100 | 31.746 | 126 | 75 | 2 | 85 | 199 | 8 | 133 | 1.39e-11 | 64.7 |
MS.gene30890.t1 | MTR_3g078613 | 28.477 | 151 | 93 | 4 | 82 | 223 | 20 | 164 | 3.48e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30890.t1 | AT5G02810 | 49.464 | 746 | 267 | 23 | 36 | 739 | 36 | 713 | 1.84e-175 | 521 |
MS.gene30890.t1 | AT5G02810 | 46.216 | 621 | 231 | 21 | 161 | 739 | 10 | 569 | 2.76e-109 | 345 |
MS.gene30890.t1 | AT5G60100 | 46.804 | 438 | 162 | 13 | 73 | 495 | 52 | 433 | 1.11e-91 | 296 |
MS.gene30890.t1 | AT5G60100 | 46.000 | 100 | 38 | 4 | 647 | 737 | 392 | 484 | 6.02e-14 | 75.5 |
MS.gene30890.t1 | AT5G60100 | 46.804 | 438 | 162 | 13 | 73 | 495 | 52 | 433 | 1.11e-91 | 296 |
MS.gene30890.t1 | AT5G60100 | 46.000 | 100 | 38 | 4 | 647 | 737 | 392 | 484 | 6.02e-14 | 75.5 |
MS.gene30890.t1 | AT5G60100 | 46.804 | 438 | 162 | 13 | 73 | 495 | 52 | 433 | 1.11e-91 | 296 |
MS.gene30890.t1 | AT5G60100 | 46.000 | 100 | 38 | 4 | 647 | 737 | 392 | 484 | 6.02e-14 | 75.5 |
MS.gene30890.t1 | AT5G60100 | 48.462 | 390 | 137 | 11 | 73 | 448 | 52 | 391 | 1.98e-89 | 287 |
MS.gene30890.t1 | AT5G60100 | 48.462 | 390 | 137 | 11 | 73 | 448 | 52 | 391 | 1.98e-89 | 287 |
MS.gene30890.t1 | AT5G60100 | 48.462 | 390 | 137 | 11 | 73 | 448 | 52 | 391 | 1.98e-89 | 287 |
MS.gene30890.t1 | AT5G60100 | 44.086 | 465 | 162 | 14 | 73 | 495 | 52 | 460 | 1.33e-85 | 280 |
MS.gene30890.t1 | AT5G60100 | 46.000 | 100 | 38 | 4 | 647 | 737 | 419 | 511 | 4.85e-14 | 75.9 |
MS.gene30890.t1 | AT2G46790 | 57.463 | 134 | 57 | 0 | 73 | 206 | 25 | 158 | 4.74e-51 | 185 |
MS.gene30890.t1 | AT2G46790 | 57.463 | 134 | 57 | 0 | 73 | 206 | 25 | 158 | 5.73e-51 | 185 |
MS.gene30890.t1 | AT2G46790 | 49.020 | 102 | 45 | 4 | 643 | 744 | 371 | 465 | 2.53e-17 | 85.9 |
MS.gene30890.t1 | AT5G24470 | 59.701 | 134 | 54 | 0 | 73 | 206 | 38 | 171 | 9.46e-50 | 184 |
MS.gene30890.t1 | AT5G24470 | 66.038 | 53 | 15 | 1 | 691 | 743 | 508 | 557 | 3.07e-13 | 73.6 |
MS.gene30890.t1 | AT5G61380 | 40.625 | 128 | 76 | 0 | 79 | 206 | 13 | 140 | 1.05e-23 | 107 |
MS.gene30890.t1 | AT5G61380 | 53.226 | 62 | 26 | 1 | 676 | 737 | 517 | 575 | 3.20e-12 | 70.5 |
MS.gene30890.t1 | AT3G16857 | 35.227 | 176 | 103 | 3 | 85 | 254 | 37 | 207 | 3.35e-22 | 102 |
MS.gene30890.t1 | AT3G16857 | 35.227 | 176 | 103 | 3 | 85 | 254 | 37 | 207 | 3.40e-22 | 102 |
MS.gene30890.t1 | AT2G25180 | 33.702 | 181 | 87 | 5 | 85 | 261 | 17 | 168 | 1.63e-21 | 99.8 |
MS.gene30890.t1 | AT4G31920 | 38.017 | 121 | 72 | 2 | 85 | 205 | 17 | 134 | 2.60e-19 | 92.8 |
MS.gene30890.t1 | AT2G46670 | 49.020 | 102 | 45 | 4 | 643 | 744 | 86 | 180 | 1.87e-18 | 84.3 |
MS.gene30890.t1 | AT2G01760 | 37.705 | 122 | 74 | 1 | 85 | 206 | 11 | 130 | 5.04e-18 | 87.4 |
MS.gene30890.t1 | AT1G67710 | 35.252 | 139 | 83 | 2 | 85 | 219 | 11 | 146 | 9.82e-18 | 87.8 |
MS.gene30890.t1 | AT2G46790 | 49.020 | 102 | 45 | 4 | 643 | 744 | 214 | 308 | 3.64e-17 | 83.6 |
MS.gene30890.t1 | AT2G46790 | 49.020 | 102 | 45 | 4 | 643 | 744 | 214 | 308 | 3.64e-17 | 83.6 |
MS.gene30890.t1 | AT2G46790 | 49.020 | 102 | 45 | 4 | 643 | 744 | 254 | 348 | 4.29e-17 | 84.0 |
MS.gene30890.t1 | AT2G46790 | 70.732 | 41 | 12 | 0 | 166 | 206 | 1 | 41 | 4.79e-15 | 77.8 |
MS.gene30890.t1 | AT3G16857 | 35.461 | 141 | 80 | 3 | 120 | 254 | 2 | 137 | 1.11e-15 | 81.6 |
MS.gene30890.t1 | AT3G62670 | 34.524 | 168 | 101 | 6 | 77 | 242 | 34 | 194 | 1.34e-14 | 77.4 |
MS.gene30890.t1 | AT1G10470 | 31.724 | 145 | 84 | 2 | 80 | 212 | 29 | 170 | 1.37e-14 | 75.1 |
MS.gene30890.t1 | AT2G01760 | 37.168 | 113 | 68 | 2 | 94 | 206 | 49 | 158 | 6.75e-14 | 75.1 |
MS.gene30890.t1 | AT5G58080 | 31.967 | 122 | 79 | 1 | 85 | 206 | 18 | 135 | 9.14e-14 | 75.5 |
MS.gene30890.t1 | AT1G59940 | 34.351 | 131 | 71 | 2 | 87 | 205 | 127 | 254 | 2.21e-13 | 72.4 |
MS.gene30890.t1 | AT1G10470 | 31.944 | 144 | 87 | 2 | 80 | 213 | 15 | 157 | 3.46e-13 | 70.5 |
MS.gene30890.t1 | AT5G62920 | 35.772 | 123 | 64 | 4 | 77 | 199 | 41 | 148 | 3.99e-13 | 68.9 |
MS.gene30890.t1 | AT1G59940 | 33.835 | 133 | 73 | 2 | 85 | 205 | 33 | 162 | 6.56e-13 | 69.3 |
MS.gene30890.t1 | AT3G56380 | 33.077 | 130 | 77 | 2 | 85 | 204 | 20 | 149 | 9.98e-13 | 67.0 |
MS.gene30890.t1 | AT3G48100 | 35.433 | 127 | 68 | 4 | 85 | 199 | 25 | 149 | 1.57e-12 | 67.4 |
MS.gene30890.t1 | AT1G19050 | 33.333 | 132 | 75 | 2 | 85 | 205 | 24 | 153 | 2.21e-12 | 67.4 |
MS.gene30890.t1 | AT2G40670 | 32.593 | 135 | 79 | 2 | 81 | 203 | 25 | 159 | 5.62e-12 | 65.1 |
MS.gene30890.t1 | AT3G56380 | 32.824 | 131 | 77 | 3 | 85 | 204 | 20 | 150 | 1.28e-11 | 63.9 |
MS.gene30890.t1 | AT3G57040 | 28.986 | 138 | 79 | 2 | 87 | 205 | 11 | 148 | 1.83e-11 | 65.1 |
MS.gene30890.t1 | AT3G57040 | 28.986 | 138 | 79 | 2 | 87 | 205 | 11 | 148 | 1.83e-11 | 65.1 |
MS.gene30890.t1 | AT1G74890 | 31.618 | 136 | 78 | 2 | 77 | 212 | 34 | 154 | 4.21e-11 | 63.5 |
Find 179 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTGATTTAATAGATTTC+TGG | 0.104631 | 1.2:-50497015 | None:intergenic |
TGCACTTCTATACAAGATTA+TGG | 0.158802 | 1.2:+50496374 | MS.gene30890:CDS |
AGAAGTTGGGTCTTCTATTT+AGG | 0.167561 | 1.2:-50500045 | None:intergenic |
CCAGATTGATTCTCACAATT+AGG | 0.182320 | 1.2:-50499938 | None:intergenic |
ATTGCAAGCTTGGAAGATTT+TGG | 0.231070 | 1.2:+50496287 | MS.gene30890:CDS |
GATGGTTCCTCCAGTCTTAA+AGG | 0.244142 | 1.2:+50498868 | MS.gene30890:CDS |
TGCTAGCATCATTTGAGTTC+TGG | 0.274365 | 1.2:-50500449 | None:intergenic |
AATGGAAGCAATGGACAAAA+TGG | 0.284536 | 1.2:+50500894 | MS.gene30890:CDS |
CTCTCTTATAACTGCAGATT+TGG | 0.286096 | 1.2:-50500511 | None:intergenic |
TGCTAGCAACAACATTGATA+TGG | 0.296871 | 1.2:+50500464 | MS.gene30890:CDS |
AAAGGAGTGTCTAGAGAAAA+AGG | 0.305223 | 1.2:+50498886 | MS.gene30890:CDS |
CAGATTGATTCTCACAATTA+GGG | 0.310638 | 1.2:-50499937 | None:intergenic |
AAAACCTGTGGCAGCATGTT+TGG | 0.312351 | 1.2:+50496634 | MS.gene30890:CDS |
CCTTGATTTAATAGATTTCT+GGG | 0.316876 | 1.2:-50497014 | None:intergenic |
GAAGTTGGGTCTTCTATTTA+GGG | 0.323812 | 1.2:-50500044 | None:intergenic |
AGAAGCTGGTCCTGCAATTC+AGG | 0.327601 | 1.2:+50500150 | MS.gene30890:CDS |
GTGGCAATGCCTGGTTTATC+AGG | 0.332763 | 1.2:+50496348 | MS.gene30890:CDS |
TGAAAAGTTTGATAACAATT+CGG | 0.339114 | 1.2:+50497042 | MS.gene30890:CDS |
GAAAAGTTTGATAACAATTC+GGG | 0.346605 | 1.2:+50497043 | MS.gene30890:CDS |
CAGCAAATGGATTGCAAGCT+TGG | 0.350061 | 1.2:+50496277 | MS.gene30890:CDS |
GATGTCATCTCATGACTCTA+TGG | 0.359807 | 1.2:+50496539 | MS.gene30890:CDS |
GACAGCAACAATGGACTTGC+TGG | 0.359847 | 1.2:+50500954 | MS.gene30890:CDS |
TTTACATATTAGATCCCTTA+AGG | 0.361725 | 1.2:+50494198 | MS.gene30890:CDS |
GAGCAAGATAATGGAAGTTT+AGG | 0.362759 | 1.2:+50497076 | MS.gene30890:CDS |
GTAACTTCTAAGCTGTTATT+AGG | 0.363149 | 1.2:-50500372 | None:intergenic |
TCCCACTGAGAGCCTGATTT+AGG | 0.367118 | 1.2:-50498773 | None:intergenic |
TGACAAGGGTTCTGCTACTC+AGG | 0.372499 | 1.2:+50500677 | MS.gene30890:CDS |
AATTTGCTCATTGAATTTAG+AGG | 0.373603 | 1.2:-50499897 | None:intergenic |
TTGGTTGTTGATGCCTCTGC+TGG | 0.385063 | 1.2:-50500534 | None:intergenic |
CTCAAGGGGCAATTATTTGT+TGG | 0.386253 | 1.2:+50494167 | MS.gene30890:CDS |
GCACTTCTATACAAGATTAT+GGG | 0.386285 | 1.2:+50496375 | MS.gene30890:CDS |
TTTAAGCTCATTCTTGCGTA+TGG | 0.388945 | 1.2:-50496613 | None:intergenic |
CACTACCATCACCATTGTTC+AGG | 0.390653 | 1.2:-50497099 | None:intergenic |
TTCCGTTCATCCTGAATTGC+AGG | 0.392365 | 1.2:-50500160 | None:intergenic |
ACTCCACAAGCAAGACCTTA+AGG | 0.392485 | 1.2:-50494213 | None:intergenic |
GTTGTCAATATCTGAGAAGT+TGG | 0.394245 | 1.2:-50500059 | None:intergenic |
AGCAATGATGAGCAAGATAA+TGG | 0.400711 | 1.2:+50497067 | MS.gene30890:CDS |
GCGGTTCCAGTCAAAATTGC+AGG | 0.406686 | 1.2:+50499842 | MS.gene30890:intron |
TGGAGTGACTGATGGAGTTA+AGG | 0.413525 | 1.2:+50494084 | MS.gene30890:CDS |
GCATCATTTGAGTTCTGGTT+AGG | 0.415598 | 1.2:-50500444 | None:intergenic |
GTCAACTTCTACAGCTCGTT+TGG | 0.415675 | 1.2:-50498747 | None:intergenic |
CTCACTTGCATTACCATTCG+AGG | 0.416999 | 1.2:-50502743 | None:intergenic |
TCAAGGGGCAATTATTTGTT+GGG | 0.420288 | 1.2:+50494168 | MS.gene30890:CDS |
TTGGTCAGCGTTTGCGGGAT+GGG | 0.420714 | 1.2:+50494008 | MS.gene30890:CDS |
GAAGCAACGCAGTGACAATA+TGG | 0.423326 | 1.2:-50494252 | None:intergenic |
CATCATGCTCAGGTGGCAAC+TGG | 0.423674 | 1.2:-50500749 | None:intergenic |
GTCTTTAAGTGTTTGTCAAA+GGG | 0.426456 | 1.2:+50496567 | MS.gene30890:CDS |
AAGAACTTGGTCAGCGTTTG+CGG | 0.431358 | 1.2:+50494002 | MS.gene30890:CDS |
GAAGATTCGGCATCATGCTC+AGG | 0.431544 | 1.2:-50500759 | None:intergenic |
CTTCGCAATTGTAGTTATGA+AGG | 0.432435 | 1.2:+50494271 | MS.gene30890:CDS |
CTTTCTTTCCTTCAGTCTAG+TGG | 0.435646 | 1.2:+50496965 | MS.gene30890:intron |
ATCCCTTAAGGTCTTGCTTG+TGG | 0.436804 | 1.2:+50494210 | MS.gene30890:CDS |
TTAACTGAGGTGGCAATGCC+TGG | 0.438214 | 1.2:+50496339 | MS.gene30890:CDS |
TTCCCTGCATATTTCAGCAT+TGG | 0.441824 | 1.2:-50498843 | None:intergenic |
TAAAATGAGATCAATATGAT+TGG | 0.443706 | 1.2:-50496319 | None:intergenic |
GGAGTTAAGGTTGGTGAGGG+AGG | 0.444636 | 1.2:+50494097 | MS.gene30890:CDS |
TTCTACAGCTCGTTTGGTCC+AGG | 0.448107 | 1.2:-50498741 | None:intergenic |
AACTTAAATGAAGGAGTAGC+TGG | 0.450112 | 1.2:+50494037 | MS.gene30890:CDS |
AATGGACTTGCTGGGAATAG+TGG | 0.453499 | 1.2:+50500963 | MS.gene30890:CDS |
TGGGCTGGAAAGCAGACGTT+TGG | 0.453554 | 1.2:-50500566 | None:intergenic |
AGAACTTGGTCAGCGTTTGC+GGG | 0.454509 | 1.2:+50494003 | MS.gene30890:CDS |
TTTCTTTCCTTCAGTCTAGT+GGG | 0.456206 | 1.2:+50496966 | MS.gene30890:intron |
TCTAGACACTCCTTTAAGAC+TGG | 0.457847 | 1.2:-50498878 | None:intergenic |
TTCCTTCAGTCTAGTGGGAG+TGG | 0.461821 | 1.2:+50496971 | MS.gene30890:intron |
GAAGTTGACAGTCCTAAATC+AGG | 0.462528 | 1.2:+50498761 | MS.gene30890:CDS |
CTCCACAAGCAAGACCTTAA+GGG | 0.463153 | 1.2:-50494212 | None:intergenic |
TCAGTTATTGAAGCAGCAAA+TGG | 0.463336 | 1.2:+50496264 | MS.gene30890:intron |
AGTATCAATAGAAGTGCTTC+AGG | 0.463935 | 1.2:+50500864 | MS.gene30890:CDS |
CCTAATTGTGAGAATCAATC+TGG | 0.463977 | 1.2:+50499938 | MS.gene30890:CDS |
AGTGCCAGTTGAAGGTAATA+CGG | 0.464184 | 1.2:+50500833 | MS.gene30890:CDS |
CTCTTGAGCTCAGTTTAAAG+AGG | 0.474120 | 1.2:+50500113 | MS.gene30890:CDS |
AGTGGTGATGCTAGTGGAAA+TGG | 0.475297 | 1.2:+50500987 | MS.gene30890:CDS |
ATTCCAATGCTGAAATATGC+AGG | 0.475867 | 1.2:+50498840 | MS.gene30890:CDS |
TTCAATGAGCAAATTAATAG+AGG | 0.478804 | 1.2:+50499905 | MS.gene30890:CDS |
AGTCTTTAAGTGTTTGTCAA+AGG | 0.479846 | 1.2:+50496566 | MS.gene30890:CDS |
AGTCACCATTGACACTCATC+TGG | 0.480036 | 1.2:-50493976 | None:intergenic |
AAGGTTGGTGAGGGAGGGAA+TGG | 0.483694 | 1.2:+50494103 | MS.gene30890:CDS |
TTGTCAATATCTGAGAAGTT+GGG | 0.484449 | 1.2:-50500058 | None:intergenic |
TTAAGCTCATTCTTGCGTAT+GGG | 0.487300 | 1.2:-50496612 | None:intergenic |
TTTCCCGTATTACCTTCAAC+TGG | 0.488361 | 1.2:-50500837 | None:intergenic |
TGAAATATGCAGGGAAAAGA+TGG | 0.491685 | 1.2:+50498850 | MS.gene30890:CDS |
AGTGGGAGTGGCAGTGAAAG+TGG | 0.491905 | 1.2:+50496983 | MS.gene30890:CDS |
TCAAAACAAGAATTCTCAAA+GGG | 0.500542 | 1.2:+50501028 | MS.gene30890:CDS |
CCCAGAAATCTATTAAATCA+AGG | 0.500800 | 1.2:+50497014 | MS.gene30890:CDS |
AGCAGCGCTGCAATTAATGC+TGG | 0.502976 | 1.2:+50500918 | MS.gene30890:CDS |
GCTAGCAACAACATTGATAT+GGG | 0.503896 | 1.2:+50500465 | MS.gene30890:CDS |
CTTGGTCAGCGTTTGCGGGA+TGG | 0.504234 | 1.2:+50494007 | MS.gene30890:CDS |
GGGAGACTTCTTAGCATTGA+AGG | 0.505204 | 1.2:-50500322 | None:intergenic |
TCCTCCAAACATGCTGCCAC+AGG | 0.506809 | 1.2:-50496638 | None:intergenic |
GTGGTCAAAGTGCCAGTTGA+AGG | 0.508886 | 1.2:+50500825 | MS.gene30890:CDS |
ATTTGCTCATTGAATTTAGA+GGG | 0.509233 | 1.2:-50499896 | None:intergenic |
GGTAAAAGCATTATTAGCAG+TGG | 0.510774 | 1.2:-50500490 | None:intergenic |
ATGGAAGCAATGGACAAAAT+GGG | 0.515017 | 1.2:+50500895 | MS.gene30890:CDS |
AGAGAGGTGCTTTCATAAGC+AGG | 0.516010 | 1.2:+50501094 | MS.gene30890:CDS |
GCAAATTAATAGAGGACAGA+TGG | 0.519442 | 1.2:+50499913 | MS.gene30890:CDS |
AGAGTTGCTTCCGACACATC+CGG | 0.520860 | 1.2:-50500346 | None:intergenic |
GGGCAATTATTTGTTGGGAG+AGG | 0.522794 | 1.2:+50494173 | MS.gene30890:CDS |
TCATTTGAGTTCTGGTTAGG+AGG | 0.525127 | 1.2:-50500441 | None:intergenic |
GATGATGAAGTGAAATGTAA+TGG | 0.525442 | 1.2:+50494064 | MS.gene30890:CDS |
TTCAGGTTCGATATCAGAGC+AGG | 0.528122 | 1.2:+50502668 | MS.gene30890:intron |
GGAAGCAACAATGGAAGCAA+TGG | 0.529487 | 1.2:+50500885 | MS.gene30890:CDS |
GGGAAGAACAACTTAAATGA+AGG | 0.530123 | 1.2:+50494028 | MS.gene30890:CDS |
GAGTTAAGGTTGGTGAGGGA+GGG | 0.530743 | 1.2:+50494098 | MS.gene30890:CDS |
AACTTGAGCACAAGTGCTGT+CGG | 0.532765 | 1.2:-50498813 | None:intergenic |
ATGTCATCTCATGACTCTAT+GGG | 0.536687 | 1.2:+50496540 | MS.gene30890:CDS |
CTGATCAGTCTGCTTTCTCA+AGG | 0.536827 | 1.2:+50500197 | MS.gene30890:CDS |
CTTTGCATTTGAGAGTCAGA+AGG | 0.538723 | 1.2:-50500007 | None:intergenic |
GTGCCAGTTGAAGGTAATAC+GGG | 0.540221 | 1.2:+50500834 | MS.gene30890:CDS |
TACCGCAGCAACAGTCTCAA+GGG | 0.542656 | 1.2:+50494152 | MS.gene30890:CDS |
ACTTGAGCACAAGTGCTGTC+GGG | 0.543651 | 1.2:-50498812 | None:intergenic |
CCTAGAAAAGTTGAAGAAGC+TGG | 0.545226 | 1.2:+50500136 | MS.gene30890:CDS |
ACCTGTGGCAGCATGTTTGG+AGG | 0.552529 | 1.2:+50496637 | MS.gene30890:CDS |
GGTATCCAGATGAGTGTCAA+TGG | 0.554780 | 1.2:+50493971 | MS.gene30890:CDS |
ACATGTCAACAGACTTGATG+TGG | 0.557814 | 1.2:+50499871 | MS.gene30890:CDS |
GTACCGCAGCAACAGTCTCA+AGG | 0.568297 | 1.2:+50494151 | MS.gene30890:CDS |
ATCAAAACAAGAATTCTCAA+AGG | 0.571810 | 1.2:+50501027 | MS.gene30890:CDS |
AAATGTAATGGAGTGACTGA+TGG | 0.573227 | 1.2:+50494076 | MS.gene30890:CDS |
TGACAATGGTAGTGGCACTC+AGG | 0.582901 | 1.2:+50497120 | MS.gene30890:CDS |
GTCCTGCAATTCAGGATGAA+CGG | 0.586027 | 1.2:+50500158 | MS.gene30890:CDS |
GATGGAGTTAAGGTTGGTGA+GGG | 0.589139 | 1.2:+50494094 | MS.gene30890:CDS |
GTGACTGATGGAGTTAAGGT+TGG | 0.591130 | 1.2:+50494088 | MS.gene30890:CDS |
TCCTAAATCAGGCTCTCAGT+GGG | 0.591373 | 1.2:+50498772 | MS.gene30890:CDS |
AAGTCTCCCACCGGATGTGT+CGG | 0.592788 | 1.2:+50500336 | MS.gene30890:CDS |
AGTGCTTCAGGAAGCAACAA+TGG | 0.594073 | 1.2:+50500876 | MS.gene30890:CDS |
AGATACGACAACAACAATCC+TGG | 0.594626 | 1.2:+50500641 | MS.gene30890:CDS |
AGCGCTGCAATTAATGCTGG+AGG | 0.596114 | 1.2:+50500921 | MS.gene30890:CDS |
TTCCAATGCTGAAATATGCA+GGG | 0.597764 | 1.2:+50498841 | MS.gene30890:CDS |
GCATGTTAGCAACATTGCTG+TGG | 0.597791 | 1.2:-50500722 | None:intergenic |
AGTGCAATGCCTGATAAACC+AGG | 0.599268 | 1.2:-50496357 | None:intergenic |
CTGTTGTTGCTCCACACTGT+GGG | 0.599543 | 1.2:+50500793 | MS.gene30890:CDS |
ACTGTTGTTGCTCCACACTG+TGG | 0.604864 | 1.2:+50500792 | MS.gene30890:CDS |
TTTGCATTTGAGAGTCAGAA+GGG | 0.605063 | 1.2:-50500006 | None:intergenic |
TACTTGCTGCTGAACAGAAG+AGG | 0.605168 | 1.2:-50494131 | None:intergenic |
GATGCTAGTGGAAATGGAAG+TGG | 0.606551 | 1.2:+50500993 | MS.gene30890:CDS |
TGATGGAGTTAAGGTTGGTG+AGG | 0.607226 | 1.2:+50494093 | MS.gene30890:CDS |
AAAGAAAGGAGAGAAAAGAG+AGG | 0.608085 | 1.2:+50501078 | MS.gene30890:CDS |
ACAAACATAGACAGCAACAA+TGG | 0.609596 | 1.2:+50500945 | MS.gene30890:CDS |
ACAGCAACAATGGACTTGCT+GGG | 0.609766 | 1.2:+50500955 | MS.gene30890:CDS |
CTTGCTGGGAATAGTGGCAG+TGG | 0.611874 | 1.2:+50500969 | MS.gene30890:CDS |
GATATTCAATCTCATTCTAG+TGG | 0.613980 | 1.2:+50500414 | MS.gene30890:CDS |
TTTGTGCGACAGTCCTCGAA+TGG | 0.614472 | 1.2:+50502730 | MS.gene30890:CDS |
TTTAAACTGAGCTCAAGAGA+TGG | 0.614604 | 1.2:-50500109 | None:intergenic |
CAACGCAGTGACAATATGGC+GGG | 0.615660 | 1.2:-50494248 | None:intergenic |
AATGGTGACTGTAAAGAACT+TGG | 0.617086 | 1.2:+50493989 | MS.gene30890:CDS |
CTCGAATGGTAATGCAAGTG+AGG | 0.619394 | 1.2:+50502744 | MS.gene30890:CDS |
GCCCCTTGAGACTGTTGCTG+CGG | 0.622409 | 1.2:-50494154 | None:intergenic |
GATTCGGCATCATGCTCAGG+TGG | 0.622530 | 1.2:-50500756 | None:intergenic |
ATGTGAGACAACTTGTTGAG+AGG | 0.623924 | 1.2:-50500610 | None:intergenic |
AAATGAAGGAGTAGCTGGAG+AGG | 0.626419 | 1.2:+50494042 | MS.gene30890:CDS |
AGTGGCAGTGGTGATGCTAG+TGG | 0.626932 | 1.2:+50500981 | MS.gene30890:CDS |
GAACAACGACCACGATATCG+AGG | 0.628327 | 1.2:+50502703 | MS.gene30890:CDS |
GATGGTAGTGACAATGGTAG+TGG | 0.629804 | 1.2:+50497112 | MS.gene30890:CDS |
ACAAATTGCCCTCGATATCG+TGG | 0.630115 | 1.2:-50502712 | None:intergenic |
GTTGCTTCCGACACATCCGG+TGG | 0.630609 | 1.2:-50500343 | None:intergenic |
ACTTCTAAGCTGTTATTAGG+CGG | 0.632200 | 1.2:-50500369 | None:intergenic |
TTAGGCCTGAACAATGGTGA+TGG | 0.633257 | 1.2:+50497094 | MS.gene30890:CDS |
AGATTATGGGCCACCCAACA+CGG | 0.633500 | 1.2:+50496388 | MS.gene30890:CDS |
GGCACCACCTAAAATTGACA+AGG | 0.635166 | 1.2:+50500662 | MS.gene30890:CDS |
CAAAGGTACTAATAATGATG+AGG | 0.638016 | 1.2:+50500081 | MS.gene30890:CDS |
ACACTGTGGGTCATCAAATG+TGG | 0.640190 | 1.2:+50500806 | MS.gene30890:CDS |
AGACACTCCTTTAAGACTGG+AGG | 0.640992 | 1.2:-50498875 | None:intergenic |
GCGCTGCAATTAATGCTGGA+GGG | 0.641325 | 1.2:+50500922 | MS.gene30890:CDS |
TTTGCTCATTGAATTTAGAG+GGG | 0.646894 | 1.2:-50499895 | None:intergenic |
GTCCTAAATCAGGCTCTCAG+TGG | 0.647285 | 1.2:+50498771 | MS.gene30890:CDS |
AATGGTGATGGTAGTGACAA+TGG | 0.650813 | 1.2:+50497106 | MS.gene30890:CDS |
AGACTTCTTAGCATTGAAGG+TGG | 0.657516 | 1.2:-50500319 | None:intergenic |
AGTTATAAGAGAGCCAGCAG+AGG | 0.658218 | 1.2:+50500521 | MS.gene30890:CDS |
TTCTCAGATATTGACAACAA+AGG | 0.660645 | 1.2:+50500064 | MS.gene30890:CDS |
AATGCTAAGAAGTCTCCCAC+CGG | 0.662726 | 1.2:+50500327 | MS.gene30890:CDS |
ACCGCAGCAACAGTCTCAAG+GGG | 0.669084 | 1.2:+50494153 | MS.gene30890:CDS |
GGAAGTTTAGGCCTGAACAA+TGG | 0.671051 | 1.2:+50497088 | MS.gene30890:CDS |
AACAACGACCACGATATCGA+GGG | 0.671078 | 1.2:+50502704 | MS.gene30890:CDS |
TTGCTTCCGACACATCCGGT+GGG | 0.683631 | 1.2:-50500342 | None:intergenic |
GCAACGCAGTGACAATATGG+CGG | 0.685975 | 1.2:-50494249 | None:intergenic |
CATGTCAACAGACTTGATGT+GGG | 0.686791 | 1.2:+50499872 | MS.gene30890:CDS |
ACATTTGATGACCCACAGTG+TGG | 0.694810 | 1.2:-50500804 | None:intergenic |
TCTGACTCTCAAATGCAAAG+CGG | 0.707947 | 1.2:+50500010 | MS.gene30890:CDS |
CTTGTTGAGAGGTACACATG+AGG | 0.720635 | 1.2:-50500599 | None:intergenic |
GCACCACCTAAAATTGACAA+GGG | 0.725107 | 1.2:+50500663 | MS.gene30890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 50493962 | 50502780 | 50493962 | ID=MS.gene30890 |
chr1.2 | mRNA | 50493962 | 50502780 | 50493962 | ID=MS.gene30890.t1;Parent=MS.gene30890 |
chr1.2 | exon | 50493962 | 50494292 | 50493962 | ID=MS.gene30890.t1.exon1;Parent=MS.gene30890.t1 |
chr1.2 | CDS | 50493962 | 50494292 | 50493962 | ID=cds.MS.gene30890.t1;Parent=MS.gene30890.t1 |
chr1.2 | exon | 50496268 | 50496429 | 50496268 | ID=MS.gene30890.t1.exon2;Parent=MS.gene30890.t1 |
chr1.2 | CDS | 50496268 | 50496429 | 50496268 | ID=cds.MS.gene30890.t1;Parent=MS.gene30890.t1 |
chr1.2 | exon | 50496538 | 50496671 | 50496538 | ID=MS.gene30890.t1.exon3;Parent=MS.gene30890.t1 |
chr1.2 | CDS | 50496538 | 50496671 | 50496538 | ID=cds.MS.gene30890.t1;Parent=MS.gene30890.t1 |
chr1.2 | exon | 50496980 | 50497141 | 50496980 | ID=MS.gene30890.t1.exon4;Parent=MS.gene30890.t1 |
chr1.2 | CDS | 50496980 | 50497141 | 50496980 | ID=cds.MS.gene30890.t1;Parent=MS.gene30890.t1 |
chr1.2 | exon | 50498737 | 50498917 | 50498737 | ID=MS.gene30890.t1.exon5;Parent=MS.gene30890.t1 |
chr1.2 | CDS | 50498737 | 50498917 | 50498737 | ID=cds.MS.gene30890.t1;Parent=MS.gene30890.t1 |
chr1.2 | exon | 50499852 | 50500218 | 50499852 | ID=MS.gene30890.t1.exon6;Parent=MS.gene30890.t1 |
chr1.2 | CDS | 50499852 | 50500218 | 50499852 | ID=cds.MS.gene30890.t1;Parent=MS.gene30890.t1 |
chr1.2 | exon | 50500311 | 50501115 | 50500311 | ID=MS.gene30890.t1.exon7;Parent=MS.gene30890.t1 |
chr1.2 | CDS | 50500311 | 50501115 | 50500311 | ID=cds.MS.gene30890.t1;Parent=MS.gene30890.t1 |
chr1.2 | exon | 50502673 | 50502780 | 50502673 | ID=MS.gene30890.t1.exon8;Parent=MS.gene30890.t1 |
chr1.2 | CDS | 50502673 | 50502780 | 50502673 | ID=cds.MS.gene30890.t1;Parent=MS.gene30890.t1 |
Gene Sequence |
Protein sequence |