Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31013.t1 | XP_003602530.1 | 93.6 | 357 | 23 | 0 | 1 | 357 | 1 | 357 | 3.90E-152 | 547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31013.t1 | F4KFC7 | 51.4 | 364 | 159 | 8 | 1 | 357 | 1 | 353 | 2.0e-56 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31013.t1 | G7JAV9 | 93.6 | 357 | 23 | 0 | 1 | 357 | 1 | 357 | 2.8e-152 | 547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31013.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049335 | MS.gene31013 | 0.946819 | 2.22E-105 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31013.t1 | MTR_3g095380 | 98.039 | 357 | 7 | 0 | 1 | 357 | 1 | 357 | 0.0 | 723 |
| MS.gene31013.t1 | MTR_3g095380 | 97.799 | 318 | 7 | 0 | 1 | 318 | 1 | 318 | 0.0 | 639 |
| MS.gene31013.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 6 | 208 | 2.43e-23 | 100 |
| MS.gene31013.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 9 | 211 | 2.46e-23 | 100 |
| MS.gene31013.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 9 | 211 | 1.96e-22 | 96.7 |
| MS.gene31013.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 6 | 208 | 2.14e-22 | 96.7 |
| MS.gene31013.t1 | MTR_6g041880 | 52.000 | 75 | 34 | 2 | 52 | 126 | 7 | 79 | 5.43e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31013.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 9.49e-117 | 342 |
| MS.gene31013.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 9.49e-117 | 342 |
| MS.gene31013.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 9.49e-117 | 342 |
| MS.gene31013.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 9.49e-117 | 342 |
| MS.gene31013.t1 | AT5G09850 | 51.632 | 337 | 140 | 8 | 1 | 326 | 1 | 325 | 1.95e-99 | 298 |
| MS.gene31013.t1 | AT5G05140 | 25.485 | 412 | 221 | 13 | 3 | 334 | 7 | 412 | 2.84e-21 | 94.7 |
| MS.gene31013.t1 | AT3G10820 | 29.500 | 200 | 117 | 6 | 1 | 199 | 8 | 184 | 3.78e-15 | 76.6 |
| MS.gene31013.t1 | AT3G10820 | 28.000 | 200 | 120 | 4 | 1 | 199 | 8 | 184 | 9.80e-15 | 75.9 |
Find 95 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGAACTGATTTAGGTTT+TGG | 0.207613 | 3.3:-79120647 | None:intergenic |
| GCAGAGGTAGGGGCAGTAAC+TGG | 0.242308 | 3.3:-79120704 | None:intergenic |
| GACTGTTCTCTTTCTTGATT+TGG | 0.252210 | 3.3:-79119486 | None:intergenic |
| CTATTCTCACTGTGTGGATT+TGG | 0.266353 | 3.3:-79120496 | None:intergenic |
| CCTGATGATTATGCCCATTT+GGG | 0.274665 | 3.3:-79120369 | None:intergenic |
| GTTGACCTCCGTCGCAATTC+TGG | 0.284508 | 3.3:-79119444 | None:intergenic |
| TCTTTGCGAGGAACTGATTT+AGG | 0.295138 | 3.3:-79120653 | None:intergenic |
| ACCTGATGATTATGCCCATT+TGG | 0.307811 | 3.3:-79120370 | None:intergenic |
| ACACGGCGGGCGTTGACGTC+TGG | 0.362780 | 3.3:+79119302 | MS.gene31013:CDS |
| TCAGTCTGAAGATACTTTGA+TGG | 0.368003 | 3.3:+79119790 | MS.gene31013:intron |
| CCGCGGCGCGGTTGTCGTTC+CGG | 0.369159 | 3.3:-79119520 | None:intergenic |
| GATGGAGTTGCTACAAAATC+TGG | 0.369937 | 3.3:+79119808 | MS.gene31013:CDS |
| CAGAGGTAGGGGCAGTAACT+GGG | 0.397450 | 3.3:-79120703 | None:intergenic |
| GGAAAGAAATTGTTGATGAT+TGG | 0.408203 | 3.3:+79120159 | MS.gene31013:CDS |
| TTGCAGAAAACCACCCCAAA+TGG | 0.410008 | 3.3:+79120355 | MS.gene31013:CDS |
| GTTCAGCTTCGGAGGTGTTA+CGG | 0.414057 | 3.3:-79120619 | None:intergenic |
| AACTACAAAGAGGCCGATAA+TGG | 0.421647 | 3.3:+79120925 | MS.gene31013:CDS |
| AATCAATCACCTTCAACTCT+TGG | 0.433018 | 3.3:-79119850 | None:intergenic |
| AATCGACGAACATTGCTTGA+TGG | 0.437135 | 3.3:-79120020 | None:intergenic |
| TTTGGAGAGTACGCAAAATC+AGG | 0.441104 | 3.3:-79120478 | None:intergenic |
| TATTACATTCCAAGAGTTGA+AGG | 0.441822 | 3.3:+79119841 | MS.gene31013:CDS |
| AGAGGTAGGGGCAGTAACTG+GGG | 0.442679 | 3.3:-79120702 | None:intergenic |
| CGCGATCTCCGTCGCTGCGC+AGG | 0.445659 | 3.3:+79119339 | MS.gene31013:CDS |
| GAGGTAGGGGCAGTAACTGG+GGG | 0.447109 | 3.3:-79120701 | None:intergenic |
| GCTTCTAGAAGATCCTCAAC+AGG | 0.452369 | 3.3:+79119663 | MS.gene31013:CDS |
| GAAAGAAATTGTTGATGATT+GGG | 0.457864 | 3.3:+79120160 | MS.gene31013:CDS |
| GCTGACACAGATGGGAGCTC+TGG | 0.459360 | 3.3:+79120590 | MS.gene31013:intron |
| CCGTCGCAATTCTGGCAAAT+CGG | 0.468609 | 3.3:-79119436 | None:intergenic |
| GTTCTCAAGGAAGGCAGCAC+TGG | 0.479451 | 3.3:+79121132 | MS.gene31013:CDS |
| CCCAAATGGGCATAATCATC+AGG | 0.480623 | 3.3:+79120369 | MS.gene31013:CDS |
| AGGTAGGGGCAGTAACTGGG+GGG | 0.499817 | 3.3:-79120700 | None:intergenic |
| TTTCCTTCAGACTGCGGCGT+CGG | 0.501959 | 3.3:-79119559 | None:intergenic |
| ATCAAGCAATGTTCGTCGAT+TGG | 0.507263 | 3.3:+79120022 | MS.gene31013:CDS |
| AAGAGGGAAAAGCACTCTCA+TGG | 0.508075 | 3.3:+79120199 | MS.gene31013:CDS |
| TGCAGAAAACCACCCCAAAT+GGG | 0.518736 | 3.3:+79120356 | MS.gene31013:CDS |
| CCTTCAGACTGCGGCGTCGG+AGG | 0.522259 | 3.3:-79119556 | None:intergenic |
| GGCTTGCTGCTGCAAGAAAA+CGG | 0.522716 | 3.3:+79120893 | MS.gene31013:CDS |
| TGTCGTTCCGGACTCAGACT+AGG | 0.527954 | 3.3:-79119508 | None:intergenic |
| CCTAAGTCAAAAGCAAAGAA+TGG | 0.530585 | 3.3:+79121080 | MS.gene31013:CDS |
| ATAACGCCGGTGAGCTAAAG+AGG | 0.531488 | 3.3:+79119362 | MS.gene31013:CDS |
| GCAAAGAACAATTCAGGTGA+TGG | 0.534043 | 3.3:+79121043 | MS.gene31013:CDS |
| GAACAGTCCTAGTCTGAGTC+CGG | 0.534784 | 3.3:+79119501 | MS.gene31013:CDS |
| CCTCCGACGCCGCAGTCTGA+AGG | 0.534970 | 3.3:+79119556 | MS.gene31013:CDS |
| AAAGGTGGTGGCAGTTCTCA+AGG | 0.538937 | 3.3:+79121119 | MS.gene31013:CDS |
| TTTGTGTAGGAAACTGACAT+AGG | 0.539813 | 3.3:+79119969 | MS.gene31013:intron |
| TTTGCAAAGCACAAAGGTGG+TGG | 0.542006 | 3.3:+79121107 | MS.gene31013:CDS |
| CATTCTGAGGAGCAGAGGTA+GGG | 0.542374 | 3.3:-79120715 | None:intergenic |
| ATTCTGAGGAGCAGAGGTAG+GGG | 0.547934 | 3.3:-79120714 | None:intergenic |
| TAATTAAACAAAACCTGTTG+AGG | 0.556852 | 3.3:-79119676 | None:intergenic |
| GGTAGGGGCAGTAACTGGGG+GGG | 0.560913 | 3.3:-79120699 | None:intergenic |
| TTGTGTAGGAAACTGACATA+GGG | 0.564467 | 3.3:+79119970 | MS.gene31013:intron |
| GGCGTTATCCTGCGCAGCGA+CGG | 0.566982 | 3.3:-79119347 | None:intergenic |
| GTGAAGCAGAATCCACAAAG+AGG | 0.569929 | 3.3:+79120182 | MS.gene31013:CDS |
| TTTGGAGGTGGGTCTTTGCG+AGG | 0.573343 | 3.3:-79120665 | None:intergenic |
| ATGATTATGCCCATTTGGGG+TGG | 0.576734 | 3.3:-79120365 | None:intergenic |
| AGAGGGAAAAGCACTCTCAT+GGG | 0.577480 | 3.3:+79120200 | MS.gene31013:CDS |
| GAGGAGAAGAGACGGAATCG+TGG | 0.579304 | 3.3:+79119381 | MS.gene31013:CDS |
| ATTCAAAACCGTACATTCTG+AGG | 0.580864 | 3.3:-79120728 | None:intergenic |
| ACATTCTGAGGAGCAGAGGT+AGG | 0.580912 | 3.3:-79120716 | None:intergenic |
| AGCTTCGGAGGTGTTACGGT+CGG | 0.581005 | 3.3:-79120615 | None:intergenic |
| GAGCTAAAGAGGAGAAGAGA+CGG | 0.582096 | 3.3:+79119373 | MS.gene31013:CDS |
| CGATCTATATTACACACGGC+GGG | 0.584757 | 3.3:+79119289 | MS.gene31013:CDS |
| GAACGACAACCGCGCCGCGG+CGG | 0.588629 | 3.3:+79119523 | MS.gene31013:CDS |
| TCTTCTCCTCTTTAGCTCAC+CGG | 0.592478 | 3.3:-79119368 | None:intergenic |
| TCATCAAACAAACCACCGTA+AGG | 0.594373 | 3.3:-79119610 | None:intergenic |
| GATGAGGAGATAGATCCTTA+CGG | 0.597718 | 3.3:+79119595 | MS.gene31013:CDS |
| CCGCCGTGTGTAATATAGAT+CGG | 0.605511 | 3.3:-79119288 | None:intergenic |
| TACTTTGCAAAGCACAAAGG+TGG | 0.607829 | 3.3:+79121104 | MS.gene31013:CDS |
| AAACGAAGACGGTGAAGATG+AGG | 0.609578 | 3.3:+79119579 | MS.gene31013:CDS |
| GAAGAAGCTCCGCCGCGGCG+CGG | 0.611025 | 3.3:-79119532 | None:intergenic |
| CTGCGCAGCGACGGAGATCG+CGG | 0.611264 | 3.3:-79119338 | None:intergenic |
| CCGATTTGCCAGAATTGCGA+CGG | 0.612546 | 3.3:+79119436 | MS.gene31013:CDS |
| TGAAGCAGAATCCACAAAGA+GGG | 0.616018 | 3.3:+79120183 | MS.gene31013:CDS |
| CGGAAATCGTCCAAATCCAT+CGG | 0.620451 | 3.3:-79119268 | None:intergenic |
| GTGGTGGCAGTTCTCAAGGA+AGG | 0.622677 | 3.3:+79121123 | MS.gene31013:CDS |
| CCGTACATTCTGAGGAGCAG+AGG | 0.628754 | 3.3:-79120720 | None:intergenic |
| CTGATGATTATGCCCATTTG+GGG | 0.635715 | 3.3:-79120368 | None:intergenic |
| CAGTCTGAAGGAAACGAAGA+CGG | 0.636870 | 3.3:+79119568 | MS.gene31013:CDS |
| ATTTGCCAGAATTGCGACGG+AGG | 0.638773 | 3.3:+79119439 | MS.gene31013:CDS |
| GCGTCTCTACGCTGCCACCA+CGG | 0.639790 | 3.3:+79119405 | MS.gene31013:CDS |
| GGTTACTTTGCAAAGCACAA+AGG | 0.645193 | 3.3:+79121101 | MS.gene31013:CDS |
| AAGACCCACCTCCAAAACCA+AGG | 0.647167 | 3.3:+79120672 | MS.gene31013:CDS |
| GGAGTTGCTACAAAATCTGG+TGG | 0.648131 | 3.3:+79119811 | MS.gene31013:CDS |
| TGTAGGAAACTGACATAGGG+AGG | 0.652621 | 3.3:+79119973 | MS.gene31013:intron |
| CCGGAACGACAACCGCGCCG+CGG | 0.654440 | 3.3:+79119520 | MS.gene31013:CDS |
| GTCGCTGCGCAGGATAACGC+CGG | 0.655654 | 3.3:+79119349 | MS.gene31013:CDS |
| GCTTCAAGCGAACTACAAAG+AGG | 0.673966 | 3.3:+79120915 | MS.gene31013:CDS |
| TCTTCGTTTCCTTCAGACTG+CGG | 0.687107 | 3.3:-79119565 | None:intergenic |
| GAGGAGAAGAAGCTCCGCCG+CGG | 0.688012 | 3.3:-79119537 | None:intergenic |
| TTTCCGATCTATATTACACA+CGG | 0.691280 | 3.3:+79119285 | MS.gene31013:CDS |
| AATCGGAGTAACCTCCGTGG+TGG | 0.706021 | 3.3:-79119419 | None:intergenic |
| GAGGAGATAGATCCTTACGG+TGG | 0.724438 | 3.3:+79119598 | MS.gene31013:CDS |
| CCGATCTATATTACACACGG+CGG | 0.755687 | 3.3:+79119288 | MS.gene31013:CDS |
| GCAAATCGGAGTAACCTCCG+TGG | 0.764862 | 3.3:-79119422 | None:intergenic |
| TCTCTACGCTGCCACCACGG+AGG | 0.775314 | 3.3:+79119408 | MS.gene31013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCAATTTTTAATGT+TGG | + | chr3.3:79119897-79119916 | MS.gene31013:intron | 10.0% |
| !!! | AACAAATTTTCAACCATTAT+CGG | - | chr3.3:79120941-79120960 | None:intergenic | 20.0% |
| !!! | ATGGGTAATGTTAATATTTT+TGG | + | chr3.3:79120218-79120237 | MS.gene31013:intron | 20.0% |
| !!! | GATTTGTTTTTTATTTGTGT+AGG | + | chr3.3:79119956-79119975 | MS.gene31013:intron | 20.0% |
| !!! | TGGGTAATGTTAATATTTTT+GGG | + | chr3.3:79120219-79120238 | MS.gene31013:intron | 20.0% |
| !!! | TTTTTGTTAAAGTTTGTTGT+TGG | + | chr3.3:79120752-79120771 | MS.gene31013:intron | 20.0% |
| ! | AAAAAAGCAAAGAACAATTC+AGG | + | chr3.3:79121037-79121056 | MS.gene31013:CDS | 25.0% |
| ! | ACTTCACAAAATTAACACTA+GGG | - | chr3.3:79120801-79120820 | None:intergenic | 25.0% |
| ! | GTTAAAAAGTAGGAAGTTAA+AGG | + | chr3.3:79120257-79120276 | MS.gene31013:intron | 25.0% |
| ! | TAATTAAACAAAACCTGTTG+AGG | - | chr3.3:79119679-79119698 | None:intergenic | 25.0% |
| ! | TTGTCAAAGAGTTAAAAAGT+AGG | + | chr3.3:79120247-79120266 | MS.gene31013:intron | 25.0% |
| !!! | GAAAGAAATTGTTGATGATT+GGG | + | chr3.3:79120160-79120179 | MS.gene31013:CDS | 25.0% |
| !!! | GTGAATTTTTGATTATGTGT+AGG | + | chr3.3:79120132-79120151 | MS.gene31013:intron | 25.0% |
| ATCAACCAAATGCAAACAAA+AGG | - | chr3.3:79120557-79120576 | None:intergenic | 30.0% | |
| ATTCGTGTGAAATTCGTTAA+TGG | + | chr3.3:79120289-79120308 | MS.gene31013:intron | 30.0% | |
| CAACAAGGTTAAAGGAATAT+TGG | - | chr3.3:79120531-79120550 | None:intergenic | 30.0% | |
| CACTTCACAAAATTAACACT+AGG | - | chr3.3:79120802-79120821 | None:intergenic | 30.0% | |
| CTTCACAAAATTAACACTAG+GGG | - | chr3.3:79120800-79120819 | None:intergenic | 30.0% | |
| TAAACAACACACGAAACTTT+AGG | - | chr3.3:79121013-79121032 | None:intergenic | 30.0% | |
| TATTACATTCCAAGAGTTGA+AGG | + | chr3.3:79119841-79119860 | MS.gene31013:CDS | 30.0% | |
| TTTCCGATCTATATTACACA+CGG | + | chr3.3:79119285-79119304 | MS.gene31013:CDS | 30.0% | |
| !! | GGAAAGAAATTGTTGATGAT+TGG | + | chr3.3:79120159-79120178 | MS.gene31013:CDS | 30.0% |
| !! | TTTTGATTATGTGTAGGAAG+TGG | + | chr3.3:79120138-79120157 | MS.gene31013:intron | 30.0% |
| !!! | AATGCTGTTTTTTGTAGCAT+TGG | + | chr3.3:79120101-79120120 | MS.gene31013:intron | 30.0% |
| !!! | ACTGATTTAGGTTTTGGTTT+TGG | - | chr3.3:79120644-79120663 | None:intergenic | 30.0% |
| AAGTAGGAAGTTAAAGGAGT+TGG | + | chr3.3:79120263-79120282 | MS.gene31013:intron | 35.0% | |
| AATCAATCACCTTCAACTCT+TGG | - | chr3.3:79119853-79119872 | None:intergenic | 35.0% | |
| ATTCAAAACCGTACATTCTG+AGG | - | chr3.3:79120731-79120750 | None:intergenic | 35.0% | |
| CCTAAGTCAAAAGCAAAGAA+TGG | + | chr3.3:79121080-79121099 | MS.gene31013:CDS | 35.0% | |
| GACTGTTCTCTTTCTTGATT+TGG | - | chr3.3:79119489-79119508 | None:intergenic | 35.0% | |
| TATTCAACATTTGCAGCTGA+TGG | + | chr3.3:79120322-79120341 | MS.gene31013:intron | 35.0% | |
| TCAGTCTGAAGATACTTTGA+TGG | + | chr3.3:79119790-79119809 | MS.gene31013:intron | 35.0% | |
| TTGTGTAGGAAACTGACATA+GGG | + | chr3.3:79119970-79119989 | MS.gene31013:intron | 35.0% | |
| TTTGTGTAGGAAACTGACAT+AGG | + | chr3.3:79119969-79119988 | MS.gene31013:intron | 35.0% | |
| !! | AAAGGCATCAACAAGGTTAA+AGG | - | chr3.3:79120539-79120558 | None:intergenic | 35.0% |
| !! | TGATGCCTTTTGTTTGCATT+TGG | + | chr3.3:79120549-79120568 | MS.gene31013:intron | 35.0% |
| !! | TTTTGTTTGCTGACACAGAT+GGG | + | chr3.3:79120582-79120601 | MS.gene31013:intron | 35.0% |
| !! | TTTTTGTTTGCTGACACAGA+TGG | + | chr3.3:79120581-79120600 | MS.gene31013:intron | 35.0% |
| !!! | CCATTCTTTGCTTTTGACTT+AGG | - | chr3.3:79121083-79121102 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTTGGTTCAGCTT+CGG | - | chr3.3:79120633-79120652 | None:intergenic | 35.0% |
| AACTACAAAGAGGCCGATAA+TGG | + | chr3.3:79120925-79120944 | MS.gene31013:CDS | 40.0% | |
| AATCGACGAACATTGCTTGA+TGG | - | chr3.3:79120023-79120042 | None:intergenic | 40.0% | |
| ACCTGATGATTATGCCCATT+TGG | - | chr3.3:79120373-79120392 | None:intergenic | 40.0% | |
| ATCAAGCAATGTTCGTCGAT+TGG | + | chr3.3:79120022-79120041 | MS.gene31013:CDS | 40.0% | |
| CCTGATGATTATGCCCATTT+GGG | - | chr3.3:79120372-79120391 | None:intergenic | 40.0% | |
| CTATTCTCACTGTGTGGATT+TGG | - | chr3.3:79120499-79120518 | None:intergenic | 40.0% | |
| CTGATGATTATGCCCATTTG+GGG | - | chr3.3:79120371-79120390 | None:intergenic | 40.0% | |
| GATGAGGAGATAGATCCTTA+CGG | + | chr3.3:79119595-79119614 | MS.gene31013:CDS | 40.0% | |
| GATGGAGTTGCTACAAAATC+TGG | + | chr3.3:79119808-79119827 | MS.gene31013:CDS | 40.0% | |
| GCAAAGAACAATTCAGGTGA+TGG | + | chr3.3:79121043-79121062 | MS.gene31013:CDS | 40.0% | |
| TACTTTGCAAAGCACAAAGG+TGG | + | chr3.3:79121104-79121123 | MS.gene31013:CDS | 40.0% | |
| TCATCAAACAAACCACCGTA+AGG | - | chr3.3:79119613-79119632 | None:intergenic | 40.0% | |
| TCTCTGTCTCTGCAATCATT+CGG | - | chr3.3:79120842-79120861 | None:intergenic | 40.0% | |
| TGAAGCAGAATCCACAAAGA+GGG | + | chr3.3:79120183-79120202 | MS.gene31013:CDS | 40.0% | |
| ! | GGTTACTTTGCAAAGCACAA+AGG | + | chr3.3:79121101-79121120 | MS.gene31013:CDS | 40.0% |
| ! | TCTTTGCGAGGAACTGATTT+AGG | - | chr3.3:79120656-79120675 | None:intergenic | 40.0% |
| ! | TTTGGAGAGTACGCAAAATC+AGG | - | chr3.3:79120481-79120500 | None:intergenic | 40.0% |
| !! | AGAGCAATTTTGATGCAGAG+AGG | + | chr3.3:79120872-79120891 | MS.gene31013:CDS | 40.0% |
| !! | CGAGGAACTGATTTAGGTTT+TGG | - | chr3.3:79120650-79120669 | None:intergenic | 40.0% |
| !! | GCAAACAAAAGGCATCAACA+AGG | - | chr3.3:79120546-79120565 | None:intergenic | 40.0% |
| AAACGAAGACGGTGAAGATG+AGG | + | chr3.3:79119579-79119598 | MS.gene31013:CDS | 45.0% | |
| ATGATTATGCCCATTTGGGG+TGG | - | chr3.3:79120368-79120387 | None:intergenic | 45.0% | |
| CAGATGCTATTCTCACTGTG+TGG | - | chr3.3:79120505-79120524 | None:intergenic | 45.0% | |
| CAGTCTGAAGGAAACGAAGA+CGG | + | chr3.3:79119568-79119587 | MS.gene31013:CDS | 45.0% | |
| CCCAAATGGGCATAATCATC+AGG | + | chr3.3:79120369-79120388 | MS.gene31013:CDS | 45.0% | |
| CCGATCTATATTACACACGG+CGG | + | chr3.3:79119288-79119307 | MS.gene31013:CDS | 45.0% | |
| CCGCCGTGTGTAATATAGAT+CGG | - | chr3.3:79119291-79119310 | None:intergenic | 45.0% | |
| CGATCTATATTACACACGGC+GGG | + | chr3.3:79119289-79119308 | MS.gene31013:CDS | 45.0% | |
| GAGCTAAAGAGGAGAAGAGA+CGG | + | chr3.3:79119373-79119392 | MS.gene31013:CDS | 45.0% | |
| GCTTCAAGCGAACTACAAAG+AGG | + | chr3.3:79120915-79120934 | MS.gene31013:CDS | 45.0% | |
| GGAGTTGCTACAAAATCTGG+TGG | + | chr3.3:79119811-79119830 | MS.gene31013:CDS | 45.0% | |
| GTGAAGCAGAATCCACAAAG+AGG | + | chr3.3:79120182-79120201 | MS.gene31013:CDS | 45.0% | |
| TCTTCGTTTCCTTCAGACTG+CGG | - | chr3.3:79119568-79119587 | None:intergenic | 45.0% | |
| TGCAGAAAACCACCCCAAAT+GGG | + | chr3.3:79120356-79120375 | MS.gene31013:CDS | 45.0% | |
| TGTAGGAAACTGACATAGGG+AGG | + | chr3.3:79119973-79119992 | MS.gene31013:intron | 45.0% | |
| TTGCAGAAAACCACCCCAAA+TGG | + | chr3.3:79120355-79120374 | MS.gene31013:CDS | 45.0% | |
| TTTGCAAAGCACAAAGGTGG+TGG | + | chr3.3:79121107-79121126 | MS.gene31013:CDS | 45.0% | |
| ! | GCTTCTAGAAGATCCTCAAC+AGG | + | chr3.3:79119663-79119682 | MS.gene31013:CDS | 45.0% |
| ! | TCTTCTCCTCTTTAGCTCAC+CGG | - | chr3.3:79119371-79119390 | None:intergenic | 45.0% |
| !! | AAGAGGGAAAAGCACTCTCA+TGG | + | chr3.3:79120199-79120218 | MS.gene31013:CDS | 45.0% |
| !! | AGAGGGAAAAGCACTCTCAT+GGG | + | chr3.3:79120200-79120219 | MS.gene31013:CDS | 45.0% |
| !! | AGAGTGCTTTTCCCTCTTTG+TGG | - | chr3.3:79120197-79120216 | None:intergenic | 45.0% |
| !! | TTTGGGGTGGTTTTCTGCAA+AGG | - | chr3.3:79120355-79120374 | None:intergenic | 45.0% |
| AAGACCCACCTCCAAAACCA+AGG | + | chr3.3:79120672-79120691 | MS.gene31013:CDS | 50.0% | |
| ATAACGCCGGTGAGCTAAAG+AGG | + | chr3.3:79119362-79119381 | MS.gene31013:CDS | 50.0% | |
| ATTTGCCAGAATTGCGACGG+AGG | + | chr3.3:79119439-79119458 | MS.gene31013:CDS | 50.0% | |
| CCGTCGCAATTCTGGCAAAT+CGG | - | chr3.3:79119439-79119458 | None:intergenic | 50.0% | |
| CCTCTGCTCCTCAGAATGTA+CGG | + | chr3.3:79120720-79120739 | MS.gene31013:intron | 50.0% | |
| GAACAGTCCTAGTCTGAGTC+CGG | + | chr3.3:79119501-79119520 | MS.gene31013:CDS | 50.0% | |
| GAGGAGATAGATCCTTACGG+TGG | + | chr3.3:79119598-79119617 | MS.gene31013:CDS | 50.0% | |
| ! | AAAGGTGGTGGCAGTTCTCA+AGG | + | chr3.3:79121119-79121138 | MS.gene31013:CDS | 50.0% |
| ! | ACATTCTGAGGAGCAGAGGT+AGG | - | chr3.3:79120719-79120738 | None:intergenic | 50.0% |
| ! | ATTCTGAGGAGCAGAGGTAG+GGG | - | chr3.3:79120717-79120736 | None:intergenic | 50.0% |
| ! | CATTCTGAGGAGCAGAGGTA+GGG | - | chr3.3:79120718-79120737 | None:intergenic | 50.0% |
| ! | CCGATTTGCCAGAATTGCGA+CGG | + | chr3.3:79119436-79119455 | MS.gene31013:CDS | 50.0% |
| !! | GGCTTGCTGCTGCAAGAAAA+CGG | + | chr3.3:79120893-79120912 | MS.gene31013:CDS | 50.0% |
| !! | GTTCAGCTTCGGAGGTGTTA+CGG | - | chr3.3:79120622-79120641 | None:intergenic | 50.0% |
| !!! | ATGGCCTTGGTTTTGGAGGT+GGG | - | chr3.3:79120679-79120698 | None:intergenic | 50.0% |
| !!! | TGGTTTTGGTTCAGCTTCGG+AGG | - | chr3.3:79120630-79120649 | None:intergenic | 50.0% |
| AATCGGAGTAACCTCCGTGG+TGG | - | chr3.3:79119422-79119441 | None:intergenic | 55.0% | |
| AGAGGTAGGGGCAGTAACTG+GGG | - | chr3.3:79120705-79120724 | None:intergenic | 55.0% | |
| CAGAGGTAGGGGCAGTAACT+GGG | - | chr3.3:79120706-79120725 | None:intergenic | 55.0% | |
| GAGGAGAAGAGACGGAATCG+TGG | + | chr3.3:79119381-79119400 | MS.gene31013:CDS | 55.0% | |
| GCAAATCGGAGTAACCTCCG+TGG | - | chr3.3:79119425-79119444 | None:intergenic | 55.0% | |
| GTGGTGGCAGTTCTCAAGGA+AGG | + | chr3.3:79121123-79121142 | MS.gene31013:CDS | 55.0% | |
| GTTCTCAAGGAAGGCAGCAC+TGG | + | chr3.3:79121132-79121151 | MS.gene31013:CDS | 55.0% | |
| GTTGACCTCCGTCGCAATTC+TGG | - | chr3.3:79119447-79119466 | None:intergenic | 55.0% | |
| TGTCGTTCCGGACTCAGACT+AGG | - | chr3.3:79119511-79119530 | None:intergenic | 55.0% | |
| TTTCCTTCAGACTGCGGCGT+CGG | - | chr3.3:79119562-79119581 | None:intergenic | 55.0% | |
| TTTGGAGGTGGGTCTTTGCG+AGG | - | chr3.3:79120668-79120687 | None:intergenic | 55.0% | |
| ! | CCGTACATTCTGAGGAGCAG+AGG | - | chr3.3:79120723-79120742 | None:intergenic | 55.0% |
| !! | AGCTTCGGAGGTGTTACGGT+CGG | - | chr3.3:79120618-79120637 | None:intergenic | 55.0% |
| !!! | GATGGCCTTGGTTTTGGAGG+TGG | - | chr3.3:79120680-79120699 | None:intergenic | 55.0% |
| AGGTAGGGGCAGTAACTGGG+GGG | - | chr3.3:79120703-79120722 | None:intergenic | 60.0% | |
| GAGGTAGGGGCAGTAACTGG+GGG | - | chr3.3:79120704-79120723 | None:intergenic | 60.0% | |
| GCAGAGGTAGGGGCAGTAAC+TGG | - | chr3.3:79120707-79120726 | None:intergenic | 60.0% | |
| GCTGACACAGATGGGAGCTC+TGG | + | chr3.3:79120590-79120609 | MS.gene31013:intron | 60.0% | |
| !!! | GGGGATGGCCTTGGTTTTGG+AGG | - | chr3.3:79120683-79120702 | None:intergenic | 60.0% |
| GAGGAGAAGAAGCTCCGCCG+CGG | - | chr3.3:79119540-79119559 | None:intergenic | 65.0% | |
| GCGTCTCTACGCTGCCACCA+CGG | + | chr3.3:79119405-79119424 | MS.gene31013:CDS | 65.0% | |
| GGCGTTATCCTGCGCAGCGA+CGG | - | chr3.3:79119350-79119369 | None:intergenic | 65.0% | |
| GGTAGGGGCAGTAACTGGGG+GGG | - | chr3.3:79120702-79120721 | None:intergenic | 65.0% | |
| GTAACTGGGGGGGATGGCCT+TGG | - | chr3.3:79120692-79120711 | None:intergenic | 65.0% | |
| GTCGCTGCGCAGGATAACGC+CGG | + | chr3.3:79119349-79119368 | MS.gene31013:CDS | 65.0% | |
| TCTCTACGCTGCCACCACGG+AGG | + | chr3.3:79119408-79119427 | MS.gene31013:CDS | 65.0% | |
| !! | GGGGGGGATGGCCTTGGTTT+TGG | - | chr3.3:79120686-79120705 | None:intergenic | 65.0% |
| CCTCCGACGCCGCAGTCTGA+AGG | + | chr3.3:79119556-79119575 | MS.gene31013:CDS | 70.0% | |
| CTGCGCAGCGACGGAGATCG+CGG | - | chr3.3:79119341-79119360 | None:intergenic | 70.0% | |
| GGGGCAGTAACTGGGGGGGA+TGG | - | chr3.3:79120698-79120717 | None:intergenic | 70.0% | |
| ! | CCTTCAGACTGCGGCGTCGG+AGG | - | chr3.3:79119559-79119578 | None:intergenic | 70.0% |
| !! | ACACGGCGGGCGTTGACGTC+TGG | + | chr3.3:79119302-79119321 | MS.gene31013:CDS | 70.0% |
| CCGCGGCGCGGTTGTCGTTC+CGG | - | chr3.3:79119523-79119542 | None:intergenic | 75.0% | |
| CCGGAACGACAACCGCGCCG+CGG | + | chr3.3:79119520-79119539 | MS.gene31013:CDS | 75.0% | |
| CGCGATCTCCGTCGCTGCGC+AGG | + | chr3.3:79119339-79119358 | MS.gene31013:CDS | 75.0% | |
| GAACGACAACCGCGCCGCGG+CGG | + | chr3.3:79119523-79119542 | MS.gene31013:CDS | 75.0% | |
| GAAGAAGCTCCGCCGCGGCG+CGG | - | chr3.3:79119535-79119554 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79119271 | 79121157 | 79119271 | ID=MS.gene31013 |
| chr3.3 | mRNA | 79119271 | 79121157 | 79119271 | ID=MS.gene31013.t1;Parent=MS.gene31013 |
| chr3.3 | exon | 79119271 | 79119684 | 79119271 | ID=MS.gene31013.t1.exon1;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79119271 | 79119684 | 79119271 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| chr3.3 | exon | 79119794 | 79119862 | 79119794 | ID=MS.gene31013.t1.exon2;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79119794 | 79119862 | 79119794 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| chr3.3 | exon | 79119978 | 79120060 | 79119978 | ID=MS.gene31013.t1.exon3;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79119978 | 79120060 | 79119978 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| chr3.3 | exon | 79120154 | 79120221 | 79120154 | ID=MS.gene31013.t1.exon4;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79120154 | 79120221 | 79120154 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| chr3.3 | exon | 79120338 | 79120390 | 79120338 | ID=MS.gene31013.t1.exon5;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79120338 | 79120390 | 79120338 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| chr3.3 | exon | 79120475 | 79120508 | 79120475 | ID=MS.gene31013.t1.exon6;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79120475 | 79120508 | 79120475 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| chr3.3 | exon | 79120600 | 79120736 | 79120600 | ID=MS.gene31013.t1.exon7;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79120600 | 79120736 | 79120600 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| chr3.3 | exon | 79120853 | 79120946 | 79120853 | ID=MS.gene31013.t1.exon8;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79120853 | 79120946 | 79120853 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| chr3.3 | exon | 79121036 | 79121157 | 79121036 | ID=MS.gene31013.t1.exon9;Parent=MS.gene31013.t1 |
| chr3.3 | CDS | 79121036 | 79121157 | 79121036 | ID=cds.MS.gene31013.t1;Parent=MS.gene31013.t1 |
| Gene Sequence |
| Protein sequence |
