Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31084.t1 | XP_003597448.2 | 93.3 | 536 | 19 | 6 | 1 | 534 | 1 | 521 | 1.50E-277 | 964.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31084.t1 | Q5YGP7 | 60.8 | 592 | 150 | 26 | 1 | 534 | 1 | 568 | 3.1e-162 | 573.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31084.t1 | G7IUD4 | 93.3 | 536 | 19 | 6 | 1 | 534 | 1 | 521 | 1.1e-277 | 964.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31084.t1 | TF | AP2/ERF-AP2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054277 | MS.gene31084 | 0.802017 | 6.85E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31084.t1 | MTR_2g098180 | 91.791 | 536 | 27 | 6 | 1 | 534 | 1 | 521 | 0.0 | 966 |
MS.gene31084.t1 | MTR_4g065370 | 64.695 | 558 | 150 | 20 | 4 | 534 | 3 | 540 | 0.0 | 617 |
MS.gene31084.t1 | MTR_7g080460 | 83.486 | 218 | 34 | 2 | 153 | 370 | 238 | 453 | 9.95e-130 | 394 |
MS.gene31084.t1 | MTR_4g127930 | 79.630 | 216 | 43 | 1 | 164 | 379 | 148 | 362 | 2.02e-123 | 372 |
MS.gene31084.t1 | MTR_8g020510 | 50.483 | 414 | 119 | 12 | 11 | 362 | 42 | 431 | 1.16e-116 | 357 |
MS.gene31084.t1 | MTR_5g031880 | 51.790 | 419 | 141 | 12 | 4 | 374 | 11 | 416 | 3.77e-110 | 338 |
MS.gene31084.t1 | MTR_3g103460 | 65.079 | 252 | 63 | 4 | 133 | 365 | 251 | 496 | 7.41e-108 | 336 |
MS.gene31084.t1 | MTR_5g015070 | 77.436 | 195 | 43 | 1 | 171 | 365 | 245 | 438 | 2.91e-106 | 329 |
MS.gene31084.t1 | MTR_1g017400 | 64.639 | 263 | 66 | 7 | 133 | 376 | 253 | 507 | 5.06e-106 | 332 |
MS.gene31084.t1 | MTR_4g097520 | 72.642 | 212 | 54 | 2 | 166 | 377 | 301 | 508 | 4.85e-104 | 326 |
MS.gene31084.t1 | MTR_8g068510 | 47.619 | 378 | 132 | 12 | 3 | 374 | 6 | 323 | 8.25e-97 | 300 |
MS.gene31084.t1 | MTR_4g130270 | 69.822 | 169 | 51 | 0 | 174 | 342 | 46 | 214 | 4.13e-83 | 263 |
MS.gene31084.t1 | MTR_7g009410 | 56.881 | 218 | 86 | 3 | 174 | 387 | 64 | 277 | 4.73e-76 | 246 |
MS.gene31084.t1 | MTR_6g011490 | 61.979 | 192 | 66 | 3 | 179 | 368 | 65 | 251 | 2.09e-74 | 241 |
MS.gene31084.t1 | MTR_8g044070 | 63.483 | 178 | 62 | 1 | 174 | 351 | 54 | 228 | 9.97e-73 | 238 |
MS.gene31084.t1 | MTR_2g460730 | 65.000 | 180 | 57 | 2 | 163 | 342 | 38 | 211 | 3.34e-71 | 232 |
MS.gene31084.t1 | MTR_4g007770 | 67.456 | 169 | 52 | 1 | 174 | 342 | 35 | 200 | 1.14e-70 | 229 |
MS.gene31084.t1 | MTR_8g468920 | 66.860 | 172 | 54 | 1 | 171 | 342 | 65 | 233 | 2.36e-69 | 228 |
MS.gene31084.t1 | MTR_8g044040 | 63.314 | 169 | 59 | 1 | 174 | 342 | 55 | 220 | 5.94e-66 | 219 |
MS.gene31084.t1 | MTR_5g016810 | 48.469 | 196 | 88 | 4 | 150 | 343 | 122 | 306 | 2.72e-41 | 155 |
MS.gene31084.t1 | MTR_4g094868 | 48.000 | 200 | 83 | 5 | 179 | 368 | 177 | 365 | 1.14e-40 | 154 |
MS.gene31084.t1 | MTR_4g094868 | 52.727 | 165 | 67 | 3 | 179 | 343 | 177 | 330 | 1.39e-40 | 154 |
MS.gene31084.t1 | MTR_2g093060 | 46.875 | 192 | 89 | 4 | 154 | 343 | 108 | 288 | 1.77e-39 | 150 |
MS.gene31084.t1 | MTR_7g100590 | 50.303 | 165 | 71 | 3 | 179 | 343 | 140 | 293 | 1.80e-39 | 150 |
MS.gene31084.t1 | MTR_2g093060 | 46.875 | 192 | 89 | 4 | 154 | 343 | 108 | 288 | 1.86e-39 | 150 |
MS.gene31084.t1 | MTR_4g061200 | 43.062 | 209 | 107 | 4 | 135 | 343 | 89 | 285 | 1.10e-38 | 146 |
MS.gene31084.t1 | MTR_5g016810 | 46.535 | 202 | 89 | 5 | 150 | 343 | 122 | 312 | 1.40e-38 | 148 |
MS.gene31084.t1 | MTR_4g061200 | 43.062 | 209 | 107 | 4 | 135 | 343 | 89 | 285 | 3.71e-38 | 146 |
MS.gene31084.t1 | MTR_7g091390 | 57.252 | 131 | 48 | 2 | 173 | 303 | 55 | 177 | 4.19e-37 | 142 |
MS.gene31084.t1 | MTR_4g094868 | 52.055 | 146 | 64 | 2 | 198 | 343 | 35 | 174 | 7.91e-34 | 132 |
MS.gene31084.t1 | MTR_7g061190 | 50.746 | 134 | 65 | 1 | 210 | 343 | 3 | 135 | 2.90e-32 | 121 |
MS.gene31084.t1 | MTR_2g093060 | 42.708 | 192 | 82 | 5 | 154 | 343 | 108 | 273 | 5.75e-31 | 125 |
MS.gene31084.t1 | MTR_4g061200 | 39.234 | 209 | 100 | 5 | 135 | 343 | 89 | 270 | 4.91e-30 | 121 |
MS.gene31084.t1 | MTR_4g061200 | 39.234 | 209 | 100 | 5 | 135 | 343 | 89 | 270 | 1.19e-29 | 122 |
MS.gene31084.t1 | MTR_7g091390 | 54.945 | 91 | 36 | 1 | 213 | 303 | 4 | 89 | 1.52e-19 | 90.1 |
MS.gene31084.t1 | MTR_3g090510 | 44.860 | 107 | 58 | 1 | 215 | 321 | 162 | 267 | 1.59e-17 | 85.1 |
MS.gene31084.t1 | MTR_7g060560 | 42.991 | 107 | 59 | 2 | 215 | 321 | 155 | 259 | 1.20e-15 | 79.3 |
MS.gene31084.t1 | MTR_1g049140 | 39.837 | 123 | 63 | 3 | 175 | 297 | 134 | 245 | 5.35e-14 | 72.4 |
MS.gene31084.t1 | MTR_1g049140 | 39.837 | 123 | 63 | 3 | 175 | 297 | 134 | 245 | 7.98e-14 | 73.6 |
MS.gene31084.t1 | MTR_1g049140 | 39.837 | 123 | 63 | 3 | 175 | 297 | 134 | 245 | 3.44e-13 | 71.2 |
MS.gene31084.t1 | MTR_5g075570 | 39.423 | 104 | 59 | 2 | 271 | 371 | 114 | 216 | 5.13e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31084.t1 | AT1G51190 | 59.167 | 600 | 147 | 27 | 1 | 534 | 1 | 568 | 0.0 | 593 |
MS.gene31084.t1 | AT3G20840 | 57.616 | 604 | 156 | 26 | 1 | 534 | 1 | 574 | 0.0 | 578 |
MS.gene31084.t1 | AT5G17430 | 83.333 | 210 | 32 | 2 | 157 | 366 | 129 | 335 | 1.78e-125 | 377 |
MS.gene31084.t1 | AT5G17430 | 83.333 | 210 | 32 | 2 | 157 | 366 | 191 | 397 | 4.07e-125 | 379 |
MS.gene31084.t1 | AT5G57390 | 84.000 | 200 | 31 | 1 | 158 | 357 | 65 | 263 | 7.45e-124 | 370 |
MS.gene31084.t1 | AT5G57390 | 84.000 | 200 | 31 | 1 | 158 | 357 | 183 | 381 | 1.26e-122 | 371 |
MS.gene31084.t1 | AT1G72570 | 63.566 | 258 | 74 | 2 | 116 | 353 | 141 | 398 | 4.56e-111 | 337 |
MS.gene31084.t1 | AT4G37750 | 79.695 | 197 | 39 | 1 | 166 | 362 | 271 | 466 | 3.62e-109 | 337 |
MS.gene31084.t1 | AT5G10510 | 80.000 | 215 | 39 | 3 | 166 | 380 | 218 | 428 | 1.31e-108 | 335 |
MS.gene31084.t1 | AT5G10510 | 80.000 | 215 | 39 | 3 | 166 | 380 | 218 | 428 | 1.31e-108 | 335 |
MS.gene31084.t1 | AT5G10510 | 80.000 | 215 | 39 | 3 | 166 | 380 | 241 | 451 | 1.83e-108 | 335 |
MS.gene31084.t1 | AT5G10510 | 80.000 | 215 | 39 | 3 | 166 | 380 | 256 | 466 | 2.73e-108 | 335 |
MS.gene31084.t1 | AT5G10510 | 80.000 | 215 | 39 | 3 | 166 | 380 | 256 | 466 | 2.73e-108 | 335 |
MS.gene31084.t1 | AT5G65510 | 69.106 | 246 | 63 | 4 | 137 | 370 | 120 | 364 | 1.30e-107 | 329 |
MS.gene31084.t1 | AT5G65510 | 69.106 | 246 | 63 | 4 | 137 | 370 | 178 | 422 | 2.04e-107 | 330 |
MS.gene31084.t1 | AT5G65510 | 69.106 | 246 | 63 | 4 | 137 | 370 | 178 | 422 | 2.04e-107 | 330 |
MS.gene31084.t1 | AT5G10510 | 79.070 | 215 | 38 | 4 | 166 | 380 | 218 | 425 | 3.03e-105 | 326 |
MS.gene31084.t1 | AT5G10510 | 72.766 | 235 | 40 | 5 | 166 | 380 | 256 | 486 | 9.32e-103 | 322 |
MS.gene31084.t1 | AT5G65510 | 50.508 | 295 | 104 | 7 | 60 | 312 | 13 | 307 | 2.31e-88 | 275 |
MS.gene31084.t1 | AT3G54320 | 65.089 | 169 | 59 | 0 | 174 | 342 | 61 | 229 | 1.97e-67 | 224 |
MS.gene31084.t1 | AT3G54320 | 65.089 | 169 | 59 | 0 | 174 | 342 | 61 | 229 | 2.84e-67 | 224 |
MS.gene31084.t1 | AT1G16060 | 56.604 | 212 | 90 | 1 | 133 | 342 | 11 | 222 | 4.85e-65 | 215 |
MS.gene31084.t1 | AT1G79700 | 57.820 | 211 | 77 | 1 | 174 | 372 | 48 | 258 | 4.70e-64 | 212 |
MS.gene31084.t1 | AT1G79700 | 54.502 | 211 | 74 | 2 | 174 | 372 | 48 | 248 | 2.10e-56 | 191 |
MS.gene31084.t1 | AT3G54320 | 54.118 | 170 | 73 | 2 | 213 | 378 | 34 | 202 | 4.29e-47 | 168 |
MS.gene31084.t1 | AT3G54320 | 54.118 | 170 | 73 | 2 | 213 | 378 | 34 | 202 | 4.29e-47 | 168 |
MS.gene31084.t1 | AT1G79700 | 54.545 | 176 | 68 | 1 | 213 | 376 | 11 | 186 | 2.69e-43 | 154 |
MS.gene31084.t1 | AT1G16060 | 65.414 | 133 | 46 | 0 | 210 | 342 | 20 | 152 | 3.85e-42 | 152 |
MS.gene31084.t1 | AT1G79700 | 53.714 | 175 | 69 | 1 | 214 | 376 | 6 | 180 | 4.14e-42 | 150 |
MS.gene31084.t1 | AT4G36920 | 47.716 | 197 | 92 | 3 | 158 | 354 | 111 | 296 | 1.45e-41 | 155 |
MS.gene31084.t1 | AT4G36920 | 47.716 | 197 | 92 | 3 | 158 | 354 | 111 | 296 | 1.45e-41 | 155 |
MS.gene31084.t1 | AT5G67180 | 41.126 | 231 | 117 | 4 | 179 | 401 | 97 | 316 | 1.79e-40 | 150 |
MS.gene31084.t1 | AT2G41710 | 57.576 | 132 | 51 | 1 | 171 | 302 | 63 | 189 | 1.08e-39 | 149 |
MS.gene31084.t1 | AT2G41710 | 57.576 | 132 | 51 | 1 | 171 | 302 | 63 | 189 | 1.60e-39 | 150 |
MS.gene31084.t1 | AT5G67180 | 46.354 | 192 | 92 | 3 | 179 | 370 | 97 | 277 | 9.96e-39 | 144 |
MS.gene31084.t1 | AT2G28550 | 48.588 | 177 | 80 | 3 | 179 | 355 | 154 | 319 | 1.91e-38 | 147 |
MS.gene31084.t1 | AT5G67180 | 48.000 | 175 | 80 | 3 | 179 | 353 | 97 | 260 | 6.78e-38 | 141 |
MS.gene31084.t1 | AT2G41710 | 55.474 | 137 | 51 | 2 | 171 | 302 | 63 | 194 | 2.08e-37 | 143 |
MS.gene31084.t1 | AT2G41710 | 45.509 | 167 | 51 | 2 | 171 | 302 | 63 | 224 | 4.74e-33 | 131 |
MS.gene31084.t1 | AT2G28550 | 48.571 | 140 | 61 | 3 | 179 | 318 | 154 | 282 | 3.67e-30 | 121 |
MS.gene31084.t1 | AT2G28550 | 44.068 | 177 | 73 | 4 | 179 | 355 | 154 | 304 | 4.05e-30 | 123 |
MS.gene31084.t1 | AT1G16060 | 68.182 | 88 | 28 | 0 | 255 | 342 | 1 | 88 | 8.92e-30 | 116 |
MS.gene31084.t1 | AT1G16060 | 68.182 | 88 | 28 | 0 | 255 | 342 | 1 | 88 | 8.92e-30 | 116 |
MS.gene31084.t1 | AT1G16060 | 68.182 | 88 | 28 | 0 | 255 | 342 | 1 | 88 | 8.92e-30 | 116 |
MS.gene31084.t1 | AT1G16060 | 68.182 | 88 | 28 | 0 | 255 | 342 | 1 | 88 | 8.92e-30 | 116 |
MS.gene31084.t1 | AT3G54320 | 67.045 | 88 | 29 | 0 | 255 | 342 | 1 | 88 | 1.41e-28 | 115 |
MS.gene31084.t1 | AT5G67180 | 46.897 | 145 | 66 | 3 | 179 | 323 | 97 | 230 | 1.59e-28 | 114 |
MS.gene31084.t1 | AT2G28550 | 47.619 | 126 | 55 | 3 | 179 | 304 | 154 | 268 | 1.62e-25 | 106 |
MS.gene31084.t1 | AT2G28550 | 47.619 | 126 | 55 | 3 | 179 | 304 | 154 | 268 | 1.62e-25 | 106 |
MS.gene31084.t1 | AT2G39250 | 41.071 | 112 | 56 | 2 | 179 | 290 | 109 | 210 | 1.62e-22 | 97.1 |
MS.gene31084.t1 | AT2G39250 | 41.071 | 112 | 56 | 2 | 179 | 290 | 109 | 210 | 4.45e-22 | 97.8 |
MS.gene31084.t1 | AT2G28550 | 43.165 | 139 | 63 | 2 | 213 | 351 | 12 | 134 | 3.69e-21 | 94.4 |
MS.gene31084.t1 | AT5G60120 | 43.411 | 129 | 62 | 3 | 175 | 303 | 157 | 274 | 1.40e-18 | 89.0 |
MS.gene31084.t1 | AT5G60120 | 43.411 | 129 | 62 | 3 | 175 | 303 | 157 | 274 | 1.42e-18 | 89.0 |
MS.gene31084.t1 | AT5G60120 | 43.411 | 129 | 62 | 3 | 175 | 303 | 157 | 274 | 2.17e-18 | 88.6 |
MS.gene31084.t1 | AT5G60120 | 43.411 | 129 | 62 | 3 | 175 | 303 | 157 | 274 | 2.62e-18 | 87.8 |
MS.gene31084.t1 | AT5G60120 | 43.411 | 129 | 62 | 3 | 175 | 303 | 157 | 274 | 2.62e-18 | 87.8 |
MS.gene31084.t1 | AT5G60120 | 43.411 | 129 | 62 | 3 | 175 | 303 | 157 | 274 | 2.62e-18 | 87.8 |
MS.gene31084.t1 | AT3G54990 | 44.340 | 106 | 49 | 2 | 179 | 284 | 123 | 218 | 1.18e-17 | 83.2 |
MS.gene31084.t1 | AT3G54990 | 44.340 | 106 | 49 | 2 | 179 | 284 | 123 | 218 | 2.82e-17 | 84.0 |
MS.gene31084.t1 | AT1G16060 | 75.862 | 58 | 14 | 0 | 285 | 342 | 9 | 66 | 3.17e-17 | 80.5 |
Find 113 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATTAAATTACCATGATTT+TGG | 0.135577 | 2.4:-5862563 | None:intergenic |
CTCTAGAATCTTCTAGAAAA+AGG | 0.178651 | 2.4:+5864985 | MS.gene31084:CDS |
TGTTGTTCAAACTGCATTAA+AGG | 0.189535 | 2.4:-5865092 | None:intergenic |
TGAGTTATTCATTTCATTAT+AGG | 0.209836 | 2.4:-5862808 | None:intergenic |
TGAAATTAATTACCTTCTTA+TGG | 0.225596 | 2.4:-5864027 | None:intergenic |
AATGGTGGTGGAGGGTATAT+TGG | 0.226918 | 2.4:+5865287 | MS.gene31084:CDS |
GACATGCCTTCCGGAAATTA+TGG | 0.230633 | 2.4:+5865407 | MS.gene31084:CDS |
CACGATATATTGATGTTCTT+TGG | 0.247413 | 2.4:-5863067 | None:intergenic |
GATCTTTACTTAGGAACTTT+TGG | 0.251202 | 2.4:+5864451 | MS.gene31084:CDS |
AATGACTGCAGATTATTGTT+AGG | 0.275259 | 2.4:-5862933 | None:intergenic |
TTTGCAGCACCTCCTCCTAT+TGG | 0.289449 | 2.4:-5864942 | None:intergenic |
TTGTATCCTACTTGAATTTG+AGG | 0.342778 | 2.4:-5865057 | None:intergenic |
TTGCAGCACCTCCTCCTATT+GGG | 0.343891 | 2.4:-5864941 | None:intergenic |
TGAATATGGGCTCAAATAAC+TGG | 0.357964 | 2.4:+5862415 | None:intergenic |
GTTGTTCAAACTGCATTAAA+GGG | 0.376527 | 2.4:-5865091 | None:intergenic |
ATGGTGGTGGAGGGTATATT+GGG | 0.377237 | 2.4:+5865288 | MS.gene31084:CDS |
AGAAGAGCTTTGGATACCTT+TGG | 0.392118 | 2.4:+5863044 | MS.gene31084:CDS |
AAGGTATCCAAAGCTCTTCT+AGG | 0.393713 | 2.4:-5863041 | None:intergenic |
TGACTGTCCTTCCCTTCTAC+AGG | 0.397204 | 2.4:-5863426 | None:intergenic |
GTTGATTATGACATGCCTTC+CGG | 0.401891 | 2.4:+5865398 | MS.gene31084:CDS |
CGACCAACCTCCATAATTTC+CGG | 0.402775 | 2.4:-5865417 | None:intergenic |
GAAGGTATGAAGCTCACCTT+TGG | 0.402885 | 2.4:+5863396 | MS.gene31084:CDS |
TTGGAATGAGTTTGAATTGT+GGG | 0.408840 | 2.4:+5865324 | MS.gene31084:CDS |
GGAAATTATGGAGGTTGGTC+GGG | 0.425370 | 2.4:+5865419 | MS.gene31084:CDS |
GGTATATTGGGAATATGAAT+GGG | 0.425972 | 2.4:+5865300 | MS.gene31084:CDS |
ATTTAGCAGCACTAAAGTAC+TGG | 0.427804 | 2.4:+5863782 | MS.gene31084:CDS |
CTTGAGTACTACTATCATAT+AGG | 0.428966 | 2.4:-5865127 | None:intergenic |
CCAAGAAAATCTGCAACCTT+TGG | 0.429600 | 2.4:-5862744 | None:intergenic |
CAAGAGATGATAGCACTTGC+AGG | 0.432508 | 2.4:+5865011 | MS.gene31084:CDS |
GGAAGATGGCAAGCAAGAAT+TGG | 0.433856 | 2.4:+5864409 | MS.gene31084:CDS |
GGGTATATTGGGAATATGAA+TGG | 0.434077 | 2.4:+5865299 | MS.gene31084:CDS |
AAAATCTCTATAGACATAGA+TGG | 0.436081 | 2.4:+5863369 | MS.gene31084:intron |
GCAGTCATTGACATTATCAA+TGG | 0.442110 | 2.4:+5862947 | MS.gene31084:CDS |
AGTTGTGACTACTATTCATA+AGG | 0.442739 | 2.4:-5862710 | None:intergenic |
TTTGGGATAATACCTGTAGA+AGG | 0.444301 | 2.4:+5863414 | MS.gene31084:CDS |
GAAAGTAACACTCTCCCAAT+AGG | 0.444618 | 2.4:+5864927 | MS.gene31084:CDS |
ATGACTGCAGATTATTGTTA+GGG | 0.445990 | 2.4:-5862932 | None:intergenic |
GAAACCCCTTTCCAAAATCA+TGG | 0.451693 | 2.4:+5862552 | MS.gene31084:CDS |
GGAGGAAGTTGCATATGTTA+AGG | 0.454428 | 2.4:+5865376 | MS.gene31084:CDS |
CTCTATAGACATAGATGGAC+AGG | 0.457496 | 2.4:+5863374 | MS.gene31084:intron |
GGAAACAAAGATCTTTACTT+AGG | 0.458638 | 2.4:+5864442 | MS.gene31084:CDS |
TGCAACCTTTGGAACTTCGT+TGG | 0.461237 | 2.4:-5862733 | None:intergenic |
TGCAACACCTAGAAGAGCTT+TGG | 0.461962 | 2.4:+5863034 | MS.gene31084:CDS |
GGATGATGAGTTGGAGAAAG+TGG | 0.482295 | 2.4:-5862447 | None:intergenic |
CGGAAATTATGGAGGTTGGT+CGG | 0.486285 | 2.4:+5865418 | MS.gene31084:CDS |
ATTCATGTCAAAATTTGTTA+CGG | 0.487169 | 2.4:-5864880 | None:intergenic |
TGTGGGAATAACAATGTTGT+TGG | 0.494329 | 2.4:+5865341 | MS.gene31084:CDS |
TTGCTTGCCATCTTCCATGT+TGG | 0.497961 | 2.4:-5864402 | None:intergenic |
GCAAGAATTGGCCGAGTCGC+GGG | 0.498025 | 2.4:+5864421 | MS.gene31084:CDS |
GATCTTTGTTTCCCGCGACT+CGG | 0.498889 | 2.4:-5864432 | None:intergenic |
ATTGGGAATATGAATGGGGT+TGG | 0.503650 | 2.4:+5865305 | MS.gene31084:CDS |
AATTTGTTGCCGCCATAAGA+AGG | 0.503705 | 2.4:+5864015 | MS.gene31084:CDS |
ATGGGTGTGATAAACAATAA+TGG | 0.504881 | 2.4:+5865269 | MS.gene31084:CDS |
GTGATAAACAATAATGGTGG+TGG | 0.510822 | 2.4:+5865275 | MS.gene31084:CDS |
AAGGTATGAAGCTCACCTTT+GGG | 0.511515 | 2.4:+5863397 | MS.gene31084:CDS |
AGCAAGAATTGGCCGAGTCG+CGG | 0.525105 | 2.4:+5864420 | MS.gene31084:CDS |
GGCATCACCAACATGGAAGA+TGG | 0.526869 | 2.4:+5864395 | MS.gene31084:intron |
TATTGATGTTCTTTGGCCAA+AGG | 0.530682 | 2.4:-5863060 | None:intergenic |
TGAAGATGAGGTGGTAATGA+AGG | 0.530699 | 2.4:-5862468 | None:intergenic |
CAATATATCGTGGTGTAACA+AGG | 0.532312 | 2.4:+5863078 | MS.gene31084:CDS |
AATGGGAAGTGGTACTACTA+AGG | 0.536189 | 2.4:+5862965 | MS.gene31084:CDS |
TAATTACTTGTTCATGTCGC+CGG | 0.538221 | 2.4:+5862848 | MS.gene31084:CDS |
GGTGCAGATGCTTCAAATGC+TGG | 0.539284 | 2.4:+5865440 | MS.gene31084:CDS |
AGGGAAGGACAGTCAAGAAA+AGG | 0.539990 | 2.4:+5863434 | MS.gene31084:CDS |
CAGTCATTGACATTATCAAT+GGG | 0.548009 | 2.4:+5862948 | MS.gene31084:CDS |
CTTCCGGAAATTATGGAGGT+TGG | 0.549682 | 2.4:+5865414 | MS.gene31084:CDS |
ATAAACAATAATGGTGGTGG+AGG | 0.561321 | 2.4:+5865278 | MS.gene31084:CDS |
ACACCCATGTTCATCAAACT+CGG | 0.561457 | 2.4:-5865254 | None:intergenic |
TTTAGCAGCACTAAAGTACT+GGG | 0.564177 | 2.4:+5863783 | MS.gene31084:CDS |
ATTAGTCAATGACAACATGT+TGG | 0.573305 | 2.4:+5862530 | MS.gene31084:CDS |
TCAGATCAGTAACTATGAGA+AGG | 0.584536 | 2.4:+5863959 | MS.gene31084:intron |
GGTAATGAAGGATGATGAGT+TGG | 0.585569 | 2.4:-5862456 | None:intergenic |
TGAGTTGGTTGAAGATGAGG+TGG | 0.591775 | 2.4:-5862477 | None:intergenic |
GTTGGAATGAGTTTGAATTG+TGG | 0.592550 | 2.4:+5865323 | MS.gene31084:CDS |
TTCTACAGGTATTATCCCAA+AGG | 0.592746 | 2.4:-5863412 | None:intergenic |
TTGACATTATCAATGGGAAG+TGG | 0.593497 | 2.4:+5862954 | MS.gene31084:CDS |
AACACTCTCCCAATAGGAGG+AGG | 0.597862 | 2.4:+5864933 | MS.gene31084:CDS |
AATTAATTACCTTCTTATGG+CGG | 0.598414 | 2.4:-5864024 | None:intergenic |
TCAAGTAGGATACAATTACA+AGG | 0.603511 | 2.4:+5865065 | MS.gene31084:CDS |
GATAATACCTGTAGAAGGGA+AGG | 0.608725 | 2.4:+5863419 | MS.gene31084:CDS |
GAATATCCTCAAATTCAAGT+AGG | 0.609340 | 2.4:+5865051 | MS.gene31084:CDS |
TGGTGATGATGAGATTGAGT+TGG | 0.609907 | 2.4:-5862492 | None:intergenic |
CACCCATGTTCATCAAACTC+GGG | 0.610304 | 2.4:-5865253 | None:intergenic |
CAATGTATCGTGGAGTCACA+AGG | 0.612069 | 2.4:+5864236 | MS.gene31084:CDS |
CAGTCAAGAAAAGGTCGTCA+AGG | 0.612537 | 2.4:+5863443 | MS.gene31084:CDS |
TTGGGATAATACCTGTAGAA+GGG | 0.613409 | 2.4:+5863415 | MS.gene31084:CDS |
TAACCCGAGTTTGATGAACA+TGG | 0.613738 | 2.4:+5865250 | MS.gene31084:CDS |
CTAATGTCCCAAGAGAAAAG+TGG | 0.615719 | 2.4:-5862512 | None:intergenic |
ATAAATTGCAGAAAGAGCAG+TGG | 0.617630 | 2.4:+5864196 | MS.gene31084:intron |
GATTGAGTTGGTTGAAGATG+AGG | 0.620962 | 2.4:-5862480 | None:intergenic |
CAACTCCAACGAAGTTCCAA+AGG | 0.625333 | 2.4:+5862728 | MS.gene31084:CDS |
GTATATTGGGAATATGAATG+GGG | 0.630081 | 2.4:+5865301 | MS.gene31084:CDS |
AGTAACACTCTCCCAATAGG+AGG | 0.637219 | 2.4:+5864930 | MS.gene31084:CDS |
ATCACCACTAGTTTCACATG+TGG | 0.641644 | 2.4:-5862991 | None:intergenic |
AACCCGAGTTTGATGAACAT+GGG | 0.646250 | 2.4:+5865251 | MS.gene31084:CDS |
TAAACAATAATGGTGGTGGA+GGG | 0.654154 | 2.4:+5865279 | MS.gene31084:CDS |
ATGCCTTCCGGAAATTATGG+AGG | 0.657477 | 2.4:+5865410 | MS.gene31084:CDS |
CAACCTCCATAATTTCCGGA+AGG | 0.657620 | 2.4:-5865413 | None:intergenic |
GATTCCACATGTGAAACTAG+TGG | 0.661227 | 2.4:+5862987 | MS.gene31084:CDS |
AGGGGTGCATCAATGTATCG+TGG | 0.662033 | 2.4:+5864226 | MS.gene31084:CDS |
ACTTACGGGAAAGTTTGTAG+TGG | 0.663407 | 2.4:-5863815 | None:intergenic |
CAGTTACAACAACAACAAAG+TGG | 0.664261 | 2.4:+5865191 | MS.gene31084:CDS |
ATAGCTGCAATCAAGTTCAG+AGG | 0.664893 | 2.4:+5864849 | MS.gene31084:CDS |
CAAAGAACATCAATATATCG+TGG | 0.666274 | 2.4:+5863068 | MS.gene31084:CDS |
ATAGACATAGATGGACAGGA+AGG | 0.674197 | 2.4:+5863378 | MS.gene31084:intron |
TTACAACAACAACAAAGTGG+AGG | 0.678223 | 2.4:+5865194 | MS.gene31084:CDS |
TGTTGGTGAACATGCAGCGG+AGG | 0.683901 | 2.4:+5865358 | MS.gene31084:CDS |
GGAGGATTCTACAACTACGA+TGG | 0.689293 | 2.4:+5865212 | MS.gene31084:CDS |
TAGCAGCACTAAAGTACTGG+GGG | 0.691402 | 2.4:+5863785 | MS.gene31084:CDS |
ATGCTGGTGTTCTTACAATG+TGG | 0.696484 | 2.4:+5865456 | MS.gene31084:CDS |
TGTTGTTGGTGAACATGCAG+CGG | 0.711969 | 2.4:+5865355 | MS.gene31084:CDS |
GGTGTGATAAACAATAATGG+TGG | 0.722605 | 2.4:+5865272 | MS.gene31084:CDS |
TTAGCAGCACTAAAGTACTG+GGG | 0.731804 | 2.4:+5863784 | MS.gene31084:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGATTTATATTTATATATG+TGG | - | chr2.4:5862645-5862664 | None:intergenic | 10.0% |
!! | AATATTTATGTTCAATATAT+TGG | + | chr2.4:5863690-5863709 | MS.gene31084:intron | 10.0% |
!! | ACTAAATAAAAAGAAAATTA+AGG | - | chr2.4:5863519-5863538 | None:intergenic | 10.0% |
!! | CAATTAATTAATTTAACATT+AGG | - | chr2.4:5863935-5863954 | None:intergenic | 10.0% |
!! | CTAAATAAAAAGAAAATTAA+GGG | - | chr2.4:5863518-5863537 | None:intergenic | 10.0% |
!!! | AATATTGGAATATTTTTTAT+AGG | + | chr2.4:5864795-5864814 | MS.gene31084:intron | 10.0% |
!!! | GATGAAATTTTTTTTTTTTT+AGG | - | chr2.4:5864167-5864186 | None:intergenic | 10.0% |
!!! | TATATATTTATCGTTATTTT+AGG | + | chr2.4:5864374-5864393 | MS.gene31084:intron | 10.0% |
!!! | TGAAATTGTTTTTTTTTTTT+TGG | - | chr2.4:5864590-5864609 | None:intergenic | 10.0% |
!!! | TGAAATTTTTTTTTTTTTAG+GGG | - | chr2.4:5864165-5864184 | None:intergenic | 10.0% |
!! | AGAACAAAAAAAAAATTAAG+AGG | - | chr2.4:5863659-5863678 | None:intergenic | 15.0% |
!! | TAAATCTTTATGCTATATAT+AGG | + | chr2.4:5863721-5863740 | MS.gene31084:intron | 15.0% |
!! | TATATTGAACATAAATATTC+TGG | - | chr2.4:5863689-5863708 | None:intergenic | 15.0% |
!! | TCAAAATTTAAAAGATTTGT+TGG | - | chr2.4:5864539-5864558 | None:intergenic | 15.0% |
!! | TTAACAAAATTATAAATCGT+TGG | - | chr2.4:5863253-5863272 | None:intergenic | 15.0% |
!! | TTAATTAATTTAACATTAGG+TGG | - | chr2.4:5863932-5863951 | None:intergenic | 15.0% |
!!! | GAATTTTTATTCATCTATAA+TGG | - | chr2.4:5864703-5864722 | None:intergenic | 15.0% |
!!! | GATGTTTTCAAATTTATAAA+TGG | - | chr2.4:5864653-5864672 | None:intergenic | 15.0% |
!!! | TAAAAAAAAAGTATATCTCA+TGG | - | chr2.4:5864071-5864090 | None:intergenic | 15.0% |
!!! | TCTTAATTTTTTTTTTGTTC+TGG | + | chr2.4:5863658-5863677 | MS.gene31084:intron | 15.0% |
!! | ACCATTTATTGTTTATACTA+AGG | + | chr2.4:5863486-5863505 | MS.gene31084:intron | 20.0% |
!! | ACCTTAGTATAAACAATAAA+TGG | - | chr2.4:5863490-5863509 | None:intergenic | 20.0% |
!! | AGCTTAATTTAATCAATAGT+AGG | - | chr2.4:5864278-5864297 | None:intergenic | 20.0% |
!! | ATTGAGATGATAAATAATGA+AGG | - | chr2.4:5864630-5864649 | None:intergenic | 20.0% |
!! | TGAAATTAATTACCTTCTTA+TGG | - | chr2.4:5864030-5864049 | None:intergenic | 20.0% |
!! | TGAGTTATTCATTTCATTAT+AGG | - | chr2.4:5862811-5862830 | None:intergenic | 20.0% |
!! | TTGAGATGATAAATAATGAA+GGG | - | chr2.4:5864629-5864648 | None:intergenic | 20.0% |
!!! | AATATTTTTTATAGGTACTG+AGG | + | chr2.4:5864803-5864822 | MS.gene31084:intron | 20.0% |
!!! | AATTTTGTTAAGCTGTTTAA+TGG | + | chr2.4:5863262-5863281 | MS.gene31084:intron | 20.0% |
!!! | ATTCATGTCAAAATTTGTTA+CGG | - | chr2.4:5864883-5864902 | None:intergenic | 20.0% |
!!! | ATTTTCATTTTTCTTCATCT+TGG | + | chr2.4:5863564-5863583 | MS.gene31084:intron | 20.0% |
!!! | CTTTTTTAACTGTCATTTTA+AGG | + | chr2.4:5864500-5864519 | MS.gene31084:intron | 20.0% |
!!! | TATAGAGATTTTGAATTTGA+AGG | - | chr2.4:5863361-5863380 | None:intergenic | 20.0% |
!!! | TGATTAAATTACCATGATTT+TGG | - | chr2.4:5862566-5862585 | None:intergenic | 20.0% |
! | AAAATCTCTATAGACATAGA+TGG | + | chr2.4:5863369-5863388 | MS.gene31084:intron | 25.0% |
! | AATTAATTACCTTCTTATGG+CGG | - | chr2.4:5864027-5864046 | None:intergenic | 25.0% |
! | ATCTTTATGCTATATATAGG+TGG | + | chr2.4:5863724-5863743 | MS.gene31084:intron | 25.0% |
! | GACAAAATGAGAAATAAAAG+AGG | - | chr2.4:5862590-5862609 | None:intergenic | 25.0% |
! | TCTTTATGCTATATATAGGT+GGG | + | chr2.4:5863725-5863744 | MS.gene31084:intron | 25.0% |
! | TTATTTGAAAGAACAAAGCA+CGG | - | chr2.4:5863175-5863194 | None:intergenic | 25.0% |
! | TTTCGCGTTGTTAATTATTT+CGG | + | chr2.4:5863837-5863856 | MS.gene31084:intron | 25.0% |
!! | ATTTTGTCTCTTACTGAATT+TGG | + | chr2.4:5862602-5862621 | MS.gene31084:intron | 25.0% |
!! | TCTAGAATCTTCTAGAAAAA+GGG | + | chr2.4:5864986-5865005 | MS.gene31084:CDS | 25.0% |
!! | TTTTCGTCATCAGTTTATTT+AGG | + | chr2.4:5863600-5863619 | MS.gene31084:intron | 25.0% |
!!! | AAATTACCATGATTTTGGAA+AGG | - | chr2.4:5862561-5862580 | None:intergenic | 25.0% |
!!! | AATTACCATGATTTTGGAAA+GGG | - | chr2.4:5862560-5862579 | None:intergenic | 25.0% |
AATGACTGCAGATTATTGTT+AGG | - | chr2.4:5862936-5862955 | None:intergenic | 30.0% | |
AATTAACAACGCGAAACTTA+CGG | - | chr2.4:5863833-5863852 | None:intergenic | 30.0% | |
ACACCTTAAATAGTAAGCTT+AGG | - | chr2.4:5864313-5864332 | None:intergenic | 30.0% | |
AGTTGTGACTACTATTCATA+AGG | - | chr2.4:5862713-5862732 | None:intergenic | 30.0% | |
ATGACTGCAGATTATTGTTA+GGG | - | chr2.4:5862935-5862954 | None:intergenic | 30.0% | |
ATGGGTGTGATAAACAATAA+TGG | + | chr2.4:5865269-5865288 | MS.gene31084:CDS | 30.0% | |
ATTAGTCAATGACAACATGT+TGG | + | chr2.4:5862530-5862549 | MS.gene31084:CDS | 30.0% | |
ATTGATATCCTCGAATTAGT+CGG | + | chr2.4:5863882-5863901 | MS.gene31084:intron | 30.0% | |
CAAAGAACATCAATATATCG+TGG | + | chr2.4:5863068-5863087 | MS.gene31084:CDS | 30.0% | |
CACGATATATTGATGTTCTT+TGG | - | chr2.4:5863070-5863089 | None:intergenic | 30.0% | |
CAGTCATTGACATTATCAAT+GGG | + | chr2.4:5862948-5862967 | MS.gene31084:CDS | 30.0% | |
CTTGAGTACTACTATCATAT+AGG | - | chr2.4:5865130-5865149 | None:intergenic | 30.0% | |
GAATATCCTCAAATTCAAGT+AGG | + | chr2.4:5865051-5865070 | MS.gene31084:CDS | 30.0% | |
GGAAACAAAGATCTTTACTT+AGG | + | chr2.4:5864442-5864461 | MS.gene31084:CDS | 30.0% | |
GGTATATTGGGAATATGAAT+GGG | + | chr2.4:5865300-5865319 | MS.gene31084:CDS | 30.0% | |
GTATATTGGGAATATGAATG+GGG | + | chr2.4:5865301-5865320 | MS.gene31084:CDS | 30.0% | |
GTTGTTCAAACTGCATTAAA+GGG | - | chr2.4:5865094-5865113 | None:intergenic | 30.0% | |
TATTTGAAAGAACAAAGCAC+GGG | - | chr2.4:5863174-5863193 | None:intergenic | 30.0% | |
TCAAGTAGGATACAATTACA+AGG | + | chr2.4:5865065-5865084 | MS.gene31084:CDS | 30.0% | |
TCGATGAATTTCTACTTAAG+CGG | - | chr2.4:5863217-5863236 | None:intergenic | 30.0% | |
TCTCCTAAGCTTACTATTTA+AGG | + | chr2.4:5864307-5864326 | MS.gene31084:intron | 30.0% | |
TGTTGTTCAAACTGCATTAA+AGG | - | chr2.4:5865095-5865114 | None:intergenic | 30.0% | |
TTGGAATGAGTTTGAATTGT+GGG | + | chr2.4:5865324-5865343 | MS.gene31084:CDS | 30.0% | |
TTGTATCCTACTTGAATTTG+AGG | - | chr2.4:5865060-5865079 | None:intergenic | 30.0% | |
! | CACAAGGTACTAAATCAAAT+TGG | + | chr2.4:5864252-5864271 | MS.gene31084:intron | 30.0% |
! | GATCTTTACTTAGGAACTTT+TGG | + | chr2.4:5864451-5864470 | MS.gene31084:CDS | 30.0% |
! | TAAGGTGTTTAAATAGCATC+TGG | + | chr2.4:5864325-5864344 | MS.gene31084:intron | 30.0% |
!! | ATCACTGAGTTATTTTGTAC+CGG | - | chr2.4:5862870-5862889 | None:intergenic | 30.0% |
!! | ATTACCATGATTTTGGAAAG+GGG | - | chr2.4:5862559-5862578 | None:intergenic | 30.0% |
!! | CTCTAGAATCTTCTAGAAAA+AGG | + | chr2.4:5864985-5865004 | MS.gene31084:CDS | 30.0% |
!! | TATTATTTGTTGTGCATGCA+TGG | - | chr2.4:5864728-5864747 | None:intergenic | 30.0% |
ATAAATTGCAGAAAGAGCAG+TGG | + | chr2.4:5864196-5864215 | MS.gene31084:intron | 35.0% | |
ATTAACAACGCGAAACTTAC+GGG | - | chr2.4:5863832-5863851 | None:intergenic | 35.0% | |
ATTTAGCAGCACTAAAGTAC+TGG | + | chr2.4:5863782-5863801 | MS.gene31084:CDS | 35.0% | |
CAATATATCGTGGTGTAACA+AGG | + | chr2.4:5863078-5863097 | MS.gene31084:CDS | 35.0% | |
CAGTTACAACAACAACAAAG+TGG | + | chr2.4:5865191-5865210 | MS.gene31084:CDS | 35.0% | |
CGATGAATTTCTACTTAAGC+GGG | - | chr2.4:5863216-5863235 | None:intergenic | 35.0% | |
GCAGTCATTGACATTATCAA+TGG | + | chr2.4:5862947-5862966 | MS.gene31084:CDS | 35.0% | |
GGGTATATTGGGAATATGAA+TGG | + | chr2.4:5865299-5865318 | MS.gene31084:CDS | 35.0% | |
GGTGTGATAAACAATAATGG+TGG | + | chr2.4:5865272-5865291 | MS.gene31084:CDS | 35.0% | |
GTGATAAACAATAATGGTGG+TGG | + | chr2.4:5865275-5865294 | MS.gene31084:CDS | 35.0% | |
GTTAAGCTGTTTAATGGCAT+CGG | + | chr2.4:5863268-5863287 | MS.gene31084:intron | 35.0% | |
GTTGGAATGAGTTTGAATTG+TGG | + | chr2.4:5865323-5865342 | MS.gene31084:CDS | 35.0% | |
TAATTACTTGTTCATGTCGC+CGG | + | chr2.4:5862848-5862867 | MS.gene31084:CDS | 35.0% | |
TATTGATGTTCTTTGGCCAA+AGG | - | chr2.4:5863063-5863082 | None:intergenic | 35.0% | |
TCAGATCAGTAACTATGAGA+AGG | + | chr2.4:5863959-5863978 | MS.gene31084:intron | 35.0% | |
TGATGCATGATTGAACAGAT+TGG | + | chr2.4:5862685-5862704 | MS.gene31084:intron | 35.0% | |
TGTGGGAATAACAATGTTGT+TGG | + | chr2.4:5865341-5865360 | MS.gene31084:CDS | 35.0% | |
TTACAACAACAACAAAGTGG+AGG | + | chr2.4:5865194-5865213 | MS.gene31084:CDS | 35.0% | |
TTCTACAGGTATTATCCCAA+AGG | - | chr2.4:5863415-5863434 | None:intergenic | 35.0% | |
TTGACATTATCAATGGGAAG+TGG | + | chr2.4:5862954-5862973 | MS.gene31084:CDS | 35.0% | |
TTGGGATAATACCTGTAGAA+GGG | + | chr2.4:5863415-5863434 | MS.gene31084:CDS | 35.0% | |
TTTCGGCTAATAGCACAAAT+AGG | + | chr2.4:5863854-5863873 | MS.gene31084:intron | 35.0% | |
! | GCAGGCTCAAATTTTCAATA+TGG | + | chr2.4:5865029-5865048 | MS.gene31084:CDS | 35.0% |
! | TTTAGCAGCACTAAAGTACT+GGG | + | chr2.4:5863783-5863802 | MS.gene31084:CDS | 35.0% |
! | TTTGGGATAATACCTGTAGA+AGG | + | chr2.4:5863414-5863433 | MS.gene31084:CDS | 35.0% |
!! | AAAGAGCAGTGGATTTTCAA+GGG | + | chr2.4:5864207-5864226 | MS.gene31084:CDS | 35.0% |
!! | ATAAACAATAATGGTGGTGG+AGG | + | chr2.4:5865278-5865297 | MS.gene31084:CDS | 35.0% |
!! | ATCATCACCACTTTTCTCTT+GGG | + | chr2.4:5862505-5862524 | MS.gene31084:CDS | 35.0% |
!! | TAAACAATAATGGTGGTGGA+GGG | + | chr2.4:5865279-5865298 | MS.gene31084:CDS | 35.0% |
!! | TATTTTAGGCATCACCAACA+TGG | + | chr2.4:5864388-5864407 | MS.gene31084:intron | 35.0% |
!!! | TTTTATAGGTACTGAGGAAG+AGG | + | chr2.4:5864809-5864828 | MS.gene31084:intron | 35.0% |
AACCCGAGTTTGATGAACAT+GGG | + | chr2.4:5865251-5865270 | MS.gene31084:CDS | 40.0% | |
AAGGTATGAAGCTCACCTTT+GGG | + | chr2.4:5863397-5863416 | MS.gene31084:CDS | 40.0% | |
AATGGGAAGTGGTACTACTA+AGG | + | chr2.4:5862965-5862984 | MS.gene31084:CDS | 40.0% | |
ACACCCATGTTCATCAAACT+CGG | - | chr2.4:5865257-5865276 | None:intergenic | 40.0% | |
ACTTACGGGAAAGTTTGTAG+TGG | - | chr2.4:5863818-5863837 | None:intergenic | 40.0% | |
ATAGACATAGATGGACAGGA+AGG | + | chr2.4:5863378-5863397 | MS.gene31084:intron | 40.0% | |
ATAGCTGCAATCAAGTTCAG+AGG | + | chr2.4:5864849-5864868 | MS.gene31084:CDS | 40.0% | |
ATGCTGGTGTTCTTACAATG+TGG | + | chr2.4:5865456-5865475 | MS.gene31084:CDS | 40.0% | |
ATTGGGAATATGAATGGGGT+TGG | + | chr2.4:5865305-5865324 | MS.gene31084:CDS | 40.0% | |
CCAAGAAAATCTGCAACCTT+TGG | - | chr2.4:5862747-5862766 | None:intergenic | 40.0% | |
CTAATGTCCCAAGAGAAAAG+TGG | - | chr2.4:5862515-5862534 | None:intergenic | 40.0% | |
CTCTATAGACATAGATGGAC+AGG | + | chr2.4:5863374-5863393 | MS.gene31084:intron | 40.0% | |
GAAACCCCTTTCCAAAATCA+TGG | + | chr2.4:5862552-5862571 | MS.gene31084:CDS | 40.0% | |
GAAAGTAACACTCTCCCAAT+AGG | + | chr2.4:5864927-5864946 | MS.gene31084:CDS | 40.0% | |
GATAATACCTGTAGAAGGGA+AGG | + | chr2.4:5863419-5863438 | MS.gene31084:CDS | 40.0% | |
GATTCCACATGTGAAACTAG+TGG | + | chr2.4:5862987-5863006 | MS.gene31084:CDS | 40.0% | |
GGAGGAAGTTGCATATGTTA+AGG | + | chr2.4:5865376-5865395 | MS.gene31084:CDS | 40.0% | |
GGTAATGAAGGATGATGAGT+TGG | - | chr2.4:5862459-5862478 | None:intergenic | 40.0% | |
GTTGATTATGACATGCCTTC+CGG | + | chr2.4:5865398-5865417 | MS.gene31084:CDS | 40.0% | |
TAACCCGAGTTTGATGAACA+TGG | + | chr2.4:5865250-5865269 | MS.gene31084:CDS | 40.0% | |
TACAAGAACCGACTAATTCG+AGG | - | chr2.4:5863893-5863912 | None:intergenic | 40.0% | |
! | AAGGTATCCAAAGCTCTTCT+AGG | - | chr2.4:5863044-5863063 | None:intergenic | 40.0% |
! | ATCACCACTAGTTTCACATG+TGG | - | chr2.4:5862994-5863013 | None:intergenic | 40.0% |
! | CCAAAGGTTGCAGATTTTCT+TGG | + | chr2.4:5862744-5862763 | MS.gene31084:CDS | 40.0% |
! | TGAAGATGAGGTGGTAATGA+AGG | - | chr2.4:5862471-5862490 | None:intergenic | 40.0% |
! | TGGTGATGATGAGATTGAGT+TGG | - | chr2.4:5862495-5862514 | None:intergenic | 40.0% |
!! | AAGAGCAGTGGATTTTCAAG+GGG | + | chr2.4:5864208-5864227 | MS.gene31084:CDS | 40.0% |
!! | AATTTGTTGCCGCCATAAGA+AGG | + | chr2.4:5864015-5864034 | MS.gene31084:CDS | 40.0% |
!! | AGAAGAGCTTTGGATACCTT+TGG | + | chr2.4:5863044-5863063 | MS.gene31084:CDS | 40.0% |
!! | CATCATCACCACTTTTCTCT+TGG | + | chr2.4:5862504-5862523 | MS.gene31084:CDS | 40.0% |
!! | GAAAGAGCAGTGGATTTTCA+AGG | + | chr2.4:5864206-5864225 | MS.gene31084:intron | 40.0% |
!! | GATTGAGTTGGTTGAAGATG+AGG | - | chr2.4:5862483-5862502 | None:intergenic | 40.0% |
!! | TATTTGTTGTGCATGCATGG+AGG | - | chr2.4:5864725-5864744 | None:intergenic | 40.0% |
!! | TTAGCAGCACTAAAGTACTG+GGG | + | chr2.4:5863784-5863803 | MS.gene31084:CDS | 40.0% |
AGGGAAGGACAGTCAAGAAA+AGG | + | chr2.4:5863434-5863453 | MS.gene31084:CDS | 45.0% | |
AGTAACACTCTCCCAATAGG+AGG | + | chr2.4:5864930-5864949 | MS.gene31084:CDS | 45.0% | |
ATGCCTTCCGGAAATTATGG+AGG | + | chr2.4:5865410-5865429 | MS.gene31084:CDS | 45.0% | |
CAACCTCCATAATTTCCGGA+AGG | - | chr2.4:5865416-5865435 | None:intergenic | 45.0% | |
CAACTCCAACGAAGTTCCAA+AGG | + | chr2.4:5862728-5862747 | MS.gene31084:CDS | 45.0% | |
CAAGAGATGATAGCACTTGC+AGG | + | chr2.4:5865011-5865030 | MS.gene31084:CDS | 45.0% | |
CAATGTATCGTGGAGTCACA+AGG | + | chr2.4:5864236-5864255 | MS.gene31084:CDS | 45.0% | |
CACCCATGTTCATCAAACTC+GGG | - | chr2.4:5865256-5865275 | None:intergenic | 45.0% | |
CAGTCAAGAAAAGGTCGTCA+AGG | + | chr2.4:5863443-5863462 | MS.gene31084:CDS | 45.0% | |
CGACCAACCTCCATAATTTC+CGG | - | chr2.4:5865420-5865439 | None:intergenic | 45.0% | |
CTTCCGGAAATTATGGAGGT+TGG | + | chr2.4:5865414-5865433 | MS.gene31084:CDS | 45.0% | |
GACATGCCTTCCGGAAATTA+TGG | + | chr2.4:5865407-5865426 | MS.gene31084:CDS | 45.0% | |
GGAAGATGGCAAGCAAGAAT+TGG | + | chr2.4:5864409-5864428 | MS.gene31084:CDS | 45.0% | |
GGAGGATTCTACAACTACGA+TGG | + | chr2.4:5865212-5865231 | MS.gene31084:CDS | 45.0% | |
TGCAACACCTAGAAGAGCTT+TGG | + | chr2.4:5863034-5863053 | MS.gene31084:CDS | 45.0% | |
TTGCTTGCCATCTTCCATGT+TGG | - | chr2.4:5864405-5864424 | None:intergenic | 45.0% | |
! | CGGAAATTATGGAGGTTGGT+CGG | + | chr2.4:5865418-5865437 | MS.gene31084:CDS | 45.0% |
! | GAAGGTATGAAGCTCACCTT+TGG | + | chr2.4:5863396-5863415 | MS.gene31084:CDS | 45.0% |
! | GGAAATTATGGAGGTTGGTC+GGG | + | chr2.4:5865419-5865438 | MS.gene31084:CDS | 45.0% |
! | GGATGATGAGTTGGAGAAAG+TGG | - | chr2.4:5862450-5862469 | None:intergenic | 45.0% |
! | TGTTGTTGGTGAACATGCAG+CGG | + | chr2.4:5865355-5865374 | MS.gene31084:CDS | 45.0% |
!! | AATGGTGGTGGAGGGTATAT+TGG | + | chr2.4:5865287-5865306 | MS.gene31084:CDS | 45.0% |
!! | ATGGTGGTGGAGGGTATATT+GGG | + | chr2.4:5865288-5865307 | MS.gene31084:CDS | 45.0% |
!! | TAGCAGCACTAAAGTACTGG+GGG | + | chr2.4:5863785-5863804 | MS.gene31084:CDS | 45.0% |
!! | TGAGTTGGTTGAAGATGAGG+TGG | - | chr2.4:5862480-5862499 | None:intergenic | 45.0% |
!! | TGCAACCTTTGGAACTTCGT+TGG | - | chr2.4:5862736-5862755 | None:intergenic | 45.0% |
!! | TATGAAATAATAATTAATAT+TGG | + | chr2.4:5864780-5864799 | MS.gene31084:intron | 5.0% |
!!! | AATTAATTTCATTTTATATT+TGG | + | chr2.4:5864039-5864058 | MS.gene31084:intron | 5.0% |
!!! | ATGAAATTTTTTTTTTTTTA+GGG | - | chr2.4:5864166-5864185 | None:intergenic | 5.0% |
AACACTCTCCCAATAGGAGG+AGG | + | chr2.4:5864933-5864952 | MS.gene31084:CDS | 50.0% | |
GGCATCACCAACATGGAAGA+TGG | + | chr2.4:5864395-5864414 | MS.gene31084:intron | 50.0% | |
GGTGCAGATGCTTCAAATGC+TGG | + | chr2.4:5865440-5865459 | MS.gene31084:CDS | 50.0% | |
TGACTGTCCTTCCCTTCTAC+AGG | - | chr2.4:5863429-5863448 | None:intergenic | 50.0% | |
TTGCAGCACCTCCTCCTATT+GGG | - | chr2.4:5864944-5864963 | None:intergenic | 50.0% | |
TTTGCAGCACCTCCTCCTAT+TGG | - | chr2.4:5864945-5864964 | None:intergenic | 50.0% | |
! | AGGGGTGCATCAATGTATCG+TGG | + | chr2.4:5864226-5864245 | MS.gene31084:CDS | 50.0% |
! | GATCTTTGTTTCCCGCGACT+CGG | - | chr2.4:5864435-5864454 | None:intergenic | 50.0% |
AGCAAGAATTGGCCGAGTCG+CGG | + | chr2.4:5864420-5864439 | MS.gene31084:CDS | 55.0% | |
! | TGTTGGTGAACATGCAGCGG+AGG | + | chr2.4:5865358-5865377 | MS.gene31084:CDS | 55.0% |
GCAAGAATTGGCCGAGTCGC+GGG | + | chr2.4:5864421-5864440 | MS.gene31084:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 5862420 | 5865496 | 5862420 | ID=MS.gene31084 |
chr2.4 | mRNA | 5862420 | 5865496 | 5862420 | ID=MS.gene31084.t1;Parent=MS.gene31084 |
chr2.4 | exon | 5862420 | 5862573 | 5862420 | ID=MS.gene31084.t1.exon1;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5862420 | 5862573 | 5862420 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
chr2.4 | exon | 5862703 | 5863099 | 5862703 | ID=MS.gene31084.t1.exon2;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5862703 | 5863099 | 5862703 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
chr2.4 | exon | 5863382 | 5863464 | 5863382 | ID=MS.gene31084.t1.exon3;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5863382 | 5863464 | 5863382 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
chr2.4 | exon | 5863690 | 5863698 | 5863690 | ID=MS.gene31084.t1.exon4;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5863690 | 5863698 | 5863690 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
chr2.4 | exon | 5863743 | 5863831 | 5863743 | ID=MS.gene31084.t1.exon5;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5863743 | 5863831 | 5863743 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
chr2.4 | exon | 5863963 | 5864036 | 5863963 | ID=MS.gene31084.t1.exon6;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5863963 | 5864036 | 5863963 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
chr2.4 | exon | 5864207 | 5864257 | 5864207 | ID=MS.gene31084.t1.exon7;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5864207 | 5864257 | 5864207 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
chr2.4 | exon | 5864396 | 5864472 | 5864396 | ID=MS.gene31084.t1.exon8;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5864396 | 5864472 | 5864396 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
chr2.4 | exon | 5864817 | 5865496 | 5864817 | ID=MS.gene31084.t1.exon9;Parent=MS.gene31084.t1 |
chr2.4 | CDS | 5864817 | 5865496 | 5864817 | ID=cds.MS.gene31084.t1;Parent=MS.gene31084.t1 |
Gene Sequence |
Protein sequence |