AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31099.t1 MTR_2g097950 96.761 494 16 0 1 494 13 506 0.0 979
MS.gene31099.t1 MTR_2g097950 89.879 494 15 1 1 494 13 471 0.0 892
MS.gene31099.t1 MTR_4g065040 71.855 469 131 1 5 472 1 469 0.0 671
MS.gene31099.t1 MTR_8g076480 56.250 480 203 2 8 483 9 485 0.0 574
MS.gene31099.t1 MTR_1g029840 47.182 479 250 1 3 481 11 486 3.63e-161 466
MS.gene31099.t1 MTR_1g029840 47.390 479 249 1 3 481 11 486 2.35e-159 461
MS.gene31099.t1 MTR_8g094600 47.447 470 244 1 12 481 73 539 6.95e-157 457
MS.gene31099.t1 MTR_3g088150 45.929 479 256 1 3 481 13 488 1.81e-156 454
MS.gene31099.t1 MTR_1222s0010 34.316 373 232 7 15 384 12 374 9.44e-64 220
MS.gene31099.t1 MTR_1314s0010 31.977 344 217 5 108 441 1 337 1.12e-57 195
MS.gene31099.t1 MTR_2g034160 26.966 445 294 10 29 453 102 535 2.69e-40 153
MS.gene31099.t1 MTR_2g067660 29.379 354 232 10 104 448 178 522 2.56e-39 149
MS.gene31099.t1 MTR_3g078490 26.804 485 293 13 1 454 77 530 7.80e-33 131
MS.gene31099.t1 MTR_4g106510 28.698 453 290 14 23 454 60 500 1.52e-32 130
MS.gene31099.t1 MTR_3g078550 27.101 476 303 15 1 454 17 470 1.75e-32 129
MS.gene31099.t1 MTR_3g078550 27.101 476 303 15 1 454 47 500 2.82e-32 129
MS.gene31099.t1 MTR_4g020720 47.692 130 62 3 175 301 116 242 4.90e-28 113
MS.gene31099.t1 MTR_6g086300 29.817 436 260 18 39 456 94 501 8.44e-28 116
MS.gene31099.t1 MTR_6g086300 29.817 436 260 18 39 456 94 501 8.44e-28 116
MS.gene31099.t1 MTR_4g107040 26.813 455 300 14 2 440 97 534 9.04e-28 117
MS.gene31099.t1 MTR_8g064170 27.679 448 297 14 6 440 98 531 6.59e-27 114
MS.gene31099.t1 MTR_8g083530 26.819 481 292 17 2 456 56 502 1.57e-26 112
MS.gene31099.t1 MTR_3g078170 26.116 448 304 13 6 440 99 532 3.90e-25 108
MS.gene31099.t1 MTR_4g131180 26.757 441 287 14 2 423 44 467 6.10e-25 108
MS.gene31099.t1 MTR_6g086340 27.315 432 261 15 39 445 92 495 1.47e-24 107
MS.gene31099.t1 MTR_1g014320 28.660 321 213 9 108 423 158 467 1.26e-23 104
MS.gene31099.t1 MTR_4g131180 26.620 432 281 14 2 414 44 458 6.78e-23 101
MS.gene31099.t1 MTR_8g064170 27.069 447 269 16 6 440 98 499 1.61e-21 97.8
MS.gene31099.t1 MTR_2g042330 26.629 353 238 10 105 447 152 493 2.93e-18 87.8
MS.gene31099.t1 MTR_3g078170 25.745 369 249 12 6 361 99 455 1.14e-17 85.9
MS.gene31099.t1 MTR_8g083520 25.792 442 237 19 39 456 6 380 2.46e-17 84.0
MS.gene31099.t1 MTR_8g083520 25.682 440 243 18 30 445 77 456 3.08e-17 84.3
MS.gene31099.t1 MTR_4g020710 52.778 72 33 1 295 365 14 85 5.71e-17 77.8
MS.gene31099.t1 MTR_2g009750 26.774 310 205 10 105 401 147 447 4.63e-16 81.3
MS.gene31099.t1 MTR_2g009750 26.774 310 204 10 105 401 146 445 5.91e-16 80.9
MS.gene31099.t1 MTR_2g009750 26.774 310 204 10 105 401 147 446 7.01e-16 80.5
MS.gene31099.t1 MTR_4g093170 26.452 310 206 10 105 401 174 474 1.26e-15 79.7
MS.gene31099.t1 MTR_3g078490 28.155 309 172 9 1 286 47 328 3.64e-15 77.4
MS.gene31099.t1 MTR_1690s0010 28.000 200 134 8 108 302 146 340 9.08e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31099.t1 AT4G36250 53.002 483 227 0 1 483 1 483 0.0 565
MS.gene31099.t1 AT1G44170 48.195 471 241 1 12 482 16 483 3.25e-161 466
MS.gene31099.t1 AT1G44170 48.195 471 241 1 12 482 16 483 3.25e-161 466
MS.gene31099.t1 AT4G34240 49.469 471 235 1 12 482 64 531 1.94e-156 456
MS.gene31099.t1 AT4G34240 49.469 471 235 1 12 482 79 546 2.04e-156 456
MS.gene31099.t1 AT1G44170 49.761 418 207 1 65 482 6 420 1.03e-147 429
MS.gene31099.t1 AT4G34240 51.478 406 194 1 77 482 2 404 1.78e-140 410
MS.gene31099.t1 AT4G34240 49.206 315 157 1 12 326 79 390 9.56e-96 295
MS.gene31099.t1 AT3G66658 27.406 478 312 11 23 471 96 567 1.37e-46 171
MS.gene31099.t1 AT3G66658 27.477 444 296 9 23 446 96 533 6.76e-46 168
MS.gene31099.t1 AT1G79440 30.460 348 222 9 104 441 184 521 1.50e-39 150
MS.gene31099.t1 AT1G74920 29.680 438 284 14 30 454 69 495 1.03e-35 139
MS.gene31099.t1 AT1G74920 29.680 438 284 14 30 454 74 500 1.25e-35 139
MS.gene31099.t1 AT3G48170 26.737 475 303 16 6 454 45 500 5.36e-31 125
MS.gene31099.t1 AT1G23800 27.212 452 302 14 2 440 87 524 1.35e-28 119
MS.gene31099.t1 AT3G48000 27.212 452 302 13 2 440 91 528 1.40e-26 113
MS.gene31099.t1 AT3G24503 27.739 429 272 18 30 440 83 491 3.11e-25 108
MS.gene31099.t1 AT2G24270 29.283 321 211 9 108 423 198 507 5.55e-24 105
MS.gene31099.t1 AT2G24270 29.283 321 211 9 108 423 158 467 1.07e-23 104
MS.gene31099.t1 AT2G24270 29.283 321 211 9 108 423 158 467 1.09e-23 104
MS.gene31099.t1 AT2G24270 29.283 321 211 9 108 423 158 467 1.09e-23 104
MS.gene31099.t1 AT1G54100 27.429 350 233 10 108 447 154 492 4.59e-18 87.4
MS.gene31099.t1 AT1G54100 27.429 350 233 10 108 447 154 492 4.59e-18 87.4
MS.gene31099.t1 AT2G14170 23.059 438 299 12 29 443 58 480 6.92e-11 65.1

Find 108 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTATGTAGATTTA+TGG 0.118638 2.4:-6001230 MS.gene31099:intron
CACTGTTCTACCAAATTATT+TGG 0.132543 2.4:-6003580 MS.gene31099:CDS
CACTTGAAAGTAGTGCTATT+TGG 0.163353 2.4:+6003871 None:intergenic
TTCTCCTAGCCACAGCTTTA+TGG 0.164740 2.4:+6000241 None:intergenic
AAGGCCCTCAAGAAGGATTT+AGG 0.176467 2.4:-6004267 MS.gene31099:CDS
AGGAGTTGCTCTCCAATTTC+TGG 0.180506 2.4:+6003525 None:intergenic
CCTTTATTGTCCAAATAATT+TGG 0.194174 2.4:+6003570 None:intergenic
GCAATGCTGTTGGATTCTTT+TGG 0.215212 2.4:+6002509 None:intergenic
TTGATTCACTTTCAACTTCT+TGG 0.229573 2.4:-6003273 MS.gene31099:CDS
TACTTATCTTACAGTGATAA+TGG 0.233953 2.4:+6001135 None:intergenic
CCAAATTATTTGGACAATAA+AGG 0.258186 2.4:-6003570 MS.gene31099:CDS
ACTTGAAAGTAGTGCTATTT+GGG 0.262171 2.4:+6003872 None:intergenic
TGGAGAGAATCACAACTAAA+AGG 0.262228 2.4:-6004330 MS.gene31099:CDS
TATGGAACCAACAATATTAC+TGG 0.285040 2.4:-6001212 MS.gene31099:CDS
GCATAAATTGCTAGAGGTTT+AGG 0.288414 2.4:+6000950 None:intergenic
GATGGCTGTGAAACGAATTT+TGG 0.298929 2.4:-6002756 MS.gene31099:CDS
GTGTCCTTGGAGCCATTAAT+TGG 0.298989 2.4:-6003675 MS.gene31099:CDS
ATTGAAGGTGGACCAGAAAT+TGG 0.299642 2.4:-6003537 MS.gene31099:CDS
GTTAAAGAAATCCATTGATT+TGG 0.305202 2.4:-6004097 MS.gene31099:CDS
AAGAACATGAGAAAGTATTA+TGG 0.305368 2.4:-6004378 MS.gene31099:CDS
GCAGCTATGGCTCCAATTAA+TGG 0.306017 2.4:+6003663 None:intergenic
ACTCCTATAACTCTGGAGTT+AGG 0.328012 2.4:-6003316 MS.gene31099:CDS
GAGGAGACTCTTGATTCTAT+TGG 0.336102 2.4:+6002463 None:intergenic
TGTAAGCTTCTTCAAGTAGT+TGG 0.339552 2.4:+6000166 None:intergenic
TGATTCACTTTCAACTTCTT+GGG 0.343615 2.4:-6003272 MS.gene31099:CDS
GGAGTTCTCAGTGGAAGCTT+TGG 0.372513 2.4:-6004412 MS.gene31099:CDS
CTCCTATAACTCTGGAGTTA+GGG 0.372962 2.4:-6003315 MS.gene31099:CDS
TTCAAAACGTTCATTATATG+AGG 0.382788 2.4:-6000097 MS.gene31099:CDS
ACCACCGATTCTTTGACATT+AGG 0.390930 2.4:+6002434 None:intergenic
AGGCCCTCAAGAAGGATTTA+GGG 0.400687 2.4:-6004266 MS.gene31099:CDS
GGACTTTATTGCCAAATCAA+TGG 0.403173 2.4:+6004086 None:intergenic
AGAACATGAGAAAGTATTAT+GGG 0.405722 2.4:-6004377 MS.gene31099:CDS
ACTTATCTTACAGTGATAAT+GGG 0.411701 2.4:+6001136 None:intergenic
GGAGTTGGTGAATGTGGATT+TGG 0.413532 2.4:-6000303 MS.gene31099:CDS
ACCATCCCATTTGGAGGAGT+TGG 0.443845 2.4:-6000318 MS.gene31099:CDS
ATAGCGGATACCATCCCATT+TGG 0.449228 2.4:-6000327 MS.gene31099:CDS
AACAATCCTTGCAATGCTGT+TGG 0.454731 2.4:+6002499 None:intergenic
ATTTAATGATGCAATTCTAC+AGG 0.457393 2.4:-6000864 MS.gene31099:intron
GAAATTGTTGCTGAGCCTCT+TGG 0.457989 2.4:-6003846 MS.gene31099:CDS
TTTGGTTCAGGTTTCCTCCA+TGG 0.459950 2.4:-6000203 MS.gene31099:CDS
CTTCCCTAAATCCTTCTTGA+GGG 0.460635 2.4:+6004263 None:intergenic
CATTCACCAACTCCTCCAAA+TGG 0.461138 2.4:+6000312 None:intergenic
ATCATGACAGAAGAAATCTT+TGG 0.467373 2.4:-6001169 MS.gene31099:CDS
CAAAACACTGCAGAGAAGAT+TGG 0.468898 2.4:-6000915 MS.gene31099:CDS
CTAGAAGAGAAGAAGAAGTA+AGG 0.473115 2.4:+6003604 None:intergenic
GCATCTCACTCCTATAACTC+TGG 0.477082 2.4:-6003323 MS.gene31099:CDS
TTGGTATCTGAAACATCATC+CGG 0.480961 2.4:-6000896 MS.gene31099:CDS
TGGAACTTGTTAAGATTCCA+TGG 0.484735 2.4:+6000186 None:intergenic
GCTTACAATTTAAACTACAT+TGG 0.487149 2.4:-6000150 MS.gene31099:CDS
TAGGTGGAGTTAATGAAGGA+AGG 0.488749 2.4:-6002557 MS.gene31099:CDS
GCAAAGTATGGGGCTTGTGC+AGG 0.494839 2.4:-6002731 MS.gene31099:CDS
AAAGGCATTAAGATCATTGA+AGG 0.497453 2.4:-6003552 MS.gene31099:CDS
TGCAACATTTCCAGCAGCTA+TGG 0.497942 2.4:+6003650 None:intergenic
AATTCCATGATGAGATTATG+AGG 0.500503 2.4:+6003817 None:intergenic
AAAATGGATGGCTGGTAAAG+AGG 0.500707 2.4:-6004058 MS.gene31099:intron
TCTTTAGGTGGAGTTAATGA+AGG 0.502645 2.4:-6002561 MS.gene31099:intron
GGAGAGAATCACAACTAAAA+GGG 0.505316 2.4:-6004329 MS.gene31099:CDS
GCTTCCCTAAATCCTTCTTG+AGG 0.505953 2.4:+6004262 None:intergenic
AGGTGGAGTTAATGAAGGAA+GGG 0.506548 2.4:-6002556 MS.gene31099:CDS
TGTGGATTTGGCAAGTATCA+TGG 0.509305 2.4:-6000291 MS.gene31099:CDS
ATGAGAAAGTATTATGGGAG+TGG 0.517718 2.4:-6004372 MS.gene31099:CDS
TGAACCTAATGTCAAAGAAT+CGG 0.526059 2.4:-6002438 MS.gene31099:CDS
GAAAGTGAATCAACCAGTGC+TGG 0.531970 2.4:+6003283 None:intergenic
AAATGAGGAAGAGATCTTGA+AGG 0.532562 2.4:-6004286 MS.gene31099:CDS
GATTGTTATGTCTGCAGCAG+TGG 0.533250 2.4:-6003347 MS.gene31099:CDS
ATTCACCAACTCCTCCAAAT+GGG 0.535804 2.4:+6000313 None:intergenic
TTAATTGGAGCCATAGCTGC+TGG 0.536986 2.4:-6003660 MS.gene31099:CDS
GTGGATTTGGCAAGTATCAT+GGG 0.538798 2.4:-6000290 MS.gene31099:CDS
ATCATTAAATACAATGCTCC+CGG 0.543496 2.4:+6000877 None:intergenic
TTTGGAGGAGTTGGTGAATG+TGG 0.544032 2.4:-6000309 MS.gene31099:CDS
TCCTATAACTCTGGAGTTAG+GGG 0.551937 2.4:-6003314 MS.gene31099:CDS
TAACTTTGTCAAAGAAAATG+AGG 0.553225 2.4:-6004301 MS.gene31099:CDS
GCGGATACCATCCCATTTGG+AGG 0.558921 2.4:-6000324 MS.gene31099:CDS
TACAGTGATAATGGGAAGCA+CGG 0.561570 2.4:+6001144 None:intergenic
GTCATGATTGCTGATTCAAG+TGG 0.562929 2.4:+6001184 None:intergenic
GAAGTAAGGGCCAACTCTGA+AGG 0.563236 2.4:+6003618 None:intergenic
AGTCCTAAAACCTTCAGAGT+TGG 0.563574 2.4:-6003628 MS.gene31099:CDS
TAGTCCTCATAATCTCATCA+TGG 0.574613 2.4:-6003821 MS.gene31099:CDS
GGCTCCAATTAATGGCTCCA+AGG 0.575676 2.4:+6003671 None:intergenic
GTGAAAGCATAAATTGCTAG+AGG 0.575786 2.4:+6000944 None:intergenic
TAGAAGAGAAGAAGAAGTAA+GGG 0.579415 2.4:+6003605 None:intergenic
GATCTTGAAGGCCCTCAAGA+AGG 0.580261 2.4:-6004274 MS.gene31099:CDS
ATATTAGGAAGTGCACGAGT+GGG 0.582326 2.4:-6003373 MS.gene31099:intron
TTTAGGGAAGCATCATGTTG+AGG 0.599307 2.4:-6004250 MS.gene31099:CDS
TATATTAGGAAGTGCACGAG+TGG 0.599974 2.4:-6003374 MS.gene31099:intron
AAAGAGCTTCAGTTCCACAT+TGG 0.608853 2.4:-6002672 MS.gene31099:intron
GGCATTAAGATCATTGAAGG+TGG 0.608940 2.4:-6003549 MS.gene31099:CDS
ACCAACTCCTCCAAATGGGA+TGG 0.608963 2.4:+6000317 None:intergenic
TCATGATTGCTGATTCAAGT+GGG 0.615088 2.4:+6001185 None:intergenic
ACCTAATGTCAAAGAATCGG+TGG 0.620390 2.4:-6002435 MS.gene31099:CDS
AAGAATCCAACAGCATTGCA+AGG 0.622783 2.4:-6002505 MS.gene31099:CDS
TAGGAAGTGCACGAGTGGGG+AGG 0.625912 2.4:-6003369 MS.gene31099:CDS
GTCACCATAAAGCTGTGGCT+AGG 0.633443 2.4:-6000245 MS.gene31099:CDS
ACAGTGATAATGGGAAGCAC+GGG 0.640005 2.4:+6001145 None:intergenic
TGGTATCTGAAACATCATCC+GGG 0.645652 2.4:-6000895 MS.gene31099:CDS
TATTAGGAAGTGCACGAGTG+GGG 0.646738 2.4:-6003372 MS.gene31099:intron
CAGGTGGAGAAGATTGAAGA+CGG 0.650633 2.4:-6000995 MS.gene31099:CDS
TTCAACTTCTTGGGACAGAG+AGG 0.650826 2.4:-6003263 MS.gene31099:intron
CAAATAATTTGGTAGAACAG+TGG 0.655707 2.4:+6003581 None:intergenic
ATGATTGCTGATTCAAGTGG+GGG 0.665274 2.4:+6001187 None:intergenic
CTTGAAAGTAGTGCTATTTG+GGG 0.666143 2.4:+6003873 None:intergenic
CCTATAACTCTGGAGTTAGG+GGG 0.670137 2.4:-6003313 MS.gene31099:CDS
TGGTAACATGGAGTTCTCAG+TGG 0.677211 2.4:-6004421 None:intergenic
CATGATTGCTGATTCAAGTG+GGG 0.687119 2.4:+6001186 None:intergenic
CTTTGACATTAGGTTCACTG+AGG 0.691733 2.4:+6002444 None:intergenic
ATTCAGTCACCATAAAGCTG+TGG 0.694399 2.4:-6000250 MS.gene31099:CDS
ATTATGAGGACTAGACCAAG+AGG 0.704548 2.4:+6003831 None:intergenic
AACTTGTTAAGATTCCATGG+AGG 0.758325 2.4:+6000189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAATAAATAAAAT+CGG + chr2.4:6001689-6001708 None:intergenic 0.0%
!! TAAAAAAATAAATAAAATCG+GGG + chr2.4:6001687-6001706 None:intergenic 10.0%
!! TTTCAATAAACTAAATATAA+TGG + chr2.4:6000527-6000546 None:intergenic 10.0%
!!! AGTTTTATTAATATAAACTA+AGG - chr2.4:6001537-6001556 MS.gene31099:intron 10.0%
!! ATTCCCAAATAAATATTATT+TGG - chr2.4:6002331-6002350 MS.gene31099:intron 15.0%
!! ATTTAAATGATTGAATTAAC+CGG - chr2.4:6002289-6002308 MS.gene31099:intron 15.0%
!! CAAAATCAAGAAAAAATTAA+AGG + chr2.4:6002433-6002452 None:intergenic 15.0%
!! CCTATATTAATAAAACTTAA+TGG + chr2.4:6001397-6001416 None:intergenic 15.0%
!! GCAAATTATATATATACATA+TGG + chr2.4:6000373-6000392 None:intergenic 15.0%
!! TGTCCAAATAATATTTATTT+GGG + chr2.4:6002337-6002356 None:intergenic 15.0%
!!! AAATAGTCTTAAAAAAAACT+TGG + chr2.4:6003957-6003976 None:intergenic 15.0%
!!! AATTTATTCAAAGGTATTTT+AGG - chr2.4:6003011-6003030 MS.gene31099:intron 15.0%
!!! AGTTAACTACTTTTTTTTAA+AGG + chr2.4:6002884-6002903 None:intergenic 15.0%
!!! ATAAGGTATTAAAAAAAACA+AGG + chr2.4:6002772-6002791 None:intergenic 15.0%
!!! ATGATTTTTCTTTCTTTTAA+CGG - chr2.4:6003893-6003912 MS.gene31099:intron 15.0%
!!! ATGTATATTTCTGTTTAATT+TGG - chr2.4:6000333-6000352 MS.gene31099:CDS 15.0%
!!! CCATTAAGTTTTATTAATAT+AGG - chr2.4:6001394-6001413 MS.gene31099:intron 15.0%
!!! GTTAACTACTTTTTTTTAAA+GGG + chr2.4:6002883-6002902 None:intergenic 15.0%
!!! TATGTATATATATAATTTGC+AGG - chr2.4:6000373-6000392 MS.gene31099:intron 15.0%
!!! TTTAATTTCATGTAAAAGTA+TGG + chr2.4:6000565-6000584 None:intergenic 15.0%
!! ATAATCATGTAAGGAAAAAT+TGG + chr2.4:6003223-6003242 None:intergenic 20.0%
!! ATCATAAAGATAATCATGTA+AGG + chr2.4:6003232-6003251 None:intergenic 20.0%
!! CAAAAACTCTATAATGTTTA+TGG + chr2.4:6002977-6002996 None:intergenic 20.0%
!! CAAACCCAAATAAAAATATT+TGG + chr2.4:6002465-6002484 None:intergenic 20.0%
!! GATTAAAAAGGACTAAAATA+AGG + chr2.4:6003409-6003428 None:intergenic 20.0%
!! GTGTCCAAATAATATTTATT+TGG + chr2.4:6002338-6002357 None:intergenic 20.0%
!! TAAACAATTGAAACTAAACT+TGG + chr2.4:6003481-6003500 None:intergenic 20.0%
!! TAAATTGAATCATCTATAAC+CGG - chr2.4:6003825-6003844 MS.gene31099:CDS 20.0%
!! TGAAATCTTATGTAGATTTA+TGG - chr2.4:6003270-6003289 MS.gene31099:CDS 20.0%
!! TTGATTGCTTATATATGAAA+CGG + chr2.4:6002848-6002867 None:intergenic 20.0%
!! TTGTAATGATCCAATATATT+AGG - chr2.4:6001112-6001131 MS.gene31099:intron 20.0%
!!! AAAGAGTTTAAATCTTTTCT+AGG - chr2.4:6001608-6001627 MS.gene31099:intron 20.0%
!!! AGTTGTTTTTTCTTTTTCTT+TGG + chr2.4:6003077-6003096 None:intergenic 20.0%
!!! ATGTTTATTATTTGAAGTCA+AGG + chr2.4:6002680-6002699 None:intergenic 20.0%
!!! CTGTTAAGTTGAAAATAATA+AGG + chr2.4:6000598-6000617 None:intergenic 20.0%
!!! CTTATTATTTTCAACTTAAC+AGG - chr2.4:6000596-6000615 MS.gene31099:intron 20.0%
!!! GCTTTTGAAAACATTTTTTT+AGG + chr2.4:6003181-6003200 None:intergenic 20.0%
!!! GTGACCAAATATTTTTATTT+GGG - chr2.4:6002458-6002477 MS.gene31099:CDS 20.0%
!!! TATATATATAATTTGCAGGT+TGG - chr2.4:6000377-6000396 MS.gene31099:intron 20.0%
!!! TGTGACCAAATATTTTTATT+TGG - chr2.4:6002457-6002476 MS.gene31099:CDS 20.0%
!!! TTGAAGAATACTGATTAAAA+AGG + chr2.4:6003421-6003440 None:intergenic 20.0%
!!! TTTTTCCTCTTAAGAATTTT+AGG - chr2.4:6002624-6002643 MS.gene31099:intron 20.0%
!!! TTTTTTTTTGCAGTATATAG+CGG - chr2.4:6004157-6004176 MS.gene31099:intron 20.0%
! AACTAAACTTGGTTAACATT+TGG + chr2.4:6003470-6003489 None:intergenic 25.0%
! AATTGAAATGAAAAGCAAGA+AGG + chr2.4:6001055-6001074 None:intergenic 25.0%
! ACCTAAAGAGAATAAAACAA+AGG + chr2.4:6001928-6001947 None:intergenic 25.0%
! ACTTATCTTACAGTGATAAT+GGG + chr2.4:6003367-6003386 None:intergenic 25.0%
! AGAAGGTAAAAGAAATAGTA+AGG + chr2.4:6001038-6001057 None:intergenic 25.0%
! AGTTTCAATTGTTTATTTGC+AGG - chr2.4:6003486-6003505 MS.gene31099:intron 25.0%
! ATTATCTTTCATATGCCAAT+TGG + chr2.4:6004132-6004151 None:intergenic 25.0%
! ATTTAATGATGCAATTCTAC+AGG - chr2.4:6003636-6003655 MS.gene31099:CDS 25.0%
! ATTTCTCATTTAGTCATTCT+TGG + chr2.4:6002520-6002539 None:intergenic 25.0%
! ATTTCTGTTGAACAATAAGA+TGG - chr2.4:6001726-6001745 MS.gene31099:intron 25.0%
! CAAAAGTAGCAAATTAATGA+AGG - chr2.4:6001331-6001350 MS.gene31099:intron 25.0%
! CAATAAAGTCCTTCAAAAAA+TGG - chr2.4:6000426-6000445 MS.gene31099:intron 25.0%
! CATAAAAATACCGAATTGTT+AGG - chr2.4:6001425-6001444 MS.gene31099:intron 25.0%
! CATAGTAGTGAAAATATGTT+AGG + chr2.4:6003708-6003727 None:intergenic 25.0%
! CCAAATTATTTGGACAATAA+AGG - chr2.4:6000930-6000949 MS.gene31099:CDS 25.0%
! CCTTTATTGTCCAAATAATT+TGG + chr2.4:6000933-6000952 None:intergenic 25.0%
! GAAGGGATTAAAAAAATGTT+TGG - chr2.4:6001961-6001980 MS.gene31099:intron 25.0%
! GCTTACAATTTAAACTACAT+TGG - chr2.4:6004350-6004369 MS.gene31099:CDS 25.0%
! GGTGTTCTTGATAAAATTAA+CGG + chr2.4:6004111-6004130 None:intergenic 25.0%
! TAACTTTGTCAAAGAAAATG+AGG - chr2.4:6000199-6000218 MS.gene31099:CDS 25.0%
! TACTTATCTTACAGTGATAA+TGG + chr2.4:6003368-6003387 None:intergenic 25.0%
! TCTAACCGTATATAAATAGT+CGG + chr2.4:6003864-6003883 None:intergenic 25.0%
! TGATTGCTTATATATGAAAC+GGG + chr2.4:6002847-6002866 None:intergenic 25.0%
! TGTAATAGAAAGAAGAAAGA+AGG + chr2.4:6002807-6002826 None:intergenic 25.0%
! TTCAAAACGTTCATTATATG+AGG - chr2.4:6004403-6004422 MS.gene31099:CDS 25.0%
!! ATTTTATCAAGAACACCAAT+TGG - chr2.4:6004114-6004133 MS.gene31099:intron 25.0%
!! GGAAAATTGTACATTTTACA+AGG + chr2.4:6003113-6003132 None:intergenic 25.0%
!! GTTAAAGAAATCCATTGATT+TGG - chr2.4:6000403-6000422 MS.gene31099:intron 25.0%
!! TTTTCACAATAAGATAGTGA+GGG + chr2.4:6004031-6004050 None:intergenic 25.0%
!! TTTTTGTACATAGATTCTCT+GGG + chr2.4:6003134-6003153 None:intergenic 25.0%
!!! AAGAACATGAGAAAGTATTA+TGG - chr2.4:6000122-6000141 MS.gene31099:CDS 25.0%
!!! AGAACATGAGAAAGTATTAT+GGG - chr2.4:6000123-6000142 MS.gene31099:CDS 25.0%
!!! TCCTTTGTTTTATTCTCTTT+AGG - chr2.4:6001924-6001943 MS.gene31099:intron 25.0%
!!! TTTGTTTTATTCTCTTTAGG+TGG - chr2.4:6001927-6001946 MS.gene31099:intron 25.0%
!!! TTTTTTGTACATAGATTCTC+TGG + chr2.4:6003135-6003154 None:intergenic 25.0%
AAAGTCCTTCAAAAAATGGA+TGG - chr2.4:6000430-6000449 MS.gene31099:intron 30.0%
AATTCCATGATGAGATTATG+AGG + chr2.4:6000686-6000705 None:intergenic 30.0%
ACCATCCTAAAATTCTTAAG+AGG + chr2.4:6002632-6002651 None:intergenic 30.0%
AGCAACTCCTACATAAAAAA+TGG - chr2.4:6000988-6001007 MS.gene31099:CDS 30.0%
AGGAATGATAGCATTAACTA+TGG - chr2.4:6003031-6003050 MS.gene31099:intron 30.0%
ATCATGACAGAAGAAATCTT+TGG - chr2.4:6003331-6003350 MS.gene31099:CDS 30.0%
ATCATTAAATACAATGCTCC+CGG + chr2.4:6003626-6003645 None:intergenic 30.0%
ATGTACCTTCTATTGTAGAA+AGG - chr2.4:6001289-6001308 MS.gene31099:intron 30.0%
CAAATAATTTGGTAGAACAG+TGG + chr2.4:6000922-6000941 None:intergenic 30.0%
CAAGGTGAAAACATGAAATA+TGG + chr2.4:6002662-6002681 None:intergenic 30.0%
CACTGTTCTACCAAATTATT+TGG - chr2.4:6000920-6000939 MS.gene31099:CDS 30.0%
GCAACTCCTACATAAAAAAT+GGG - chr2.4:6000989-6001008 MS.gene31099:CDS 30.0%
GTTCATTTAATCTTGTCACA+TGG - chr2.4:6001265-6001284 MS.gene31099:intron 30.0%
GTTGAAAATAATAAGGCACA+CGG + chr2.4:6000591-6000610 None:intergenic 30.0%
TAGAAGAGAAGAAGAAGTAA+GGG + chr2.4:6000898-6000917 None:intergenic 30.0%
TAGGTAGACCAAAATGATAA+TGG + chr2.4:6001512-6001531 None:intergenic 30.0%
TATGGAACCAACAATATTAC+TGG - chr2.4:6003288-6003307 MS.gene31099:CDS 30.0%
TGAACCTAATGTCAAAGAAT+CGG - chr2.4:6002062-6002081 MS.gene31099:intron 30.0%
TGATTCACTTTCAACTTCTT+GGG - chr2.4:6001228-6001247 MS.gene31099:intron 30.0%
TGTAGCCGACTATTTATATA+CGG - chr2.4:6003856-6003875 MS.gene31099:CDS 30.0%
TTCAATTGTTTATTTGCAGG+TGG - chr2.4:6003489-6003508 MS.gene31099:intron 30.0%
TTGATTCACTTTCAACTTCT+TGG - chr2.4:6001227-6001246 MS.gene31099:intron 30.0%
! CTTTTCACAATAAGATAGTG+AGG + chr2.4:6004032-6004051 None:intergenic 30.0%
! TCATCATGGAATTTTCCATT+TGG - chr2.4:6000693-6000712 MS.gene31099:intron 30.0%
! TCCATTTGGTGAGTAAAATA+TGG - chr2.4:6000707-6000726 MS.gene31099:intron 30.0%
!! AAAGGCATTAAGATCATTGA+AGG - chr2.4:6000948-6000967 MS.gene31099:CDS 30.0%
!! ACCAAAATGATAATGGTCAT+CGG + chr2.4:6001505-6001524 None:intergenic 30.0%
!! ACTTGAAAGTAGTGCTATTT+GGG + chr2.4:6000631-6000650 None:intergenic 30.0%
!! AGGAAAAATTGGTCTCTTTT+AGG + chr2.4:6003212-6003231 None:intergenic 30.0%
!! AGTATTCTTCAAAAGTGTCA+AGG - chr2.4:6003429-6003448 MS.gene31099:intron 30.0%
!! GAAAAACAAAAGAAGCATCA+TGG - chr2.4:6000150-6000169 MS.gene31099:CDS 30.0%
!! TCCTCTTAAGAATTTTAGGA+TGG - chr2.4:6002628-6002647 MS.gene31099:intron 30.0%
!! TTTCTCTTGGTTTTTGTAAC+AGG - chr2.4:6000801-6000820 MS.gene31099:intron 30.0%
!!! GAAGTTACTACACTGATTTT+TGG - chr2.4:6004279-6004298 MS.gene31099:CDS 30.0%
!!! GGAATACTTCTTGTTTTACT+CGG - chr2.4:6004371-6004390 MS.gene31099:CDS 30.0%
!!! TCGACGAAGTTTTAAATTCA+CGG - chr2.4:6002159-6002178 MS.gene31099:intron 30.0%
!!! TCTTGTCCCATTTTTTATGT+AGG + chr2.4:6000998-6001017 None:intergenic 30.0%
AAATGAGGAAGAGATCTTGA+AGG - chr2.4:6000214-6000233 MS.gene31099:CDS 35.0%
CATTGCCTTTCTACAATAGA+AGG + chr2.4:6001297-6001316 None:intergenic 35.0%
CTAGAAGAGAAGAAGAAGTA+AGG + chr2.4:6000899-6000918 None:intergenic 35.0%
CTCCTAACATATAGTCATTC+TGG + chr2.4:6001566-6001585 None:intergenic 35.0%
CTTGCAAAACAAAACCTTAC+TGG + chr2.4:6003734-6003753 None:intergenic 35.0%
GCATAAATTGCTAGAGGTTT+AGG + chr2.4:6003553-6003572 None:intergenic 35.0%
GGACTTTATTGCCAAATCAA+TGG + chr2.4:6000417-6000436 None:intergenic 35.0%
GGAGAGAATCACAACTAAAA+GGG - chr2.4:6000171-6000190 MS.gene31099:CDS 35.0%
GTCCAGAATGACTATATGTT+AGG - chr2.4:6001561-6001580 MS.gene31099:intron 35.0%
GTTCAAAGTTGTGTTTCTCT+TGG - chr2.4:6000788-6000807 MS.gene31099:intron 35.0%
TAGGACATTCGCAAAATGAT+CGG - chr2.4:6001627-6001646 MS.gene31099:intron 35.0%
TAGTCCTCATAATCTCATCA+TGG - chr2.4:6000679-6000698 MS.gene31099:intron 35.0%
TCACTACTATGAAACCAGTA+AGG - chr2.4:6003717-6003736 MS.gene31099:intron 35.0%
TCGTGCACTTCCTAATATAT+TGG + chr2.4:6001125-6001144 None:intergenic 35.0%
TCTATTGTAGAAAGGCAATG+TGG - chr2.4:6001297-6001316 MS.gene31099:intron 35.0%
TCTTTAGGTGGAGTTAATGA+AGG - chr2.4:6001939-6001958 MS.gene31099:intron 35.0%
TGCTTATATATGAAACGGGA+GGG + chr2.4:6002843-6002862 None:intergenic 35.0%
TGGAGAGAATCACAACTAAA+AGG - chr2.4:6000170-6000189 MS.gene31099:CDS 35.0%
TGTAAGCTTCTTCAAGTAGT+TGG + chr2.4:6004337-6004356 None:intergenic 35.0%
TGTTTATGGAACAAGTTCTC+AGG + chr2.4:6002963-6002982 None:intergenic 35.0%
TTAACCGGAAAAGTCTTTCA+TGG - chr2.4:6002304-6002323 MS.gene31099:intron 35.0%
TTCTTGGATAAGTCAATTCG+AGG + chr2.4:6002504-6002523 None:intergenic 35.0%
TTGCTTATATATGAAACGGG+AGG + chr2.4:6002844-6002863 None:intergenic 35.0%
! AACTGAAGCTCTTTTCTACA+AGG + chr2.4:6001822-6001841 None:intergenic 35.0%
! ATGAGTTGGGATTCAATCAA+CGG + chr2.4:6001464-6001483 None:intergenic 35.0%
! CAATGCTGTTGGATTCTTTT+GGG + chr2.4:6001993-6002012 None:intergenic 35.0%
! CACTTGAAAGTAGTGCTATT+TGG + chr2.4:6000632-6000651 None:intergenic 35.0%
! GCCATATTTTACTCACCAAA+TGG + chr2.4:6000711-6000730 None:intergenic 35.0%
! GTGAAAGCATAAATTGCTAG+AGG + chr2.4:6003559-6003578 None:intergenic 35.0%
! TCCGATGACCATTATCATTT+TGG - chr2.4:6001501-6001520 MS.gene31099:intron 35.0%
! TGGGACAAGATATTTTTCAC+TGG - chr2.4:6001008-6001027 MS.gene31099:intron 35.0%
! TTGGTATCTGAAACATCATC+CGG - chr2.4:6003604-6003623 MS.gene31099:CDS 35.0%
!! AACTTGTTAAGATTCCATGG+AGG + chr2.4:6004314-6004333 None:intergenic 35.0%
!! AATTTTGGTGGCAAAGTATG+GGG - chr2.4:6001759-6001778 MS.gene31099:intron 35.0%
!! ATGAGAAAGTATTATGGGAG+TGG - chr2.4:6000128-6000147 MS.gene31099:CDS 35.0%
!! CTTGAAAGTAGTGCTATTTG+GGG + chr2.4:6000630-6000649 None:intergenic 35.0%
!! GAATTTTGGTGGCAAAGTAT+GGG - chr2.4:6001758-6001777 MS.gene31099:intron 35.0%
!! TCATGATTGCTGATTCAAGT+GGG + chr2.4:6003318-6003337 None:intergenic 35.0%
!! TGGAACTTGTTAAGATTCCA+TGG + chr2.4:6004317-6004336 None:intergenic 35.0%
!!! ACTACACTGATTTTTGGTTC+AGG - chr2.4:6004285-6004304 MS.gene31099:CDS 35.0%
!!! TGGTCTCTTTTAGGTTCATT+TGG + chr2.4:6003203-6003222 None:intergenic 35.0%
!!! TTTCCTGCTTTTTACCAATG+TGG + chr2.4:6001845-6001864 None:intergenic 35.0%
AAAATGGATGGCTGGTAAAG+AGG - chr2.4:6000442-6000461 MS.gene31099:intron 40.0%
AAAGAGCTTCAGTTCCACAT+TGG - chr2.4:6001828-6001847 MS.gene31099:intron 40.0%
AACAATCCTTGCAATGCTGT+TGG + chr2.4:6002004-6002023 None:intergenic 40.0%
AAGAATCCAACAGCATTGCA+AGG - chr2.4:6001995-6002014 MS.gene31099:intron 40.0%
AAGTCAATTCGAGGCACAAT+TGG + chr2.4:6002495-6002514 None:intergenic 40.0%
ACCTAATGTCAAAGAATCGG+TGG - chr2.4:6002065-6002084 MS.gene31099:intron 40.0%
AGCTTGAGAGAGAAGTTAAG+TGG + chr2.4:6003768-6003787 None:intergenic 40.0%
AGGTGGAGTTAATGAAGGAA+GGG - chr2.4:6001944-6001963 MS.gene31099:intron 40.0%
AGTCCTAAAACCTTCAGAGT+TGG - chr2.4:6000872-6000891 MS.gene31099:CDS 40.0%
AGTCGGCTACATCATAAAAC+CGG + chr2.4:6003847-6003866 None:intergenic 40.0%
ATTATGAGGACTAGACCAAG+AGG + chr2.4:6000672-6000691 None:intergenic 40.0%
ATTCACCAACTCCTCCAAAT+GGG + chr2.4:6004190-6004209 None:intergenic 40.0%
ATTCAGTCACCATAAAGCTG+TGG - chr2.4:6004250-6004269 MS.gene31099:CDS 40.0%
ATTGAAGGTGGACCAGAAAT+TGG - chr2.4:6000963-6000982 MS.gene31099:CDS 40.0%
CAAAACACTGCAGAGAAGAT+TGG - chr2.4:6003585-6003604 MS.gene31099:CDS 40.0%
CACAGACTAGTGAATGAGTT+GGG + chr2.4:6001477-6001496 None:intergenic 40.0%
CTTCCCTAAATCCTTCTTGA+GGG + chr2.4:6000240-6000259 None:intergenic 40.0%
CTTTGACATTAGGTTCACTG+AGG + chr2.4:6002059-6002078 None:intergenic 40.0%
GAAGGCGAGCTATAGAAATA+AGG + chr2.4:6002789-6002808 None:intergenic 40.0%
GAGGAGACTCTTGATTCTAT+TGG + chr2.4:6002040-6002059 None:intergenic 40.0%
GCATCGTAAGTCGATTGTAT+AGG - chr2.4:6003929-6003948 MS.gene31099:intron 40.0%
GGCATTAAGATCATTGAAGG+TGG - chr2.4:6000951-6000970 MS.gene31099:CDS 40.0%
GTGGATTTGGCAAGTATCAT+GGG - chr2.4:6004210-6004229 MS.gene31099:intron 40.0%
GTTCCACATTGGTAAAAAGC+AGG - chr2.4:6001839-6001858 MS.gene31099:intron 40.0%
TAGGTGGAGTTAATGAAGGA+AGG - chr2.4:6001943-6001962 MS.gene31099:intron 40.0%
TATGGAACAAGTTCTCAGGA+GGG + chr2.4:6002959-6002978 None:intergenic 40.0%
TCACAGACTAGTGAATGAGT+TGG + chr2.4:6001478-6001497 None:intergenic 40.0%
TCCTTCAAAAAATGGATGGC+TGG - chr2.4:6000434-6000453 MS.gene31099:intron 40.0%
TGGGATTCAATCAACGGTTA+CGG + chr2.4:6001458-6001477 None:intergenic 40.0%
TGTAGAAAGGCAATGTGGAA+TGG - chr2.4:6001302-6001321 MS.gene31099:intron 40.0%
TGTGGATTTGGCAAGTATCA+TGG - chr2.4:6004209-6004228 MS.gene31099:intron 40.0%
TTATGGAACAAGTTCTCAGG+AGG + chr2.4:6002960-6002979 None:intergenic 40.0%
! ATATTAGGAAGTGCACGAGT+GGG - chr2.4:6001127-6001146 MS.gene31099:intron 40.0%
! GATGGCTGTGAAACGAATTT+TGG - chr2.4:6001744-6001763 MS.gene31099:intron 40.0%
! GCAATGCTGTTGGATTCTTT+TGG + chr2.4:6001994-6002013 None:intergenic 40.0%
! GTCAAAGAATCGGTGGTTTT+TGG - chr2.4:6002072-6002091 MS.gene31099:intron 40.0%
! GTGTCCATGAAAGACTTTTC+CGG + chr2.4:6002311-6002330 None:intergenic 40.0%
! TATATTAGGAAGTGCACGAG+TGG - chr2.4:6001126-6001145 MS.gene31099:intron 40.0%
! TGGTATCTGAAACATCATCC+GGG - chr2.4:6003605-6003624 MS.gene31099:CDS 40.0%
!! AAAGAATCGGTGGTTTTTGG+TGG - chr2.4:6002075-6002094 MS.gene31099:intron 40.0%
!! ACCACCGATTCTTTGACATT+AGG + chr2.4:6002069-6002088 None:intergenic 40.0%
!! ACTCCTATAACTCTGGAGTT+AGG - chr2.4:6001184-6001203 MS.gene31099:CDS 40.0%
!! ATGATTGCTGATTCAAGTGG+GGG + chr2.4:6003316-6003335 None:intergenic 40.0%
!! CATGATTGCTGATTCAAGTG+GGG + chr2.4:6003317-6003336 None:intergenic 40.0%
!! CGAATTTTGGTGGCAAAGTA+TGG - chr2.4:6001757-6001776 MS.gene31099:intron 40.0%
!! CTCCTATAACTCTGGAGTTA+GGG - chr2.4:6001185-6001204 MS.gene31099:CDS 40.0%
!! GTCATGATTGCTGATTCAAG+TGG + chr2.4:6003319-6003338 None:intergenic 40.0%
!! TACAGTGATAATGGGAAGCA+CGG + chr2.4:6003359-6003378 None:intergenic 40.0%
!! TCCTATAACTCTGGAGTTAG+GGG - chr2.4:6001186-6001205 MS.gene31099:CDS 40.0%
!! TGTTGAGGCTTTTAGAGATG+AGG - chr2.4:6000265-6000284 MS.gene31099:CDS 40.0%
!! TTTAGGGAAGCATCATGTTG+AGG - chr2.4:6000250-6000269 MS.gene31099:CDS 40.0%
!!! ACCAGCCATCCATTTTTTGA+AGG + chr2.4:6000438-6000457 None:intergenic 40.0%
!!! TTTTGTAACAGGAGTGTCCT+TGG - chr2.4:6000812-6000831 MS.gene31099:intron 40.0%
AAGGCCCTCAAGAAGGATTT+AGG - chr2.4:6000233-6000252 MS.gene31099:CDS 45.0%
AGGAGTTGCTCTCCAATTTC+TGG + chr2.4:6000978-6000997 None:intergenic 45.0%
AGGCCCTCAAGAAGGATTTA+GGG - chr2.4:6000234-6000253 MS.gene31099:CDS 45.0%
CAATTCGAGGCACAATTGGT+TGG + chr2.4:6002491-6002510 None:intergenic 45.0%
CAGGTGGAGAAGATTGAAGA+CGG - chr2.4:6003505-6003524 MS.gene31099:CDS 45.0%
CATTCACCAACTCCTCCAAA+TGG + chr2.4:6004191-6004210 None:intergenic 45.0%
CGGTGTGCAACCTAACAATT+CGG + chr2.4:6001438-6001457 None:intergenic 45.0%
GAAAGTGAATCAACCAGTGC+TGG + chr2.4:6001220-6001239 None:intergenic 45.0%
GAAATTGTTGCTGAGCCTCT+TGG - chr2.4:6000654-6000673 MS.gene31099:intron 45.0%
GATTGTTATGTCTGCAGCAG+TGG - chr2.4:6001153-6001172 MS.gene31099:CDS 45.0%
GCAGCTATGGCTCCAATTAA+TGG + chr2.4:6000840-6000859 None:intergenic 45.0%
GCATCTCACTCCTATAACTC+TGG - chr2.4:6001177-6001196 MS.gene31099:CDS 45.0%
GCTTCCCTAAATCCTTCTTG+AGG + chr2.4:6000241-6000260 None:intergenic 45.0%
GGGGGATCCAGTAATATTGT+TGG + chr2.4:6003298-6003317 None:intergenic 45.0%
GTGTCCTTGGAGCCATTAAT+TGG - chr2.4:6000825-6000844 MS.gene31099:intron 45.0%
TGCAACATTTCCAGCAGCTA+TGG + chr2.4:6000853-6000872 None:intergenic 45.0%
TTAATTGGAGCCATAGCTGC+TGG - chr2.4:6000840-6000859 MS.gene31099:intron 45.0%
TTCAACTTCTTGGGACAGAG+AGG - chr2.4:6001237-6001256 MS.gene31099:intron 45.0%
TTCTCCTAGCCACAGCTTTA+TGG + chr2.4:6004262-6004281 None:intergenic 45.0%
! AGTTCTCAGGAGGGATGTTT+TGG + chr2.4:6002950-6002969 None:intergenic 45.0%
! GGCTGTGAAACGAATTTTGG+TGG - chr2.4:6001747-6001766 MS.gene31099:intron 45.0%
! TATTAGGAAGTGCACGAGTG+GGG - chr2.4:6001128-6001147 MS.gene31099:intron 45.0%
! TTTGGTTCAGGTTTCCTCCA+TGG - chr2.4:6004297-6004316 MS.gene31099:CDS 45.0%
!! ACAGTGATAATGGGAAGCAC+GGG + chr2.4:6003358-6003377 None:intergenic 45.0%
!! ATAGCGGATACCATCCCATT+TGG - chr2.4:6004173-6004192 MS.gene31099:intron 45.0%
!! CCTATAACTCTGGAGTTAGG+GGG - chr2.4:6001187-6001206 MS.gene31099:CDS 45.0%
!! GGAGTTGGTGAATGTGGATT+TGG - chr2.4:6004197-6004216 MS.gene31099:intron 45.0%
!! TTTGGAGGAGTTGGTGAATG+TGG - chr2.4:6004191-6004210 MS.gene31099:intron 45.0%
!! TAAAATTTAAATTTATTCAA+AGG - chr2.4:6003002-6003021 MS.gene31099:intron 5.0%
!! TTAAAAAAATAAATAAAATC+GGG + chr2.4:6001688-6001707 None:intergenic 5.0%
!!! ATATTAATAAAACTTTTTTT+AGG + chr2.4:6001531-6001550 None:intergenic 5.0%
ACCAACTCCTCCAAATGGGA+TGG + chr2.4:6004186-6004205 None:intergenic 50.0%
ACCATCCCATTTGGAGGAGT+TGG - chr2.4:6004182-6004201 MS.gene31099:intron 50.0%
CCCCCTAACTCCAGAGTTAT+AGG + chr2.4:6001190-6001209 None:intergenic 50.0%
GAAGTAAGGGCCAACTCTGA+AGG + chr2.4:6000885-6000904 None:intergenic 50.0%
GATCTTGAAGGCCCTCAAGA+AGG - chr2.4:6000226-6000245 MS.gene31099:CDS 50.0%
GGAGTTCTCAGTGGAAGCTT+TGG - chr2.4:6000088-6000107 MS.gene31099:CDS 50.0%
GGCTCCAATTAATGGCTCCA+AGG + chr2.4:6000832-6000851 None:intergenic 50.0%
GTCACCATAAAGCTGTGGCT+AGG - chr2.4:6004255-6004274 MS.gene31099:CDS 50.0%
!! GGGCCAACTCTGAAGGTTTT+AGG + chr2.4:6000878-6000897 None:intergenic 50.0%
AGGGGGAAAATGTCCAGCAC+TGG - chr2.4:6001204-6001223 MS.gene31099:CDS 55.0%
GCAAAGTATGGGGCTTGTGC+AGG - chr2.4:6001769-6001788 MS.gene31099:intron 55.0%
GCGGATACCATCCCATTTGG+AGG - chr2.4:6004176-6004195 MS.gene31099:intron 55.0%
! TAGGAAGTGCACGAGTGGGG+AGG - chr2.4:6001131-6001150 MS.gene31099:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 6000086 6004436 6000086 ID=MS.gene31099
chr2.4 mRNA 6000086 6004436 6000086 ID=MS.gene31099.t1;Parent=MS.gene31099
chr2.4 exon 6004236 6004436 6004236 ID=MS.gene31099.t1.exon1;Parent=MS.gene31099.t1
chr2.4 CDS 6004236 6004436 6004236 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6004059 6004127 6004059 ID=MS.gene31099.t1.exon2;Parent=MS.gene31099.t1
chr2.4 CDS 6004059 6004127 6004059 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6003808 6003904 6003808 ID=MS.gene31099.t1.exon3;Parent=MS.gene31099.t1
chr2.4 CDS 6003808 6003904 6003808 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6003493 6003699 6003493 ID=MS.gene31099.t1.exon4;Parent=MS.gene31099.t1
chr2.4 CDS 6003493 6003699 6003493 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6003264 6003388 6003264 ID=MS.gene31099.t1.exon5;Parent=MS.gene31099.t1
chr2.4 CDS 6003264 6003388 6003264 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6002673 6002777 6002673 ID=MS.gene31099.t1.exon6;Parent=MS.gene31099.t1
chr2.4 CDS 6002673 6002777 6002673 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6002404 6002576 6002404 ID=MS.gene31099.t1.exon7;Parent=MS.gene31099.t1
chr2.4 CDS 6002404 6002576 6002404 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6001147 6001237 6001147 ID=MS.gene31099.t1.exon8;Parent=MS.gene31099.t1
chr2.4 CDS 6001147 6001237 6001147 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6000865 6001014 6000865 ID=MS.gene31099.t1.exon9;Parent=MS.gene31099.t1
chr2.4 CDS 6000865 6001014 6000865 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
chr2.4 exon 6000086 6000352 6000086 ID=MS.gene31099.t1.exon10;Parent=MS.gene31099.t1
chr2.4 CDS 6000086 6000352 6000086 ID=cds.MS.gene31099.t1;Parent=MS.gene31099.t1
Gene Sequence

>MS.gene31099

ATGGAGTTCTCAGTGGAAGCTTTGGAGAGAGATATAAAGAACATGAGAAAGTATTATGGGAGTGGAAAAACAAAAGAAGCATCATGGAGAGAATCACAACTAAAAGGGTTGCGTAACTTTGTCAAAGAAAATGAGGAAGAGATCTTGAAGGCCCTCAAGAAGGATTTAGGGAAGCATCATGTTGAGGCTTTTAGAGATGAGGTGTGTTTCTTATTCTACTTGCTACTCTTATAATAGTAATATGTATATGTATATTTCTGTTTAATTTGGTTTGCTTAATTAATCCATATGTATATATATAATTTGCAGGTTGGAACGTTAAAGAAATCCATTGATTTGGCAATAAAGTCCTTCAAAAAATGGATGGCTGGTAAAGAGGTTAGTTTATATATGTACAACACATGCAAAACAAATGAGAAAAGTATATATTTTTTATTTCCATTATATTTAGTTTATTGAAAAGAAGAACAGTTGCACCATACTTTTACATGAAATTAAAGAACCGTGTGCCTTATTATTTTCAACTTAACAGGCTAAACTGCCCCAAATAGCACTACTTTCAAGTGCAGAAATTGTTGCTGAGCCTCTTGGTCTAGTCCTCATAATCTCATCATGGAATTTTCCATTTGGTGAGTAAAATATGGCTGCAGACATAAAATAAACTTTTAGTATATACAAATTAAATCTATAAAAAAAAATTAAGTTCAAAGTTGTGTTTCTCTTGGTTTTTGTAACAGGAGTGTCCTTGGAGCCATTAATTGGAGCCATAGCTGCTGGAAATGTTGCAGTCCTAAAACCTTCAGAGTTGGCCCTTACTTCTTCTTCTCTTCTAGCCACTGTTCTACCAAATTATTTGGACAATAAAGGCATTAAGATCATTGAAGGTGGACCAGAAATTGGAGAGCAACTCCTACATAAAAAATGGGACAAGATATTTTTCACTGGTCAACCTTACTATTTCTTTTACCTTCTTGCTTTTCATTTCAATTTTCTTAACTTTTGATAAAAAAAATTAATTAATTAAACTTGTAATGATCCAATATATTAGGAAGTGCACGAGTGGGGAGGATTGTTATGTCTGCAGCAGTGGAGCATCTCACTCCTATAACTCTGGAGTTAGGGGGAAAATGTCCAGCACTGGTTGATTCACTTTCAACTTCTTGGGACAGAGAGGTACATGTTCATTTAATCTTGTCACATGGAATGTACCTTCTATTGTAGAAAGGCAATGTGGAATGGACAAAACAAAAGTAGCAAATTAATGAAGGACAAGAAAAAAAAAAAAAAAAAAAAGAGTTATTTTTCGTTCCATTAAGTTTTATTAATATAGGACACAAGTCATAAAAATACCGAATTGTTAGGTTGCACACCGTAACCGTTGATTGAATCCCAACTCATTCACTAGTCTGTGAATTTCCGATGACCATTATCATTTTGGTCTACCTAAAAAAAGTTTTATTAATATAAACTAAGGAGTCCAGAATGACTATATGTTAGGAGTTTGAACTTATAATCTCAAATGAAAGAGTTTAAATCTTTTCTAGGACATTCGCAAAATGATCGGTGATAACACTTTAACTAATAACAATTTTTTTCTTCCCCGATTTTATTTATTTTTTTAAACTGCTTACAAGATTTTTATTTCTGTTGAACAATAAGATGGCTGTGAAACGAATTTTGGTGGCAAAGTATGGGGCTTGTGCAGGACAAGCATGCATAGCAATTGATTATGTCCTTGTAGAAAAGAGCTTCAGTTCCACATTGGTAAAAAGCAGGAAATAATTTTTTTAAAAGTTTTTTATTATGCTGCAATTACACTATTAATCTTGAAGCATTACTCCTTTGTTTTATTCTCTTTAGGTGGAGTTAATGAAGGAAGGGATTAAAAAAATGTTTGGAGACAACCCAAAAGAATCCAACAGCATTGCAAGGATTGTTAATAAACAACATTCCAATAGAATCAAGAGTCTCCTCAGTGAACCTAATGTCAAAGAATCGGTGGTTTTTGGTGGTTCTATGCACGATGATGACTTGTATGCAATTAATACTCTCTTTTCTTAGTTGCTTGAATGTTCGACGAAGTTTTAAATTCACGGATCATCATTTAATCTCTAAAAATTAGAATTGATTTTTAAAATTAACAGAATTTTAAAAAATATCATTGAATTTATAAAACTTTATTCTCATTAGATTCTATCACACAATTTAAATGATTGAATTAACCGGAAAAGTCTTTCATGGACACATTCCCAAATAAATATTATTTGGACACACTCACATGAAATTAATAAAACTAAATAAAAAGTATTTAATCATATCAATTGATATCTTGTAATTTTATTTTCCTTTAATTTTTTCTTGATTTTGTATGTGTGACCAAATATTTTTATTTGGGTTTGTGTCCAACCAATTGTGCCTCGAATTGACTTATCCAAGAATGACTAAATGAGAAATTTTAAATATTAAGAATTTTTTCTTCAAAAAATATTAAGAATTTTAATAACTAAATTCACTTGTTTTACATTATAGAACAAGATTTTTTTCCTCTTAAGAATTTTAGGATGGTTTAGTTTCCATATTTCATGTTTTCACCTTGACTTCAAATAATAAACATAAAATGATATAGATTTGATATTTTTCTAAATATTTTCTTGAATAATATTTGAAAATGTGAAAACATTTTCCTTGTTTTTTTTAATACCTTATTTCTATAGCTCGCCTTCTTTCTTCTTTCTATTACAACTGTTCATTGTTCCCTCCCGTTTCATATATAAGCAATCAAAACTAACTTACACCCTTTAAAAAAAAGTAGTTAACTTTATTTAATTTTCTCAAAGTAACAGAAAAAATAATTGTATTCTCCAAAACATCCCTCCTGAGAACTTGTTCCATAAACATTATAGAGTTTTTGAAAAGTAAAATTTAAATTTATTCAAAGGTATTTTAGGAATGATAGCATTAACTATGGTAAAGTAAGAGAACATGCATCCAAAGAAAAAGAAAAAACAACTTAAAACTCGAAATCCTTGTAAAATGTACAATTTTCCCAGAGAATCTATGTACAAAAAAAAAAAAATTGAGAAATATAAAAACCTAAAAAAATGTTTTCAAAAGCCAAATGAACCTAAAAGAGACCAATTTTTCCTTACATGATTATCTTTATGATCAAAAGTATTTTTTGCACTGAAATCTTATGTAGATTTATGGAACCAACAATATTACTGGATCCCCCACTTGAATCAGCAATCATGACAGAAGAAATCTTTGGTCCCGTGCTTCCCATTATCACTGTAAGATAAGTACAATATTTTGTTTTTCTTCCTTATTTTAGTCCTTTTTAATCAGTATTCTTCAAAAGTGTCAAGGCAAGTGATTCATTAGCCAAATGTTAACCAAGTTTAGTTTCAATTGTTTATTTGCAGGTGGAGAAGATTGAAGACGGTATTGAGTTCATAAACTCAAAGCCTAAACCTCTAGCAATTTATGCTTTCACAAAGAACAAAACACTGCAGAGAAGATTGGTATCTGAAACATCATCCGGGAGCATTGTATTTAATGATGCAATTCTACAGGTATTTATTTGCTGATAGTGACTTACATTATCTTCATTAATTAAAAACCTAACATATTTTCACTACTATGAAACCAGTAAGGTTTTGTTTTGCAAGCTGCTAAACTTCCACTTAACTTCTCTCTCAAGCTTACAACATTTTTTCACGAGCTTATAACATTTTTTTTCTAAATTGAATCATCTATAACCGGTTTTATGATGTAGCCGACTATTTATATACGGTTAGATTAAGAAAGATGATTTTTCTTTCTTTTAACGGTCTTCAATCGACTGCATCGTAAGTCGATTGTATAGGATCCAAGTTTTTTTTAAGACTATTTAAGTAGTATTTGAACTTATAATTTATATTGTATTGTTTTTTCTCATTTTTACCCTCACTATCTTATTGTGAAAAGTAAATATTAACTAAAAATATATTTTTTCGTCATTAAATATTTATCACTTGTTTCAACCGTTAATTTTATCAAGAACACCAATTGGCATATGAAAGATAATTTTTTTTTTTTTTTGCAGTATATAGCGGATACCATCCCATTTGGAGGAGTTGGTGAATGTGGATTTGGCAAGTATCATGGGAAGTTCTCATTTGATGCATTCAGTCACCATAAAGCTGTGGCTAGGAGAAGTTACTACACTGATTTTTGGTTCAGGTTTCCTCCATGGAATCTTAACAAGTTCCAACTACTTGAAGAAGCTTACAATTTAAACTACATTGGAATACTTCTTGTTTTACTCGGCTTGAAGAGTTCAAAACGTTCATTATATGAGGCTTGTAAATGA
Protein sequence

>MS.gene31099.t1

MEFSVEALERDIKNMRKYYGSGKTKEASWRESQLKGLRNFVKENEEEILKALKKDLGKHHVEAFRDEVGTLKKSIDLAIKSFKKWMAGKEAKLPQIALLSSAEIVAEPLGLVLIISSWNFPFGVSLEPLIGAIAAGNVAVLKPSELALTSSSLLATVLPNYLDNKGIKIIEGGPEIGEQLLHKKWDKIFFTGSARVGRIVMSAAVEHLTPITLELGGKCPALVDSLSTSWDREMAVKRILVAKYGACAGQACIAIDYVLVEKSFSSTLVELMKEGIKKMFGDNPKESNSIARIVNKQHSNRIKSLLSEPNVKESVVFGGSMHDDDLFMEPTILLDPPLESAIMTEEIFGPVLPIITVEKIEDGIEFINSKPKPLAIYAFTKNKTLQRRLVSETSSGSIVFNDAILQYIADTIPFGGVGECGFGKYHGKFSFDAFSHHKAVARRSYYTDFWFRFPPWNLNKFQLLEEAYNLNYIGILLVLLGLKSSKRSLYEACK