AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052061

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052061.t1 MTR_2g097950 97.166 494 14 0 1 494 13 506 0.0 986
MS.gene052061.t1 MTR_2g097950 90.283 494 13 1 1 494 13 471 0.0 898
MS.gene052061.t1 MTR_4g065040 71.855 469 131 1 5 472 1 469 0.0 673
MS.gene052061.t1 MTR_8g076480 56.667 480 201 2 8 483 9 485 0.0 580
MS.gene052061.t1 MTR_1g029840 47.390 479 249 1 3 481 11 486 6.47e-163 470
MS.gene052061.t1 MTR_1g029840 47.599 479 248 1 3 481 11 486 5.32e-161 465
MS.gene052061.t1 MTR_8g094600 47.660 470 243 1 12 481 73 539 1.52e-158 461
MS.gene052061.t1 MTR_3g088150 46.138 479 255 1 3 481 13 488 5.52e-158 458
MS.gene052061.t1 MTR_1222s0010 34.309 376 234 7 12 384 9 374 4.77e-65 224
MS.gene052061.t1 MTR_1314s0010 31.871 342 220 4 108 441 1 337 7.69e-57 192
MS.gene052061.t1 MTR_2g034160 26.608 451 300 10 23 453 96 535 2.77e-40 153
MS.gene052061.t1 MTR_2g067660 29.060 351 237 9 104 448 178 522 3.25e-40 152
MS.gene052061.t1 MTR_3g078490 26.804 485 293 13 1 454 77 530 4.46e-33 132
MS.gene052061.t1 MTR_4g106510 28.698 453 290 14 23 454 60 500 9.30e-33 130
MS.gene052061.t1 MTR_3g078550 27.101 476 303 15 1 454 17 470 1.57e-32 129
MS.gene052061.t1 MTR_3g078550 27.101 476 303 15 1 454 47 500 2.20e-32 129
MS.gene052061.t1 MTR_6g086300 29.817 436 260 18 39 456 94 501 1.61e-29 121
MS.gene052061.t1 MTR_6g086300 29.817 436 260 18 39 456 94 501 1.61e-29 121
MS.gene052061.t1 MTR_4g107040 27.033 455 299 14 2 440 97 534 3.59e-29 120
MS.gene052061.t1 MTR_8g064170 27.902 448 296 14 6 440 98 531 2.53e-28 118
MS.gene052061.t1 MTR_4g020720 47.692 130 62 3 175 301 116 242 5.15e-28 113
MS.gene052061.t1 MTR_8g083530 27.044 477 296 16 2 456 56 502 6.06e-28 117
MS.gene052061.t1 MTR_3g078170 26.339 448 303 13 6 440 99 532 1.43e-26 113
MS.gene052061.t1 MTR_6g086340 27.962 422 271 16 39 445 92 495 7.51e-26 110
MS.gene052061.t1 MTR_4g131180 26.966 445 281 15 2 423 44 467 2.28e-25 109
MS.gene052061.t1 MTR_1g014320 28.923 325 207 10 108 423 158 467 1.66e-24 106
MS.gene052061.t1 MTR_4g131180 26.824 425 268 14 2 403 44 448 1.99e-23 103
MS.gene052061.t1 MTR_8g064170 27.069 447 269 16 6 440 98 499 1.55e-21 97.8
MS.gene052061.t1 MTR_2g042330 26.062 353 240 9 105 447 152 493 3.65e-19 90.5
MS.gene052061.t1 MTR_3g078170 26.016 369 248 12 6 361 99 455 6.75e-19 89.7
MS.gene052061.t1 MTR_8g083520 26.230 427 239 17 39 445 6 376 7.90e-19 88.6
MS.gene052061.t1 MTR_8g083520 25.917 436 247 17 30 445 77 456 1.43e-18 88.6
MS.gene052061.t1 MTR_2g009750 27.097 310 204 10 105 401 147 447 1.90e-17 85.5
MS.gene052061.t1 MTR_2g009750 27.097 310 203 10 105 401 146 445 2.65e-17 85.1
MS.gene052061.t1 MTR_2g009750 27.097 310 203 10 105 401 147 446 2.85e-17 84.7
MS.gene052061.t1 MTR_4g093170 26.774 310 205 10 105 401 174 474 5.01e-17 84.3
MS.gene052061.t1 MTR_4g020710 52.778 72 33 1 295 365 14 85 5.71e-17 77.8
MS.gene052061.t1 MTR_8g083530 29.779 272 167 9 2 262 56 314 1.52e-15 78.6
MS.gene052061.t1 MTR_3g078490 28.155 309 172 9 1 286 47 328 2.09e-15 78.2
MS.gene052061.t1 MTR_3g078170 25.806 341 228 12 6 333 99 427 6.88e-15 77.0
MS.gene052061.t1 MTR_3g078170 25.806 341 228 12 6 333 99 427 8.07e-15 77.0
MS.gene052061.t1 MTR_1690s0010 28.500 200 133 8 108 302 146 340 3.95e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052061.t1 AT4G36250 53.002 483 227 0 1 483 1 483 0.0 566
MS.gene052061.t1 AT1G44170 48.408 471 240 1 12 482 16 483 7.13e-163 470
MS.gene052061.t1 AT1G44170 48.408 471 240 1 12 482 16 483 7.13e-163 470
MS.gene052061.t1 AT4G34240 49.682 471 234 1 12 482 64 531 2.22e-158 461
MS.gene052061.t1 AT4G34240 49.682 471 234 1 12 482 79 546 5.91e-158 460
MS.gene052061.t1 AT1G44170 50.000 418 206 1 65 482 6 420 1.43e-149 434
MS.gene052061.t1 AT4G34240 51.724 406 193 1 77 482 2 404 3.86e-142 414
MS.gene052061.t1 AT4G34240 49.524 315 156 1 12 326 79 390 1.85e-97 300
MS.gene052061.t1 AT3G66658 27.406 478 312 11 23 471 96 567 7.01e-47 172
MS.gene052061.t1 AT3G66658 27.477 444 296 9 23 446 96 533 4.52e-46 169
MS.gene052061.t1 AT1G79440 30.460 348 222 9 104 441 184 521 5.49e-41 154
MS.gene052061.t1 AT1G74920 29.680 438 284 14 30 454 69 495 4.86e-36 140
MS.gene052061.t1 AT1G74920 29.680 438 284 14 30 454 74 500 6.96e-36 139
MS.gene052061.t1 AT3G48170 26.737 475 303 16 6 454 45 500 4.96e-31 125
MS.gene052061.t1 AT1G23800 27.434 452 301 14 2 440 87 524 3.25e-30 124
MS.gene052061.t1 AT3G48000 26.991 452 303 13 2 440 91 528 1.55e-27 116
MS.gene052061.t1 AT3G24503 27.529 425 278 17 30 440 83 491 1.09e-25 110
MS.gene052061.t1 AT2G24270 28.923 325 207 10 108 423 198 507 6.13e-24 105
MS.gene052061.t1 AT2G24270 28.923 325 207 10 108 423 158 467 1.17e-23 104
MS.gene052061.t1 AT2G24270 28.923 325 207 10 108 423 158 467 1.17e-23 104
MS.gene052061.t1 AT2G24270 28.923 325 207 10 108 423 158 467 1.19e-23 104
MS.gene052061.t1 AT1G54100 26.571 350 236 9 108 447 154 492 1.24e-18 89.0
MS.gene052061.t1 AT1G54100 26.571 350 236 9 108 447 154 492 1.24e-18 89.0
MS.gene052061.t1 AT1G23800 27.673 318 206 12 2 307 87 392 5.60e-15 77.4
MS.gene052061.t1 AT2G14170 23.288 438 298 12 29 443 58 480 3.56e-12 68.9
MS.gene052061.t1 AT2G14170 23.288 438 298 12 29 443 167 589 4.18e-12 68.9
MS.gene052061.t1 AT2G14170 23.919 393 272 10 29 404 167 549 2.50e-11 66.6

Find 109 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTATGTAGATTTA+TGG 0.118638 2.2:-4672048 MS.gene052061:intron
CACTGTTCTACCAAATTATT+TGG 0.132543 2.2:-4674392 MS.gene052061:CDS
TACTTATCTTACAGTGATTA+TGG 0.138309 2.2:+4671953 None:intergenic
CACTTGAAAGTAGTGCTATT+TGG 0.163353 2.2:+4674688 None:intergenic
TTCTCCTAGCCACAGCTTTA+TGG 0.164740 2.2:+4671058 None:intergenic
AAGGCCCTCAAGAAGGATTT+AGG 0.176467 2.2:-4675082 MS.gene052061:CDS
AGGAGTTGCTCTCCAATTTC+TGG 0.180506 2.2:+4674337 None:intergenic
CCATTATTGTCCAAATAATT+TGG 0.194174 2.2:+4674382 None:intergenic
GCAATGCTGTTGGATTCTTT+TGG 0.215212 2.2:+4673323 None:intergenic
TTGATTCACTTTCAACTTCT+TGG 0.229573 2.2:-4674085 MS.gene052061:CDS
ACTTGAAAGTAGTGCTATTT+GGG 0.262171 2.2:+4674689 None:intergenic
TGGAGAGAATCACAACTAAA+AGG 0.262228 2.2:-4675145 MS.gene052061:CDS
CCAAATTATTTGGACAATAA+TGG 0.270029 2.2:-4674382 MS.gene052061:CDS
TATGGAACCAACAATATTAC+TGG 0.285040 2.2:-4672030 MS.gene052061:CDS
GCATAAATTGCTAGAGGTTT+AGG 0.288414 2.2:+4671768 None:intergenic
GATGGCTGTGAAACGAATTT+TGG 0.298929 2.2:-4673570 MS.gene052061:CDS
GTGTCCTTGGAGCCATTAAT+TGG 0.298989 2.2:-4674487 MS.gene052061:CDS
ATTGAAGGTGGACCAGAAAT+TGG 0.299642 2.2:-4674349 MS.gene052061:CDS
GTTAAAGAAATCCATTGATT+TGG 0.305202 2.2:-4674912 MS.gene052061:CDS
AAGAACATGAGAAAGTATTA+TGG 0.305368 2.2:-4675193 MS.gene052061:CDS
GCAGCTATGGCTCCAATTAA+TGG 0.306017 2.2:+4674475 None:intergenic
ACTCCTATAACTCTGGAGTT+AGG 0.328012 2.2:-4674128 MS.gene052061:CDS
GAGGAGACTCTTGATTCTAT+TGG 0.336102 2.2:+4673277 None:intergenic
TGTAAGCTTCTTCAAGTAGT+TGG 0.339552 2.2:+4670983 None:intergenic
TGATTCACTTTCAACTTCTT+GGG 0.343615 2.2:-4674084 MS.gene052061:CDS
GGAGTTCTCAGTGGAAGCTT+TGG 0.372513 2.2:-4675227 MS.gene052061:CDS
CTCCTATAACTCTGGAGTTA+GGG 0.372962 2.2:-4674127 MS.gene052061:CDS
TTCAAAACGTTCATTATATG+AGG 0.382788 2.2:-4670914 MS.gene052061:CDS
ACCACCGATTCTTTGACATT+AGG 0.390930 2.2:+4673248 None:intergenic
ACTTATCTTACAGTGATTAT+GGG 0.400023 2.2:+4671954 None:intergenic
AGGCCCTCAAGAAGGATTTA+GGG 0.400687 2.2:-4675081 MS.gene052061:CDS
GGACTTTATTGCCAAATCAA+TGG 0.403173 2.2:+4674901 None:intergenic
AGAACATGAGAAAGTATTAT+GGG 0.405722 2.2:-4675192 MS.gene052061:CDS
GGAGTTGGTGAATGTGGATT+TGG 0.413532 2.2:-4671120 MS.gene052061:CDS
ACCATCCCATTTGGAGGAGT+TGG 0.443845 2.2:-4671135 MS.gene052061:CDS
ATAGCGGATACCATCCCATT+TGG 0.449228 2.2:-4671144 MS.gene052061:CDS
AACAATCCTTGCAATGCTGT+TGG 0.454731 2.2:+4673313 None:intergenic
ATTTAATGATGCAATTCTAC+AGG 0.457393 2.2:-4671682 MS.gene052061:intron
GAAATTGTTGCTGAGCCTCT+TGG 0.457989 2.2:-4674663 MS.gene052061:CDS
TTTGGTTCAGGTTTCCTCCA+TGG 0.459950 2.2:-4671020 MS.gene052061:CDS
CTTCCCTAAATCCTTCTTGA+GGG 0.460635 2.2:+4675078 None:intergenic
CATTCACCAACTCCTCCAAA+TGG 0.461138 2.2:+4671129 None:intergenic
ATCATGACAGAAGAAATCTT+TGG 0.467373 2.2:-4671987 MS.gene052061:CDS
CAAAACACTGCAGAGAAGAT+TGG 0.468898 2.2:-4671733 MS.gene052061:CDS
GCATCTCACTCCTATAACTC+TGG 0.477082 2.2:-4674135 MS.gene052061:CDS
TTGGTATCTGAAACATCATC+CGG 0.480961 2.2:-4671714 MS.gene052061:CDS
TGGAACTTGTTAAGATTCCA+TGG 0.484735 2.2:+4671003 None:intergenic
GCTTACAATTTAAACTACAT+TGG 0.487149 2.2:-4670967 MS.gene052061:CDS
TAGGTGGAGTTAATGAAGGA+AGG 0.488749 2.2:-4673371 MS.gene052061:CDS
GCAAAGTATGGGGCTTGTGC+AGG 0.494839 2.2:-4673545 MS.gene052061:CDS
TGCAACATTTCCAGCAGCTA+TGG 0.497942 2.2:+4674462 None:intergenic
AATTCCATGATGAGATTATG+AGG 0.500503 2.2:+4674634 None:intergenic
AAAATGGATGGCTGGTAAAG+AGG 0.500707 2.2:-4674873 MS.gene052061:intron
TCTTTAGGTGGAGTTAATGA+AGG 0.502645 2.2:-4673375 MS.gene052061:intron
AATGGCATTAAGATCATTGA+AGG 0.505160 2.2:-4674364 MS.gene052061:CDS
GGAGAGAATCACAACTAAAA+GGG 0.505316 2.2:-4675144 MS.gene052061:CDS
GCTTCCCTAAATCCTTCTTG+AGG 0.505953 2.2:+4675077 None:intergenic
AGGTGGAGTTAATGAAGGAA+GGG 0.506548 2.2:-4673370 MS.gene052061:CDS
TGTGGATTTGGCAAGTATCA+TGG 0.509305 2.2:-4671108 MS.gene052061:CDS
CTAGAAGAGAAGAAGAAGTA+GGG 0.517439 2.2:+4674416 None:intergenic
ATGAGAAAGTATTATGGGAG+TGG 0.517718 2.2:-4675187 MS.gene052061:CDS
GCTAGAAGAGAAGAAGAAGT+AGG 0.519054 2.2:+4674415 None:intergenic
TGAACCTAATGTCAAAGAAT+CGG 0.526059 2.2:-4673252 MS.gene052061:CDS
GAAAGTGAATCAACCAGTGC+TGG 0.531970 2.2:+4674095 None:intergenic
AAATGAGGAAGAGATCTTGA+AGG 0.532562 2.2:-4675101 MS.gene052061:CDS
GATTGTTATGTCTGCAGCAG+TGG 0.533250 2.2:-4674159 MS.gene052061:CDS
ATTCACCAACTCCTCCAAAT+GGG 0.535804 2.2:+4671130 None:intergenic
TTAATTGGAGCCATAGCTGC+TGG 0.536986 2.2:-4674472 MS.gene052061:CDS
GTGGATTTGGCAAGTATCAT+GGG 0.538798 2.2:-4671107 MS.gene052061:CDS
ATCATTAAATACAATGCTCC+CGG 0.543496 2.2:+4671695 None:intergenic
TTTGGAGGAGTTGGTGAATG+TGG 0.544032 2.2:-4671126 MS.gene052061:CDS
TCCTATAACTCTGGAGTTAG+GGG 0.551937 2.2:-4674126 MS.gene052061:CDS
TAACTTTGTCAAAGAAAATG+AGG 0.553225 2.2:-4675116 MS.gene052061:CDS
GCGGATACCATCCCATTTGG+AGG 0.558921 2.2:-4671141 MS.gene052061:CDS
TACAGTGATTATGGGAAGCA+CGG 0.561570 2.2:+4671962 None:intergenic
GTCATGATTGCTGATTCAAG+TGG 0.562929 2.2:+4672002 None:intergenic
AGTCCTAAAACCTTCAGAGT+TGG 0.563574 2.2:-4674440 MS.gene052061:CDS
GAAGTAGGGGCCAACTCTGA+AGG 0.570056 2.2:+4674430 None:intergenic
TAGTCCTCATAATCTCATCA+TGG 0.574613 2.2:-4674638 MS.gene052061:CDS
GGCTCCAATTAATGGCTCCA+AGG 0.575676 2.2:+4674483 None:intergenic
GTGAAAGCATAAATTGCTAG+AGG 0.575786 2.2:+4671762 None:intergenic
GATCTTGAAGGCCCTCAAGA+AGG 0.580261 2.2:-4675089 MS.gene052061:CDS
ATATTAGGAAGTGCACGAGT+GGG 0.582326 2.2:-4674185 MS.gene052061:intron
TTTAGGGAAGCATCATGTTG+AGG 0.599307 2.2:-4675065 MS.gene052061:CDS
TATATTAGGAAGTGCACGAG+TGG 0.599974 2.2:-4674186 MS.gene052061:intron
AAAGAGCTTCAGTTCCACAT+TGG 0.608853 2.2:-4673486 MS.gene052061:intron
ACCAACTCCTCCAAATGGGA+TGG 0.608963 2.2:+4671134 None:intergenic
TCATGATTGCTGATTCAAGT+GGG 0.615088 2.2:+4672003 None:intergenic
GGCATTAAGATCATTGAAGG+TGG 0.617998 2.2:-4674361 MS.gene052061:CDS
ACAGTGATTATGGGAAGCAC+GGG 0.618850 2.2:+4671963 None:intergenic
ACCTAATGTCAAAGAATCGG+TGG 0.620390 2.2:-4673249 MS.gene052061:CDS
AAGAATCCAACAGCATTGCA+AGG 0.622783 2.2:-4673319 MS.gene052061:CDS
TAGAAGAGAAGAAGAAGTAG+GGG 0.625377 2.2:+4674417 None:intergenic
TAGGAAGTGCACGAGTGGGG+AGG 0.625912 2.2:-4674181 MS.gene052061:CDS
GTCACCATAAAGCTGTGGCT+AGG 0.633443 2.2:-4671062 MS.gene052061:CDS
TGGTATCTGAAACATCATCC+GGG 0.645652 2.2:-4671713 MS.gene052061:CDS
TATTAGGAAGTGCACGAGTG+GGG 0.646738 2.2:-4674184 MS.gene052061:intron
CAGGTGGAGAAGATTGAAGA+CGG 0.650633 2.2:-4671813 MS.gene052061:CDS
TTCAACTTCTTGGGACAGAG+AGG 0.650826 2.2:-4674075 MS.gene052061:intron
CAAATAATTTGGTAGAACAG+TGG 0.655707 2.2:+4674393 None:intergenic
ATGATTGCTGATTCAAGTGG+GGG 0.665274 2.2:+4672005 None:intergenic
CTTGAAAGTAGTGCTATTTG+GGG 0.666143 2.2:+4674690 None:intergenic
CCTATAACTCTGGAGTTAGG+GGG 0.670137 2.2:-4674125 MS.gene052061:CDS
TGGTAACATGGAGTTCTCAG+TGG 0.677211 2.2:-4675236 None:intergenic
CATGATTGCTGATTCAAGTG+GGG 0.687119 2.2:+4672004 None:intergenic
CTTTGACATTAGGTTCACTG+AGG 0.691733 2.2:+4673258 None:intergenic
ATTCAGTCACCATAAAGCTG+TGG 0.694399 2.2:-4671067 MS.gene052061:CDS
ATTATGAGGACTAGACCAAG+AGG 0.704548 2.2:+4674648 None:intergenic
AACTTGTTAAGATTCCATGG+AGG 0.758325 2.2:+4671006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAATAAATAAAAT+CGG + chr2.2:4672507-4672526 None:intergenic 0.0%
!! TAAAAAAATAAATAAAATCG+GGG + chr2.2:4672505-4672524 None:intergenic 10.0%
!! TTTCAATAAACTAAATATAA+TGG + chr2.2:4671344-4671363 None:intergenic 10.0%
!!! AGTTTTATTAATATAAACTA+AGG - chr2.2:4672355-4672374 MS.gene052061:intron 10.0%
!! ATCATAAATATAATCATGTA+AGG + chr2.2:4674046-4674065 None:intergenic 15.0%
!! ATTCCCAAATAAATATTATT+TGG - chr2.2:4673149-4673168 MS.gene052061:intron 15.0%
!! ATTTAAATGATTGAATTAAC+CGG - chr2.2:4673107-4673126 MS.gene052061:intron 15.0%
!! CAAAATCAAGAAAAAATTAA+AGG + chr2.2:4673251-4673270 None:intergenic 15.0%
!! CCTATATTAATAAAACTTAA+TGG + chr2.2:4672215-4672234 None:intergenic 15.0%
!! GCAAATTATATATATACATA+TGG + chr2.2:4671190-4671209 None:intergenic 15.0%
!! TGTCCAAATAATATTTATTT+GGG + chr2.2:4673155-4673174 None:intergenic 15.0%
!!! AAATAGTCTTAAAAAAAACT+TGG + chr2.2:4674770-4674789 None:intergenic 15.0%
!!! AATTTATTCAAAGGTATTTT+AGG - chr2.2:4673829-4673848 MS.gene052061:intron 15.0%
!!! AGTTAACTACTTTTTTTTAA+AGG + chr2.2:4673702-4673721 None:intergenic 15.0%
!!! ATAAGGTATTAAAAAAAACA+AGG + chr2.2:4673590-4673609 None:intergenic 15.0%
!!! ATGATTTTTCTTTCTTTTAA+CGG - chr2.2:4674706-4674725 MS.gene052061:intron 15.0%
!!! ATGTATATTTCTGTTTAATT+TGG - chr2.2:4671150-4671169 MS.gene052061:CDS 15.0%
!!! CCATTAAGTTTTATTAATAT+AGG - chr2.2:4672212-4672231 MS.gene052061:intron 15.0%
!!! GTTAACTACTTTTTTTTAAA+GGG + chr2.2:4673701-4673720 None:intergenic 15.0%
!!! TATGTATATATATAATTTGC+AGG - chr2.2:4671190-4671209 MS.gene052061:intron 15.0%
!! ATAATCATGTAAGGAAAAAT+TGG + chr2.2:4674037-4674056 None:intergenic 20.0%
!! CAAAAACTCTATAATGTTTA+TGG + chr2.2:4673795-4673814 None:intergenic 20.0%
!! CAAACCCAAATAAAAATATT+TGG + chr2.2:4673283-4673302 None:intergenic 20.0%
!! GATTAAAAAGGACTAAAATA+AGG + chr2.2:4674223-4674242 None:intergenic 20.0%
!! GTGTCCAAATAATATTTATT+TGG + chr2.2:4673156-4673175 None:intergenic 20.0%
!! TAAACAATTGAAACTAAACT+TGG + chr2.2:4674295-4674314 None:intergenic 20.0%
!! TAAATTGAATCATCTATAAC+CGG - chr2.2:4674638-4674657 MS.gene052061:CDS 20.0%
!! TGAAATCTTATGTAGATTTA+TGG - chr2.2:4674084-4674103 MS.gene052061:CDS 20.0%
!! TTGATTGCTTATATATGAAA+CGG + chr2.2:4673666-4673685 None:intergenic 20.0%
!! TTGTAATGATCCAATATATT+AGG - chr2.2:4671932-4671951 MS.gene052061:intron 20.0%
!!! AAAGAGTTTAAATCTTTTCT+AGG - chr2.2:4672426-4672445 MS.gene052061:intron 20.0%
!!! AGTTGTTTTTTCTTTTTCTT+TGG + chr2.2:4673895-4673914 None:intergenic 20.0%
!!! ATGTTTATTATTTGAAGTCA+AGG + chr2.2:4673498-4673517 None:intergenic 20.0%
!!! CTGTTAAGTTGAAAATAATA+AGG + chr2.2:4671413-4671432 None:intergenic 20.0%
!!! CTTATTATTTTCAACTTAAC+AGG - chr2.2:4671411-4671430 MS.gene052061:intron 20.0%
!!! GCTTTTGAAAACATTTTTTT+AGG + chr2.2:4673995-4674014 None:intergenic 20.0%
!!! GTGACCAAATATTTTTATTT+GGG - chr2.2:4673276-4673295 MS.gene052061:CDS 20.0%
!!! TATATATATAATTTGCAGGT+TGG - chr2.2:4671194-4671213 MS.gene052061:intron 20.0%
!!! TGTGACCAAATATTTTTATT+TGG - chr2.2:4673275-4673294 MS.gene052061:CDS 20.0%
!!! TTGAAGAATACTGATTAAAA+AGG + chr2.2:4674235-4674254 None:intergenic 20.0%
!!! TTTAATTTCATGTACAAGTA+TGG + chr2.2:4671382-4671401 None:intergenic 20.0%
!!! TTTTTCCTCTTAAGAATTTT+AGG - chr2.2:4673442-4673461 MS.gene052061:intron 20.0%
!!! TTTTTTTTGTACATAGATCT+CGG + chr2.2:4673954-4673973 None:intergenic 20.0%
!!! TTTTTTTTTGCAGTATATAG+CGG - chr2.2:4674972-4674991 MS.gene052061:intron 20.0%
! AACTAAACTTGGTTAACATT+TGG + chr2.2:4674284-4674303 None:intergenic 25.0%
! AAGTTGAAAATAATAAGGCA+CGG + chr2.2:4671408-4671427 None:intergenic 25.0%
! AATTGAAATGAAAAGCAAGA+AGG + chr2.2:4671875-4671894 None:intergenic 25.0%
! ACCTAAAGAGAATAAAACAA+AGG + chr2.2:4672746-4672765 None:intergenic 25.0%
! ACTTATCTTACAGTGATTAT+GGG + chr2.2:4674181-4674200 None:intergenic 25.0%
! AGAAGGTAAAAGAAATAGTA+AGG + chr2.2:4671858-4671877 None:intergenic 25.0%
! AGTTTCAATTGTTTATTTGC+AGG - chr2.2:4674300-4674319 MS.gene052061:intron 25.0%
! ATTATCTTTCATATGCCAAT+TGG + chr2.2:4674945-4674964 None:intergenic 25.0%
! ATTTAATGATGCAATTCTAC+AGG - chr2.2:4674450-4674469 MS.gene052061:CDS 25.0%
! ATTTCTCATTTAGTCATTCT+TGG + chr2.2:4673338-4673357 None:intergenic 25.0%
! ATTTCTGTTGAACAATAAGA+TGG - chr2.2:4672544-4672563 MS.gene052061:intron 25.0%
! CAAAAGTAGCAAATTAATGA+AGG - chr2.2:4672151-4672170 MS.gene052061:intron 25.0%
! CAATAAAGTCCTTCAAAAAA+TGG - chr2.2:4671243-4671262 MS.gene052061:intron 25.0%
! CATAAAAATACCGAATTGTT+AGG - chr2.2:4672243-4672262 MS.gene052061:intron 25.0%
! CATAGTAGTGAAAATATGTT+AGG + chr2.2:4674522-4674541 None:intergenic 25.0%
! CCAAATTATTTGGACAATAA+TGG - chr2.2:4671750-4671769 MS.gene052061:CDS 25.0%
! CCATTATTGTCCAAATAATT+TGG + chr2.2:4671753-4671772 None:intergenic 25.0%
! GAAGGGATTAAAAAAATGTT+TGG - chr2.2:4672779-4672798 MS.gene052061:intron 25.0%
! GCTTACAATTTAAACTACAT+TGG - chr2.2:4675165-4675184 MS.gene052061:CDS 25.0%
! GGTGTTCTTGATAAAATTAA+CGG + chr2.2:4674924-4674943 None:intergenic 25.0%
! GTTTAATTAATCTTGTCACA+TGG - chr2.2:4672085-4672104 MS.gene052061:intron 25.0%
! TAACTTTGTCAAAGAAAATG+AGG - chr2.2:4671016-4671035 MS.gene052061:CDS 25.0%
! TACTTATCTTACAGTGATTA+TGG + chr2.2:4674182-4674201 None:intergenic 25.0%
! TCTAACCGTATATAAATAGT+CGG + chr2.2:4674677-4674696 None:intergenic 25.0%
! TGATTGCTTATATATGAAAC+GGG + chr2.2:4673665-4673684 None:intergenic 25.0%
! TGTAATAGAAAGAAGAAAGA+AGG + chr2.2:4673625-4673644 None:intergenic 25.0%
! TTCAAAACGTTCATTATATG+AGG - chr2.2:4675218-4675237 MS.gene052061:CDS 25.0%
!! ATTTTATCAAGAACACCAAT+TGG - chr2.2:4674927-4674946 MS.gene052061:intron 25.0%
!! GGAAAATTGTACATTTTACA+AGG + chr2.2:4673931-4673950 None:intergenic 25.0%
!! GTTAAAGAAATCCATTGATT+TGG - chr2.2:4671220-4671239 MS.gene052061:intron 25.0%
!! TTTTCACAATAAGATAGTGA+GGG + chr2.2:4674844-4674863 None:intergenic 25.0%
!!! AAGAACATGAGAAAGTATTA+TGG - chr2.2:4670939-4670958 MS.gene052061:CDS 25.0%
!!! AGAACATGAGAAAGTATTAT+GGG - chr2.2:4670940-4670959 MS.gene052061:CDS 25.0%
!!! TCCTTTGTTTTATTCTCTTT+AGG - chr2.2:4672742-4672761 MS.gene052061:intron 25.0%
!!! TTTGTTTTATTCTCTTTAGG+TGG - chr2.2:4672745-4672764 MS.gene052061:intron 25.0%
!!! TTTTTTTGTACATAGATCTC+GGG + chr2.2:4673953-4673972 None:intergenic 25.0%
AAAGTCCTTCAAAAAATGGA+TGG - chr2.2:4671247-4671266 MS.gene052061:intron 30.0%
AATGGCATTAAGATCATTGA+AGG - chr2.2:4671768-4671787 MS.gene052061:CDS 30.0%
AATTCCATGATGAGATTATG+AGG + chr2.2:4671501-4671520 None:intergenic 30.0%
ACCATCCTAAAATTCTTAAG+AGG + chr2.2:4673450-4673469 None:intergenic 30.0%
AGCAACTCCTACATAAAAAA+TGG - chr2.2:4671808-4671827 MS.gene052061:CDS 30.0%
AGGAATGATAGCATTAACTA+TGG - chr2.2:4673849-4673868 MS.gene052061:intron 30.0%
ATCATGACAGAAGAAATCTT+TGG - chr2.2:4674145-4674164 MS.gene052061:CDS 30.0%
ATCATTAAATACAATGCTCC+CGG + chr2.2:4674440-4674459 None:intergenic 30.0%
ATGTACCTTCTATTGTAGAA+AGG - chr2.2:4672109-4672128 MS.gene052061:intron 30.0%
CAAATAATTTGGTAGAACAG+TGG + chr2.2:4671742-4671761 None:intergenic 30.0%
CAAGGTGAAAACATGAAATA+TGG + chr2.2:4673480-4673499 None:intergenic 30.0%
CACTGTTCTACCAAATTATT+TGG - chr2.2:4671740-4671759 MS.gene052061:CDS 30.0%
GCAACTCCTACATAAAAAAT+GGG - chr2.2:4671809-4671828 MS.gene052061:CDS 30.0%
TAGGTAGACCAAAATGATAA+TGG + chr2.2:4672330-4672349 None:intergenic 30.0%
TATGGAACCAACAATATTAC+TGG - chr2.2:4674102-4674121 MS.gene052061:CDS 30.0%
TGAACCTAATGTCAAAGAAT+CGG - chr2.2:4672880-4672899 MS.gene052061:intron 30.0%
TGATTCACTTTCAACTTCTT+GGG - chr2.2:4672048-4672067 MS.gene052061:intron 30.0%
TGTAGCCGACTATTTATATA+CGG - chr2.2:4674669-4674688 MS.gene052061:CDS 30.0%
TTCAATTGTTTATTTGCAGG+TGG - chr2.2:4674303-4674322 MS.gene052061:intron 30.0%
TTGATTCACTTTCAACTTCT+TGG - chr2.2:4672047-4672066 MS.gene052061:intron 30.0%
! CTTTTCACAATAAGATAGTG+AGG + chr2.2:4674845-4674864 None:intergenic 30.0%
! TCATCATGGAATTTTCCATT+TGG - chr2.2:4671508-4671527 MS.gene052061:intron 30.0%
! TCCATTTGGTGAGTAAAATA+TGG - chr2.2:4671522-4671541 MS.gene052061:intron 30.0%
!! ACCAAAATGATAATGGTCAT+CGG + chr2.2:4672323-4672342 None:intergenic 30.0%
!! ACTTGAAAGTAGTGCTATTT+GGG + chr2.2:4671446-4671465 None:intergenic 30.0%
!! AGGAAAAATTGGTCTCTTTT+AGG + chr2.2:4674026-4674045 None:intergenic 30.0%
!! AGTATTCTTCAAAAGTGTCA+AGG - chr2.2:4674243-4674262 MS.gene052061:intron 30.0%
!! GAAAAACAAAAGAAGCATCA+TGG - chr2.2:4670967-4670986 MS.gene052061:CDS 30.0%
!! TCCTCTTAAGAATTTTAGGA+TGG - chr2.2:4673446-4673465 MS.gene052061:intron 30.0%
!! TTTCTCTTGGTTTTTGTAAC+AGG - chr2.2:4671621-4671640 MS.gene052061:intron 30.0%
!!! GAAGTTACTACACTGATTTT+TGG - chr2.2:4675094-4675113 MS.gene052061:CDS 30.0%
!!! GGAATACTTCTTGTTTTACT+CGG - chr2.2:4675186-4675205 MS.gene052061:CDS 30.0%
!!! TCGACGAAGTTTTAAATTCA+CGG - chr2.2:4672977-4672996 MS.gene052061:intron 30.0%
!!! TCTTGTCCCATTTTTTATGT+AGG + chr2.2:4671818-4671837 None:intergenic 30.0%
!!! TTTTTTGTACATAGATCTCG+GGG + chr2.2:4673952-4673971 None:intergenic 30.0%
AAATGAGGAAGAGATCTTGA+AGG - chr2.2:4671031-4671050 MS.gene052061:CDS 35.0%
CATTGCCTTTCTACAATAGA+AGG + chr2.2:4672117-4672136 None:intergenic 35.0%
CTAGAAGAGAAGAAGAAGTA+GGG + chr2.2:4671719-4671738 None:intergenic 35.0%
CTCCTAACATATAGTCATTG+TGG + chr2.2:4672384-4672403 None:intergenic 35.0%
CTTGCAAAACAAAACCTTAC+TGG + chr2.2:4674548-4674567 None:intergenic 35.0%
GCATAAATTGCTAGAGGTTT+AGG + chr2.2:4674367-4674386 None:intergenic 35.0%
GGACTTTATTGCCAAATCAA+TGG + chr2.2:4671234-4671253 None:intergenic 35.0%
GGAGAGAATCACAACTAAAA+GGG - chr2.2:4670988-4671007 MS.gene052061:CDS 35.0%
GTCCACAATGACTATATGTT+AGG - chr2.2:4672379-4672398 MS.gene052061:intron 35.0%
GTTCAAAGTTGTGTTTCTCT+TGG - chr2.2:4671608-4671627 MS.gene052061:intron 35.0%
TAGAAGAGAAGAAGAAGTAG+GGG + chr2.2:4671718-4671737 None:intergenic 35.0%
TAGGACATTCGCAAAATGAT+CGG - chr2.2:4672445-4672464 MS.gene052061:intron 35.0%
TAGTCCTCATAATCTCATCA+TGG - chr2.2:4671494-4671513 MS.gene052061:intron 35.0%
TCACTACTATGAAACCAGTA+AGG - chr2.2:4674531-4674550 MS.gene052061:intron 35.0%
TCGTGCACTTCCTAATATAT+TGG + chr2.2:4671945-4671964 None:intergenic 35.0%
TCTATTGTAGAAAGGCAATG+TGG - chr2.2:4672117-4672136 MS.gene052061:intron 35.0%
TCTTTAGGTGGAGTTAATGA+AGG - chr2.2:4672757-4672776 MS.gene052061:intron 35.0%
TGGAGAGAATCACAACTAAA+AGG - chr2.2:4670987-4671006 MS.gene052061:CDS 35.0%
TGTAAGCTTCTTCAAGTAGT+TGG + chr2.2:4675152-4675171 None:intergenic 35.0%
TGTTTATGGAACAAGTTCTC+AGG + chr2.2:4673781-4673800 None:intergenic 35.0%
TTAACCGGAAAAGTCTTTCA+TGG - chr2.2:4673122-4673141 MS.gene052061:intron 35.0%
TTCTTGGATAAGTCAATTCG+AGG + chr2.2:4673322-4673341 None:intergenic 35.0%
! AACTGAAGCTCTTTTCTACA+AGG + chr2.2:4672640-4672659 None:intergenic 35.0%
! ATGAGTTGGGATTCAATCAA+CGG + chr2.2:4672282-4672301 None:intergenic 35.0%
! CAATGCTGTTGGATTCTTTT+GGG + chr2.2:4672811-4672830 None:intergenic 35.0%
! CACTTGAAAGTAGTGCTATT+TGG + chr2.2:4671447-4671466 None:intergenic 35.0%
! GCCATATTTTACTCACCAAA+TGG + chr2.2:4671526-4671545 None:intergenic 35.0%
! GTGAAAGCATAAATTGCTAG+AGG + chr2.2:4674373-4674392 None:intergenic 35.0%
! TCCGATGACCATTATCATTT+TGG - chr2.2:4672319-4672338 MS.gene052061:intron 35.0%
! TGGGACAAGATATTTTTCAC+TGG - chr2.2:4671828-4671847 MS.gene052061:intron 35.0%
! TTGGTATCTGAAACATCATC+CGG - chr2.2:4674418-4674437 MS.gene052061:CDS 35.0%
!! AACTTGTTAAGATTCCATGG+AGG + chr2.2:4675129-4675148 None:intergenic 35.0%
!! AATTTTGGTGGCAAAGTATG+GGG - chr2.2:4672577-4672596 MS.gene052061:intron 35.0%
!! ATGAGAAAGTATTATGGGAG+TGG - chr2.2:4670945-4670964 MS.gene052061:CDS 35.0%
!! CTTGAAAGTAGTGCTATTTG+GGG + chr2.2:4671445-4671464 None:intergenic 35.0%
!! GAATTTTGGTGGCAAAGTAT+GGG - chr2.2:4672576-4672595 MS.gene052061:intron 35.0%
!! TCATGATTGCTGATTCAAGT+GGG + chr2.2:4674132-4674151 None:intergenic 35.0%
!! TGGAACTTGTTAAGATTCCA+TGG + chr2.2:4675132-4675151 None:intergenic 35.0%
!!! ACTACACTGATTTTTGGTTC+AGG - chr2.2:4675100-4675119 MS.gene052061:CDS 35.0%
!!! TGGTCTCTTTTAGGTTCATT+TGG + chr2.2:4674017-4674036 None:intergenic 35.0%
!!! TTTCCTGCTTTTTACCAATG+TGG + chr2.2:4672663-4672682 None:intergenic 35.0%
AAAATGGATGGCTGGTAAAG+AGG - chr2.2:4671259-4671278 MS.gene052061:intron 40.0%
AAAGAGCTTCAGTTCCACAT+TGG - chr2.2:4672646-4672665 MS.gene052061:intron 40.0%
AACAATCCTTGCAATGCTGT+TGG + chr2.2:4672822-4672841 None:intergenic 40.0%
AAGAATCCAACAGCATTGCA+AGG - chr2.2:4672813-4672832 MS.gene052061:intron 40.0%
AAGTCAATTCGAGGCACAAT+TGG + chr2.2:4673313-4673332 None:intergenic 40.0%
ACCTAATGTCAAAGAATCGG+TGG - chr2.2:4672883-4672902 MS.gene052061:intron 40.0%
AGCTTGAGAGAGAAGTTAAG+TGG + chr2.2:4674582-4674601 None:intergenic 40.0%
AGGTGGAGTTAATGAAGGAA+GGG - chr2.2:4672762-4672781 MS.gene052061:intron 40.0%
AGTCCTAAAACCTTCAGAGT+TGG - chr2.2:4671692-4671711 MS.gene052061:CDS 40.0%
AGTCGGCTACATCATAAAAC+CGG + chr2.2:4674660-4674679 None:intergenic 40.0%
ATTATGAGGACTAGACCAAG+AGG + chr2.2:4671487-4671506 None:intergenic 40.0%
ATTCACCAACTCCTCCAAAT+GGG + chr2.2:4675005-4675024 None:intergenic 40.0%
ATTCAGTCACCATAAAGCTG+TGG - chr2.2:4675065-4675084 MS.gene052061:CDS 40.0%
ATTGAAGGTGGACCAGAAAT+TGG - chr2.2:4671783-4671802 MS.gene052061:CDS 40.0%
CAAAACACTGCAGAGAAGAT+TGG - chr2.2:4674399-4674418 MS.gene052061:CDS 40.0%
CACAGACTAGTGAATGAGTT+GGG + chr2.2:4672295-4672314 None:intergenic 40.0%
CTTCCCTAAATCCTTCTTGA+GGG + chr2.2:4671057-4671076 None:intergenic 40.0%
CTTTGACATTAGGTTCACTG+AGG + chr2.2:4672877-4672896 None:intergenic 40.0%
GAAGGCGAGCTATAGAAATA+AGG + chr2.2:4673607-4673626 None:intergenic 40.0%
GAGGAGACTCTTGATTCTAT+TGG + chr2.2:4672858-4672877 None:intergenic 40.0%
GCATCGTAAGTCGATTGTAT+AGG - chr2.2:4674742-4674761 MS.gene052061:intron 40.0%
GCTAGAAGAGAAGAAGAAGT+AGG + chr2.2:4671720-4671739 None:intergenic 40.0%
GGCATTAAGATCATTGAAGG+TGG - chr2.2:4671771-4671790 MS.gene052061:CDS 40.0%
GTGGATTTGGCAAGTATCAT+GGG - chr2.2:4675025-4675044 MS.gene052061:intron 40.0%
GTTCCACATTGGTAAAAAGC+AGG - chr2.2:4672657-4672676 MS.gene052061:intron 40.0%
TACAGTGATTATGGGAAGCA+CGG + chr2.2:4674173-4674192 None:intergenic 40.0%
TAGGTGGAGTTAATGAAGGA+AGG - chr2.2:4672761-4672780 MS.gene052061:intron 40.0%
TATGGAACAAGTTCTCAGGA+GGG + chr2.2:4673777-4673796 None:intergenic 40.0%
TCACAGACTAGTGAATGAGT+TGG + chr2.2:4672296-4672315 None:intergenic 40.0%
TCCTTCAAAAAATGGATGGC+TGG - chr2.2:4671251-4671270 MS.gene052061:intron 40.0%
TGGGATTCAATCAACGGTTA+CGG + chr2.2:4672276-4672295 None:intergenic 40.0%
TGTAGAAAGGCAATGTGGAA+TGG - chr2.2:4672122-4672141 MS.gene052061:intron 40.0%
TGTGGATTTGGCAAGTATCA+TGG - chr2.2:4675024-4675043 MS.gene052061:intron 40.0%
TTATGGAACAAGTTCTCAGG+AGG + chr2.2:4673778-4673797 None:intergenic 40.0%
! ATATTAGGAAGTGCACGAGT+GGG - chr2.2:4671947-4671966 MS.gene052061:intron 40.0%
! GATGGCTGTGAAACGAATTT+TGG - chr2.2:4672562-4672581 MS.gene052061:intron 40.0%
! GCAATGCTGTTGGATTCTTT+TGG + chr2.2:4672812-4672831 None:intergenic 40.0%
! GTCAAAGAATCGGTGGTTTT+TGG - chr2.2:4672890-4672909 MS.gene052061:intron 40.0%
! GTGTCCATGAAAGACTTTTC+CGG + chr2.2:4673129-4673148 None:intergenic 40.0%
! TATATTAGGAAGTGCACGAG+TGG - chr2.2:4671946-4671965 MS.gene052061:intron 40.0%
! TGGTATCTGAAACATCATCC+GGG - chr2.2:4674419-4674438 MS.gene052061:CDS 40.0%
!! AAAGAATCGGTGGTTTTTGG+TGG - chr2.2:4672893-4672912 MS.gene052061:intron 40.0%
!! ACCACCGATTCTTTGACATT+AGG + chr2.2:4672887-4672906 None:intergenic 40.0%
!! ACTCCTATAACTCTGGAGTT+AGG - chr2.2:4672004-4672023 MS.gene052061:CDS 40.0%
!! ATGATTGCTGATTCAAGTGG+GGG + chr2.2:4674130-4674149 None:intergenic 40.0%
!! CATGATTGCTGATTCAAGTG+GGG + chr2.2:4674131-4674150 None:intergenic 40.0%
!! CGAATTTTGGTGGCAAAGTA+TGG - chr2.2:4672575-4672594 MS.gene052061:intron 40.0%
!! CTCCTATAACTCTGGAGTTA+GGG - chr2.2:4672005-4672024 MS.gene052061:CDS 40.0%
!! GTCATGATTGCTGATTCAAG+TGG + chr2.2:4674133-4674152 None:intergenic 40.0%
!! TCCTATAACTCTGGAGTTAG+GGG - chr2.2:4672006-4672025 MS.gene052061:CDS 40.0%
!! TGTTGAGGCTTTTAGAGATG+AGG - chr2.2:4671082-4671101 MS.gene052061:CDS 40.0%
!! TTTAGGGAAGCATCATGTTG+AGG - chr2.2:4671067-4671086 MS.gene052061:CDS 40.0%
!!! ACCAGCCATCCATTTTTTGA+AGG + chr2.2:4671255-4671274 None:intergenic 40.0%
!!! TTTTGTAACAGGAGTGTCCT+TGG - chr2.2:4671632-4671651 MS.gene052061:intron 40.0%
AAGGCCCTCAAGAAGGATTT+AGG - chr2.2:4671050-4671069 MS.gene052061:CDS 45.0%
AGGAGTTGCTCTCCAATTTC+TGG + chr2.2:4671798-4671817 None:intergenic 45.0%
AGGCCCTCAAGAAGGATTTA+GGG - chr2.2:4671051-4671070 MS.gene052061:CDS 45.0%
CAATTCGAGGCACAATTGGT+TGG + chr2.2:4673309-4673328 None:intergenic 45.0%
CAGGTGGAGAAGATTGAAGA+CGG - chr2.2:4674319-4674338 MS.gene052061:CDS 45.0%
CATTCACCAACTCCTCCAAA+TGG + chr2.2:4675006-4675025 None:intergenic 45.0%
CGGTGTGCAACCTAACAATT+CGG + chr2.2:4672256-4672275 None:intergenic 45.0%
GAAAGTGAATCAACCAGTGC+TGG + chr2.2:4672040-4672059 None:intergenic 45.0%
GAAATTGTTGCTGAGCCTCT+TGG - chr2.2:4671469-4671488 MS.gene052061:intron 45.0%
GATTGTTATGTCTGCAGCAG+TGG - chr2.2:4671973-4671992 MS.gene052061:CDS 45.0%
GCAGCTATGGCTCCAATTAA+TGG + chr2.2:4671660-4671679 None:intergenic 45.0%
GCATCTCACTCCTATAACTC+TGG - chr2.2:4671997-4672016 MS.gene052061:CDS 45.0%
GCTTCCCTAAATCCTTCTTG+AGG + chr2.2:4671058-4671077 None:intergenic 45.0%
GGGGGATCCAGTAATATTGT+TGG + chr2.2:4674112-4674131 None:intergenic 45.0%
GTGTCCTTGGAGCCATTAAT+TGG - chr2.2:4671645-4671664 MS.gene052061:intron 45.0%
TGCAACATTTCCAGCAGCTA+TGG + chr2.2:4671673-4671692 None:intergenic 45.0%
TTAATTGGAGCCATAGCTGC+TGG - chr2.2:4671660-4671679 MS.gene052061:intron 45.0%
TTCAACTTCTTGGGACAGAG+AGG - chr2.2:4672057-4672076 MS.gene052061:intron 45.0%
TTCTCCTAGCCACAGCTTTA+TGG + chr2.2:4675077-4675096 None:intergenic 45.0%
! ACAGTGATTATGGGAAGCAC+GGG + chr2.2:4674172-4674191 None:intergenic 45.0%
! AGTTCTCAGGAGGGATGTTT+TGG + chr2.2:4673768-4673787 None:intergenic 45.0%
! GGCTGTGAAACGAATTTTGG+TGG - chr2.2:4672565-4672584 MS.gene052061:intron 45.0%
! TATTAGGAAGTGCACGAGTG+GGG - chr2.2:4671948-4671967 MS.gene052061:intron 45.0%
! TTTGGTTCAGGTTTCCTCCA+TGG - chr2.2:4675112-4675131 MS.gene052061:CDS 45.0%
!! ATAGCGGATACCATCCCATT+TGG - chr2.2:4674988-4675007 MS.gene052061:intron 45.0%
!! CCTATAACTCTGGAGTTAGG+GGG - chr2.2:4672007-4672026 MS.gene052061:CDS 45.0%
!! GGAGTTGGTGAATGTGGATT+TGG - chr2.2:4675012-4675031 MS.gene052061:intron 45.0%
!! TTTGGAGGAGTTGGTGAATG+TGG - chr2.2:4675006-4675025 MS.gene052061:intron 45.0%
!! TAAAATTTAAATTTATTCAA+AGG - chr2.2:4673820-4673839 MS.gene052061:intron 5.0%
!! TTAAAAAAATAAATAAAATC+GGG + chr2.2:4672506-4672525 None:intergenic 5.0%
!!! ATATTAATAAAACTTTTTTT+AGG + chr2.2:4672349-4672368 None:intergenic 5.0%
ACCAACTCCTCCAAATGGGA+TGG + chr2.2:4675001-4675020 None:intergenic 50.0%
ACCATCCCATTTGGAGGAGT+TGG - chr2.2:4674997-4675016 MS.gene052061:intron 50.0%
CCCCCTAACTCCAGAGTTAT+AGG + chr2.2:4672010-4672029 None:intergenic 50.0%
GATCTTGAAGGCCCTCAAGA+AGG - chr2.2:4671043-4671062 MS.gene052061:CDS 50.0%
GGAGTTCTCAGTGGAAGCTT+TGG - chr2.2:4670905-4670924 MS.gene052061:CDS 50.0%
GGCTCCAATTAATGGCTCCA+AGG + chr2.2:4671652-4671671 None:intergenic 50.0%
GTCACCATAAAGCTGTGGCT+AGG - chr2.2:4675070-4675089 MS.gene052061:CDS 50.0%
!! GGGCCAACTCTGAAGGTTTT+AGG + chr2.2:4671698-4671717 None:intergenic 50.0%
AGGGGGAAAATGTCCAGCAC+TGG - chr2.2:4672024-4672043 MS.gene052061:CDS 55.0%
GAAGTAGGGGCCAACTCTGA+AGG + chr2.2:4671705-4671724 None:intergenic 55.0%
GCAAAGTATGGGGCTTGTGC+AGG - chr2.2:4672587-4672606 MS.gene052061:intron 55.0%
GCGGATACCATCCCATTTGG+AGG - chr2.2:4674991-4675010 MS.gene052061:intron 55.0%
! TAGGAAGTGCACGAGTGGGG+AGG - chr2.2:4671951-4671970 MS.gene052061:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 4670903 4675251 4670903 ID=MS.gene052061
chr2.2 mRNA 4670903 4675251 4670903 ID=MS.gene052061.t1;Parent=MS.gene052061
chr2.2 exon 4675051 4675251 4675051 ID=MS.gene052061.t1.exon1;Parent=MS.gene052061.t1
chr2.2 CDS 4675051 4675251 4675051 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4674874 4674942 4674874 ID=MS.gene052061.t1.exon2;Parent=MS.gene052061.t1
chr2.2 CDS 4674874 4674942 4674874 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4674625 4674721 4674625 ID=MS.gene052061.t1.exon3;Parent=MS.gene052061.t1
chr2.2 CDS 4674625 4674721 4674625 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4674305 4674511 4674305 ID=MS.gene052061.t1.exon4;Parent=MS.gene052061.t1
chr2.2 CDS 4674305 4674511 4674305 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4674076 4674200 4674076 ID=MS.gene052061.t1.exon5;Parent=MS.gene052061.t1
chr2.2 CDS 4674076 4674200 4674076 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4673487 4673591 4673487 ID=MS.gene052061.t1.exon6;Parent=MS.gene052061.t1
chr2.2 CDS 4673487 4673591 4673487 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4673218 4673390 4673218 ID=MS.gene052061.t1.exon7;Parent=MS.gene052061.t1
chr2.2 CDS 4673218 4673390 4673218 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4671965 4672055 4671965 ID=MS.gene052061.t1.exon8;Parent=MS.gene052061.t1
chr2.2 CDS 4671965 4672055 4671965 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4671683 4671832 4671683 ID=MS.gene052061.t1.exon9;Parent=MS.gene052061.t1
chr2.2 CDS 4671683 4671832 4671683 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
chr2.2 exon 4670903 4671169 4670903 ID=MS.gene052061.t1.exon10;Parent=MS.gene052061.t1
chr2.2 CDS 4670903 4671169 4670903 ID=cds.MS.gene052061.t1;Parent=MS.gene052061.t1
Gene Sequence

>MS.gene052061

ATGGAGTTCTCAGTGGAAGCTTTGGAGAGAGATATAAAGAACATGAGAAAGTATTATGGGAGTGGAAAAACAAAAGAAGCATCATGGAGAGAATCACAACTAAAAGGGTTGCGTAACTTTGTCAAAGAAAATGAGGAAGAGATCTTGAAGGCCCTCAAGAAGGATTTAGGGAAGCATCATGTTGAGGCTTTTAGAGATGAGGTGTGTTTCTTATTCTACTTGCTACTCTTATAATAGTAATATGTATATGTATATTTCTGTTTAATTTGGTTTGCTTAATTAATCCATATGTATATATATAATTTGCAGGTTGGAACGTTAAAGAAATCCATTGATTTGGCAATAAAGTCCTTCAAAAAATGGATGGCTGGTAAAGAGGTTAGTTTATATATGTACAACACATGCAAAACAAATGAGAAAAGTATATATTTTTTATTTCCATTATATTTAGTTTATTGAAAAGAAGAACAGTTGCACCATACTTGTACATGAAATTAAAGAACCGTGCCTTATTATTTTCAACTTAACAGGCTAAACTGCCCCAAATAGCACTACTTTCAAGTGCAGAAATTGTTGCTGAGCCTCTTGGTCTAGTCCTCATAATCTCATCATGGAATTTTCCATTTGGTGAGTAAAATATGGCTGCAGACATAAAATAAACTTTTAGTATATACAAATTAAATCTATAAAAAAAAAAAAAATTAAGTTCAAAGTTGTGTTTCTCTTGGTTTTTGTAACAGGAGTGTCCTTGGAGCCATTAATTGGAGCCATAGCTGCTGGAAATGTTGCAGTCCTAAAACCTTCAGAGTTGGCCCCTACTTCTTCTTCTCTTCTAGCCACTGTTCTACCAAATTATTTGGACAATAATGGCATTAAGATCATTGAAGGTGGACCAGAAATTGGAGAGCAACTCCTACATAAAAAATGGGACAAGATATTTTTCACTGGTCAACCTTACTATTTCTTTTACCTTCTTGCTTTTCATTTCAATTTTCTTAACTTTTGATAAAAAAAATTAATTAATTAAACTTGTAATGATCCAATATATTAGGAAGTGCACGAGTGGGGAGGATTGTTATGTCTGCAGCAGTGGAGCATCTCACTCCTATAACTCTGGAGTTAGGGGGAAAATGTCCAGCACTGGTTGATTCACTTTCAACTTCTTGGGACAGAGAGGTACATGTTTAATTAATCTTGTCACATGGAATGTACCTTCTATTGTAGAAAGGCAATGTGGAATGGACAAAACAAAAGTAGCAAATTAATGAAGGACAAGAAAAAAAAAAAAAAAAAAGAGTTATTTTTCGTTCCATTAAGTTTTATTAATATAGGACACAAGTCATAAAAATACCGAATTGTTAGGTTGCACACCGTAACCGTTGATTGAATCCCAACTCATTCACTAGTCTGTGAATTTCCGATGACCATTATCATTTTGGTCTACCTAAAAAAAGTTTTATTAATATAAACTAAGGAGTCCACAATGACTATATGTTAGGAGTTTGAACTTATAATCTCAAATGAAAGAGTTTAAATCTTTTCTAGGACATTCGCAAAATGATCGGTGATAACACTTTAACTAATAACAATTTTTTTCTTCCCCGATTTTATTTATTTTTTTAAACTGCTTACAAGATTTTTATTTCTGTTGAACAATAAGATGGCTGTGAAACGAATTTTGGTGGCAAAGTATGGGGCTTGTGCAGGACAAGCATGCATAGCAATTGATTATGTCCTTGTAGAAAAGAGCTTCAGTTCCACATTGGTAAAAAGCAGGAAATAATTTTTTTAAAAGTTTTTTATTATGCTGCAATTACACTATTAATCTTGAAGCATTACTCCTTTGTTTTATTCTCTTTAGGTGGAGTTAATGAAGGAAGGGATTAAAAAAATGTTTGGAGACAACCCAAAAGAATCCAACAGCATTGCAAGGATTGTTAATAAACAACATTCCAATAGAATCAAGAGTCTCCTCAGTGAACCTAATGTCAAAGAATCGGTGGTTTTTGGTGGTTCTATGCACGATGATGACTTGTATGCAATTAATACTCTCTTTTCTTAGTTGCTTGAATGTTCGACGAAGTTTTAAATTCACGGATCATCATTTAATCTCTAAAAATTAGAATTGATTTTTAAAATTAACTGAATTTTAAAAAATATCATTGAATTTATAAAACTTTATTCTCATTAGATTCTATCACACAATTTAAATGATTGAATTAACCGGAAAAGTCTTTCATGGACACATTCCCAAATAAATATTATTTGGACACACTCACATGAAATTAATAAAACTAAATAAAAAGTATTTAATCATATCAATTGATATCTTGTAATTTTATTTTCCTTTAATTTTTTCTTGATTTTGTGTGTGTGACCAAATATTTTTATTTGGGTTTGTGTCCAACCAATTGTGCCTCGAATTGACTTATCCAAGAATGACTAAATGAGAAATTTTAAATATTAAGAATTTTTTCTTCAAAAAATATTAAGAATTTTAATAACTAAATTCACTTGTTTTACATTATAGAACAAGATTTTTTTCCTCTTAAGAATTTTAGGATGGTTTAGTTTCCATATTTCATGTTTTCACCTTGACTTCAAATAATAAACATAAAATGATATAGATTTGATATTTTTCTAAATATTTTCTTGAATAATATTTGAAAATGTGAAAACATTTTCCTTGTTTTTTTTAATACCTTATTTCTATAGCTCGCCTTCTTTCTTCTTTCTATTACAATTGTTCATTATTCTCTCCCGTTTCATATATAAGCAATCAAAACTAACTTACACCCTTTAAAAAAAAGTAGTTAACTTTATTTAATTTTCTCAAAGTAACAGAAAAAATAATTGTATTCTCCAAAACATCCCTCCTGAGAACTTGTTCCATAAACATTATAGAGTTTTTGAAAAGTAAAATTTAAATTTATTCAAAGGTATTTTAGGAATGATAGCATTAACTATGGTAAAGTAAGAGAACATGCATCCAAAGAAAAAGAAAAAACAACTTAAAACTCGAAATCCTTGTAAAATGTACAATTTTCCCCGAGATCTATGTACAAAAAAAAAATTGAGAAATATAAAAACCTAAAAAAATGTTTTCAAAAGCCAAATGAACCTAAAAGAGACCAATTTTTCCTTACATGATTATATTTATGATCAAAAGTATTTTTTGCACTGAAATCTTATGTAGATTTATGGAACCAACAATATTACTGGATCCCCCACTTGAATCAGCAATCATGACAGAAGAAATCTTTGGTCCCGTGCTTCCCATAATCACTGTAAGATAAGTACAATATTTTTTTTTTCTTCCTTATTTTAGTCCTTTTTAATCAGTATTCTTCAAAAGTGTCAAGGCAAGTGATTCATTAGCCAAATGTTAACCAAGTTTAGTTTCAATTGTTTATTTGCAGGTGGAGAAGATTGAAGACGGTATTGAGTTCATAAACTCAAAGCCTAAACCTCTAGCAATTTATGCTTTCACAAAGAACAAAACACTGCAGAGAAGATTGGTATCTGAAACATCATCCGGGAGCATTGTATTTAATGATGCAATTCTACAGGTATTTATTTGCTGATAGTGACTTACATTATCTTCATTAATTAAAAACCTAACATATTTTCACTACTATGAAACCAGTAAGGTTTTGTTTTGCAAGCTGCTAAACTTCCACTTAACTTCTCTCTCAAGCTTACAACATTTTTTCACGAGCTTATAACATTTTTTTCTAAATTGAATCATCTATAACCGGTTTTATGATGTAGCCGACTATTTATATACGGTTAGATTAAGAAAGATGATTTTTCTTTCTTTTAACGGTCTTCAATCGACTGCATCGTAAGTCGATTGTATAGGATCCAAGTTTTTTTTAAGACTATTTAAGTAGTATTTGAACTTATAATTTATATTGTATTGTTTTTTCTCATTTTTACCCTCACTATCTTATTGTGAAAAGTAAATATTAACTAAAAATATATTTTTTCGTCATTAAATATTTATCACTTGTTTCAACCGTTAATTTTATCAAGAACACCAATTGGCATATGAAAGATAATTTTTTTTTTTTTTTTTGCAGTATATAGCGGATACCATCCCATTTGGAGGAGTTGGTGAATGTGGATTTGGCAAGTATCATGGGAAGTTCTCATTTGATGCATTCAGTCACCATAAAGCTGTGGCTAGGAGAAGTTACTACACTGATTTTTGGTTCAGGTTTCCTCCATGGAATCTTAACAAGTTCCAACTACTTGAAGAAGCTTACAATTTAAACTACATTGGAATACTTCTTGTTTTACTCGGCTTGAAGAGTTCAAAACGTTCATTATATGAGGCTTGTAAATGA
Protein sequence

>MS.gene052061.t1

MEFSVEALERDIKNMRKYYGSGKTKEASWRESQLKGLRNFVKENEEEILKALKKDLGKHHVEAFRDEVGTLKKSIDLAIKSFKKWMAGKEAKLPQIALLSSAEIVAEPLGLVLIISSWNFPFGVSLEPLIGAIAAGNVAVLKPSELAPTSSSLLATVLPNYLDNNGIKIIEGGPEIGEQLLHKKWDKIFFTGSARVGRIVMSAAVEHLTPITLELGGKCPALVDSLSTSWDREMAVKRILVAKYGACAGQACIAIDYVLVEKSFSSTLVELMKEGIKKMFGDNPKESNSIARIVNKQHSNRIKSLLSEPNVKESVVFGGSMHDDDLFMEPTILLDPPLESAIMTEEIFGPVLPIITVEKIEDGIEFINSKPKPLAIYAFTKNKTLQRRLVSETSSGSIVFNDAILQYIADTIPFGGVGECGFGKYHGKFSFDAFSHHKAVARRSYYTDFWFRFPPWNLNKFQLLEEAYNLNYIGILLVLLGLKSSKRSLYEACK