AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31119

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31119.t1 MTR_5g032760 90.400 125 9 1 1 122 40 164 1.18e-45 145
MS.gene31119.t1 MTR_2g097650 100.000 67 0 0 56 122 3 69 4.35e-41 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 24 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGGTGGACTAGTGCTTT+TGG 0.225862 2.4:+6207994 MS.gene31119:CDS
AGCATCGCGGGTTATAGTTT+GGG 0.348033 2.4:-6206781 None:intergenic
GAGCATCGCGGGTTATAGTT+TGG 0.349832 2.4:-6206782 None:intergenic
CCGCGATGCTCGCACAATTA+CGG 0.385032 2.4:+6206794 MS.gene31119:CDS
GGTAATGGAGGAGGCGGTGG+TGG 0.419598 2.4:+6207965 MS.gene31119:CDS
TCGTCGCGAGGTGGCAATCC+AGG 0.433703 2.4:-6207929 None:intergenic
AGACTTGATGACAATGGGCC+TGG 0.438601 2.4:+6207911 MS.gene31119:CDS
CGTAATTGTGCGAGCATCGC+GGG 0.445247 2.4:-6206793 None:intergenic
GGTGGTAATGGAGGAGGCGG+TGG 0.465666 2.4:+6207962 MS.gene31119:CDS
ATTAAAATGTGACGCTGCTA+TGG 0.476209 2.4:+6205627 MS.gene31119:CDS
GATGATGGCAATGGTGGTAA+TGG 0.487379 2.4:+6207950 MS.gene31119:CDS
AGATTAGACTTGATGACAAT+GGG 0.494836 2.4:+6207906 MS.gene31119:CDS
TTGCCACCTCGCGACGATGA+TGG 0.502965 2.4:+6207935 MS.gene31119:CDS
CAATGTCTTTAAGAATGTCT+AGG 0.523559 2.4:-6208030 None:intergenic
AAGATTAGACTTGATGACAA+TGG 0.549867 2.4:+6207905 MS.gene31119:CDS
CGCACAATTACGGTTACTCC+TGG 0.560145 2.4:+6206804 MS.gene31119:CDS
GGCAATGGTGGTAATGGAGG+AGG 0.565209 2.4:+6207956 MS.gene31119:CDS
CCTCGCGACGATGATGGCAA+TGG 0.603587 2.4:+6207941 MS.gene31119:CDS
CGCGACGATGATGGCAATGG+TGG 0.606298 2.4:+6207944 MS.gene31119:CDS
AATGGTGGTAATGGAGGAGG+CGG 0.609101 2.4:+6207959 MS.gene31119:CDS
GATGGCAATGGTGGTAATGG+AGG 0.610367 2.4:+6207953 MS.gene31119:CDS
TTGCCATCATCGTCGCGAGG+TGG 0.640575 2.4:-6207938 None:intergenic
CCGTAATTGTGCGAGCATCG+CGG 0.652509 2.4:-6206794 None:intergenic
CCATTGCCATCATCGTCGCG+AGG 0.726947 2.4:-6207941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAATATTTCATAATTA+AGG + chr2.4:6207116-6207135 MS.gene31119:intron 10.0%
!! AAAAAAACTAATAAGATTGT+AGG - chr2.4:6207471-6207490 None:intergenic 15.0%
!! ACAGAATAAAAAATCAATTA+AGG - chr2.4:6207809-6207828 None:intergenic 15.0%
!! ATACCATATAACATAAAAAA+AGG + chr2.4:6205565-6205584 MS.gene31119:CDS 15.0%
!! CAGAATAAAAAATCAATTAA+GGG - chr2.4:6207808-6207827 None:intergenic 15.0%
!! TACCATATAACATAAAAAAA+GGG + chr2.4:6205566-6205585 MS.gene31119:CDS 15.0%
!! TATATCATAATCCAATATAA+CGG + chr2.4:6205982-6206001 MS.gene31119:intron 15.0%
!!! ATCAATTAACAGTTTTATTT+TGG - chr2.4:6205834-6205853 None:intergenic 15.0%
!! CAACAACAGTAAATTTATAA+AGG + chr2.4:6207360-6207379 MS.gene31119:intron 20.0%
!! TATATTTGTATACATAGACA+AGG - chr2.4:6207852-6207871 None:intergenic 20.0%
!! TTAAAGGAAAATAACAAGAA+TGG - chr2.4:6206293-6206312 None:intergenic 20.0%
!!! AATAATTTTTATCTTGCAAG+GGG + chr2.4:6205855-6205874 MS.gene31119:intron 20.0%
!!! AATTGCTAATTTTGTAGAAA+AGG - chr2.4:6207762-6207781 None:intergenic 20.0%
!!! ATGGAAATTTTGGATTTTAT+TGG + chr2.4:6206617-6206636 MS.gene31119:intron 20.0%
!!! ATTTTTTATAGGATGGAATA+TGG + chr2.4:6206549-6206568 MS.gene31119:intron 20.0%
!!! GAATAATTTTTATCTTGCAA+GGG + chr2.4:6205854-6205873 MS.gene31119:intron 20.0%
!!! TAAAGGATTTTGATATTAGA+AGG + chr2.4:6207377-6207396 MS.gene31119:intron 20.0%
!!! TATGGTATGGTTTTTTATTT+TGG + chr2.4:6205645-6205664 MS.gene31119:intron 20.0%
!!! TGAATAATTTTTATCTTGCA+AGG + chr2.4:6205853-6205872 MS.gene31119:intron 20.0%
! AATCCAAAATTTCCATGATT+CGG - chr2.4:6206613-6206632 None:intergenic 25.0%
! ACTTATCCAAAATTGTTTGT+TGG + chr2.4:6206662-6206681 MS.gene31119:intron 25.0%
! ATAGCATTTGTCATAATATG+TGG + chr2.4:6207695-6207714 MS.gene31119:intron 25.0%
! ATGATGACTAGTATAGAAAA+TGG - chr2.4:6206974-6206993 None:intergenic 25.0%
! ATGCTAAATGATATTCTTGT+TGG + chr2.4:6205741-6205760 MS.gene31119:intron 25.0%
!! ATCTATTTTCCTATTCTATC+TGG - chr2.4:6206105-6206124 None:intergenic 25.0%
!! CATTTGAAGTGCATAAATAA+TGG + chr2.4:6207177-6207196 MS.gene31119:intron 25.0%
!! TCTATTTTCCTATTCTATCT+GGG - chr2.4:6206104-6206123 None:intergenic 25.0%
!!! AACAGGGGATTTTTATTTTT+TGG + chr2.4:6207441-6207460 MS.gene31119:intron 25.0%
!!! TGCCCTTTTTTTATGTTATA+TGG - chr2.4:6205571-6205590 None:intergenic 25.0%
!!! TGTATTGTTTGTTTTACACT+GGG + chr2.4:6206905-6206924 MS.gene31119:intron 25.0%
!!! TTGTATTGTTTGTTTTACAC+TGG + chr2.4:6206904-6206923 MS.gene31119:intron 25.0%
!!! TTTCTGTAGGCATTTTTTAT+AGG + chr2.4:6206538-6206557 MS.gene31119:intron 25.0%
AAATCTGTCTACTTAACTGA+AGG + chr2.4:6207417-6207436 MS.gene31119:intron 30.0%
AAGTTTCATATGTATGAGAG+TGG - chr2.4:6206452-6206471 None:intergenic 30.0%
AATCTGTCTACTTAACTGAA+GGG + chr2.4:6207418-6207437 MS.gene31119:intron 30.0%
AATGCCTACAGAAAAATCAA+TGG - chr2.4:6206532-6206551 None:intergenic 30.0%
ACAAAACACTATCTACAGAA+GGG - chr2.4:6207521-6207540 None:intergenic 30.0%
ACATGTAACATTCTGTAGAA+AGG - chr2.4:6206745-6206764 None:intergenic 30.0%
ACCTTACCAACTTATCAAAA+AGG - chr2.4:6205810-6205829 None:intergenic 30.0%
ACTAGTATAGAAAATGGAAG+AGG - chr2.4:6206968-6206987 None:intergenic 30.0%
ATCAGGTTTCTTCTATAGTA+AGG - chr2.4:6206075-6206094 None:intergenic 30.0%
ATGTAACATTCTGTAGAAAG+GGG - chr2.4:6206743-6206762 None:intergenic 30.0%
CATGTAACATTCTGTAGAAA+GGG - chr2.4:6206744-6206763 None:intergenic 30.0%
CATTTGTCATAATATGTGGA+CGG + chr2.4:6207699-6207718 MS.gene31119:intron 30.0%
CTAAATCAATATCAAAGCGT+AGG + chr2.4:6207074-6207093 MS.gene31119:intron 30.0%
CTATCAGAAACATATCTGAA+TGG - chr2.4:6206188-6206207 None:intergenic 30.0%
GATATAAAATCCTGCCATAT+TGG - chr2.4:6205968-6205987 None:intergenic 30.0%
TACAAAACACTATCTACAGA+AGG - chr2.4:6207522-6207541 None:intergenic 30.0%
TAGGATTCAACAGAAGTTAA+AGG - chr2.4:6206309-6206328 None:intergenic 30.0%
TCAATAAAGACACTGATGTA+TGG - chr2.4:6207049-6207068 None:intergenic 30.0%
TCCAACATCATATCATTTCT+TGG - chr2.4:6206857-6206876 None:intergenic 30.0%
TGCATAAATAATGGCTTTCT+TGG + chr2.4:6207186-6207205 MS.gene31119:intron 30.0%
TGTTTGCTTTCTTTATGCTA+TGG + chr2.4:6205679-6205698 MS.gene31119:intron 30.0%
! AAATGAATAGAGTTGAGTTG+TGG - chr2.4:6207738-6207757 None:intergenic 30.0%
! AAGATTAGACTTGATGACAA+TGG + chr2.4:6207905-6207924 MS.gene31119:CDS 30.0%
! AATCCGAATCATGGAAATTT+TGG + chr2.4:6206607-6206626 MS.gene31119:intron 30.0%
! AGATTAGACTTGATGACAAT+GGG + chr2.4:6207906-6207925 MS.gene31119:CDS 30.0%
! ATCAGTCCTTTTTGATAAGT+TGG + chr2.4:6205801-6205820 MS.gene31119:intron 30.0%
! CAATGTCTTTAAGAATGTCT+AGG - chr2.4:6208033-6208052 None:intergenic 30.0%
! CATTCAGATATGTTTCTGAT+AGG + chr2.4:6206186-6206205 MS.gene31119:intron 30.0%
! GTTTGTTTGATGGTTTCTTA+TGG + chr2.4:6207598-6207617 MS.gene31119:intron 30.0%
!! ATCTTTTTGTCTGTCATTTC+AGG - chr2.4:6207890-6207909 None:intergenic 30.0%
!!! TCCTTTTTGATAAGTTGGTA+AGG + chr2.4:6205806-6205825 MS.gene31119:intron 30.0%
!!! TGTAGGCATTTTTTATAGGA+TGG + chr2.4:6206542-6206561 MS.gene31119:intron 30.0%
!!! TGTTCCATTGATTTTTCTGT+AGG + chr2.4:6206525-6206544 MS.gene31119:intron 30.0%
AAACATATCTGAATGGTCAC+TGG - chr2.4:6206181-6206200 None:intergenic 35.0%
AAATAGTTAGCAGCATGTGA+CGG - chr2.4:6206356-6206375 None:intergenic 35.0%
AACCATCAAACAAACACACT+TGG - chr2.4:6207593-6207612 None:intergenic 35.0%
AACTGAAACGAAACCATTCT+AGG - chr2.4:6207553-6207572 None:intergenic 35.0%
ACAAGAGGCAATGAAGAAAT+TGG - chr2.4:6206428-6206447 None:intergenic 35.0%
ACTAGGATGCATGATTGTAA+AGG - chr2.4:6207219-6207238 None:intergenic 35.0%
ATCGAAAACCCAGATAGAAT+AGG + chr2.4:6206093-6206112 MS.gene31119:intron 35.0%
ATTAAAATGTGACGCTGCTA+TGG + chr2.4:6205627-6205646 MS.gene31119:CDS 35.0%
CAATGCAAAGAAGCTAGAAA+AGG + chr2.4:6207322-6207341 MS.gene31119:intron 35.0%
CGATATTCTGATGTCTTGTA+TGG + chr2.4:6206689-6206708 MS.gene31119:intron 35.0%
CTTACTTTCAATCCGAATCA+TGG + chr2.4:6206598-6206617 MS.gene31119:intron 35.0%
GATCAAGATAGGAAAGTGAT+AGG - chr2.4:6206328-6206347 None:intergenic 35.0%
GCAATGAAGAAATTGGAACT+AGG - chr2.4:6206421-6206440 None:intergenic 35.0%
GCCAAGAAATGATATGATGT+TGG + chr2.4:6206853-6206872 MS.gene31119:intron 35.0%
GCTTTCTTTATGCTATGGTA+TGG + chr2.4:6205684-6205703 MS.gene31119:intron 35.0%
TCATATTCGGATGTCTTGTA+TGG + chr2.4:6206715-6206734 MS.gene31119:intron 35.0%
TCTTGTATGGTGCTCATATT+CGG + chr2.4:6206702-6206721 MS.gene31119:intron 35.0%
TTCAGATAGAAGAGAAACAG+TGG - chr2.4:6206379-6206398 None:intergenic 35.0%
TTGTAGTCTGTTTCCTAGAA+TGG + chr2.4:6207537-6207556 MS.gene31119:intron 35.0%
TTGTGCAAAAGGTCTATGTT+AGG + chr2.4:6206224-6206243 MS.gene31119:intron 35.0%
! ACATAGACCTTTTGCACAAA+AGG - chr2.4:6206223-6206242 None:intergenic 35.0%
! CGTAGACCAACAAACAATTT+TGG - chr2.4:6206671-6206690 None:intergenic 35.0%
! CTTTTGACCTTTTGTGCAAA+AGG + chr2.4:6206213-6206232 MS.gene31119:intron 35.0%
! CTTTTGCACAAAAGGTCAAA+AGG - chr2.4:6206215-6206234 None:intergenic 35.0%
! TGTTTGATGGTTTCTTATGG+AGG + chr2.4:6207601-6207620 MS.gene31119:intron 35.0%
!! TTACCGGTGTTGTCAAATAT+CGG + chr2.4:6205889-6205908 MS.gene31119:intron 35.0%
!! TTTGAGTTGGACTTATTACC+AGG - chr2.4:6206825-6206844 None:intergenic 35.0%
!!! TTGGCAGAAGTTTTTTGAGT+TGG - chr2.4:6206838-6206857 None:intergenic 35.0%
AACTATGTCCCATTGAGTCA+TGG - chr2.4:6207263-6207282 None:intergenic 40.0%
AATAGTTAGCAGCATGTGAC+GGG - chr2.4:6206355-6206374 None:intergenic 40.0%
ATATTGGCCGAAATTTGGCA+TGG - chr2.4:6205952-6205971 None:intergenic 40.0%
ATGACTCAATGGGACATAGT+TGG + chr2.4:6207262-6207281 MS.gene31119:intron 40.0%
ATGCCAAATTTCGGCCAATA+TGG + chr2.4:6205951-6205970 MS.gene31119:intron 40.0%
ATGTATGAGAGTGGTACAAG+AGG - chr2.4:6206443-6206462 None:intergenic 40.0%
CAAAAGGTCTATGTTAGGAG+GGG + chr2.4:6206229-6206248 MS.gene31119:intron 40.0%
CAATCATGCATCCTAGTGAT+TGG + chr2.4:6207222-6207241 MS.gene31119:intron 40.0%
CTACTTAACTGAAGGGAACA+GGG + chr2.4:6207425-6207444 MS.gene31119:intron 40.0%
GAACTAGGAAGAGACTAAAG+TGG - chr2.4:6206406-6206425 None:intergenic 40.0%
GATATTTGACAACACCGGTA+AGG - chr2.4:6205890-6205909 None:intergenic 40.0%
GCAAAAGGTCTATGTTAGGA+GGG + chr2.4:6206228-6206247 MS.gene31119:intron 40.0%
GTCCAAGTGTGTTTGTTTGA+TGG + chr2.4:6207588-6207607 MS.gene31119:intron 40.0%
TAATAGAGACTGCAACAAGC+AGG + chr2.4:6206139-6206158 MS.gene31119:intron 40.0%
TACTTAACTGAAGGGAACAG+GGG + chr2.4:6207426-6207445 MS.gene31119:intron 40.0%
TCTACTTAACTGAAGGGAAC+AGG + chr2.4:6207424-6207443 MS.gene31119:intron 40.0%
TGCAAAAGGTCTATGTTAGG+AGG + chr2.4:6206227-6206246 MS.gene31119:intron 40.0%
TGTAGGTCATACCAATCACT+AGG - chr2.4:6207236-6207255 None:intergenic 40.0%
! ATAGTTGGTTTAGGCGATAG+AGG + chr2.4:6207277-6207296 MS.gene31119:intron 40.0%
! CAATGGGACATAGTTGGTTT+AGG + chr2.4:6207268-6207287 MS.gene31119:intron 40.0%
! TGCTTGTTGCAGTCTCTATT+AGG - chr2.4:6206140-6206159 None:intergenic 40.0%
! TGTTTTACACTGGGACAAAC+TGG + chr2.4:6206914-6206933 MS.gene31119:intron 40.0%
! TTCTATCTGGGTTTTCGATC+AGG - chr2.4:6206092-6206111 None:intergenic 40.0%
!! CTAGTGCTTTTGGGTATTCT+TGG + chr2.4:6208004-6208023 MS.gene31119:CDS 40.0%
!! GGAGGTTTCTTTTGAAGAAC+TGG + chr2.4:6207619-6207638 MS.gene31119:intron 40.0%
!! TTCTAGCTTCTTTGCATTGC+AGG - chr2.4:6207321-6207340 None:intergenic 40.0%
AATATAACGGCGCCACAAAG+TGG + chr2.4:6205995-6206014 MS.gene31119:intron 45.0%
AATGGAAGAGGCCAACACAT+TGG - chr2.4:6206956-6206975 None:intergenic 45.0%
AATGTGACGCTGCTATGGTA+TGG + chr2.4:6205632-6205651 MS.gene31119:intron 45.0%
ACTTTGTGGCGCCGTTATAT+TGG - chr2.4:6205996-6206015 None:intergenic 45.0%
AGGGGAGCTTAATTCCTTAC+CGG + chr2.4:6205873-6205892 MS.gene31119:intron 45.0%
ATGGAAGAGGCCAACACATT+GGG - chr2.4:6206955-6206974 None:intergenic 45.0%
CAAATTTCGGCCAATATGGC+AGG + chr2.4:6205955-6205974 MS.gene31119:intron 45.0%
CTAGGAAGAGACTAAAGTGG+AGG - chr2.4:6206403-6206422 None:intergenic 45.0%
CTGCCATATTGGCCGAAATT+TGG - chr2.4:6205957-6205976 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG + chr2.4:6205895-6205914 MS.gene31119:intron 45.0%
TACAGCCTCCATGACTCAAT+GGG + chr2.4:6207252-6207271 MS.gene31119:intron 45.0%
TATGTCCCATTGAGTCATGG+AGG - chr2.4:6207260-6207279 None:intergenic 45.0%
TGGCCGATATTTGACAACAC+CGG - chr2.4:6205895-6205914 None:intergenic 45.0%
TTGTCAAATATCGGCCATGG+TGG + chr2.4:6205898-6205917 MS.gene31119:intron 45.0%
TTTAGCACCTCCCAATGTGT+TGG + chr2.4:6206942-6206961 MS.gene31119:intron 45.0%
! AGCATCGCGGGTTATAGTTT+GGG - chr2.4:6206784-6206803 None:intergenic 45.0%
! ATCTGAATGGTCACTGGTCT+TGG - chr2.4:6206175-6206194 None:intergenic 45.0%
! GATGATGGCAATGGTGGTAA+TGG + chr2.4:6207950-6207969 MS.gene31119:CDS 45.0%
! TGACGGGTAAGGATCAAGAT+AGG - chr2.4:6206339-6206358 None:intergenic 45.0%
!! ATATCGGCCATGGTGGATAT+TGG + chr2.4:6205905-6205924 MS.gene31119:intron 45.0%
!! GCAGCGTCACATTTTAATCG+AGG - chr2.4:6205625-6205644 None:intergenic 45.0%
!!! GGATATTGGTGGTGGCTTTT+GGG + chr2.4:6205919-6205938 MS.gene31119:intron 45.0%
!!! GGTGGTGGTAATTTTTCAGG+TGG + chr2.4:6207980-6207999 MS.gene31119:CDS 45.0%
!!! TCAGGTGGACTAGTGCTTTT+GGG + chr2.4:6207995-6208014 MS.gene31119:CDS 45.0%
!!! TGGATATTGGTGGTGGCTTT+TGG + chr2.4:6205918-6205937 MS.gene31119:intron 45.0%
!!! TTCAGGTGGACTAGTGCTTT+TGG + chr2.4:6207994-6208013 MS.gene31119:CDS 45.0%
CATTGAGTCATGGAGGCTGT+AGG - chr2.4:6207253-6207272 None:intergenic 50.0%
CGCACAATTACGGTTACTCC+TGG + chr2.4:6206804-6206823 MS.gene31119:CDS 50.0%
CTACAGCCTCCATGACTCAA+TGG + chr2.4:6207251-6207270 MS.gene31119:intron 50.0%
CTCACCGCCATGCCAAATTT+CGG + chr2.4:6205942-6205961 MS.gene31119:intron 50.0%
GAGCCAAAATCCTGCCAAAC+CGG - chr2.4:6206021-6206040 None:intergenic 50.0%
GTAAGGAGCAGTGTTGCCAA+TGG - chr2.4:6206058-6206077 None:intergenic 50.0%
TTGGCCGAAATTTGGCATGG+CGG - chr2.4:6205949-6205968 None:intergenic 50.0%
! AGACTTGATGACAATGGGCC+TGG + chr2.4:6207911-6207930 MS.gene31119:CDS 50.0%
! GAGCATCGCGGGTTATAGTT+TGG - chr2.4:6206785-6206804 None:intergenic 50.0%
! GTTGGTTTAGGCGATAGAGG+TGG + chr2.4:6207280-6207299 MS.gene31119:intron 50.0%
!! AATGGTGGTAATGGAGGAGG+CGG + chr2.4:6207959-6207978 MS.gene31119:CDS 50.0%
!! GATGGCAATGGTGGTAATGG+AGG + chr2.4:6207953-6207972 MS.gene31119:CDS 50.0%
!! GGCGGTGGTGGTAATTTTTC+AGG + chr2.4:6207977-6207996 MS.gene31119:CDS 50.0%
!! TTAGCAGCATGTGACGGGTA+AGG - chr2.4:6206350-6206369 None:intergenic 50.0%
AGGAGCAGTGTTGCCAATGG+CGG - chr2.4:6206055-6206074 None:intergenic 55.0%
CCGCGATGCTCGCACAATTA+CGG + chr2.4:6206794-6206813 MS.gene31119:CDS 55.0%
GAAGAGGCCAACACATTGGG+AGG - chr2.4:6206952-6206971 None:intergenic 55.0%
GCCACCACCAATATCCACCA+TGG - chr2.4:6205915-6205934 None:intergenic 55.0%
! CCGTAATTGTGCGAGCATCG+CGG - chr2.4:6206797-6206816 None:intergenic 55.0%
! CGTAATTGTGCGAGCATCGC+GGG - chr2.4:6206796-6206815 None:intergenic 55.0%
!! GCCATGGTGGATATTGGTGG+TGG + chr2.4:6205911-6205930 MS.gene31119:intron 55.0%
!! GGCAATGGTGGTAATGGAGG+AGG + chr2.4:6207956-6207975 MS.gene31119:CDS 55.0%
!! TCGGCCATGGTGGATATTGG+TGG + chr2.4:6205908-6205927 MS.gene31119:intron 55.0%
!!! AGGATTTTGGCTCTCCGCCA+CGG + chr2.4:6206028-6206047 MS.gene31119:intron 55.0%
!!! TGGCCGGTTTGGCAGGATTT+TGG + chr2.4:6206015-6206034 MS.gene31119:intron 55.0%
CCATTGCCATCATCGTCGCG+AGG - chr2.4:6207944-6207963 None:intergenic 60.0%
TAACGGCGCCACAAAGTGGC+CGG + chr2.4:6205999-6206018 MS.gene31119:intron 60.0%
TTGCCACCTCGCGACGATGA+TGG + chr2.4:6207935-6207954 MS.gene31119:CDS 60.0%
TTGCCATCATCGTCGCGAGG+TGG - chr2.4:6207941-6207960 None:intergenic 60.0%
! CCTCGCGACGATGATGGCAA+TGG + chr2.4:6207941-6207960 MS.gene31119:CDS 60.0%
! CGCGACGATGATGGCAATGG+TGG + chr2.4:6207944-6207963 MS.gene31119:CDS 60.0%
! CTGCCAAACCGGCCACTTTG+TGG - chr2.4:6206010-6206029 None:intergenic 60.0%
!! CACAAAGTGGCCGGTTTGGC+AGG + chr2.4:6206008-6206027 MS.gene31119:intron 60.0%
GCGCCACAAAGTGGCCGGTT+TGG + chr2.4:6206004-6206023 MS.gene31119:intron 65.0%
GTGTTGCCAATGGCGGTCCG+TGG - chr2.4:6206048-6206067 None:intergenic 65.0%
TCGTCGCGAGGTGGCAATCC+AGG - chr2.4:6207932-6207951 None:intergenic 65.0%
TTGCCAATGGCGGTCCGTGG+CGG - chr2.4:6206045-6206064 None:intergenic 65.0%
!! GGTAATGGAGGAGGCGGTGG+TGG + chr2.4:6207965-6207984 MS.gene31119:CDS 65.0%
!! GGTGGTAATGGAGGAGGCGG+TGG + chr2.4:6207962-6207981 MS.gene31119:CDS 65.0%
TCTCCGCCACGGACCGCCAT+TGG + chr2.4:6206039-6206058 MS.gene31119:intron 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 6205556 6208102 6205556 ID=MS.gene31119
chr2.4 mRNA 6205556 6208102 6205556 ID=MS.gene31119.t1;Parent=MS.gene31119
chr2.4 exon 6205556 6205648 6205556 ID=MS.gene31119.t1.exon1;Parent=MS.gene31119.t1
chr2.4 CDS 6205556 6205648 6205556 ID=cds.MS.gene31119.t1;Parent=MS.gene31119.t1
chr2.4 exon 6206753 6206825 6206753 ID=MS.gene31119.t1.exon2;Parent=MS.gene31119.t1
chr2.4 CDS 6206753 6206825 6206753 ID=cds.MS.gene31119.t1;Parent=MS.gene31119.t1
chr2.4 exon 6207900 6208102 6207900 ID=MS.gene31119.t1.exon3;Parent=MS.gene31119.t1
chr2.4 CDS 6207900 6208102 6207900 ID=cds.MS.gene31119.t1;Parent=MS.gene31119.t1
Gene Sequence

>MS.gene31119

ATGAGACGTATACCATATAACATAAAAAAAGGGCAGCTTCAGACTTCAGCTTTTCAAACTATATCACCTCGATTAAAATGTGACGCTGCTATGGTATGGTTTTTTATTTTGGAATTTGTTGATTGTTTGCTTTCTTTATGCTATGGTATGGTTATTTTTATTTCTGTTGATTGTTTGCTTTCTTTATGCTAAATGATATTCTTGTTGGAAAGTATTAGCAGCGTTTTGTGTTATTGCAATGTCAAATCAGTCCTTTTTGATAAGTTGGTAAGGTTCCAAAATAAAACTGTTAATTGATGAATAATTTTTATCTTGCAAGGGGAGCTTAATTCCTTACCGGTGTTGTCAAATATCGGCCATGGTGGATATTGGTGGTGGCTTTTGGGCTCACCGCCATGCCAAATTTCGGCCAATATGGCAGGATTTTATATCATAATCCAATATAACGGCGCCACAAAGTGGCCGGTTTGGCAGGATTTTGGCTCTCCGCCACGGACCGCCATTGGCAACACTGCTCCTTACTATAGAAGAAACCTGATCGAAAACCCAGATAGAATAGGAAAATAGATTATAAAATGATACCTAATAGAGACTGCAACAAGCAGGCAGACTGCAACCAAGACCAGTGACCATTCAGATATGTTTCTGATAGGAGACCTTTTGACCTTTTGTGCAAAAGGTCTATGTTAGGAGGGGTAATGTATTATGTAGAGATAGAAATGTAACTAACAGTTCCATTCTTGTTATTTTCCTTTAACTTCTGTTGAATCCTATCACTTTCCTATCTTGATCCTTACCCGTCACATGCTGCTAACTATTTCCACTGTTTCTCTTCTATCTGAATCCTCCACTTTAGTCTCTTCCTAGTTCCAATTTCTTCATTGCCTCTTGTACCACTCTCATACATATGAAACTTTTTAAGTAGAGAAGTTTAATGTCTGTTTGTTGACTGTTGATTGATTCGCTGCATGTTCCATTGATTTTTCTGTAGGCATTTTTTATAGGATGGAATATGGAAGTAAATGTTGTTTGATCTTTTGTTCTTACTTTCAATCCGAATCATGGAAATTTTGGATTTTATTGGTGAATCATTGACTAATAGAAAAACTTATCCAAAATTGTTTGTTGGTCTACGATATTCTGATGTCTTGTATGGTGCTCATATTCGGATGTCTTGTATGGCACCCCTTTCTACAGAATGTTACATGTGCTGCTGCTGCTGCAACCCAAACTATAACCCGCGATGCTCGCACAATTACGGTTACTCCTGGTAATAAGTCCAACTCAAAAAACTTCTGCCAAGAAATGATATGATGTTGGAGAAAGTATATAATGTTAGATTGCTAAGTTGTATTGTTTGTTTTACACTGGGACAAACTGGAACTATTTAGCACCTCCCAATGTGTTGGCCTCTTCCATTTTCTATACTAGTCATCATGTGCATATTAGTAAATAGTTTATGTATATAAATTTCATTCTTCTTTCTTCTGCCATACATCAGTGTCTTTATTGAAATAACTAAATCAATATCAAAGCGTAGGTTTTTTATGTGAGAAACAAATATGAATATTTCATAATTAAGGTATGCACACTCAAATGTTTGTTTCTTTCAAATAGAAGTCATTTGAAGTGCATAAATAATGGCTTTCTTGGATCTTTTCCTTTACAATCATGCATCCTAGTGATTGGTATGACCTACAGCCTCCATGACTCAATGGGACATAGTTGGTTTAGGCGATAGAGGTGGTTTTCTTGCTTAATACCTGCAATGCAAAGAAGCTAGAAAAGGAACTCAAATGAGTAGCAACAACAGTAAATTTATAAAGGATTTTGATATTAGAAGGTTAAAATAAATAGTTTCAAATCTGTCTACTTAACTGAAGGGAACAGGGGATTTTTATTTTTTGGTGCTCCTACAATCTTATTAGTTTTTTTTTTGACAACACAATCTTATTAGTTTTTCCCTTCTGTAGATAGTGTTTTGTAGTCTGTTTCCTAGAATGGTTTCGTTTCAGTTTTGTTGTCTTTATTTGTCCAAGTGTGTTTGTTTGATGGTTTCTTATGGAGGTTTCTTTTGAAGAACTGGAAACATTTACTACAAATTGCACGACTTGACATTTTGTAAATAAATAATAATATATAGCATTTGTCATAATATGTGGACGGATACTATTGAAATCCACAACTCAACTCTATTCATTTACCTTTTCTACAAAATTAGCAATTATGTACATGTAAATGTTGTTTCACCCTTAATTGATTTTTTATTCTGTGTTTCGAATAATTATACGTTCCTTGTCTATGTATACAAATATAATTTGCTATCATTTTCCTGAAATGACAGACAAAAAGATTAGACTTGATGACAATGGGCCTGGATTGCCACCTCGCGACGATGATGGCAATGGTGGTAATGGAGGAGGCGGTGGTGGTAATTTTTCAGGTGGACTAGTGCTTTTGGGTATTCTTGGTGTCCTAGACATTCTTAAAGACATTGAGAGTGAAATTCAACGCAAAGTCAAAGATAGCAGATTTGATCAAGCTTGA
Protein sequence

>MS.gene31119.t1

MRRIPYNIKKGQLQTSAFQTISPRLKCDAAMNVTCAAAAATQTITRDARTITVTPDKKIRLDDNGPGLPPRDDDGNGGNGGGGGGNFSGGLVLLGILGVLDILKDIESEIQRKVKDSRFDQA